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From Sep 08, 2016 to Oct 07, 2016

Oct 07, 2016

08:57 PM Task #5256 (Feedback): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Please report feedback and close the ticket. Pasquale Pagano
08:15 PM Task #5451 (Feedback): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
The R packages and their dependencies are now aligned on all the dataminer and rstudio servers.
Andrea Dell'Amico
04:20 PM Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
The R packages update is running right now.
I'm listing the debian packages that provide libraries needed by some ...
Andrea Dell'Amico
03:36 PM Task #5451 (In Progress): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
Andrea Dell'Amico
02:16 PM Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
The dataminer all have the same set of R packages installed.
On the rstudio/rstudio-dev servers the R installed pack...
Andrea Dell'Amico
12:30 PM Task #5451 (Closed): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
Non exhaustive inventory of libraries (to complete by R-related system admins probably):
* CURL
* GDAL
* libxml...
Emmanuel Blondel
07:54 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Emmanuel Blondel wrote:
> Thanks Andrea for the information, and for your prompt action on this ticket (again sorry,...
Andrea Dell'Amico
06:45 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Thanks Andrea for the information, and for your prompt action on this ticket (again sorry, i was not in copy of the t... Emmanuel Blondel
01:45 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Emmanuel Blondel wrote:
> Sorry, i was not aware of this new ticket, so in the meanwhile i've created a support tick...
Andrea Dell'Amico
07:43 PM Task #4865 (Feedback): Installing data analysis machine to develop prototypes
Pasquale Pagano
07:41 PM Task #4865 (In Progress): Installing data analysis machine to develop prototypes
Pasquale Pagano
06:39 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Maybe not, certainly. I'm categoric on the tests i did and where i did it, on RPrototypingLab RStudio and Dataminer, ... Emmanuel Blondel
06:13 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
The Dataminer has been recently restarted several times in the RPrototypingLab thus the locale has been reloaded. In ... Gianpaolo Coro
01:26 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
I confirm myself and Levi have been running GRID-ARENDAL algorithm in RPrototypingLab VRE RStudio (for running in par... Emmanuel Blondel
01:11 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Hi Emmanuel, are you sure you are not using the RStudioLab or the StockAssessment VRE? IRD was using these two.
T...
Gianpaolo Coro
01:06 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Pasquale Pagano wrote:
> If I correctly understood, in one VRE, RPrototypingLab, this issue is not present. A more g...
Emmanuel Blondel
01:04 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Gianpaolo Coro wrote:
> Hi Emmanuel, your request is right and a process will be implemented to give you this inform...
Emmanuel Blondel
12:58 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
If I correctly understood, in one VRE, RPrototypingLab, this issue is not present. A more general solution has to be ... Pasquale Pagano
12:46 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Hi Emmanuel, your request is right and a process will be implemented to give you this information.
For the time bei...
Gianpaolo Coro
12:35 PM Task #5452 (Closed): Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
As suggestion, ...
Emmanuel Blondel
06:25 PM Task #5460: Improve Tabular Data Manager GUI
I must check, but I think we cannot do operations on a TR declared final Giancarlo Panichi
05:11 PM Task #5460 (Closed): Improve Tabular Data Manager GUI
Please make the status of a Tabular resource more explicit, and improve UI by (either/or):
Disable actions that wi...
Pasquale Pagano
06:07 PM Task #5178 (Closed): Enable caching of static content (images) on gateway production cluster
Andrea Dell'Amico
06:06 PM Incident #5436 (Closed): the authorization-service node is not reachable outside the CNR network
Andrea Dell'Amico
05:11 PM Support #4855: TabMan; I cannot remove a merged column, but I can after I clone
I opened a task with @anton.ellenbroek@fao.org suggestions. Pasquale Pagano
05:02 PM Support #4855: TabMan; I cannot remove a merged column, but I can after I clone
Please make the status of a Tabular resource more explicit, and improve UI by (either/or):
* Disable actions that ...
Anton Ellenbroek
04:41 PM Support #4855 (Rejected): TabMan; I cannot remove a merged column, but I can after I clone
If the dataset is final the behaviour is the expected one, if not please reopen the ticket and report additional info... Pasquale Pagano
02:36 PM Task #5457 (Closed): Data transfer should support update
The data transfer service should support the capability to update previously transferred files and directories. Pasquale Pagano
02:17 PM Task #5353: Database + endpoint needed
step 1 - ok :) Denis Pyriochos
09:02 AM Task #5353: Database + endpoint needed
Denis, user and password are the same of the dev database, I'm sending the password to you via email. Tommaso Piccioli
01:03 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
The WebApp publisher is a process of Dataminer and, as such, all the information about a Web application is stored on... Gianpaolo Coro
12:44 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
An option could be to publish on the IS the web app made accessible via access.d4science.org. This will present the s... Pasquale Pagano
12:26 PM Task #5448: Dataminer - Need to align R configuration with RStudio simulation environment
Hello, let me explain, I created this ticket to make it clearly separated from an activity (developed a specific R al... Emmanuel Blondel
12:15 PM Task #5448: Dataminer - Need to align R configuration with RStudio simulation environment
Are there other subtasks associated to this activity? If we follow the ticket netiquette, sub tickets are a partition... Pasquale Pagano

Oct 06, 2016

11:41 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Blocking for https://support.d4science.org/issues/4991 Emmanuel Blondel
11:02 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Please be sure to target also dev geoservers (and not only), required for the ongoing UI developments (http://geoserv... Emmanuel Blondel
11:30 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Sorry, i was not aware of this new ticket, so in the meanwhile i've created a support ticket for this to split from t... Emmanuel Blondel
11:21 PM Task #5448 (Closed): Dataminer - Need to align R configuration with RStudio simulation environment
It was noticed in this activity https://support.d4science.org/issues/4652#note-24 that R configuration was misaligned... Emmanuel Blondel
11:12 PM Task #5447 (Closed): Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Initial ticket:
```
Dataminer - web-app publisher - need option to keep single web-app target URL:
Dataminer web...
Emmanuel Blondel
10:48 PM Incident #5436 (Feedback): the authorization-service node is not reachable outside the CNR network
Andrea Dell'Amico
10:48 PM Incident #5436 (In Progress): the authorization-service node is not reachable outside the CNR network
Port 9090 is now open to the world.
Andrea Dell'Amico
02:38 PM Incident #5436 (Closed): the authorization-service node is not reachable outside the CNR network
a firewall in node7.d.d4science.research-infrastructures.eu prevent access from athens to the authorization service n... Lucio Lelii
05:39 PM Task #4919 (Closed): Enhance raster data metadata for the data catalogue
Gianpaolo Coro
05:23 PM Incident #5441 (Closed): org.gcube.portlets-admin.fhn-manager-portlet org.gcube.portlets-admin.fhn-manager-portlet.1-1-0 gwt-user jar in portlet context
Released version 1.1.1 fixes this issue. See related release ticket. Fabio Sinibaldi
05:16 PM Incident #5441 (Closed): org.gcube.portlets-admin.fhn-manager-portlet org.gcube.portlets-admin.fhn-manager-portlet.1-1-0 gwt-user jar in portlet context
The gwt-user jar and get servlet jar are set as compile in pom, they should be set at provided Massimiliano Assante
04:40 PM Incident #5439 (Closed): ETICS remote builds fail do tue status not found
Massimiliano Assante
04:40 PM Incident #5439 (In Progress): ETICS remote builds fail do tue status not found
Massimiliano Assante
03:50 PM Incident #5439 (Closed): ETICS remote builds fail do tue status not found
probably the disk space has finished Massimiliano Assante
04:20 PM Task #5440 (Closed): DataMiner in the SoBigData.eu VRE
DataMiner is required in the SoBigData.eu VRE:
https://services.d4science.org/group/sobigdata.eu
The required res...
Gianpaolo Coro
01:09 PM Task #5353: Database + endpoint needed
Dear @tommaso.piccioli@isti.cnr.it could you please send me the password as I should run the init scripts for the dat... Denis Pyriochos
12:50 PM Task #5434 (Closed): Edison environment
A new VO, named Edison, has to be created. This new VO will host the VREs for the Edison project. A first VRE has als... Pasquale Pagano
09:55 AM Upgrade #5079 (In Progress): /gcube/preprod upgrade to gCube 4.1.0
Roberto Cirillo
09:54 AM Upgrade #5079 (Planned): /gcube/preprod upgrade to gCube 4.1.0
Roberto Cirillo

Oct 05, 2016

08:12 PM Support #5234 (Closed): svn.madgik.di.uoa.gr authentication issues

(1) The gcube repository right now is open to the public for read. The behavior to the link mentioned in the ticket...
Kostas Kakaletris
05:06 PM Support #5234: svn.madgik.di.uoa.gr authentication issues
Login to https://svn.madgik.di.uoa.gr/code/ is working with my personal account, so it must be a problem with the spe... Kostas Kakaletris
04:53 PM Support #5234 (In Progress): svn.madgik.di.uoa.gr authentication issues
Kostas Kakaletris
06:12 PM Upgrade #5083: Preprod Gateway upgrade to gCube 4.1
All the portlets having built last night have been deployed on preprod Massimiliano Assante
12:16 PM Upgrade #5083 (In Progress): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
12:16 PM Upgrade #5083 (Planned): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
06:10 PM Upgrade #5079: /gcube/preprod upgrade to gCube 4.1.0
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** access-d.d4science.org
* **(CNR) DONE** collector-pre.d4sc...
Roberto Cirillo
06:00 PM Task #5169 (Closed): Prepare environment to test Generic Worker on Dataminer
Tests have been done with Cloud computing algorithms using two DataMiners as Worker nodes. Everything works fine with... Gianpaolo Coro
01:22 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
The issue was due to a common-scope library left in the web application. The newly installed service works. All the r... Gianpaolo Coro
12:11 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
I'm calling the service with the NextNext token, but I see these errors on the GHN referring to the gCubeApps scope:
...
Gianpaolo Coro
11:39 AM Task #5169 (Feedback): Prepare environment to test Generic Worker on Dataminer
Andrea Dell'Amico
11:39 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
It seems it's working now. The correct scopes are `/gcube/devNext /gcube/devNext/NextNext`
Andrea Dell'Amico
10:50 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
Lucio Lelii wrote:
> java TokenGenerator <TOKEN_GIVEN_BY_LUCIO> dataminer2-d-d4s.d4science.org 80 /home/gcube/.conta...
Andrea Dell'Amico
10:41 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
java TokenGenerator <TOKEN_GIVEN_BY_LUCIO> dataminer2-d-d4s.d4science.org 80 /home/gcube/.containerxml/2-container.xm... Lucio Lelii
10:40 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
A question about the `http://thredds.d4science.org/thredds/fileServer/public/netcdf/gebco_08_OCEANS_CLIMATOLOGY_METEO... Andrea Dell'Amico
10:14 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
Gianpaolo Coro wrote:
> Could you retry now please?
> Anyway, I fear that some snapshots of the authorization libr...
Andrea Dell'Amico
12:31 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
Could you retry now please?
Anyway, I fear that some snapshots of the authorization libraries are not updated. Plea...
Gianpaolo Coro
05:39 PM Task #5422 (Closed): develop a proxy service to be used for access http external pages from the portal domain
This service should provide a general solution for rendering within the portal external pages that uses the HTTP prot... Gabriele Giammatteo
04:29 PM Task #4107 (Closed): install FHNManager and FHNPortlet
Nunzio Andrea Galante
04:25 PM Task #4106 (Closed): install portal 3.11.0
Daniele Pavia
04:23 PM Task #4112 (Closed): import users from production infrastructure
Well, in the end we decided to create test users when the need arises and be done with it. Sorry for all the spam gen... Daniele Pavia
03:36 PM Task #5353: Database + endpoint needed
Is there a way to give the password as I should run the setup scripts? Denis Pyriochos
02:46 PM Task #5353 (In Progress): Database + endpoint needed
New empty DB created ( SimulFishGrowth_pre ) , is available at the server db-sfg-pre.d4science.org with the same logi... Tommaso Piccioli
01:02 PM Task #5353: Database + endpoint needed
Better safe than sorry, eh? ;) Denis Pyriochos
12:59 PM Task #5353: Database + endpoint needed
Denis Pyriochos wrote:
> As far as I know and based on your suggestions, we are setting the current scope and then q...
Massimiliano Assante

Oct 04, 2016

07:44 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
Gianpaolo Coro wrote:
> The GW-Dataminer machines should be placed behind a proxy named dataminer-d-workers.d4scienc...
Andrea Dell'Amico
07:43 PM Task #5169 (In Progress): Prepare environment to test Generic Worker on Dataminer
I tried using the zip file at last.
The deploy fails with the following exception:
~~~
2016-10-04 19:38:04,614...
Andrea Dell'Amico
10:34 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
The GW-Dataminer machines should be placed behind a proxy named dataminer-d-workers.d4science.org Gianpaolo Coro
06:00 PM Task #5359 (In Progress): Endpoint access

> Please bear with me and let me get it straight. In a brand new portlet we are developing and in a servlet we are ...
Massimiliano Assante
05:51 PM Task #5359: Endpoint access
Please bear with me and let me get it straight. In a brand new portlet we are developing and in a servlet we are deve... Denis Pyriochos
04:22 PM Task #5359: Endpoint access
Hi Denis, yes, the RPrototypeLab substitutes the dev. environment for you and acts like a pre-production environment ... Gianpaolo Coro
04:07 PM Task #5359: Endpoint access
As @gianpaolo.coro@isti.cnr.it pointed, we will ask for permission on a per VRE basis. Nevertheless I am very interes... Denis Pyriochos
03:50 PM Task #5359: Endpoint access
So far we had
1. the dev DataMiner as found at https://next.d4science.org/infrastructure-monitor# and is valid f...
Denis Pyriochos
01:54 PM Task #5359: Endpoint access
During the creation phase of a VRE (or after), Dataminer should be explicitly requested along with algorithms. Depend... Gianpaolo Coro
01:27 PM Task #5359: Endpoint access
So Gianpaolo, the DataMiner is accessible to newly created scopes-VREs automatically (out of the box)? Or one should ... Denis Pyriochos
05:43 PM Task #5353: Database + endpoint needed
As far as I know and based on your suggestions, we are setting the current scope and then query the IS for SimulFishG... Denis Pyriochos
04:37 PM Task #5353: Database + endpoint needed
Denis, before proceeding I would like to ask if your query to the IS for the endpoint (SimulFishGrowth DB) uses the c... Massimiliano Assante
01:22 PM Task #5353: Database + endpoint needed
The previous database is for development, this is for preproduction. We may need one more for production.
The data...
Denis Pyriochos
04:39 PM Task #5398 (Closed): Endpoint access - SimulFishGrowthData
For the mentioned VRE, we needs access to the endpoint
* SimulFishGrowthData
Denis Pyriochos
04:38 PM Task #5397 (Closed): Endpoint access - SimulFishGrowthData
For the mentioned VRE, we needs access to the endpoint
* SimulFishGrowthData
Denis Pyriochos
04:38 PM Task #5396 (Closed): Endpoint access - SimulFishGrowthData
For the mentioned VRE, we needs access to the endpoint
* SimulFishGrowthData
Denis Pyriochos
04:33 PM Task #5393 (Closed): Deploy service + endpoint

1. We need the service named
org.gcube.data-access.simul-fish-growth-data.1.0
[integrated at 4.1](https:/...
Denis Pyriochos
04:19 PM Task #5386 (Closed): Endpoint access - SimulFishGrowth
For the mentioned VRE, we needs access to the endpoint
* Service / Database / SimulFishGrowth
Denis Pyriochos
04:19 PM Task #5385 (Closed): Endpoint access - SimulFishGrowth
For the mentioned VRE, we needs access to the endpoint
* Service / Database / SimulFishGrowth
Denis Pyriochos
04:19 PM Task #5384 (Closed): Endpoint access - SimulFishGrowth
For the mentioned VRE, we needs access to the endpoint
* Service / Database / SimulFishGrowth
Denis Pyriochos
04:14 PM Task #5383 (Closed): Endpoint access
For the mentioned VRE, we needs access to the endpoint
* Service / DataAnalysis / DataMiner
algorithm
* Simu...
Denis Pyriochos
04:14 PM Task #5382 (Closed): Endpoint access
For the mentioned VRE, we needs access to the endpoint
* Service / DataAnalysis / DataMiner
algorithm
* Simu...
Denis Pyriochos
04:03 PM Task #5381 (Closed): Endpoint access
For the mentioned VRE, we needs access to the endpoint
* Service / DataAnalysis / DataMiner
algorithm
* Simu...
Denis Pyriochos
10:04 AM Task #4106 (In Progress): install portal 3.11.0
Liferay portal has been deployed (and updated to 4.1.0 snapshot), we just need to understand whether we need to impor... Daniele Pavia
09:55 AM Task #4108 (Closed): install authorisation service
The authorization-service-2.0.0 has been deployed. Daniele Pavia
09:51 AM Task #4112: import users from production infrastructure
Yes Pasquale, I guess you're right. The idea was to import into out Liferay instance those users that are supposed to... Daniele Pavia

Oct 03, 2016

10:05 PM Task #5353: Database + endpoint needed
We already have a dedicated postgresql with a database that has the same name: https://support.d4science.org/issues/3... Andrea Dell'Amico
07:13 PM Task #5353 (Closed): Database + endpoint needed
1. We need a postgress database. The database will not host large volume of data, a starting point of 10G should be s... Denis Pyriochos
09:39 PM Task #5359: Endpoint access
Dear Denis, differently from the development environment, in the production environment DataMiner is a cluster of mac... Gianpaolo Coro
09:09 PM Task #5359: Endpoint access
If I understand correct, each endpoint is valid for a certain scope (or set of scopes). Our portlet shall operate in ... Denis Pyriochos
07:44 PM Task #5359: Endpoint access
What do you mean by you need access to the following endpoint? Massimiliano Assante
07:25 PM Task #5359 (Closed): Endpoint access
We needs access to the following endpoint:
* Service / DataAnalysis / DataMiner
Denis Pyriochos
09:04 PM Task #5358: Portlet resources
Yes. And we will have each one as a sub-issue. Denis Pyriochos
07:47 PM Task #5358: Portlet resources
If I understand correctly you need to create some infrastructure resources (of type service endpoint?) and to read th... Massimiliano Assante
07:24 PM Task #5358 (Closed): Portlet resources
The portlet we are integrating into gcube 4.1 needs a) some resources and b) access to some resources.
The requests ...
Denis Pyriochos
04:56 PM Task #4112: import users from production infrastructure
This ticket does not make sense as it is now. You should clarify why you need this list of users, what kind of inform... Pasquale Pagano
03:18 PM Task #4112 (In Progress): import users from production infrastructure
Massimiliano, could we have an export of the users from the production liferay portal? Is that the best course to acc... Daniele Pavia
03:13 PM Upgrade #1956 (Completed): gCubeApps VO upgrade to gCube 3.10.0
Massimiliano Assante
02:46 PM Support #5342 (Closed): Enable user dkatris (at cite.gr) on gCube SVN
Done Tommaso Piccioli
02:05 PM Support #5342 (Closed): Enable user dkatris (at cite.gr) on gCube SVN
Please enable Dimitris on gCube SVN Massimiliano Assante
01:19 PM Task #5338 (Closed): Allow XHR requests on D4science Geoserver WFS
At now JS clients are not able to perform XHRs on GeoServer. This is blocking for implementing UIs that require WFS X... Emmanuel Blondel

Sep 30, 2016

07:35 PM Task #5290 (Feedback): Align DataMiner Locale to the RStudio Locale
Andrea Dell'Amico
07:35 PM Task #5290 (In Progress): Align DataMiner Locale to the RStudio Locale
Done. The tomcat service needs a restart before being able to see the new setting.
Andrea Dell'Amico
05:20 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Yes, the request is to have UTF-8 everywhere Gianpaolo Coro
05:03 PM Task #5290: Align DataMiner Locale to the RStudio Locale
I see that rstudio.d4science.org esplicitly sets the `LANG` variable here:
~~~
cat /etc/default/locale
# File g...
Andrea Dell'Amico
03:37 PM Task #5290 (Closed): Align DataMiner Locale to the RStudio Locale
As reported in #4652#note-24, the system Locale is equal to "C" on DataMiner, whereas it is UTF-8 on RStudio. The Dat... Gianpaolo Coro
06:51 PM Task #5292 (In Progress): Destroy VM dev.d4science.org (not destroyed anymore)
I shut it down. I'll remove it next monday. It was crashed, btw.
Andrea Dell'Amico
04:11 PM Task #5292 (Closed): Destroy VM dev.d4science.org (not destroyed anymore)
The VM dev.d4science.org can be destroyed, it is no longer necessary. Massimiliano Assante
02:44 PM Task #5256 (In Progress): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
The smart-executor is up and running Roberto Cirillo
11:42 AM Task #5256: Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Ok thanks Alessandro Pieve
11:41 AM Task #5256: Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
I think it's better to upgrade the Smartgears and smart-executor too. If you agree, I'm going to install the new vers... Roberto Cirillo
10:49 AM Task #5256: Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
no already updated Alessandro Pieve
10:41 AM Task #5256: Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Do you need also the "accounting-aggregator-se-plugin" plugin? Roberto Cirillo
09:59 AM Task #5256 (Closed): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204 Alessandro Pieve
10:34 AM Task #5128 (Closed): Please deploy smart-executor 1.4 on devNext
Roberto Cirillo
08:23 AM Support #5242 (Closed): publishing the "STEP_3___VPA_ICCAT_BFT_E_Projection" algorithm in the production environment
Pasquale Pagano

Sep 29, 2016

06:58 PM Support #5242: publishing the "STEP_3___VPA_ICCAT_BFT_E_Projection" algorithm in the production environment
it works well! thanks! TAHA IMZILEN
06:41 PM Support #5242 (Feedback): publishing the "STEP_3___VPA_ICCAT_BFT_E_Projection" algorithm in the production environment
They should be updated now. Gianpaolo Coro
06:29 PM Support #5242 (In Progress): publishing the "STEP_3___VPA_ICCAT_BFT_E_Projection" algorithm in the production environment
I'm going to publish the version that is currently running in the Prototyping environment. Gianpaolo Coro
06:01 PM Support #5242 (Closed): publishing the "STEP_3___VPA_ICCAT_BFT_E_Projection" algorithm in the production environment
Could you please publish in the production environment (ICCAT_BFT-E VRE) the version of "STEP_3___VPA_ICCAT_BFT_E_Pro... TAHA IMZILEN
06:47 PM Incident #5241 (Closed): Environmental layers not visible in RPrototypingLab
It works! I guess the same issue is in the Dev environment. Could you please fix it there too? Gianpaolo Coro
06:41 PM Incident #5241 (Feedback): Environmental layers not visible in RPrototypingLab
The problem was in scope configurations inside the GN database.
I Fixed it and checked via console the metadata acce...
Fabio Sinibaldi
06:40 PM Incident #5241 (In Progress): Environmental layers not visible in RPrototypingLab
Fabio Sinibaldi
06:22 PM Incident #5241: Environmental layers not visible in RPrototypingLab
I have published the layers at VO level-gCubeApps (SCOPE) and I can see them if I make a query from a client.
We sh...
Gianpaolo Coro
05:46 PM Incident #5241: Environmental layers not visible in RPrototypingLab
Hi Gianpaolo,
using GeoExplorer in the VRE RPrototypingLab it's displaying only 1368 layers (see the screenshot) b...
Francesco Mangiacrapa
05:07 PM Incident #5241 (Closed): Environmental layers not visible in RPrototypingLab
The GeoExplorer in the RPrototypingLab does not find the environmental layers that have been published at VO level. T... Gianpaolo Coro
04:33 PM Support #5130 (Closed): Add applications to the prototyping VRE
done and updated logo Massimiliano Assante
04:31 PM Support #5130 (In Progress): Add applications to the prototyping VRE
Massimiliano Assante
02:26 PM Support #5130: Add applications to the prototyping VRE
Moved to higher priority due to the switch of the users from the devVRE to the Proto VRE. Gianpaolo Coro
04:19 PM Support #5236 (Closed): publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
it works now! thank you ... TAHA IMZILEN
04:11 PM Support #5236: publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
I guess you have a browser caching. Could you please logout+ press SHIFT+F5 and click this link?
~~~
https://i-ma...
Gianpaolo Coro
04:06 PM Support #5236: publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
no, sorry! Nothing has changed. TAHA IMZILEN
04:02 PM Support #5236: publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
Could you please logout and get in again? Gianpaolo Coro
03:49 PM Support #5236: publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
no sorry, i don't find it in the ICCAT_BFT-E VRE . TAHA IMZILEN
03:38 PM Support #5236 (Feedback): publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
Done, please check if it works. Gianpaolo Coro
03:17 PM Support #5236: publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
Dear Gianpaolo, yes i did not re-created the algorithm, i want to publish the version currently installed in the Rpro... TAHA IMZILEN
03:11 PM Support #5236: publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
Dear Taha, could you please confirm that you did not re-created the algorithm, i.e. that you want the version that is... Gianpaolo Coro
03:00 PM Support #5236 (Closed): publishing the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm in the production environment
Could you please publish in the production environment (ICCAT_BFT-E VRE) the "Whole_Steps_VPA_ICCAT_BFT_E" algorithm ... TAHA IMZILEN
04:17 PM Support #5159 (Closed): Dataminer in the BiodiversityLab VRE
Massimiliano Assante
04:07 PM Support #5159 (In Progress): Dataminer in the BiodiversityLab VRE
Massimiliano Assante
02:25 PM Support #5159: Dataminer in the BiodiversityLab VRE
Switched to higher priority due to the next demonstration to be done at the SeaDataNet conference. Gianpaolo Coro
03:43 PM Task #4984: Create new VM to host new Resource Registry
I'm ready to set the new properties, now that the orientdb cluster is active. Andrea Dell'Amico
03:41 PM Task #3475: Add 2 OrientDB instances
The java heap is now configurable. I've set it to 2048MB.
Andrea Dell'Amico
12:56 PM Task #3475 (Feedback): Add 2 OrientDB instances
Done. The hook has been installed, the configuration updated, the services restarted.
Andrea Dell'Amico
12:19 PM Task #3475: Add 2 OrientDB instances
Andrea Dell'Amico wrote:
> The playbook is ready and the configuration seems corret. We have errors on the hooks, be...
Luca Frosini
02:52 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
I have organised the DataMiner pom in order to limit the spread of dependencies and to detect the libraries that shou... Gianpaolo Coro
02:51 PM Support #5234 (Closed): svn.madgik.di.uoa.gr authentication issues
I'm experiencing a strange behaviour with madgik svn repository. To my knowledge, the access to the repository is pro... Gabriele Giammatteo
12:58 PM Task #5227 (Closed): Enable SSL on the orientdb instances
See http://orientdb.com/docs/2.2.x/Using-SSL-with-OrientDB.html
Andrea Dell'Amico
12:01 PM Task #5215 (Closed): Social Networking facilities required in devVRE
done https://dev.d4science.org/group/devvre/home Massimiliano Assante
09:59 AM Task #5215: Social Networking facilities required in devVRE
Yes, at least I would like to create a post that should go to all the users registered on the dev.d4science.org portal. Gianpaolo Coro
09:24 AM Task #5215: Social Networking facilities required in devVRE
You mean on devVRE of dev.d4science.org?
Massimiliano Assante

Sep 28, 2016

10:09 PM Task #5215 (Closed): Social Networking facilities required in devVRE
Since we have moved the algorithms development environment to the production environment, the social networking facil... Gianpaolo Coro
07:31 PM Task #5178: Enable caching of static content (images) on gateway production cluster
Done on every instance.
Andrea Dell'Amico
06:31 PM Task #5178: Enable caching of static content (images) on gateway production cluster
please change the expiration time from 1 day to 1 month Massimiliano Assante
03:47 PM Task #5178: Enable caching of static content (images) on gateway production cluster
Done. Sorry for the disservice.
Andrea Dell'Amico
01:44 PM Task #5178: Enable caching of static content (images) on gateway production cluster
yes please, tell me when it's done Massimiliano Assante
07:13 PM Task #3475: Add 2 OrientDB instances
We also need to tweak the java heap configuration. Andrea Dell'Amico
07:10 PM Task #3475: Add 2 OrientDB instances
The playbook is ready and the configuration seems corret. We have errors on the hooks, because we didn't create the r... Andrea Dell'Amico
04:42 PM Task #5210 (Closed): Dismiss iisg-ldap.research-infrastructures.eu
I've shut down the VM. Its configuration is still available if a need arises.
Andrea Dell'Amico
04:41 PM Task #5210 (Closed): Dismiss iisg-ldap.research-infrastructures.eu
The VM was a slave ldap server for the socialhistoryservices (HOPE) project.
It never had a connection in a while, a...
Andrea Dell'Amico
04:38 PM Task #5209 (Closed): Dismiss auth2.research-infrastructures.eu
The VM has been shut down.
Andrea Dell'Amico
04:38 PM Task #5209 (Closed): Dismiss auth2.research-infrastructures.eu
The VM wanted to be a redundancy server for auth1.research-infrastructures.eu but no service is installed on it. Andrea Dell'Amico
04:35 PM Task #5180 (Closed): New playbook that installs the authorization service
The playbook works. It has been tested on the dev authorization server.
Andrea Dell'Amico

Sep 27, 2016

07:32 PM Task #5178 (Feedback): Enable caching of static content (images) on gateway production cluster
The new configuration is active on dev and preprod. Let me know if it can be provisioned on production too.
Andrea Dell'Amico
06:52 PM Task #5178 (In Progress): Enable caching of static content (images) on gateway production cluster
I'm going to test in dev, than preproduction. Andrea Dell'Amico
05:59 PM Task #5178 (Closed): Enable caching of static content (images) on gateway production cluster
nginx should cache static content (images) of course the cache should expire after some time Massimiliano Assante
07:22 PM Task #5139 (In Progress): New VM for hosting a new istance of tabulardata service
tabulardata2.d4science.org running with smartgears and postgresql, no database. Tommaso Piccioli
06:25 PM Task #5180 (In Progress): New playbook that installs the authorization service
The playbook is ready to be tested.
Andrea Dell'Amico
06:24 PM Task #5180 (Closed): New playbook that installs the authorization service
nginx/tomcat are needed. https too.
The authorization service needs a postgresql backend, and pgpool before postgr...
Andrea Dell'Amico
06:16 PM Task #5179 (Closed): Implement the new container.xml configuration needed by the authorization service in the ansible roles
Done. The new smartgears is running on node17.d4science.org and node19.d4science.org.
Andrea Dell'Amico
06:15 PM Task #5179: Implement the new container.xml configuration needed by the authorization service in the ansible roles
The container.xml file is now assembled from three different parts. The first and the last are pieces of the old temp... Andrea Dell'Amico
06:11 PM Task #5179 (Closed): Implement the new container.xml configuration needed by the authorization service in the ansible roles
smartgears need a totally different configuration procedure.
Andrea Dell'Amico
03:34 PM Task #5169 (Closed): Prepare environment to test Generic Worker on Dataminer
Some machines are required to finally test the porting of GW on Dataminer.
First, the installation of Dataminer run...
Gianpaolo Coro
03:01 PM Task #4610: Algorithms installation in D4Science

| | | | | | |
|---|:---:|:---:|:---:|:---|---|
| Algorithm|Author|Category|Deploy|Install|Note|
| ICHTHYOP_MODEL...
Giancarlo Panichi
02:07 PM Task #5162 (Closed): Disable firewall in node74.d4science.org
Data streaming seems working. Fabio Sinibaldi
12:54 PM Task #5162 (Feedback): Disable firewall in node74.d4science.org
Andrea Dell'Amico
12:54 PM Task #5162 (In Progress): Disable firewall in node74.d4science.org
Andrea Dell'Amico
12:46 PM Task #5162: Disable firewall in node74.d4science.org
Instead of disabling it, I'm going to open the resultset ports range (3000,3050). Andrea Dell'Amico
12:13 PM Task #5162 (Closed): Disable firewall in node74.d4science.org
The portlet is unable to open resultsets initialized from server running in node7.d4science.org.
Cause : %org.gcube...
Fabio Sinibaldi
11:47 AM Support #5159 (Closed): Dataminer in the BiodiversityLab VRE
Is it possible to put the Dataminer portlet in the BiodiversityLab VRE, leaving the StatMan portlet visible to VRE Ma... Gianpaolo Coro
10:46 AM Task #5128: Please deploy smart-executor 1.4 on devNext
There was a very old smart-executor on nexus (26 May). Now, I've successfully installed the new smart-executor on nod... Roberto Cirillo
09:42 AM Task #5128: Please deploy smart-executor 1.4 on devNext
The problem is that the smart-executor installed is not compatible with smartgears-2.0.0, it brings old versions of s... Lucio Lelii
10:34 AM Task #4617 (Feedback): Smart-executor- node24.d4science.org: Too Many Open Files
The new social-data-indexer-plugin which is going to be released in gcube 4.1 works as expected. Connections pool are... Costantino Perciante

Sep 26, 2016

06:26 PM Task #5128: Please deploy smart-executor 1.4 on devNext
The following nodes have been upgraded to Smartgears 2.0.0-SNAPSHOT and smart-executor-service 1.4.0-SNAPSHOT:
~~...
Roberto Cirillo
02:36 PM Task #5128 (In Progress): Please deploy smart-executor 1.4 on devNext
Roberto Cirillo
03:48 PM Task #4919: Enhance raster data metadata for the data catalogue
The Thredds layers should be 591 in the dev. environment. The VLIZ layers are 8. I don't know where the discrepancy o... Gianpaolo Coro
03:45 PM Task #5147 (Closed): smart-generic-worker: jar-with-dependencies.jar is missing in gCube Snapshots Repository
Gianpaolo Coro
03:44 PM Task #5147 (In Progress): smart-generic-worker: jar-with-dependencies.jar is missing in gCube Snapshots Repository
The plugin to generate the jar with dependencies had been deleted for unknown reason. Gianpaolo Coro
03:23 PM Task #5147 (Closed): smart-generic-worker: jar-with-dependencies.jar is missing in gCube Snapshots Repository
Please could you deploy the smart-generic-worker (jar-with-dependencies) in gCube Snapshots ?
From nexus, I see on...
Roberto Cirillo
03:23 PM Task #5146 (Closed): Reloading Tomcat classpath
In order to move towards a fully automatic installation of the Dataminer algorithms, the classpath of a Tomcat servic... Gianpaolo Coro
12:06 PM Task #5139 (Closed): New VM for hosting a new istance of tabulardata service
The new VM should have a container smartgears, the same
resources of tabulardata.d4science.org VM (with the same P...
Roberto Cirillo
10:02 AM Task #5127 (Closed): mongo.p: full resynch is needed
The resync has been completed successfully.
The space used by Mongo has been reduced from over 750 GB to 358 GB. Thi...
Roberto Cirillo

Sep 23, 2016

07:10 PM Task #3475: Add 2 OrientDB instances
I'm assembling a oriendb ansible role to provision all the pieces.
Andrea Dell'Amico
06:30 PM Support #5130 (Closed): Add applications to the prototyping VRE
The following applications should be available in the RPrototypeLab VRE, in order to let users try to combine their p... Gianpaolo Coro
06:15 PM Task #5123 (Closed): deploy patch fixing short URLs issue for data-miner and stat. alg importer portlets on production gateways
The application is generally OK, but a random effect was observed. For shared folders, the Workspace path is not corr... Gianpaolo Coro
02:22 PM Task #5123 (Feedback): deploy patch fixing short URLs issue for data-miner and stat. alg importer portlets on production gateways
@g.panichi@isti.cnr.it @gianpaolo.coro@isti.cnr.it please test the applications and close the ticket if everything is ok Massimiliano Assante
02:05 PM Task #5123 (Closed): deploy patch fixing short URLs issue for data-miner and stat. alg importer portlets on production gateways
patch fixing short URLs issue implies to update:
* statistical-algorithms-importer version/ build 1.2.0-4.0.0-1316...
Massimiliano Assante
06:04 PM Incident #5104 (Closed): Use long URLs in produced WPS http links
Now, a new version of SAI and Data Miner is released into production.
These versions use the standard http link and ...
Giancarlo Panichi
05:58 PM Task #5127 (In Progress): mongo.p: full resynch is needed
Roberto Cirillo
03:21 PM Task #5127 (Closed): mongo.p: full resynch is needed
In order to prevent disk reaching 100% full, it's need a full resynch of mongoDB data storage.
By resyncing, all the...
Roberto Cirillo
04:50 PM Task #5128 (Closed): Please deploy smart-executor 1.4 on devNext
Luca Frosini

Sep 22, 2016

05:23 PM Incident #5118 (Closed): VRE Logo not updated when VRE_Manager or Administrator changes it
Massimiliano Assante
05:02 PM Incident #5118 (Closed): VRE Logo not updated when VRE_Manager or Administrator changes it
Massimiliano Assante
02:22 PM Task #4879 (Closed): Re-harvesting of FAO Geonetwork products
Many thanks Emmanuel Blondel
02:18 PM Task #4879: Re-harvesting of FAO Geonetwork products
Fao Layers are now available on D4Science Data Catalogue: https://i-marine.d4science.org/group/imarine-gateway/data-c... Francesco Mangiacrapa
12:56 PM Task #4919: Enhance raster data metadata for the data catalogue
Harvester for /gcube/devsec has been created using the following configuration:
~~~
{ "version": "2.6", "cql": "A...
Francesco Mangiacrapa
11:55 AM Support #5103 (Closed): access to git ansible repo
I actually had to login with my email address. Anyway, after resetting my password I could easily login. Thanks! Daniele Pavia
11:08 AM Support #5103: access to git ansible repo
Daniele Pavia wrote:
> Thanks Andrea,
> unfortunately I can't access. The account seems to be active, but I get an ...
Andrea Dell'Amico
11:02 AM Support #5103 (In Progress): access to git ansible repo
Thanks Andrea,
unfortunately I can't access with daniele-pavia/changeitasap. The account seems to be active, but I g...
Daniele Pavia

Sep 21, 2016

06:15 PM Task #5105: Enable WebSocket support on nginx for infrastructure gateway
so far so good, but I'll wait some days and more testing to close the task Massimiliano Assante
05:03 PM Task #5105 (Feedback): Enable WebSocket support on nginx for infrastructure gateway
I've possibly found a generic solution. Now running on dev2.d4science.org.
The details:
~~~
map $http_upgrade ...
Andrea Dell'Amico
04:26 PM Task #5105 (In Progress): Enable WebSocket support on nginx for infrastructure gateway
Andrea Dell'Amico
04:25 PM Task #5105: Enable WebSocket support on nginx for infrastructure gateway
RIght now the situation is the following:
* haproxy already transparently manages the websocket connections
* ngi...
Andrea Dell'Amico
04:10 PM Task #5105: Enable WebSocket support on nginx for infrastructure gateway
url for testing: wss://next.d4science.org/workspace-6.14.0-SNAPSHOT/downloadfolder Massimiliano Assante
04:08 PM Task #5105 (Closed): Enable WebSocket support on nginx for infrastructure gateway
WebSocket is a protocol providing full-duplex communication channels over a single TCP connection. It basically allow... Massimiliano Assante
06:07 PM Support #5103 (Feedback): access to git ansible repo
Andrea Dell'Amico
05:57 PM Support #5103 (In Progress): access to git ansible repo
Andrea Dell'Amico
03:55 PM Support #5103 (Closed): access to git ansible repo
Hi,
as per conversation with Roberto Cirillo, I'd like to have access to the ansible repo to take a look at what's b...
Daniele Pavia
04:00 PM Incident #5104 (Closed): Use long URLs in produced WPS http links
The WPS http links are being produced (by the Show button) using short http links. This causes the processes to fail,... Gianpaolo Coro

Sep 20, 2016

08:04 PM Task #5034 (Closed): Deploy Register VRE Users portlet on production gateways
Pasquale Pagano
04:15 PM Task #4888 (Closed): Upgrade VRE Modeler Functionality Resource to include Data Miner and RStudio
Roberto Cirillo
03:54 PM Support #4871 (Closed): Making public some selected pages of Redmine Wiki
Since now the entire BlueBRIDGE Wiki is public thanks to @pasquale.pagano@isti.cnr.it Leonardo Candela
12:54 PM Task #4879: Re-harvesting of FAO Geonetwork products
Ok please let me know when done, afterwhat we will close this ticket. Emmanuel Blondel
12:44 PM Task #4879: Re-harvesting of FAO Geonetwork products
At the moment, Fao products are available on CKAN BB instance: https://ckan-bb.d4science.org/organization/fao.
CKAN...
Francesco Mangiacrapa
12:31 PM Task #4879: Re-harvesting of FAO Geonetwork products
I still don't see products in the data catalogue https://i-marine.d4science.org/group/imarine-gateway/data-catalogue,... Emmanuel Blondel
12:15 PM Task #4879 (Feedback): Re-harvesting of FAO Geonetwork products
Metadata has been harvested. Please provide feedback if needed or close this ticket if everything is ok. Fabio Sinibaldi
12:52 PM Support #4977 (Closed): publishing the "parallelized_STEP1_VPA_ICCAT_BFT_E_Retros" algorithm in the production environment
I assume the ticket can be closed, the algorithm is in the VRE Leonardo Candela
12:29 PM Support #4922 (Closed): AquaMaps / data not loading
Closing this ticket as the issue is not present anymore. Please re open it if needed. Fabio Sinibaldi
12:18 PM Task #4984: Create new VM to host new Resource Registry
The VM is active, smartgears and resource-registry installed. The resource-registry app cannot work yet, we need to c... Andrea Dell'Amico
11:53 AM Upgrade #5082: D4Science Gateways upgrade to gCube 4.1
* Add Logback classic xml configuration on all cluster nodes (and on portal-env settings)
* Copy cassandra-lucene-in...
Massimiliano Assante
11:50 AM Upgrade #5082 (Completed): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
11:51 AM Upgrade #5076: D4Science Infrastructure Upgrade to gCube 4.1
due to changes in a related task Massimiliano Assante
11:44 AM Upgrade #5076 (Completed): D4Science Infrastructure Upgrade to gCube 4.1
gCube 4.1 Upgrade plan of D4Science Infrastructure Massimiliano Assante
11:51 AM Upgrade #5083 (Completed): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
11:49 AM Upgrade #5081 (Completed): SmartArea VO upgrade to gCube 4.1
Massimiliano Assante
11:48 AM Upgrade #5080 (Completed): SoBigData VO upgrade to gCube 4.1
Massimiliano Assante
11:47 AM Upgrade #5079 (Completed): /gcube/preprod upgrade to gCube 4.1.0
Massimiliano Assante
11:46 AM Upgrade #5078 (Completed): gCubeApps VO upgrade to gCube 4.1
Massimiliano Assante
11:45 AM Upgrade #5077 (Completed): FARM VO upgrade to gCube 4.1
Massimiliano Assante

Sep 19, 2016

07:18 PM Task #5008 (Closed): Enable Infrastructure Gateway cluster on Production
it seems working, closing the ticket
~~~
17:14:57,303 INFO [liferay/search_writer/SYSTEM_ENGINE-1][EditServerActio...
Massimiliano Assante
06:59 PM Task #5008 (In Progress): Enable Infrastructure Gateway cluster on Production
We need Clustering Lucene Indexes on All Nodes of the cluster, as Liferay API methods use that index for instance to ... Massimiliano Assante
06:34 PM Task #5000 (Closed): Create new VM for hosting SmartExecutor service
Change the log level (smartgear log level set to warn)
Launch a test successfully.
Alessandro Pieve
05:44 PM Task #4984: Create new VM to host new Resource Registry
When an Orient client connect to a server retrieve the list of all node in the cluster. As s you notice if we set jus... Luca Frosini
05:25 PM Task #4984: Create new VM to host new Resource Registry
Luca Frosini wrote:
>
> In the future this service will be deployed in many instances. Each instance will use the ...
Andrea Dell'Amico
02:54 PM Task #4984 (In Progress): Create new VM to host new Resource Registry
hostname/IP shall be resourceregistry1-d-d4s.d4science.org 146.48.122.34.
Andrea Dell'Amico
04:13 PM Task #4959 (Closed): Migrate NKUA nodes from Ecosystem to /gcube/preprod
Kostas Kakaletris wrote:
> Kostas Kakaletris wrote:
> > The following VMs moved to Ubuntu 16.04 LTS, the scope was ...
Kostas Kakaletris
03:46 PM Incident #5069 (Closed): Increase the rstudio disk
50GB added. Andrea Dell'Amico
03:45 PM Incident #5069 (In Progress): Increase the rstudio disk
Andrea Dell'Amico
03:44 PM Incident #5069 (Closed): Increase the rstudio disk
rstudio.d4science.org needs more disk space.
I see that the users are accumulating data into their home directories.
Andrea Dell'Amico
01:13 PM Task #5051 (Closed): Change Nagios check from gCore container to Smartgears container
The correct port is 8080 Andrea Dell'Amico
01:05 PM Task #5051 (In Progress): Change Nagios check from gCore container to Smartgears container
Set up the check for the 9000 port. Andrea Dell'Amico
12:07 PM Task #5051: Change Nagios check from gCore container to Smartgears container
On port 9000?
Andrea Dell'Amico
12:04 PM Task #5051 (Closed): Change Nagios check from gCore container to Smartgears container
The following nodes are become Smartgears nodes:
~~~
dl18.di.uoa.gr
dl19.di.uoa.gr
dl20.di.uoa.gr
~~~
It's ...
Roberto Cirillo
11:32 AM Task #5049 (Closed): Change nagios service alert host name: thredds.research-infrastructures.eu
Done. Andrea Dell'Amico
11:27 AM Task #5049 (In Progress): Change nagios service alert host name: thredds.research-infrastructures.eu
Andrea Dell'Amico
09:54 AM Task #5049 (Closed): Change nagios service alert host name: thredds.research-infrastructures.eu
Please change nagios check hostname from:
~~~
thredds.research-infrastructures.eu
~~~
to:
~~~
thredds.d4s...
Roberto Cirillo
11:15 AM Task #5048 (Closed): thredds.d4science.org: increase fd max number
Done. The container needs a restart.
Andrea Dell'Amico
09:49 AM Task #5048 (Closed): thredds.d4science.org: increase fd max number
Currently the max file descriptor number is set to 1024. Please, increase it to 16000 Roberto Cirillo

Sep 17, 2016

11:27 AM Incident #5036 (Closed): Users Management portlet: exception during user removal
Panagiota Koltsida

Sep 16, 2016

06:44 PM Incident #5036: Users Management portlet: exception during user removal
If the fix has been implemented, please link the release ticket and close this one. Please remember that the time an ... Pasquale Pagano
02:02 PM Incident #5036: Users Management portlet: exception during user removal
This case is also taken under account now Panagiota Koltsida
12:42 PM Incident #5036: Users Management portlet: exception during user removal
Yes, the user was added without membership requests, please take this into account when removing a user. Massimiliano Assante
12:39 PM Incident #5036 (In Progress): Users Management portlet: exception during user removal
@massimiliano.assante@isti.cnr.it could you please clarify if the user you have tried to remove had been added to thi... Panagiota Koltsida
05:22 PM Task #5000 (Feedback): Create new VM for hosting SmartExecutor service
The VM is ready, smartgear and the smartexecutor plugins installed. They answer on port 80, there's a reverse proxy b... Andrea Dell'Amico
03:08 PM Task #5000: Create new VM for hosting SmartExecutor service
hostname and Ip are going to be: smartexecutor1-d-d4s.d4science.org 146.48.122.204 Andrea Dell'Amico
02:14 PM Task #5000: Create new VM for hosting SmartExecutor service
yes, a smartExecutor with only the aggregatorPlugin
Path Url plugin:
http://maven.research-infrastructures.eu/nex...
Alessandro Pieve
01:51 PM Task #5000: Create new VM for hosting SmartExecutor service
> Plugin for Smart Executor:
> <dependency>
> <groupId>org.gcube.accounting</groupId>
> <artifactId>accounting...
Andrea Dell'Amico
01:50 PM Task #5000 (In Progress): Create new VM for hosting SmartExecutor service
It's going a smart executor but not a generic worker, right? So no generic worker nor R packages.
Andrea Dell'Amico
03:23 PM Incident #5046 (Closed): Blocked ports between the Dataminers and the Workspace
Now it works, thanks! Gianpaolo Coro
02:45 PM Incident #5046 (Feedback): Blocked ports between the Dataminers and the Workspace
Done. Andrea Dell'Amico
02:37 PM Incident #5046 (In Progress): Blocked ports between the Dataminers and the Workspace
Andrea Dell'Amico
02:29 PM Incident #5046 (Closed): Blocked ports between the Dataminers and the Workspace
We have noticed that the Workspace client uses RMI communication when uploading a file to a shared folder. Since RMI ... Gianpaolo Coro
11:24 AM Task #4961 (Closed): Change the favicon of sobigdata.d4science.org
the favicon is taken from their favicon on sobigdata.eu website Massimiliano Assante

Sep 15, 2016

06:48 PM Task #4959: Migrate NKUA nodes from Ecosystem to /gcube/preprod
Kostas Kakaletris wrote:
> The following VMs moved to Ubuntu 16.04 LTS, the scope was changed to /gcube/preprod, jav...
Kostas Kakaletris
02:30 PM Task #5008 (Closed): Enable Infrastructure Gateway cluster on Production
Massimiliano Assante
12:56 PM Task #5034 (Feedback): Deploy Register VRE Users portlet on production gateways
The portlet was deployed on Sobigdata resource catalogue VRE, https://i-marine.d4science.org/group/resourcecatalogue/... Massimiliano Assante
10:50 AM Task #5034 (Closed): Deploy Register VRE Users portlet on production gateways
No server restart is needed. The portlet is needed for the resource catalogue VRE and what other VREs @leonardo.cande... Massimiliano Assante
12:49 PM Incident #5036 (Closed): Users Management portlet: exception during user removal
I selected a user, clicked on deleted selected without notification via email, the portlet popped up an error (but th... Massimiliano Assante

Sep 14, 2016

06:00 PM Task #5022 (Closed): Clustering Liferay’s Documents and Media Library in Production gateways
Andrea Dell'Amico
05:49 PM Task #5022 (Feedback): Clustering Liferay’s Documents and Media Library in Production gateways
NFS, for now. Steps:
* on dlibsan10.san.research-infrastructures.eu:
> * Installed `nfs-kernel-server`
> * Creat...
Andrea Dell'Amico
02:50 PM Task #5022 (In Progress): Clustering Liferay’s Documents and Media Library in Production gateways
Massimiliano Assante
02:36 PM Task #5022 (Closed): Clustering Liferay’s Documents and Media Library in Production gateways
Although we don't use Liferay’s Documents and Media Library in gCube, this is used by Liferay internals for storing s... Massimiliano Assante
04:44 PM Task #4984: Create new VM to host new Resource Registry
Resource Registry is a service like smart-executor.
The current service is divided in two services IS-Collector and ...
Luca Frosini
03:49 PM Task #4227 (Closed): Activate a VPN service to grant complete access to the servers network from outside
Andrea Dell'Amico
02:46 PM Task #5008 (In Progress): Enable Infrastructure Gateway cluster on Production
the Liferay’s Documents and Media Library should be "clustered" as well https://support.d4science.org/issues/5022 Massimiliano Assante

Sep 13, 2016

11:05 PM Incident #5013 (Closed): Zip files not compatible with Windows
the patch fixing the windows uncompress folder has been deployed in production, the other issue is tracked as a bug i... Massimiliano Assante
02:28 PM Incident #5013: Zip files not compatible with Windows
perhaps this post can help in solving the uncompress windows problem
http://superuser.com/questions/5155/how-to-cr...
Massimiliano Assante
02:24 PM Incident #5013: Zip files not compatible with Windows
the issue is twofold, one is this one (which i think cannot be fixed very soon), apart from this issue the other issu... Massimiliano Assante
02:22 PM Incident #5013 (In Progress): Zip files not compatible with Windows
Valentina Marioli
02:19 PM Incident #5013: Zip files not compatible with Windows
This is what should never happen. Let's try do fix it immediately to at least demonstrate that we are able to fix iss... Pasquale Pagano
12:34 PM Incident #5013: Zip files not compatible with Windows
My feeling (just speculating) is that the compression of the folder could take longer than expected and that then an ... Massimiliano Assante
12:32 PM Incident #5013: Zip files not compatible with Windows
and another
~~~
016-09-13 10:31:29,902 INFO server.GWTWorkspaceServiceImpl [http-bio-9090-exec-247,getNameForSp...
Massimiliano Assante
12:29 PM Incident #5013 (Closed): Zip files not compatible with Windows
We have been reported from participants of the ICES training course on Data-limited stock assessment that they are st... Massimiliano Assante
07:17 PM Task #5008 (Closed): Enable Infrastructure Gateway cluster on Production
Cluster composed by infra-gateway.d4s and infra-gateway1.d4s is now fully operational. Massimiliano Assante
06:00 PM Task #5008 (In Progress): Enable Infrastructure Gateway cluster on Production
together with this activity we are going to deploy a patch for fixing the unzip problem of workspace folder on Window... Massimiliano Assante
11:56 AM Task #5008: Enable Infrastructure Gateway cluster on Production
Yes, that's correct. The firewall rules are already active.
Andrea Dell'Amico
11:44 AM Task #5008: Enable Infrastructure Gateway cluster on Production
@andrea.dellamico@isti.cnr.it could you confirm the following:
* the network for Multicast Clustering Setting on ...
Massimiliano Assante
11:41 AM Task #5008 (Closed): Enable Infrastructure Gateway cluster on Production
infra-gateway1.d4science.org will be added to the cluster currently composed by the infra-gateway.d4science.org node ... Massimiliano Assante
12:48 PM Task #4865: Installing data analysis machine to develop prototypes
Andrea Dell'Amico wrote:
> ~~~
> Connecting...
> Updating IS on scope /d4science.research-infrastructures.eu
> ec...
Andrea Dell'Amico

Sep 12, 2016

05:58 PM Task #4987: Upgrade is-sweeper-se-plugin via Ansible
Is-Sweeper has been launched on /gcube/devNext (node 17). Waiting for clean smart-executor installation on node6 for ... Luca Frosini
05:40 PM Support #4998 (Closed): publishing the "Step_4_Vpa_Iccat_Bft_E_Report" algorithm in the production environment
The algorithm has been published both in the BFT-E and in the StockAssessment VREs. I have tested it with the default... Gianpaolo Coro
04:45 PM Support #4998 (In Progress): publishing the "Step_4_Vpa_Iccat_Bft_E_Report" algorithm in the production environment
Under installation Gianpaolo Coro
11:46 AM Support #4998 (Closed): publishing the "Step_4_Vpa_Iccat_Bft_E_Report" algorithm in the production environment
Could you please publish in the production environment the "Step_4_Vpa_Iccat_Bft_E_Report" algorithm which is current... TAHA IMZILEN
05:00 PM Task #5000 (Closed): Create new VM for hosting SmartExecutor service
The new VM should have the same
features as node06.d4science.org
and work on scope :devNext
Plugin for Smart Ex...
Alessandro Pieve
04:48 PM Task #4379 (Closed): Update Tomcat7 servers (server.xml) to add cluster configuration
thanks, now the 2 preprod nodes can communicate correctly. Massimiliano Assante
04:37 PM Task #4379: Update Tomcat7 servers (server.xml) to add cluster configuration
The nodes need to communicate via RMI too. Now that traffic is permitted. I changed the firewall rules both on prepro... Andrea Dell'Amico
03:15 PM Task #4379 (In Progress): Update Tomcat7 servers (server.xml) to add cluster configuration
I did add the tomcat and Liferay cluster configurations on preprod1 and preprod2. However some firewall is blocking t... Massimiliano Assante
04:41 PM Task #4909 (Closed): Enable Gateway email parser to connect every minute to pop.isti.cnr.it, 995
we are not having problems with Gateway email parser to connect every 2 minutes to pop.isti.cnr.it, 995 instead of o... Massimiliano Assante
04:40 PM Task #4891 (Closed): Create new dev portal based on liferay 6.2 dev2.d4science.org
Massimiliano Assante
03:25 PM Task #4449 (Closed): Authorise OAuth2 Redirect URLs for social logins on all the Production Sites
>so i think what we are looking at is an application for each platform.
which is not what we need, as a consequenc...
Massimiliano Assante
03:02 PM Task #4984: Create new VM to host new Resource Registry
I need smartgear container and the following service from snapshot
~~~
<dependency>
<groupId>org.gcube.informa...
Luca Frosini
12:07 PM Task #4984: Create new VM to host new Resource Registry
Luca Frosini wrote:
> Same resources of the actual IC VM in dev.
What's the IC's hostname?
Which software need...
Andrea Dell'Amico
11:34 AM Task #4984: Create new VM to host new Resource Registry
Same resources of the actual IC VM in dev. Luca Frosini
11:30 AM Task #4984: Create new VM to host new Resource Registry
please specify the characteristic of the VM. Thanks. Pasquale Pagano
12:46 PM Task #4865: Installing data analysis machine to develop prototypes
It seems that the only way to completely test this service is to have a new VRE in the production environment. Gianpaolo Coro

Sep 09, 2016

06:30 PM Task #4987 (Feedback): Upgrade is-sweeper-se-plugin via Ansible
The is-sweeper-plugin has been upgraded. @luca.frosini@isti.cnr.it please, could you activate the plugins? Roberto Cirillo
06:30 PM Task #4987 (In Progress): Upgrade is-sweeper-se-plugin via Ansible
Roberto Cirillo
05:00 PM Task #4987 (Closed): Upgrade is-sweeper-se-plugin via Ansible
The following nodes should be upgraded:
~~~
node6.d4science.org
node17.d4science.org
~~~
The new plugin vers...
Roberto Cirillo
04:35 PM Task #2174: Dataminer and Statistical Manager packages
install.packages("igraph")
Gianpaolo Coro
03:15 PM Task #4888 (Feedback): Upgrade VRE Modeler Functionality Resource to include Data Miner and RStudio
I've successfully created a new VRE in development environment: /gcube/devsec/RMinerDev with RStudio and Dataminer se... Roberto Cirillo
03:02 PM Task #4888 (In Progress): Upgrade VRE Modeler Functionality Resource to include Data Miner and RStudio
Roberto Cirillo
03:14 PM Task #4865 (Feedback): Installing data analysis machine to develop prototypes
Andrea Dell'Amico
03:13 PM Task #4865: Installing data analysis machine to develop prototypes
The ldap authentication needed by the r-connector is in place. Against the new ldap server, so this has to be tested ... Andrea Dell'Amico
02:49 PM Task #4865: Installing data analysis machine to develop prototypes
Andrea Dell'Amico wrote:
> I think only the LDAP configuration for rstudio is missing. In the meantime could you che...
Andrea Dell'Amico
01:28 PM Task #4865: Installing data analysis machine to develop prototypes
The smartgear configuration is
~~~
<container mode='online'>
<hostname>dataminer1-proto.d4science.org</hostn...
Andrea Dell'Amico
01:27 PM Task #4865: Installing data analysis machine to develop prototypes
I think only the LDAP configuration for rstudio is missing. In the meantime could you check if the dataminer jars are... Andrea Dell'Amico
02:46 PM Task #1275 (Closed): Nagios check for our smtp relay server
Andrea Dell'Amico
02:45 PM Task #4917 (Closed): Update Dataminer Ansible installation
Andrea Dell'Amico
10:59 AM Task #3475 (In Progress): Add 2 OrientDB instances
We need to setup OrientDB cluster with the 3 VMs available Luca Frosini
10:57 AM Task #4984 (Closed): Create new VM to host new Resource Registry
Luca Frosini
10:24 AM Task #4889 (Closed): Deploy DataMiner service on new VRE gCubeApps/ICCAT_BFT-E
Roberto Cirillo

Sep 08, 2016

05:59 PM Support #4977 (Feedback): publishing the "parallelized_STEP1_VPA_ICCAT_BFT_E_Retros" algorithm in the production environment
Gianpaolo Coro
05:58 PM Support #4977: publishing the "parallelized_STEP1_VPA_ICCAT_BFT_E_Retros" algorithm in the production environment
I have installed the algorithm in the production environment. However, the one algorithm downloaded from the link you... Gianpaolo Coro
12:22 PM Support #4977 (Closed): publishing the "parallelized_STEP1_VPA_ICCAT_BFT_E_Retros" algorithm in the production environment

Could you please publish in the production environment the "parallelized_STEP1_VPA_ICCAT_BFT_E_Retros" algorithm wh...
TAHA IMZILEN
05:43 PM Task #4865: Installing data analysis machine to develop prototypes
Thanks. Andrea Dell'Amico
05:36 PM Task #4865: Installing data analysis machine to develop prototypes
you can put both contexts in the container.xml with the same list of scopes. Lucio Lelii
05:26 PM Task #4865: Installing data analysis machine to develop prototypes
@lucio.lelii@isti.cnr.it @roberto.cirillo@isti.cnr.it I need your help with the smartgears contexts configuration. Th... Andrea Dell'Amico
11:40 AM Task #4865 (In Progress): Installing data analysis machine to develop prototypes
Andrea Dell'Amico
03:05 PM Task #4842 (In Progress): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
Andrea Dell'Amico
12:24 PM Task #2353 (Closed): upgrade all devsec node with components released in 3.10
Roberto Cirillo
12:21 PM Task #4733 (Closed): Remove node74.d4science.org from smart-executor ganglia cluster
Roberto Cirillo
12:21 PM Task #4733 (In Progress): Remove node74.d4science.org from smart-executor ganglia cluster
Roberto Cirillo
12:14 PM Task #4917 (Feedback): Update Dataminer Ansible installation
The playbook has been modified.
Andrea Dell'Amico
11:41 AM Task #4917 (In Progress): Update Dataminer Ansible installation
Andrea Dell'Amico
12:03 PM Task #4970 (Closed): create a new node for dev infrastructure
collector-dev.d4science.org created with the gcube1 user. Tommaso Piccioli
10:44 AM Task #4970 (Closed): create a new node for dev infrastructure
create a new node for dev infrastructure copying the user gcube1 from collector-pre.d4science.org Lucio Lelii
11:44 AM Support #4967 (Closed): scope filter on pre-production infrastructure monitoring is not working correctly
Roberto Cirillo
11:43 AM Support #4967 (In Progress): scope filter on pre-production infrastructure monitoring is not working correctly
The registration request was blocked in the registry queue. After the restart of the registry service, the container ... Roberto Cirillo
 

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