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From Oct 08, 2016 to Nov 06, 2016

Nov 04, 2016

07:56 PM Task #5656 (Closed): backup the accounting postgresql instance(s)
A backup of one of the two instances is sufficient.
Here we do not run a daily backup script because the WAL archivi... Andrea Dell'Amico
07:51 PM Task #5655 (Closed): Backup db-gateway.d4science.org
The postgresql backups live here: `/var/lib/pgsql/backups/`.
It's the right opportunity to test the procedure descri... Andrea Dell'Amico
07:43 PM Task #5653 (Closed): Do not store the user token inside the get-scopes script
Fixed the second part too.
 Andrea Dell'Amico
06:18 PM Task #5653 (In Progress): Do not store the user token inside the get-scopes script
I just pushed a commit for the first part. Now working on the second one.
 Andrea Dell'Amico
06:17 PM Task #5653 (Closed): Do not store the user token inside the get-scopes script
Right now we are storing the user token inside the get-scopes script. This is a security problem and it means that an... Andrea Dell'Amico
07:41 PM Incident #5654 (Closed): HomeLibrary webapp: PermGen OutOfMemory
The VM has been restarted. There was a problem at boot time because the main dns server inside /etc/resolv.conf was w... Andrea Dell'Amico
06:33 PM Incident #5654 (In Progress): HomeLibrary webapp: PermGen OutOfMemory
Reconfigured to give it 6GB of ram. A reboot is required Andrea Dell'Amico
06:25 PM Incident #5654 (Closed): HomeLibrary webapp: PermGen OutOfMemory
It's need to increase the PermGen space and the RAM on HomeLibrary webapp:
~~~
node76.p.d4science.research-infras... Roberto Cirillo
07:37 PM Incident #5646 (Feedback): [Uri-resolver] Old smp uri sometimes fail
I've fixed the problem on the storage-manager library. It's need further tests to ensure that the problem is fixed pr... Roberto Cirillo
11:53 AM Incident #5646 (In Progress): [Uri-resolver] Old smp uri sometimes fail
Roberto Cirillo
11:24 AM Incident #5646 (Closed): [Uri-resolver] Old smp uri sometimes fail
Sometimes, when I try to download a file through uri-resolver by a old smp uri format, the file is not correctly down... Roberto Cirillo
05:14 PM Task #5652 (Closed): VRE FunctionalityResource to be updated in every VO
The VRE FunctionalityResource has been updated on gCubeApps by removing the service Authorisation and adding the Jack... Massimiliano Assante
03:24 PM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
Oh, ok. So, in production is hides almost all the bar... this is severe! Nikolas Laskaris
03:21 PM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
the css is not different, the fact is that in preprod there are so many portlets together that the navigation meno is... Massimiliano Assante
03:11 PM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
I now notice that it's hiding a significant part of the menu!!! On preprod it was not that much noticeable. (there's ... Nikolas Laskaris
03:06 PM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
No, this modification (just a single conflicting line on a css) has not been included in 4.1, because it was made aft... Nikolas Laskaris
03:01 PM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
I Think @laskarisn@di.uoa.gr has fixed the issue with the margin and had managed to included in the 4.1 release. Nik... Panagiota Koltsida
02:52 PM Task #5617 (Feedback): iSearch enhancement: deploy index-search and harvester portlets
@p.koltsida@di.uoa.gr
the index-search portlet is already deployed since the upgrade on iSearch https://services.... Massimiliano Assante
02:42 PM Task #5617 (In Progress): iSearch enhancement: deploy index-search and harvester portlets
Massimiliano Assante
01:24 PM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
@leonardo.candela@isti.cnr.it definitely we should enable some data sources. We are now in the phase of identifying ... Panagiota Koltsida
09:48 AM Task #5617: iSearch enhancement: deploy index-search and harvester portlets
Shall we identify a list of sources to populate the "data space", @p.koltsida@di.uoa.gr do you have any initial list?... Leonardo Candela
02:40 PM Task #5358 (Closed): Portlet resources
Massimiliano Assante
02:40 PM Task #5359 (Closed): Endpoint access
this task was completed a while ago Massimiliano Assante
01:26 PM Incident #5634 (Closed): Wrong IC client library versions on Nexus
OK Gianpaolo Coro
12:34 PM Incident #5634 (Feedback): Wrong IC client library versions on Nexus
it seems to be possible but only modifying the underlying filesystem [1] in the our Nexus version. However, now that ... Gabriele Giammatteo
11:47 AM Incident #5634: Wrong IC client library versions on Nexus
Gabriele Giammatteo wrote:
> For the future, I double checked the integration scripts and verified that wrong versio... Roberto Cirillo
10:13 AM Incident #5634: Wrong IC client library versions on Nexus
For the future, I double checked the integration scripts and verified that wrong versions are not created. In order t... Gabriele Giammatteo
01:22 PM Incident #5645: Service EP Retrieval issue
Update: we have seen that the scope managed by DataMiner is correct but the Service EP is searched elsewhere sometime... Gianpaolo Coro
11:44 AM Task #5551 (Closed): Produce Release Notes for gCube 4.1.0
Gabriele Giammatteo
11:32 AM Incident #5638: Check data availability through URI Resolver
I've created another ticket for the specific problem with the old smp uri reported by @gianpaolo.coro@isti.cnr.it : #... Roberto Cirillo
11:13 AM Incident #5638: Check data availability through URI Resolver
I made same tests with three types of files.
The first file is 15 Mb and I made 1000 attempts with concurrency set... Pasquale Pagano
10:35 AM Incident #5638 (Rejected): Check data availability through URI Resolver
Since this issue requires further investigation and is possibly related to other issues than concurrency, I close it ... Gianpaolo Coro
09:58 AM Incident #5638 (In Progress): Check data availability through URI Resolver
ab simulates high traffic but does not download the file. You can test also with less calls and concurrency. I wanted... Gianpaolo Coro
09:40 AM Incident #5638 (Rejected): Check data availability through URI Resolver
At this time we are not able to handle 1000 requests, with 500 requests running concurrently for the same file.
Is ... Roberto Cirillo
11:27 AM Support #5635 (Closed): gCube Releases portlet does not display
it works now, @gabriele.giammatteo@eng.it please update the release page
https://services.d4science.org/group/d4... Massimiliano Assante
10:08 AM Support #5635 (Feedback): gCube Releases portlet does not display
@massimiliano.assante@isti.cnr.it you can use following build in oder to update the porltet in production. Let me kno... Francesco Mangiacrapa
09:43 AM Incident #5626 (Closed): SAI does not save files
Roberto Cirillo

Nov 03, 2016

11:02 PM Incident #5626 (Resolved): SAI does not save files
Gianpaolo Coro
05:12 PM Incident #5626 (Feedback): SAI does not save files
Roberto Cirillo
10:57 AM Incident #5626 (In Progress): SAI does not save files
Valentina Marioli
08:11 PM Incident #5645 (Closed): Service EP Retrieval issue
On DataMiner, after the start of the service I can run
an algorithm several times (e.g. BiOnym), which takes the p... Gianpaolo Coro
07:54 PM Incident #5638: Check data availability through URI Resolver
I have done some stress tests, since the link was working again this afternoon.
On the access-d.d4science.org mach... Gianpaolo Coro
02:45 PM Incident #5638 (Rejected): Check data availability through URI Resolver
Sequential access to this file http://goo.gl/FcnUc0 (FishBase taxonomic file) fails. Concurrent access seems to syste... Gianpaolo Coro
06:02 PM Support #5635: gCube Releases portlet does not display
The problem is due to a different signature (from compile time to run time, so found on the portal) per a method of t... Francesco Mangiacrapa
05:46 PM Support #5635 (In Progress): gCube Releases portlet does not display
Francesco Mangiacrapa
12:35 PM Support #5635 (Closed): gCube Releases portlet does not display

https://services.d4science.org/group/d4science.research-infrastructures.eu/releases
here' is the exception
~~... Massimiliano Assante
05:44 PM Task #4109: enable Accounting on the 3.11 infrastructure
This ticket is related to its parent ticket that was created to track the deployment of the preprod infrastructure ba... Daniele Pavia
04:53 PM Incident #5634: Wrong IC client library versions on Nexus
yes it comes out when the dependencies of DataMiner are downloaded during the creation of the Web app. Gianpaolo Coro
04:35 PM Incident #5634 (In Progress): Wrong IC client library versions on Nexus
So, I found other few components with this "exotic" versioning (i.e. common-scope, registry-publisher), but only the ... Gabriele Giammatteo
12:26 PM Incident #5634 (Closed): Wrong IC client library versions on Nexus
In the staging Maven repository, ic-client versions are present, which have not been released (ic-client-1.0.1-None, ... Gianpaolo Coro
02:43 PM Task #5590: DataMiner as Generic Worker
The library has been replaced on all the dataminer servers. Andrea Dell'Amico
11:43 AM Task #5590: DataMiner as Generic Worker
I have some issues at testing, due to some IS client library problem. Gianpaolo Coro
02:42 PM Task #5565 (Closed): Create a cronjob for restarting thredds.d4science.org
Done. Andrea Dell'Amico
02:34 PM Task #5637 (Closed): request https certificate for exploratories.d4science.org
Massimiliano Assante
01:50 PM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
OK, I'll find a way.
 Andrea Dell'Amico
01:38 PM Task #5636 (Closed): Create New VM exploratories.d4science.org
The VM should e equipped with a SmartGears Distro hosting static web content.
Please note that also An https certi... Massimiliano Assante
11:49 AM Task #5533 (In Progress): Prometheus and Grafana investigation
Alessandro Pieve
10:36 AM Task #4414: New server for the Broker Service
Paolo says to suspend the ticket for a couple of days, he has to perform a demo.
(Probably it will be necessary to... Michele Artini
10:07 AM Upgrade #5529 (Completed): D4Science Root VO upgrade to gCube 4.1.0
Roberto Cirillo
10:06 AM Upgrade #5529 (In Progress): D4Science Root VO upgrade to gCube 4.1.0
Roberto Cirillo
10:06 AM Upgrade #5529 (Planned): D4Science Root VO upgrade to gCube 4.1.0
Roberto Cirillo
10:04 AM Upgrade #5081 (Completed): SmartArea VO upgrade to gCube 4.1
Roberto Cirillo
10:04 AM Upgrade #5081 (In Progress): SmartArea VO upgrade to gCube 4.1
Roberto Cirillo
10:04 AM Upgrade #5081 (Planned): SmartArea VO upgrade to gCube 4.1
Roberto Cirillo
10:03 AM Upgrade #5080 (Completed): SoBigData VO upgrade to gCube 4.1
Roberto Cirillo
10:03 AM Upgrade #5080 (In Progress): SoBigData VO upgrade to gCube 4.1
Roberto Cirillo
10:03 AM Upgrade #5080 (Planned): SoBigData VO upgrade to gCube 4.1
Roberto Cirillo
10:02 AM Upgrade #5078 (In Progress): gCubeApps VO upgrade to gCube 4.1
Roberto Cirillo
10:02 AM Upgrade #5078 (Planned): gCubeApps VO upgrade to gCube 4.1
Roberto Cirillo
09:57 AM Upgrade #5077 (Completed): FARM VO upgrade to gCube 4.1
Roberto Cirillo
09:56 AM Upgrade #5077 (In Progress): FARM VO upgrade to gCube 4.1
Roberto Cirillo

Nov 02, 2016

10:18 PM Task #5595: Provide a new VM for a smart-executor instance
Done. Andrea Dell'Amico
06:20 PM Task #5595: Provide a new VM for a smart-executor instance
Could you add the node above to the nagios check list, please? Roberto Cirillo
10:18 PM Task #5596: Provide a new VM for a smart-executor instance
Done. Andrea Dell'Amico
05:59 PM Task #5596: Provide a new VM for a smart-executor instance
Could you add the node above to the nagios check list, please? Roberto Cirillo
09:43 PM Task #5590: DataMiner as Generic Worker
Fixed. It works now.
 Andrea Dell'Amico
06:32 PM Task #5590: DataMiner as Generic Worker
Nothing responds to the indicated proxy (503 Service Unavailable), e.g.
http://dataminer-genericworkers.d4science.... Gianpaolo Coro
06:10 PM Task #5590 (Feedback): DataMiner as Generic Worker
The three nodes are online. They are behind `dataminer-genericworkers.d4science.org` for both http and https.
 Andrea Dell'Amico
05:04 PM Task #5590: DataMiner as Generic Worker
Provisioning is running. When ready, I'll update the haproxy configuration.
 Andrea Dell'Amico
03:43 PM Task #5590: DataMiner as Generic Worker
These are services that should run in the production environment, thus the scopes should be the same as the other Dat... Gianpaolo Coro
01:51 PM Task #5590 (In Progress): DataMiner as Generic Worker
Hostnames and IPs are going to be:
~~~
dataminer1-genericworkers.d4science.org 146.48.122.39
dataminer2-genericw... Andrea Dell'Amico
06:38 PM Task #4109: enable Accounting on the 3.11 infrastructure
This ticket is unclear. Please specify the work that has been done and the software to add to the upcoming release 4.2 Pasquale Pagano
09:35 AM Task #4109 (Closed): enable Accounting on the 3.11 infrastructure
will be deployed in future 4.x updates of the preprod. infrastructure Daniele Pavia
06:18 PM Incident #5626: SAI does not save files
This issue is indeed due to the Workspace. If I upload a file by explicitly overwriting the previous version of a fil... Gianpaolo Coro
06:10 PM Incident #5626 (Closed): SAI does not save files
In the new version of SAI, when the code is changed from the editor and the save button is pressed, the r script is n... Gianpaolo Coro
06:17 PM Task #5607 (Feedback): Deploy social-data-indexer-plugin
The plugin has been deployed Roberto Cirillo
05:43 PM Task #5607 (In Progress): Deploy social-data-indexer-plugin
Roberto Cirillo
11:06 AM Task #5607 (Closed): Deploy social-data-indexer-plugin
the plugin should be deployed on:
~~~
social-indexer.d4science.org
~~~
and it will run on the following scope... Roberto Cirillo
05:11 PM Task #5605 (Feedback): Deploy smart-aggregator-plugin
The new plugin has been deployed. Roberto Cirillo
04:48 PM Task #5605 (In Progress): Deploy smart-aggregator-plugin
Roberto Cirillo
10:36 AM Task #5605 (Closed): Deploy smart-aggregator-plugin
The new plugin should be deployed on:
~~~
accounting-aggregator.d4science.org
~~~
and it will run on the foll... Roberto Cirillo
05:08 PM Task #5382 (Closed): Endpoint access
Denis Pyriochos
03:59 PM Task #5382 (Feedback): Endpoint access
The required resources have been added. Roberto Cirillo
12:33 PM Task #5382 (In Progress): Endpoint access
Massimiliano Assante
05:07 PM Task #5381 (Closed): Endpoint access
Denis Pyriochos
03:58 PM Task #5381 (Feedback): Endpoint access
The required resources have been added. Roberto Cirillo
12:42 PM Task #5381 (In Progress): Endpoint access
Massimiliano Assante
05:06 PM Task #5383 (Closed): Endpoint access
Denis Pyriochos
04:00 PM Task #5383 (Feedback): Endpoint access
The required resources have been added. Roberto Cirillo
12:45 PM Task #5383 (In Progress): Endpoint access
Massimiliano Assante
04:21 PM Task #5616 (Closed): https certificate for gemex.d4science.org
Done.
 Andrea Dell'Amico
03:29 PM Task #5616 (Closed): https certificate for gemex.d4science.org
gemex.d4science.org will be another vhost to deploy on the infrastructure gateways Massimiliano Assante
04:20 PM Task #5618 (Closed): Add gemex.d4science.org to production HA Proxy (infra gateways)
added to the dns as infra-lb.d4science.org CNAME.
 Andrea Dell'Amico
03:36 PM Task #5618 (In Progress): Add gemex.d4science.org to production HA Proxy (infra gateways)
Andrea Dell'Amico
03:33 PM Task #5618 (Closed): Add gemex.d4science.org to production HA Proxy (infra gateways)
gemex.d4science.org will be another portal just like i-marine.d4science.org, descramble.d4science.org etc. Massimiliano Assante
03:44 PM Task #5619 (Closed): Production Gateways GEMex Site creation and Theme
Massimiliano Assante
03:32 PM Task #5617 (Closed): iSearch enhancement: deploy index-search and harvester portlets
Could you please deploy and make available the index-search and harvester portlets under the iSearch VRE?
- Harves... Panagiota Koltsida
03:24 PM Task #3712 (Closed): VRE Manager service on /gcube/devNext is missing
Massimiliano Assante
03:07 PM Task #5606 (Closed): Configure haproxy so that the authorization service connections are sticky
It works. The config lines added to the authorization backends are:
~~~
balance leastconn
stick-ta... Andrea Dell'Amico
11:14 AM Task #5606 (In Progress): Configure haproxy so that the authorization service connections are sticky
@lucio.lelii@isti.cnr.it I have a candidate solution to be tested. haproxy will use a table of source IPs, with entri... Andrea Dell'Amico
10:58 AM Task #5606 (Closed): Configure haproxy so that the authorization service connections are sticky
The authorization service does not use session cookies.
haproxy has to be configured to enable sticky sessions even ... Andrea Dell'Amico
02:58 PM Task #5608 (Closed): Improve OrientDB ansible script
Andrea Dell'Amico wrote:
> Luca Frosini wrote:
> >
> > Can I launch it with the following command?
> > ./run.sh ... Luca Frosini
01:02 PM Task #5608: Improve OrientDB ansible script
Luca Frosini wrote:
>
> Can I launch it with the following command?
> ./run.sh orientdb.yml -i inventory/hosts.de... Andrea Dell'Amico
12:59 PM Task #5608: Improve OrientDB ansible script
Andrea Dell'Amico wrote:
> Luca Frosini wrote:
> > Orient DB ansible script should be enhanced with the following f... Luca Frosini
12:56 PM Task #5608: Improve OrientDB ansible script
I also parametrized the atuomatic backup configuration file. See rev 7fafb2c2e3041c8c5803bf3b9da42864c1e16470 Luca Frosini
12:36 PM Task #5608: Improve OrientDB ansible script
Luca Frosini wrote:
> Orient DB ansible script should be enhanced with the following features:
>
> * possibility ... Andrea Dell'Amico
12:34 PM Task #5608 (In Progress): Improve OrientDB ansible script
I already made part of the work to implement automatic backup. See commit bfaf045d437b40d143552820f93fcea7b6dcb1ff Luca Frosini
11:59 AM Task #5608 (Closed): Improve OrientDB ansible script
Orient DB ansible script should be enhanced with the following features:
* possibility to upgrade hook only (need ... Luca Frosini
02:18 PM VRE #5614 (Released): GEMex
VRE per il progetto GEMex:
GEMex Cooperation in Geothermal energy research Europe-Mexico for development of Enhance... Eugenio Trumpy
02:06 PM Task #5292: Destroy VM dev.d4science.org (not destroyed anymore)
On this host there is the postgresql DB gcube-releases, that is still used by portal.d4science.org Tommaso Piccioli
01:22 PM Task #5610: Assign geonetwork.d4science.org alias
The CNAME has been moved.
 Andrea Dell'Amico
01:19 PM Task #5610 (In Progress): Assign geonetwork.d4science.org alias
The old production VM is geoserver-last.d4science-ii.research-infrastructures.eu, btw
 Andrea Dell'Amico
01:04 PM Task #5610 (Closed): Assign geonetwork.d4science.org alias
Please assign alias "geonetwork.d4science.org" to host : geonetwork1-p-d4s.d4science.org (current main GeoNetwork in... Fabio Sinibaldi
11:49 AM Task #5508 (Closed): new Geonetwork instance
The node works properly. However, geonetwork webapp is using geoserver-db.d4science.org, because it's not compatible ... Fabio Sinibaldi
09:41 AM Upgrade #4104 (Completed): upgrade ENG infra at gCube 3.11.0
Activity completed. Update to 3.11 was actually deployed by the end of July. Daniele Pavia
09:40 AM Upgrade #4104 (In Progress): upgrade ENG infra at gCube 3.11.0
Daniele Pavia
09:39 AM Upgrade #4104 (Planned): upgrade ENG infra at gCube 3.11.0
Daniele Pavia

Oct 31, 2016

06:33 PM Task #2220 (Closed): Configure the provisioned smartgears nodes with a web proxy in front of them
nginx with https is now the default when using the ansible playbooks.
 Andrea Dell'Amico
06:31 PM Task #205 (Feedback): Automate the installation and configuration of the geonetwork servers
We only need the completion of #5508. Andrea Dell'Amico
06:27 PM Task #5546 (Closed): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
The new profile is available to all the existing users and it will be installed to the new ones.
 Andrea Dell'Amico
06:26 PM Task #3070 (Closed): Provide a way of starting and stopping a list of VMs by some users
Services have evolved in a different way. Not needed anymore.
 Andrea Dell'Amico
06:08 PM Task #5595 (Feedback): Provide a new VM for a smart-executor instance
The VM is up and you have root access to it.
I've updated the ansible inventory and created the group:
~~~
[sm... Andrea Dell'Amico
05:26 PM Task #5595 (In Progress): Provide a new VM for a smart-executor instance
hostname and IP will be: social-indexer.d4science.org 146.48.122.33
 Andrea Dell'Amico
06:07 PM Task #5596 (Feedback): Provide a new VM for a smart-executor instance
The VM is up and you have root access to it.
I've updated the ansible inventory and created the group:
~~~
[sm... Andrea Dell'Amico
05:25 PM Task #5596 (In Progress): Provide a new VM for a smart-executor instance
hostname and IP will be: accounting-aggregator.d4science.org 146.48.122.24
 Andrea Dell'Amico
05:57 PM Task #5601 (Closed): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
Kostas Kakaletris wrote:
> You can add checks for the new elastic search cluster (index nodes). You had tests for th... Andrea Dell'Amico
05:04 PM Task #5601: Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
You can add checks for the new elastic search cluster (index nodes). You had tests for the previous elastic search so... Kostas Kakaletris
04:35 PM Task #5601: Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
Done.
We are testing the smartgears wsdl as the availability check. If you have more specific URLs for the various ... Andrea Dell'Amico
04:26 PM Task #5601 (In Progress): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
Andrea Dell'Amico
12:24 PM Task #5601 (Closed): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
The following changes took place in NKUA's infrastructure, after gcube 4.1.0 upgrade, and related changes should be d... Kostas Kakaletris
04:53 PM Task #5590: DataMiner as Generic Worker
One more question: can I have the list of scopes where those servers will be available?
 Andrea Dell'Amico

Oct 29, 2016

11:23 AM Task #5353: Database + endpoint needed
- 88.197.53.20 is the ip of the VM that is hosting the pre-production gcube service
- 88.197.53.37 is the ip of the ... Kostas Kakaletris

Oct 28, 2016

05:49 PM Task #5353: Database + endpoint needed
This one should be the actual java service, managed by @k.kakaletris@cite.gr Denis Pyriochos
03:42 PM Task #5353: Database + endpoint needed
I've also seen accesses coming from 88.197.53.20. I added both the IPs to the postgresql ACLs.
 Andrea Dell'Amico
03:38 PM Task #5353: Database + endpoint needed
Yes. I just checked and it has access to all three databases: SimulFishGrowth, SimulFishGrowth_pre, SimulFishGrowth_prod Denis Pyriochos
10:51 AM Task #5353: Database + endpoint needed
Denis Pyriochos wrote:
> this is the only static ip accessing the database.
Is this valid for the dev and prepro... Andrea Dell'Amico
10:25 AM Task #5353 (Closed): Database + endpoint needed
@andrea.dellamico@isti.cnr.it this is the only static ip accessing the database. Denis Pyriochos
10:16 AM Task #5353: Database + endpoint needed
The service endpoint is in place Roberto Cirillo
09:27 AM Task #5353 (Feedback): Database + endpoint needed
Denis Pyriochos wrote:
> Also, I get the error
>
> 10:11:43 PM: Error: FATAL: no pg_hba.conf entry for host ... Andrea Dell'Amico
05:43 PM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Hi, I checked here and there but there seems not to be any way to set a system property from within the web.xml, the ... Marco Cornolti
04:05 PM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Andrea Dell'Amico wrote:
> Marco Cornolti wrote:
> > Hi! I fixed this yesterday and replied via e-mail but it was n... Andrea Dell'Amico
10:39 AM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Marco Cornolti wrote:
> Hi! I fixed this yesterday and replied via e-mail but it was not added here, dunno why. Re-s... Andrea Dell'Amico
10:25 AM Incident #5589 (Closed): The tagme webapp doesn't work anymore after the smartgears ugprade
Marco Cornolti
10:24 AM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Hi! I fixed this yesterday and replied via e-mail but it was not added here, dunno why. Re-sending.
It seems that ... Marco Cornolti
09:40 AM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
This problem was fixed (by @cornolti@di.unipi.it ?) but there's a new one impacting the service.
 Andrea Dell'Amico
05:11 PM Task #5590: DataMiner as Generic Worker
The expanded list of generic workers that will be terminated:
~~~
node3.d4science.org
node11.d4science.org
node... Andrea Dell'Amico
02:17 PM Task #5590: DataMiner as Generic Worker
Yes to all. Gianpaolo Coro
02:15 PM Task #5590: DataMiner as Generic Worker
So, 3GB of ram, 2 CPUs, 12 GBs of disk (but I'll make them bigger, the R packages and dataminer occupy a lot of space... Andrea Dell'Amico
04:52 PM Task #5139 (Closed): New VM for hosting a new istance of tabulardata service
Tabular service has been deployed on FARM vo and WECAFC-FIRMS vre Roberto Cirillo
03:38 PM Task #5139 (Feedback): New VM for hosting a new istance of tabulardata service
Provisioned with nginx and https (optional).
The DB creation was also automated.
 Andrea Dell'Amico
01:06 PM Task #5139: New VM for hosting a new istance of tabulardata service
I'm going to upgrade the container to the last smartgears version Roberto Cirillo
12:53 PM Task #5139: New VM for hosting a new istance of tabulardata service
Please update this activity since it is opened one month ago and it was accepted as urgent. Pasquale Pagano
04:45 PM Incident #5591 (Closed): The new authorization service stops responding
We have increased the possible connection from auhtorization to DB and modified the authorization service to avoid bl... Lucio Lelii
10:30 AM Incident #5591: The new authorization service stops responding
Hi, I have updated (solved) Incident #5589 but I do not believe the two issues are related, except from the fact that... Marco Cornolti
09:42 AM Incident #5591: The new authorization service stops responding
There is no out of memory or other symptom of resource exhaustion on the servers.
 Andrea Dell'Amico
09:38 AM Incident #5591 (Closed): The new authorization service stops responding
It seems that the authorization service is not able to handle the amount of requests that come from the tagme service... Andrea Dell'Amico
04:43 PM Task #5596 (Closed): Provide a new VM for a smart-executor instance
The new VM should have the standard resources used for smart-executor instances and a more specific hostname.
The sm... Roberto Cirillo
04:23 PM Task #5594: nagios checks for the new authorization service
you can use:
http://authorization.d4science.org/authorization-service/gcube/service/token/{guest-token} Lucio Lelii
03:58 PM Task #5594: nagios checks for the new authorization service
@lucio.lelii@isti.cnr.it can you provide an URL to check if the application is working correctly?
 Andrea Dell'Amico
03:56 PM Task #5594 (Closed): nagios checks for the new authorization service
Need to check postgresql and the authorization webapp Andrea Dell'Amico
04:21 PM Task #5595 (Closed): Provide a new VM for a smart-executor instance
The new VM should have the standard resources used for smart-executor instances and a more specific hostname.
The sm... Roberto Cirillo
03:54 PM Task #5592 (Closed): Remove old nagios check
Andrea Dell'Amico
01:30 PM Task #5592 (Feedback): Remove old nagios check
Done. Removed from the DNS, too.
The image disks are still on dlib21x and dlib23x. Can be removed?
 Andrea Dell'Amico
01:17 PM Task #5592 (In Progress): Remove old nagios check
Andrea Dell'Amico
12:34 PM Task #5592: Remove old nagios check
The containers have been stopped and the VMs above can be dismissed. Roberto Cirillo
12:33 PM Task #5592 (Closed): Remove old nagios check
The following nodes belonging to the old preprod (Ecosystem) should be removed from nagios:
~~~
node20.p.d4scienc... Roberto Cirillo
03:08 PM Task #4414: New server for the Broker Service
The following services should be accessible only from the ISTI network:
* Tomcat (port 8080)
* ElasticSearch (920... Michele Artini
12:02 PM Task #1279 (Closed): Use HTTPS for CouchDB dev instances
Luca Frosini
12:02 PM Task #1278 (Closed): Use HTTPS for CouchDB production instances
Luca Frosini
12:02 PM Task #1265 (Closed): Limit HTTP Method on accounting-d-d4s.d4science.org
Luca Frosini
12:02 PM Task #362 (Closed): Limit HTTP Method on accounting-d4s.d4science.org
Luca Frosini
11:51 AM Task #5584 (Closed): Please upgrade resource-registry
Thanks for yr support Luca Frosini
11:50 AM Task #323 (Closed): Install couchdb 2.0 with fauxton
Couchdb is going to be abandoned. So that this ticket can be closed. Luca Frosini
10:38 AM Task #5397 (Closed): Endpoint access - SimulFishGrowthData
Denis Pyriochos
10:38 AM Task #5398 (Closed): Endpoint access - SimulFishGrowthData
Denis Pyriochos
10:37 AM Task #5396 (Closed): Endpoint access - SimulFishGrowthData
Denis Pyriochos
10:33 AM Task #5384 (Closed): Endpoint access - SimulFishGrowth
production done at #5353 Denis Pyriochos
10:33 AM Task #5386 (Closed): Endpoint access - SimulFishGrowth
production done at #5353 Denis Pyriochos
10:32 AM Task #5385 (Closed): Endpoint access - SimulFishGrowth
production done at #5353 Denis Pyriochos
10:07 AM Task #5451 (Closed): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
Andrea Dell'Amico
09:58 AM Task #4371 (Closed): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Script and cron jobs have been installed on all the dataminer servers.
 Andrea Dell'Amico
09:45 AM Task #2175 (Closed): Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org
Completed a long time ago. Andrea Dell'Amico

Oct 27, 2016

09:14 PM Task #5353: Database + endpoint needed
Also, I get the error
10:11:43 PM: Error: FATAL: no pg_hba.conf entry for host "193.92.78.53", user "sfguser"... Denis Pyriochos
09:10 PM Task #5353 (In Progress): Database + endpoint needed
we also need an database endpoint named **SimulFishGrowth**, pointing to this database and accessible from the scopes... Denis Pyriochos
08:04 PM Task #5353 (Feedback): Database + endpoint needed
I've just created the db named `SimulFishGrowth_prod`. You can access it with the same user and password of the other... Andrea Dell'Amico
07:24 PM Task #5353: Database + endpoint needed
We need the same for Production as well. Denis Pyriochos
08:28 PM Task #205: Automate the installation and configuration of the geonetwork servers
The basic services are covered by the provisioning. The last missing part is the geonetwork app.
 Andrea Dell'Amico
06:48 PM Task #5590: DataMiner as Generic Worker
yes! Gianpaolo Coro
06:42 PM Task #5590: DataMiner as Generic Worker
Can you confirm that these are the VMs that we can destroy?
~~~
node3.d4science.org
node[11:13].d4science.org
n... Andrea Dell'Amico
06:37 PM Task #5590: DataMiner as Generic Worker
Gianpaolo Coro wrote:
>
> ~~~
> dataminer.genericworkers.d4science.org
> ~~~
dataminer-genericworkers.d4sci... Andrea Dell'Amico
06:32 PM Task #5590 (Closed): DataMiner as Generic Worker
DataMiner should substitute the Generic Workers already from r4.1.0. The old GW should be shutdown. Three DataMiner a... Gianpaolo Coro
06:30 PM Incident #5589 (Closed): The tagme webapp doesn't work anymore after the smartgears ugprade
Tagme is not working after the upgrade to the new smartegears 2. On the smartgears front all is working correctly, bu... Andrea Dell'Amico
06:29 PM Task #5588 (Closed): VM smartforms.d4science.org can be dismissed
Massimiliano Assante
06:25 PM Task #5588 (Feedback): VM smartforms.d4science.org can be dismissed
Andrea Dell'Amico
06:24 PM Task #5588 (In Progress): VM smartforms.d4science.org can be dismissed
Powered off. Disks and configuration are still available on dlib27x.dom0.research-infrastructures.eu
 Andrea Dell'Amico
05:43 PM Task #5588 (Closed): VM smartforms.d4science.org can be dismissed
along with all its content as the project between Extra and FAO was canceled. Massimiliano Assante
06:12 PM Task #4842 (Closed): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
Andrea Dell'Amico
06:11 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
I cleaned up all the local users. Now all the users authenticate against ldap.
 Andrea Dell'Amico
04:58 PM Task #1112 (Closed): Cotrix Portlet undeployment
not sure if the cotrix.d4science.org was destroyed, but if it wasn't already please do. Massimiliano Assante
04:50 PM Incident #5587 (Closed): Broken apt package repositories on node65.d4science.org
Automatic package deployment failed on that node because there were broken source repositories defined:
~~~
W: Fa... Andrea Dell'Amico
04:35 PM Task #5586 (Closed): nagios check on node76.p.d4science.research-infrastructures.eu (JackRabbit): from tomcat to smartgears
Done.
 Andrea Dell'Amico
12:11 PM Task #5586 (Closed): nagios check on node76.p.d4science.research-infrastructures.eu (JackRabbit): from tomcat to smartgears
In release 4.1, the jackRabbit's webapp has become a smartgears service. For this reason it's need to change the chec... Roberto Cirillo
04:35 PM Task #5568 (Closed): Please Update orientdb version to 2.2.12
thanks a lot Luca Frosini
04:08 PM Task #5568 (Feedback): Please Update orientdb version to 2.2.12

OK, I adjusted the task that removes the old hooks.
 Andrea Dell'Amico
01:55 PM Task #5568: Please Update orientdb version to 2.2.12
This playbook is launched to upgrade orient or the hook. In both cases orientdb must be restarted to have effect.
Mo... Luca Frosini
12:49 PM Task #5568: Please Update orientdb version to 2.2.12
Luca Frosini wrote:
> I thought about this proposal but it is difficult to keep aligned.
> Can we remove all files ... Andrea Dell'Amico
10:12 AM Task #5568: Please Update orientdb version to 2.2.12
I thought about this proposal but it is difficult to keep aligned.
Can we remove all files matching resource-registr... Luca Frosini
04:17 PM Upgrade #5082 (Completed): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
12:31 PM Upgrade #5082 (In Progress): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
12:30 PM Upgrade #5082 (Planned): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
04:16 PM Upgrade #5083 (Completed): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
03:40 PM Task #5551 (In Progress): Produce Release Notes for gCube 4.1.0
thank you @laskarisn@di.uoa.gr I'm assigning the ticket to @gabriele.giammatteo@eng.it that will publish the notes Massimiliano Assante
10:43 AM Task #5551: Produce Release Notes for gCube 4.1.0
Please, find the news of 4.1.0 release on the following link:
goo.gl/gn8HGy
 Nikolas Laskaris
12:56 PM Task #5584 (Feedback): Please upgrade resource-registry
When upgrading you need to pass an additional variable to the play, so that the old webapp will be removed:
~~~
-... Andrea Dell'Amico
10:42 AM Task #5584 (Closed): Please upgrade resource-registry
The new version is:
*resource-registry-1.2.0-20161027.082258-5.war*
I already upgraded the version on ansible scr... Luca Frosini
12:34 PM Task #5531 (Closed): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
Done. Andrea Dell'Amico
11:06 AM Task #5531: mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
this morning infra-gateway1 is down, could you perform the operation within midday today? Massimiliano Assante
12:21 PM Upgrade #5077 (Planned): FARM VO upgrade to gCube 4.1
Roberto Cirillo
11:57 AM Task #5508 (Feedback): new Geonetwork instance
Fabio Sinibaldi wrote:
> The DBMS needs to be postgis enabled.
They are installed already. postgresql 9.5, postgi... Andrea Dell'Amico
11:01 AM Task #5508: new Geonetwork instance
The DBMS needs to be postgis enabled.
About scopes, the production root /d4science.research-infrastructures.eu is en... Fabio Sinibaldi
09:33 AM Upgrade #5079 (Completed): /gcube/preprod upgrade to gCube 4.1.0
Roberto Cirillo
09:32 AM Task #5566 (Closed): Create new ServiceEndpoint for storage manager library
Roberto Cirillo
09:32 AM Task #5566 (In Progress): Create new ServiceEndpoint for storage manager library
Roberto Cirillo

Oct 26, 2016

08:08 PM Task #5508: new Geonetwork instance
The node is up. The postgres credentials are the same of the *new* dev DB.
The missing parts are a working smartge... Andrea Dell'Amico
07:32 PM Task #5508: new Geonetwork instance
I'm going to install a 9.5 postgresql instance on the same host. If that postgresql version is OK, I'll create a sepa... Andrea Dell'Amico
07:00 PM Task #5508: new Geonetwork instance
hostname and IP are going to be geonetwork1-p-d4s.d4science.org 146.48.122.250
 Andrea Dell'Amico
06:51 PM Task #5508 (In Progress): new Geonetwork instance
Andrea Dell'Amico
06:50 PM Task #5568: Please Update orientdb version to 2.2.12
Luca Frosini wrote:
> The last thing to be fixed in ansible script is that is a new version of hooks jas is availabl... Andrea Dell'Amico
06:19 PM Task #5568: Please Update orientdb version to 2.2.12
The last thing to be fixed in ansible script is that is a new version of hooks jas is available the new one is instal... Luca Frosini
06:17 PM Task #5568: Please Update orientdb version to 2.2.12
The tags is created but at startime the xml is rewritten so that is not at the end as expected and I didn't notice it.
 Luca Frosini
05:11 PM Task #5568: Please Update orientdb version to 2.2.12
Seem that everything is configured in the proper way. Unfortunately hooks tag is missed in ~/orientdb-community/confi... Luca Frosini
04:27 PM Task #5568: Please Update orientdb version to 2.2.12
@andrea.dellamico@isti.cnr.it fixed the ansible script. I run it. I'll check if everything is ok now. Luca Frosini
03:22 PM Task #5568: Please Update orientdb version to 2.2.12
I just notice that root own orientdb directory (i.e. orientdb-community-2.2.12).
If there is no reason I ignore, I t... Luca Frosini
03:18 PM Task #5568: Please Update orientdb version to 2.2.12
I fixed /etc/init.d/orientdb script on orientdb01-d-d4s like this:
~~~
cat /etc/init.d/orientdb
#!/bin/bash
# ... Luca Frosini
02:33 PM Task #5568: Please Update orientdb version to 2.2.12
I experiencing some issues on orientdb:
* Only orientdb02-d-d4s was started.
* trying starting the service manual... Luca Frosini
12:18 PM Task #5568 (In Progress): Please Update orientdb version to 2.2.12
thanks to @andrea.dellamico@isti.cnr.it indication I run the upgrade Luca Frosini
11:46 AM Task #5568 (Closed): Please Update orientdb version to 2.2.12
I already updated the version on ansible script.
 Luca Frosini
06:35 PM Task #5580 (Closed): Update rewrite rules for data.d4science to allow access to workspace-explorer-app
It's only a matter of adding a new context to the ansible variables.
~~~
- - { http_enabled: True, http_port: '... Andrea Dell'Amico
06:19 PM Task #5580 (Closed): Update rewrite rules for data.d4science to allow access to workspace-explorer-app
A new web-app called "workspace-explorer-app" must be released on data.d4science.org
The rewrite rules should be upd... Francesco Mangiacrapa
04:50 PM Task #5551: Produce Release Notes for gCube 4.1.0
@laskarisn@di.uoa.gr the release notes are due tomorrow but i see no progresses on this activity, please could you up... Massimiliano Assante
02:56 PM Upgrade #5079: /gcube/preprod upgrade to gCube 4.1.0
The build finished successfully on etics but we are encountering a problem at preproduction installation and we are t... Kostas Kakaletris
10:53 AM Upgrade #5079: /gcube/preprod upgrade to gCube 4.1.0
Any news on dewn07.madgik.di.uoa.gr? Roberto Cirillo
11:43 AM Task #4984 (Closed): Create new VM to host new Resource Registry
Luca Frosini
11:42 AM Task #3475 (In Progress): Add 2 OrientDB instances
Luca Frosini
11:42 AM Task #3475 (Closed): Add 2 OrientDB instances
Luca Frosini
09:10 AM Task #5566 (Closed): Create new ServiceEndpoint for storage manager library
Roberto Cirillo
09:08 AM Task #5565 (Closed): Create a cronjob for restarting thredds.d4science.org
A cronjob for restarting the gCube container hosted on thredds.d4science.org is needed.
The cronjob should restart... Roberto Cirillo

Oct 25, 2016

05:58 PM Task #5501 (Feedback): Move data from development to production GeoNetwork
Styles copied and associated to respective layers.
"W_mpa:ecoregions" renamed to "W_mpa:ecoregion".
Please check ev... Fabio Sinibaldi
11:41 AM Task #5501: Move data from development to production GeoNetwork
Hi Fabio, in addition to the style publication (for geomorphic feature layers), could you please rename the layer "W_... Emmanuel Blondel
03:43 PM Task #5338 (Closed): Allow XHR requests on D4science Geoserver WFS
Andrea Dell'Amico
02:34 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I confirm it works as well on prod. Many thanks for your support @andrea.dellamico@isti.cnr.it , much appreciated! Emmanuel Blondel
01:11 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Emmanuel Blondel wrote:
> Hi Andrea, thanks for this, indeed now we don't get any cross-origin exception on the clie... Andrea Dell'Amico
10:58 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
Thanks @andrea.dellamico@isti.cnr.it for your support, I'm going to change this ticket as Task Ticket Francesco Mangiacrapa
10:22 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
Hi Andrea, thanks for this, indeed now we don't get any cross-origin exception on the client (the good news!). But in... Emmanuel Blondel
09:59 AM Task #5338: Allow XHR requests on D4science Geoserver WFS

I reworked the CORS configuration because it seems that geoserver gets confused (or is the caller to get confused?)... Andrea Dell'Amico
03:18 PM Task #5256 (Closed): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Alessandro Pieve
03:05 PM Task #5422: develop a proxy service to be used for access http external pages from the portal domain
I'm moving this ticket as related to #5338 instead of subtask. Francesco Mangiacrapa
03:04 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Yes it's a file system. But Apache www dir also, they are static resources, wondering if you can map both. That is: t... Emmanuel Blondel
02:44 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Sorry, I don't understand. The Workspace is an online file system, Apache is a server and the Web app a sort of servi... Gianpaolo Coro
02:18 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
I think it's a different thing (but thanks for the tip). My question was: once we published some web-app to an Apache... Emmanuel Blondel
01:14 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Hi Emmanuel, the WebApp is using an old DataTransfer technology we inherited from CERN. Hopefully from the next relea... Gianpaolo Coro
12:56 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Hi, some user experience (IMHO related to the above request, so i put it here.. but please let me know if you prefer ... Emmanuel Blondel
11:59 AM Support #5552 (Closed): BlueBRIDGE VRE: recent documents error
The issue has been fixed and the Recent Documents portlet is now working. Valentina Marioli
11:57 AM Support #5552 (In Progress): BlueBRIDGE VRE: recent documents error
The problem is due to a bug in the portal session. Valentina Marioli

Oct 24, 2016

08:08 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I couldn't test this time, geoserver-dev seems down.
This test app is a way to check http://access.d4science.org/web... Emmanuel Blondel
07:43 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Can you check now?
Or can you show me a way to test by myself?
 Andrea Dell'Amico
07:35 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
It's not working with dev Geoserver on http (invoking on http://access.d4science.org) Emmanuel Blondel
07:22 PM Task #5338 (Feedback): Allow XHR requests on D4science Geoserver WFS
Please @emmanuel.blondel@fao.org can you check it again?
Thanks Pasquale Pagano
11:15 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
My fault, I assumed that the request were made over https. Now it should work over http too.
 Andrea Dell'Amico
10:48 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
Hi Andrea, thanks for pushing on this. I've tried it with dev geoserver under http://access.d4science.org, but it did... Emmanuel Blondel
07:47 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Gianpaolo Coro wrote:
> Could you please install it on dataminer1-devnext?
Done.
> What happens if one of the ... Andrea Dell'Amico
07:28 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Could you please install it on dataminer1-devnext?
What happens if one of the packages has typo? The complete instal... Gianpaolo Coro
03:41 PM Task #4371 (Feedback): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
The lists are now got from subversion. script and the cron jobs work as proposed in #note-2:
* One cron job runs a... Andrea Dell'Amico
07:20 PM Task #5448: Dataminer - Need to align R configuration with RStudio simulation environment
Changing the nature of this issue since it generated a number of actions that are partially completed. Please provide... Pasquale Pagano
07:11 PM Support #5552: BlueBRIDGE VRE: recent documents error
Please provide an answer asap Pasquale Pagano
11:34 AM Support #5552 (Closed): BlueBRIDGE VRE: recent documents error
Recent Documents portlet returns an error
~~~
Sorry, it seems something is wrong with this folder.
~~~
This i... Massimiliano Assante
02:44 PM Incident #5556 (Closed): RStudio is down on RprototypingLab
The sessions files had the wrong owner. Now has been fixed.
 Andrea Dell'Amico
01:04 PM Incident #5556 (Closed): RStudio is down on RprototypingLab
Internal Server Error (code 500)
http://dataminer1-proto.d4science.org/r-connector/gcube/service/connect?gcube-token... Emmanuel Blondel
11:29 AM Task #5551 (Closed): Produce Release Notes for gCube 4.1.0
Please produce Release Notes for gCube 4.1.0 Massimiliano Assante
10:23 AM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
due to changes in a related task Gianpaolo Coro
10:13 AM Task #4372 (Closed): open some workspace repositories (directories) containing R Scripts directly from Rstudio
I guess this request can be managed in #5459 Gianpaolo Coro

Oct 21, 2016

07:29 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
@emmanuel.blondel@fao.org I've just enabled both CORS and https on the dev geoserver. Are you able to test if it solv... Andrea Dell'Amico
05:39 PM Task #5338 (In Progress): Allow XHR requests on D4science Geoserver WFS
Andrea Dell'Amico
05:14 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Please @francesco.mangiacrapa@isti.cnr.it, @andrea.dellamico@isti.cnr.it, and @gianpaolo.coro@isti.cnr.it look at thi... Pasquale Pagano
12:59 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Please note that it's not really about "external tools", it's about to query a **D4Science** Geoserver WFS, which is ... Emmanuel Blondel
12:53 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Until now we were relying directly on VLIZ Geoserver WFS (temporarily) to let GRID-ARENDAL test their web-app (using ... Emmanuel Blondel
06:11 PM Task #5546 (In Progress): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions

On rstudio-dev I've just installed a new version of the r-connector script that:
* do not allow the creation of ... Andrea Dell'Amico
02:34 PM Task #5546 (Closed): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
The public repository for the file is here: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-... Andrea Dell'Amico
05:39 PM Task #5531 (In Progress): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
infra-gateway1 must be restarted to change the /tmp file system, please provide a date. Tommaso Piccioli
05:24 PM Task #5457 (Closed): Data transfer should support update
Yes, the policies you provide satisfy the request. Pasquale Pagano
04:18 PM Task #5457: Data transfer should support update
Current implementation supports these policies in case the file to transfer is already found in the specified path:
... Fabio Sinibaldi
02:51 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Here is the SVN folder:
https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/RConfiguration... Gianpaolo Coro
02:41 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
I'm attaching the files lists. @gianpaolo.coro@isti.cnr.it would you setup a subversion repository for them?
 Andrea Dell'Amico
02:32 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
As I wrote by email, I don't know why the r-connector script that adds users creates local users if they're not avail... Andrea Dell'Amico
09:02 AM Task #5543: Questions about CKAN and CSW support (with possible application to FAO)
Yes, please keep us informed on the issues you will find.
I am changing the issue type since this is a task for Fra... Pasquale Pagano

Oct 20, 2016

08:10 PM Task #5543: Questions about CKAN and CSW support (with possible application to FAO)
Thanks Lino for these clarifications. To be honest, I don't know anything about CKAN, and then i was not aware of the... Emmanuel Blondel
08:01 PM Task #5543: Questions about CKAN and CSW support (with possible application to FAO)
Hi Emmanuel,
the Product Catalogue was presented as a tool to collect data from other domain specific catalogues. GN... Pasquale Pagano
07:45 PM Task #5543 (Closed): Questions about CKAN and CSW support (with possible application to FAO)
I have some questions about CKAN and its support of OGC Catalogue Service for the Web (CSW):
* would it be possibl... Emmanuel Blondel
08:04 PM Task #4842 (Feedback): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
rstudio.d4science.org is now authenticating against ldap.d4science.org. While rstudio-dev.d4science.org is authentica... Andrea Dell'Amico
01:04 PM Upgrade #5078: gCubeApps VO upgrade to gCube 4.1

**Hosting Nodes**


*GHN to upgrade*
* gcube01.vliz.be:8080
* **(CNR) DONE** node64.p.d4science.researc... Roberto Cirillo

Oct 19, 2016

02:34 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Emmanuel Blondel wrote:
> Not yet. Generally speaking i would prefer to check this through the feature requested in ... Andrea Dell'Amico
02:28 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Not yet. Generally speaking i would prefer to check this through the feature requested in #5461. But if you wish, i c... Emmanuel Blondel

Oct 18, 2016

03:13 PM Task #5534 (Closed): Ansible: add new scope to the CkanConnector playbook
Andrea Dell'Amico
03:13 PM Task #5534 (In Progress): Ansible: add new scope to the CkanConnector playbook
Done.
The playbook configuration has been changed to be smartgears 2.0 compliant.
 Andrea Dell'Amico
10:01 AM Task #5534 (Closed): Ansible: add new scope to the CkanConnector playbook
A new scope should be added to the ckan-connector playbook for the service hosted on SobigData VO:
~~~
ckan-sobig... Roberto Cirillo
02:48 PM Task #5290: Align DataMiner Locale to the RStudio Locale
@emmanuel.blondel@fao.org did you have the chance to test this? Andrea Dell'Amico
02:47 PM Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
We are going towards a continuous packages synchronization, see #4371. Andrea Dell'Amico
02:44 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
rstudio-dev was also migrated. The rstudio ldap configuration was changed, at the next reboot it will be effective.
 Andrea Dell'Amico
02:42 PM Task #4371 (In Progress): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
The script and the cron jobs are ready.
We now only need a repository where to store the three lists.
 Andrea Dell'Amico
09:31 AM Task #5533 (Closed): Prometheus and Grafana investigation
Prometheus and Grafana investigation for accounting Alessandro Pieve

Oct 17, 2016

05:55 PM Task #5501: Move data from development to production GeoNetwork
Thanks Fabio, let me know when you can complete the style publication.
For what concerns metadata, it's not the pr... Emmanuel Blondel
02:16 PM Task #5497: Move some infrastructure services to the ganeti cluster
gw1.d4science.org is running. It will take the place of gw.d4science.org.
 Andrea Dell'Amico
11:31 AM Task #5531 (Closed): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
with the same size of /tmp of infra-gateway.d4science.org Massimiliano Assante

Oct 14, 2016

10:25 PM Support #5528 (Closed): Add scope to database endpoint
Denis Pyriochos
07:12 PM Support #5528 (In Progress): Add scope to database endpoint
Hey @roberto.cirillo@isti.cnr.it you added /gcube/devNext and not /gcube/devNext/NextNext :) My query returns an empt... Denis Pyriochos
02:56 PM Support #5528 (Closed): Add scope to database endpoint
done Roberto Cirillo
02:53 PM Support #5528 (In Progress): Add scope to database endpoint
Roberto Cirillo
02:28 PM Support #5528 (Closed): Add scope to database endpoint
The endpoint created by #3894 needs access to /gcube/devNext/NextNext, as required by https://support.d4science.org/i... Denis Pyriochos
06:09 PM Upgrade #5529: D4Science Root VO upgrade to gCube 4.1.0
*WHN to dismiss*
* **(CNR) DONE** auth-pre-d4s.d4science.org (authorization service 1.0)
**Configuration**
... Roberto Cirillo
05:57 PM Upgrade #5529 (Completed): D4Science Root VO upgrade to gCube 4.1.0
Roberto Cirillo
05:53 PM Upgrade #5077: FARM VO upgrade to gCube 4.1
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** node24.p.d4science.research-infrastructures.eu:8080
* **(C... Roberto Cirillo
05:52 PM Upgrade #5080: SoBigData VO upgrade to gCube 4.1
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sbd.d4science.org:8080
* **(CNR) DONE** collec... Roberto Cirillo
05:49 PM Upgrade #5081: SmartArea VO upgrade to gCube 4.1
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sa-d4s.smart-applications.area.pi.cnr.it:8080
* ... Roberto Cirillo
11:44 AM Task #5526 (Closed): Please backup Server Couchbase on Dev and Prod
Please backup Server Couchbase on Dev and Prod
Dev:
http://couchbase01-d-d4s.d4science.org:8091/
Prod:
http://c... Alessandro Pieve
11:39 AM Task #2174: Dataminer and Statistical Manager packages
install_github("flr/FLCore")
install_github("flr/FLash")
install_github("flr/FLAssess")
install_github("flr/gg... Gianpaolo Coro

Oct 13, 2016

07:42 PM Task #5497: Move some infrastructure services to the ganeti cluster
ns-cache1 migration completed.
 Andrea Dell'Amico
05:35 PM Task #5497: Move some infrastructure services to the ganeti cluster
ns-cache2 has been migrated. Now it's ns-cache1's turn.
 Andrea Dell'Amico
07:05 PM Task #5523 (Rejected): investigate on the BTRT memory leak problem
Gabriele Giammatteo
07:03 PM Incident #5479 (Closed): Etics build fails after few seconds
the problem was caused by a process (tomcat) on the vm that was consuming too much memory (probably a memory leak). R... Gabriele Giammatteo
06:53 PM Task #5501 (In Progress): Move data from development to production GeoNetwork
Data successfully copied to geoserver.d4science.org. We still need to copy styles as well and set the defaults for la... Fabio Sinibaldi

Oct 12, 2016

03:50 PM Task #5508 (Closed): new Geonetwork instance
We need a new instance of Geonetwork and a postgis db to connect it to.
To create a new db in the currently used dbm... Fabio Sinibaldi
12:25 PM Task #5504 (Rejected): Provide the Infrastructure with a (shared) RDBMS node
Duplicate ticket Massimiliano Assante
12:21 PM Task #5504: Provide the Infrastructure with a (shared) RDBMS node
it seems to me a duplicate of #5502. Please verify and close if I am correct. Pasquale Pagano
12:08 PM Task #5504 (Rejected): Provide the Infrastructure with a (shared) RDBMS node
more and more often the external and non applications require support DBs (including our own apps). See I2S, EFG, and... Massimiliano Assante
09:44 AM Task #5501: Move data from development to production GeoNetwork
@leonardo.candela@isti.cnr.it despite the fact that metadata are not mandatory for MPA analysis, it's always nice to ... Emmanuel Blondel
09:01 AM Task #5501: Move data from development to production GeoNetwork
@emmanuel.blondel@fao.org a couple of clarifications from my side:
* It should not be allowed to have datasets in ... Leonardo Candela
08:53 AM Support #5489: next.d4science credentials
Dear Giancarlo and Massimiliano, thank you for your help. Now I can log in and execute the algorithm SIMULFISHKPIS wh... Gerasimos Antzoulatos

Oct 11, 2016

08:36 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Done. Many thanks Emmanuel Blondel
07:52 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I opened a ticket, #5501, and related to this activity. It is about the porting of data from development to productio... Pasquale Pagano
05:58 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
In principle, i have nothing against moving to prod, if it can boost the overall MPA activity and solve its blocking ... Emmanuel Blondel
05:38 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I believe that we should consider to move this work in production since the activity #5214 clearly illustrate that:
... Pasquale Pagano
12:25 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Any update on this?
I remind this is blocking the MPA web-app VRE integration, and i hope that this restriction pr... Emmanuel Blondel
08:35 PM Task #5501: Move data from development to production GeoNetwork
Many thanks Lino for pushing on that, or for your support to move forward on this Use case. Just to clarify then:
... Emmanuel Blondel
07:50 PM Task #5501 (Closed): Move data from development to production GeoNetwork
Move all the data he published in dev GN to production GN. Resources includes 27 feature types/layers in geoserver (a... Pasquale Pagano
06:49 PM Task #5393 (Closed): Deploy service + endpoint
The Access Fish Growth Simulation Data service is deployed on dl20.di.uoa.gr under the following VREs
1) /gcube/pr... Kostas Kakaletris
05:13 PM Task #5393: Deploy service + endpoint
I've added the ServiceEndpoint to the following VREs in preproduction environment:
~~~
/gcube/preprod/preVRE
/gc... Roberto Cirillo
05:03 PM Task #5497 (In Progress): Move some infrastructure services to the ganeti cluster
migration of ns-cache2 is ongoing.
 Andrea Dell'Amico
03:41 PM Task #5497 (Closed): Move some infrastructure services to the ganeti cluster
Candidates are:
ns-cache1
ns-cache2
gw{1,2} (new openvpn servers that will live side by side)
monitoring-proxy,... Andrea Dell'Amico
04:21 PM Support #5489 (Closed): next.d4science credentials
Giancarlo Panichi
04:02 PM Support #5489: next.d4science credentials
Dear Gerasimos, your algorithm SIMULFISHKPIS is deployed in RPrototypingLab:
https://i-marine.d4science.org/group/... Giancarlo Panichi
03:03 PM Support #5489: next.d4science credentials
the test and development of SAI algorithms was moved on Prototype LAB VRE in production, @g.panichi@isti.cnr.it pleas... Massimiliano Assante
02:30 PM Support #5489 (Closed): next.d4science credentials
I used to log in the dev.d4science and now I can not log in to the next.d4science. Please advice asap as I want to te... Gerasimos Antzoulatos
04:07 PM Incident #5490 (Closed): error when running CATCH_BY_GEARS experiment
Giancarlo Panichi
03:31 PM Incident #5490: error when running CATCH_BY_GEARS experiment
Thanks, I have just repeated the experiments and it works properly now. Paul Taconet
03:24 PM Incident #5490: error when running CATCH_BY_GEARS experiment
I have reinstalled the software and I have tested it with default parameters it seems to work fine.
Please can you r... Giancarlo Panichi
02:46 PM Incident #5490 (Closed): error when running CATCH_BY_GEARS experiment
When I run my algorithm CATCH_BY_GEARS on the RprototypingLab (org.gcube.dataanalysis.wps.statisticalmanager.synchser... Paul Taconet
03:45 PM Task #5495 (Closed): Dismiss mongo-test.d4science.org
Done. Tommaso Piccioli
03:26 PM Task #5495 (Closed): Dismiss mongo-test.d4science.org
The mentioned instance was used for development tests. I don't need it any more and there is no data I need.
The mac... Luca Frosini
03:05 PM Task #5105 (Closed): Enable WebSocket support on nginx for infrastructure gateway
Also verified on the rstudio servers. Andrea Dell'Amico

Oct 10, 2016

06:30 PM Task #5393 (In Progress): Deploy service + endpoint
I've created in preproduction environment the new ServiceEndpoint under the scope /gcube/preprod.
You could see it... Roberto Cirillo
06:23 PM Task #5398: Endpoint access - SimulFishGrowthData
This task is for production environment not for preproduction environment. The new VRE will be created in production ... Roberto Cirillo
06:23 PM Task #5397: Endpoint access - SimulFishGrowthData
This task is for production environment not for preproduction environment. The new VRE will be created in production ... Roberto Cirillo
06:21 PM Task #5396: Endpoint access - SimulFishGrowthData
This task is for production environment not for preproduction environment. The new VRE will be created in production ... Roberto Cirillo
11:44 AM Incident #5479 (Closed): Etics build fails after few seconds
A lot of components were failed after few seconds in the last two builds for release 4.1.0:
~~~
http://eticsbuild... Roberto Cirillo

Oct 09, 2016

12:52 PM Task #5476 (Closed): Enable OCSP stapling on the ssl enabled web services
We can do this only on Ubuntu >= 14.04, because apache 2.4 and nginx >= 1.3 are required.
Some links:
https://wik... Andrea Dell'Amico

Oct 08, 2016

01:02 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
The new proposal is the following:
* Three lists are maintained into a subversion repository. One for the debian p... Andrea Dell'Amico
12:52 PM Task #5292 (Closed): Destroy VM dev.d4science.org (not destroyed anymore)
Done.
Moved the VM configuration and removed the host name from the dns.
 Andrea Dell'Amico
12:44 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
The ldap authentication against the new ldap server is working correctly on dataminer1-prototype, see #4865.
Let me... Andrea Dell'Amico
12:43 PM Task #4865 (Closed): Installing data analysis machine to develop prototypes
rstudio server is working, and the ldap authentication against the new ldap server too. Andrea Dell'Amico
12:22 AM Task #5256 (In Progress): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Alessandro Pieve
12:21 AM Task #5256: Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Checked correctly Alessandro Pieve
 

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