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From Apr 18, 2016 to May 17, 2016

May 17, 2016

06:42 PM Incident #4032 (Closed): Issue in associating parent ticket in ENVRI+
#4031 is a Support tracker. Support cannot be associated to Task because of different nature.
You can add it as rela...
Luca Frosini
05:45 PM Incident #4032 (Closed): Issue in associating parent ticket in ENVRI+
Ticket #4031 cannot be associated to #3842 as child task Gianpaolo Coro
05:11 PM Task #4021 (Closed): Deploy Authorisation service on SoBigData VO
Massimiliano Assante
04:13 PM Task #4021 (In Progress): Deploy Authorisation service on SoBigData VO
works on this VO but Authorisation is broken in gCubeApps now :) Massimiliano Assante
04:02 PM Task #4021 (Closed): Deploy Authorisation service on SoBigData VO
Lucio Lelii
03:49 PM Task #4021 (Closed): Deploy Authorisation service on SoBigData VO
Massimiliano Assante
03:51 PM Task #3973 (Closed): Deploy VRE-Modeler service on SoBigData VO
Massimiliano Assante
12:40 PM Task #4017 (Closed): Create SoBigData Virtual Organisation on Services D4science.org Gateway
Roles VO Admin, VRE Manager and Designer added to the VO. The concept of the VO has been translated in RI, see URL: h... Massimiliano Assante
11:48 AM Task #4017 (In Progress): Create SoBigData Virtual Organisation on Services D4science.org Gateway
Massimiliano Assante
11:47 AM Task #4017 (Closed): Create SoBigData Virtual Organisation on Services D4science.org Gateway
Massimiliano Assante
12:26 PM Incident #4018 (Closed): UserManagement Portlet, reject of request email problem
When I reject more than one user, starting from the second time even click yes on the question You want to send an em... Massimiliano Assante

May 16, 2016

05:26 PM Task #3973 (Feedback): Deploy VRE-Modeler service on SoBigData VO
Roberto Cirillo
04:20 PM Task #3973 (In Progress): Deploy VRE-Modeler service on SoBigData VO
Roberto Cirillo

May 13, 2016

09:18 PM Task #3999: create 2 istances of Couchbase
According to my knowledge each instance has the following characteristics:
- 4 GB Ram
- 40 GB Disk
- 2 CPUs
T...
Pasquale Pagano
06:05 PM Task #1112: Cotrix Portlet undeployment
In the meantime deleted the cotrix-dev.d4science.org host. Tommaso Piccioli
03:08 PM Task #1112: Cotrix Portlet undeployment
These are the single click from outside CNR network.
Three times connections are from FAO network (last on 2016-05-0...
Tommaso Piccioli
10:33 AM Task #1112: Cotrix Portlet undeployment
The portlet integrated in the portal does not work, the standalone application (https://cotrix.d4science.org:8443/cot... Massimiliano Assante
10:35 AM Upgrade #3868: D4Science Infrastructure Upgrade to gCube 3.11.0
due to changes in a related task Massimiliano Assante
10:16 AM Task #3894 (Closed): Create service endpoint resource for SimulFishGrowth DB
Massimiliano Assante

May 12, 2016

07:11 PM Task #3999 (Closed): create 2 istances of Couchbase
Link for installation:
http://developer.couchbase.com/documentation/server/4.1/install/install-intro.html
Alessandro Pieve
06:47 PM Task #3894 (In Progress): Create service endpoint resource for SimulFishGrowth DB
Massimiliano Assante
06:46 PM Task #3894 (Closed): Create service endpoint resource for SimulFishGrowth DB
The service endpoint resource was created successfully, please refer to @p.koltsida@di.uoa.gr for information on how ... Massimiliano Assante
06:05 PM Task #3894 (In Progress): Create service endpoint resource for SimulFishGrowth DB
Massimiliano Assante
02:13 PM Task #3997 (In Progress): Couchbase investigation
Alessandro Pieve
02:12 PM Task #3997 (Closed): Couchbase investigation
Investigating Couchbase for accounting analitycs. Alessandro Pieve
01:11 PM Task #3992 (In Progress): Clone of node11.d.d4science.research-infrastructures.eu
We do not want clone a too aged host, we will provide a new host.
I propose to have a new machine to substitute no...
Tommaso Piccioli
11:52 AM Task #3992 (Closed): Clone of node11.d.d4science.research-infrastructures.eu
We would need to clone node11.d.d4science.research-infrastructures.eu as we need to have two different Jackrabbit for... Valentina Marioli
11:23 AM Task #3895: Upgrade the jackrabbit devel environment
Yes, it can be upgraded. Valentina Marioli

May 11, 2016

12:32 PM Task #3475: Add 2 OrientDB instances
Can you also create a txt DNS record as described here:
http://orientdb.com/docs/last/Distributed-Configuration.html...
Luca Frosini

May 10, 2016

10:51 PM Task #3985 (Closed): Subversion access
Allow access to subversion to @denispyr@i2s.gr Denis Pyriochos
06:33 PM Task #3984 (In Progress): Please check Redmine bottleneck and provide more resources if possible/feasible
I am trying to tune resource parameters, I will restart the server this evening. Tommaso Piccioli
05:25 PM Task #3984 (Closed): Please check Redmine bottleneck and provide more resources if possible/feasible
Luca Frosini
06:33 PM Support #3913 (Rejected): New developer
Can you please open a ticket (Task type) to Infrascience System Engineers? Luca Frosini
05:40 PM Support #3913 (In Progress): New developer
I am reopening the ticket as it asks for subversion access too. Or should he open a new ticket on this? Kostas Hirikakis
05:31 PM Support #3913 (Rejected): New developer
see #3917 Luca Frosini
05:31 PM Support #3913 (In Progress): New developer
Luca Frosini
05:29 PM Support #3913 (Closed): New developer
Please ask to Denis to register to gCube and BlueBRIDGE VREs. After 15 minutes (due to a periodic task synchronizatio... Luca Frosini
06:25 PM Upgrade #3874: Produce Release Notes for gCube 3.11.0
Thank you Nikolas, may I have edit permissions on the file? I'd need to perform some minor edits Massimiliano Assante
06:17 PM Upgrade #3874: Produce Release Notes for gCube 3.11.0
Please, find the gCube 3.11.0 release notes on the following link:
https://goo.gl/MYPxik
Nikolas Laskaris
05:26 PM Support #3979 (Closed): Project's redmine loading time
Luca Frosini
05:25 PM Support #3979 (In Progress): Project's redmine loading time
Hi Giota,
unfortunately projects home page and "My page" are the slowest pages because they made a lot of query on...
Luca Frosini
04:11 PM Support #3979: Project's redmine loading time
The video is available in the following link: http://goo.gl/qdJ4di Panagiota Koltsida
04:08 PM Support #3979 (Closed): Project's redmine loading time
Most of the times it takes too long to load several pages when using the Redmine. Login, jumping to a project and som... Panagiota Koltsida
04:31 PM Task #3980 (Closed): Configure geonetwork users in order to integrate CKAN
Fabio Sinibaldi
03:03 PM Task #3475: Add 2 OrientDB instances
There are 3 file to be configured through ansible scripts:
* ~/orientdb-community-2.1.13/config/orientdb-server-co...
Luca Frosini
12:11 PM Task #3973 (Closed): Deploy VRE-Modeler service on SoBigData VO
Massimiliano Assante
09:57 AM Task #3965 (In Progress): InfluxDB investigation
Alessandro Pieve
09:56 AM Task #3965 (Closed): InfluxDB investigation
Investigating influxdb for accounting analitycs. Alessandro Pieve

May 09, 2016

06:53 PM Upgrade #3875 (Planned): Preprod Gateway upgrade to gCube 3.11.0
Massimiliano Assante
06:51 PM Upgrade #3873 (Planned): D4Science Gateways upgrade to gCube 3.11.0
# **Portals**
The portals should be upgraded using the new mavenized portal bundle 3-11-0
## **Portals to upgra...
Massimiliano Assante
06:38 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Massimiliano Assante
04:40 PM Upgrade #3874 (Planned): Produce Release Notes for gCube 3.11.0
Nikolas Laskaris
11:35 AM Support #3917: Add me as a developer in gCube group
Dear Ioannis the gCube VRE is on services D4Science Gateway, not on i-marine Gateway, please register here: https://... Massimiliano Assante
10:23 AM Support #3917: Add me as a developer in gCube group
@andrea.dellamico@isti.cnr.it Could you please point me to the url I can find the gCube VRE as I can't see it at http... Ioannis Karkalakos
10:45 AM Task #3878: Please create new VM with Elastic Search of Production
Perfect, thanks! Costantino Perciante
10:39 AM Task #3878: Please create new VM with Elastic Search of Production
Connections to port 9300 are allowed only from the servers network, from nb-assante and pc-costantino. Tommaso Piccioli
09:56 AM Task #3878 (Closed): Please create new VM with Elastic Search of Production
I've just checked and it seems fine. I've also prepared the index for the data that is going to be indexed. However, ... Costantino Perciante

May 06, 2016

05:48 PM Task #3475: Add 2 OrientDB instances
I'll provide configuration information in the next days Luca Frosini
05:07 PM Support #3917 (Rejected): Add me as a developer in gCube group
You will be automatically assigned to the Gcube (with a 5 minutes lag) group as soon as your request to join the Gcub... Andrea Dell'Amico
05:02 PM Support #3917 (Rejected): Add me as a developer in gCube group
Please add me as a developer in gCube group in order to be able to be assigned in tickets. Ioannis Karkalakos
04:46 PM Task #3878: Please create new VM with Elastic Search of Production
@costantino.perciante@isti.cnr.it please check the VM and close the ticket if everything is as expected (as it should) Massimiliano Assante
04:30 PM Task #3878 (Feedback): Please create new VM with Elastic Search of Production
elastic0-p-d4s.d4science.org is ready. The configuration is identical to the one on the dev node, the only change is ... Andrea Dell'Amico
03:16 PM Task #3878 (In Progress): Please create new VM with Elastic Search of Production
elastic0-p-d4s.d4science.org will have IP 146.48.122.131
Andrea Dell'Amico
04:44 PM Support #3913 (Rejected): New developer
A fellow developer named Denis Pyriochos, email denispyr@i2s.gr, joined our team and signed into d4science. Could you... Kostas Hirikakis

May 05, 2016

06:29 PM Task #3860 (Closed): Spatial Data Infrastructure services on Ganglia
Sorry, maybe it was my mistake to ask for WP01 as well. @gianpaolo.coro@isti.cnr.it to reopen the ticket either to re... Pasquale Pagano
04:32 PM Task #3860: Spatial Data Infrastructure services on Ganglia
The cluster is active, http://monitoring.research-infrastructures.eu/ganglia/?c=D4Science%20SDI&m=load_one&r=hour&s=b... Andrea Dell'Amico
04:07 PM Task #3860: Spatial Data Infrastructure services on Ganglia
`wps01.i-marine.d4science.org` is not inside our data center. I have no access to it and it will not be able to join ... Andrea Dell'Amico
04:06 PM Task #3860 (In Progress): Spatial Data Infrastructure services on Ganglia
Andrea Dell'Amico
06:07 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Roberto Cirillo wrote:
>
> In addition I don't have access to next.d4science.org as life user and to dev3.d4scie...
Andrea Dell'Amico
05:59 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Roberto Cirillo wrote:
> From monitor, I'm not able to add any kind of resource from /d4science.research-infrastruct...
Massimiliano Assante
05:54 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
it is weird, next.d4science.org is an alias for dev3.d4science.org Massimiliano Assante
05:49 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Could anyone give me access to this VM: "next.d4science.org", please? @tommaso.piccioli@isti.cnr.it @andrea.dellamico... Roberto Cirillo
05:47 PM Support #3881 (In Progress): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
From monitor, I'm not able to add any kind of resource from /d4science.research-infrastructures.eu to /d4science.rese... Roberto Cirillo
02:28 PM Task #3895: Upgrade the jackrabbit devel environment
@valentina.marioli@isti.cnr.it is it doable? I see that the running tomcat runs a lot of apps, most of them installed... Andrea Dell'Amico
02:23 PM Task #3895 (Closed): Upgrade the jackrabbit devel environment
It's currently running on a Ubuntu 9.04 and tomcat is 5.5.
It should be reinstalled on a more modern distribution ...
Andrea Dell'Amico
02:16 PM Task #3833 (Closed): Please enable log rotation on jack rabbit's tomcat production (and dev)
Done on the devel instance too.
Andrea Dell'Amico
02:09 PM Task #3833: Please enable log rotation on jack rabbit's tomcat production (and dev)
workspace-repository-dev.research-infrastructures.eu Massimiliano Assante
02:04 PM Task #3181: Update RStudio on rstudio.d4science.org
@gianpaolo.coro@isti.cnr.it did you have the time to test if rstudio server is working on `rstudio-dev.d4science.org`?
Andrea Dell'Amico
01:59 PM Task #3480 (Closed): Enable SSL on ldap-liferay.d4science.org
Andrea Dell'Amico
12:42 PM Task #3894 (Closed): Create service endpoint resource for SimulFishGrowth DB
over gcube/devsec and devVRE Massimiliano Assante

May 04, 2016

10:48 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Enabling theme in production would have required to restart the production portals, moreover at the time I performed ... Massimiliano Assante
07:40 PM Support #3881 (Feedback): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Why the new VOs were enabled on development portal monitor? They are production VOs and as such they should be on the... Pasquale Pagano
04:22 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Done
https://next.d4science.org/web/guest/monitor
Massimiliano Assante
04:22 PM Support #3881 (In Progress): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
Massimiliano Assante
03:16 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData
I need a portal monitor for check the new VOs: SmartArea and SoBigData.
the new scopes are:
~~~
/d4science.resea...
Roberto Cirillo
07:32 PM Task #3109: VREModeler: nightly restart
The configured cron job didn't work. I just changed it.
Andrea Dell'Amico
02:12 PM Task #3879 (Closed): Deploy and start social-data-indexer-se-plugin on production node
Costantino Perciante
02:08 PM Task #3878 (Closed): Please create new VM with Elastic Search of Production
A new VM having 4 CPU, at least 2GB RAM and 50GB Disk. Elastic Search Version 2.3.2
Ssh access to me and Costantin...
Massimiliano Assante
02:04 PM Task #3876 (Closed): Prepare Elastic Cluster instance for gCube 3.11.0
Massimiliano Assante
02:02 PM Upgrade #3875 (Completed): Preprod Gateway upgrade to gCube 3.11.0
Massimiliano Assante
02:01 PM Upgrade #3874 (Completed): Produce Release Notes for gCube 3.11.0
Massimiliano Assante
12:57 PM Upgrade #3873 (Completed): D4Science Gateways upgrade to gCube 3.11.0
Massimiliano Assante
12:55 PM Upgrade #3872 (Completed): /gcube/preprodVO upgrade to gCube 3.11.0
Massimiliano Assante
12:46 PM Task #1112: Cotrix Portlet undeployment
Cotrix is not an infrastructure application but a community one. If it doesn't work and it is not used, it can be und... Pasquale Pagano
12:26 PM Task #1112: Cotrix Portlet undeployment
We don't use Cotrix anymore since 7 months, i think we may consider to Save this VM hosting the web application and ... Massimiliano Assante
12:44 PM Upgrade #3871 (Completed): D4Science Root VO upgrade to gCube 3.11.0
Massimiliano Assante
12:34 PM Upgrade #3870 (Completed): gCubeApps VO upgrade to gCube 3.11.0
This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.11.0 for the gCubeApps Virtual Organisation Massimiliano Assante
12:32 PM Upgrade #3869 (Completed): FARM VO upgrade to gCube 3.11.0
This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.11.0 for the FARM Virtual Organisation Massimiliano Assante
12:30 PM Upgrade #3868 (Completed): D4Science Infrastructure Upgrade to gCube 3.11.0
This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.11.0 Massimiliano Assante

May 03, 2016

04:39 PM Task #3860 (Closed): Spatial Data Infrastructure services on Ganglia
It is needed to create a new Group on Ganglia named "D4Science SDI" with the following services:
1. geonetwork.d4s...
Pasquale Pagano

May 02, 2016

08:19 PM Task #3834 (Closed): Please enable Ganglia and Nagios check on JackRabbit, data.d4science.org, and access.d4science.org
Thanks. Now, we need only to remember that node76 is JackRabbit ...
Pasquale Pagano
07:35 PM Task #3834 (Feedback): Please enable Ganglia and Nagios check on JackRabbit, data.d4science.org, and access.d4science.org
the jackrabbit host is now under ganglia too.
The nagios check was already there, see #2263. I just switched the c...
Andrea Dell'Amico
05:03 PM Task #3834 (In Progress): Please enable Ganglia and Nagios check on JackRabbit, data.d4science.org, and access.d4science.org
data.d4science.org and access.d4science.org added to the portals cluster.
Andrea Dell'Amico
03:45 PM Task #3834: Please enable Ganglia and Nagios check on JackRabbit, data.d4science.org, and access.d4science.org
Please add to the D4Science Portals clusters.
Moreover, please add on the same cluster also data.d4science.org an...
Pasquale Pagano
03:35 PM Task #3834 (Closed): Please enable Ganglia and Nagios check on JackRabbit, data.d4science.org, and access.d4science.org
on node76.p.d4science.research-infrastructures.eu Massimiliano Assante
07:59 PM Task #3833: Please enable log rotation on jack rabbit's tomcat production (and dev)
Done on `ws-repository-pre-d4s.d4science.org` too. What's the hostname of the dev instance?
Andrea Dell'Amico
07:51 PM Task #3833 (In Progress): Please enable log rotation on jack rabbit's tomcat production (and dev)
Done on the production VM.
Andrea Dell'Amico
03:25 PM Task #3833 (Closed): Please enable log rotation on jack rabbit's tomcat production (and dev)
I found a catalina.out of 1.6 GB. which I saved in the tomcat/logs folder of the jack rabbit repo host machine, the ... Massimiliano Assante
07:33 PM Task #2263: nagios check for the jackrabbit services
Just changed the check URL from `http://node76.p.d4science.research-infrastructures.eu:8080/...` to `https://node76.p... Andrea Dell'Amico
06:27 PM Incident #3840 (Closed): Cannot login on wiki.gcube-system.org anymore
Done. Andrea Dell'Amico
06:25 PM Incident #3840 (In Progress): Cannot login on wiki.gcube-system.org anymore
Yes. Working on it
Andrea Dell'Amico
06:24 PM Incident #3840 (Closed): Cannot login on wiki.gcube-system.org anymore
Probably because the wiki are still using plain ldap:// e non ldaps:// Massimiliano Assante
05:12 PM Task #3821 (Closed): Install SAI on D4Science portal
there you go https://services.d4science.org/group/envriplus/algorithms-importer Massimiliano Assante
04:40 PM Task #3821: Install SAI on D4Science portal
I think we no need further resources on ENVRIPlus VRE. Could you set the portlet hidden for testing in ENVRIPlus VRE? Roberto Cirillo
03:53 PM Task #3821 (In Progress): Install SAI on D4Science portal
Roberto Cirillo
04:29 PM Task #3143 (Closed): Create alias of http://eubrazilopenbio.d4science.org pointing to http://services.d4science.org
eubrazilopenbio.d4science.org is an alias for services.d4science.org
www.eubrazilopenbio.d4science.org is an alias f...
Tommaso Piccioli
04:27 PM Task #3142 (Closed): Dismiss eubrazilopenbio.d4science.org VM
eubrazilopenbio.d4science.org VM removed after backup. Tommaso Piccioli
03:23 PM Incident #3832 (Closed): Cannot upload file on ANY VRE Folder
The jackrabbit repo was restarted successfully from the first tests it seems we're back on regular functioning. The i... Massimiliano Assante
03:01 PM Incident #3832 (Closed): Cannot upload file on ANY VRE Folder
same exception everywhere. Tried in Gcube and iSearch Massimiliano Assante
03:20 PM Incident #3831 (Closed): Cannot upload file on VRE Folder
the JackRabbit repos was restarted successfully, things seems back to normal Massimiliano Assante
03:13 PM Incident #3831: Cannot upload file on VRE Folder
Several operations of the Workspace (like: list a folder, get users belonging to the share, etc.) on the iMarine and ... Francesco Mangiacrapa
02:56 PM Incident #3831 (Closed): Cannot upload file on VRE Folder
I Just created a new VRE for ICES training course on Social Science Methods for Natural Scientists but it seems i'm n... Massimiliano Assante
02:30 PM Task #3480 (Feedback): Enable SSL on ldap-liferay.d4science.org
Done.
Andrea Dell'Amico
12:28 PM Task #2756 (Closed): Dismiss/Restore EuBrazilOpenBio infrastructure
Massimiliano Assante
11:41 AM Support #1122 (Closed): Save historic state
I have created a feature ticket related to this request Lucio Lelii

Apr 28, 2016

06:36 PM Task #3141 (Closed): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
All done. Tommaso Piccioli
10:13 AM Task #3141: Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
I think, we could remove the VM disks now Roberto Cirillo
05:41 PM Task #3821: Install SAI on D4Science portal
it is not a problem to deploy the SAI portlet in ENVRIplus VRE. What are the infra resources needed in ENVRIplus scop... Massimiliano Assante
05:26 PM Task #3821 (Closed): Install SAI on D4Science portal
I would like to add the SAI portlet to the ENVRIplus VRE (that is hosted by the D4Science portal).
Is it possible...
Leonardo Candela
05:39 PM Task #3819 (Closed): new VM for IS-Collector instance in SoBigData VO
collector-sbd.d4science.org up and running Tommaso Piccioli
03:13 PM Task #3819 (Closed): new VM for IS-Collector instance in SoBigData VO
The new VM should host the IS-Collector instance for VO /d4science.research-infrastructures/SoBigData.
It's need:
...
Roberto Cirillo
05:22 PM Task #3820 (Closed): new VM for hosting Registry and Notifier instances in SoBigData VO
registry-sbd.d4science.org up and running Tommaso Piccioli
03:17 PM Task #3820 (Closed): new VM for hosting Registry and Notifier instances in SoBigData VO
The new VM should host the Registry and Notifier gCube services instances for /d4science.research-infrastructures.eu/... Roberto Cirillo
03:44 PM Task #3815 (Closed): Clone "access.d4science.org" VM for development environment
access-d.d4science.org created, up and running. Tommaso Piccioli
01:01 PM Task #3815 (Closed): Clone "access.d4science.org" VM for development environment
Now, the VM "access.d4science.org" is deployed on development environment. We should transfer this VM in production ... Roberto Cirillo
10:51 AM Task #3202 (Closed): add statistical resources to gcube/preprod VO
Roberto Cirillo
10:41 AM Task #3267 (Closed): Add Statistical RuntimeResource to /gcube/preprod VO
Roberto Cirillo
10:07 AM Upgrade #2461 (Completed): D4Science Infrastructure Upgrade to gCube 3.10.1
Roberto Cirillo
10:06 AM Upgrade #2461 (In Progress): D4Science Infrastructure Upgrade to gCube 3.10.1
Roberto Cirillo
10:05 AM Upgrade #2714 (Completed): D4Science Root VO upgrade to gCube 3.10.1
Roberto Cirillo
10:05 AM Upgrade #2714 (In Progress): D4Science Root VO upgrade to gCube 3.10.1
Roberto Cirillo

Apr 27, 2016

06:56 PM Task #2174: Dataminer and Statistical Manager packages
OK.
Andrea Dell'Amico
06:53 PM Task #2174: Dataminer and Statistical Manager packages
Let me explain the approach I suggest: the packages listed here should be prepared for being installed on the StatMan... Gianpaolo Coro
06:45 PM Task #2174: Dataminer and Statistical Manager packages
Questions:
* Do they need to be installed on the rstudio servers too?
* Do you want them installed on the datamin...
Andrea Dell'Amico
06:36 PM Task #2174: Dataminer and Statistical Manager packages
Newly requested are:
~~~
install.packages("geosphere")
install.packages("shapefiles")
~~~
Gianpaolo Coro
06:00 PM Task #3803: Dev4 portal errors when uploading files larger than 3MB
Yes. The new infra is not configured at all right now, I think @massimiliano.assante@isti.cnr.it wants to test the to... Andrea Dell'Amico
05:36 PM Task #3803 (Closed): Dev4 portal errors when uploading files larger than 3MB
Now it seems to work, thanks! Of course, we will need to have the same configuration in production Costantino Perciante
05:24 PM Task #3803 (Feedback): Dev4 portal errors when uploading files larger than 3MB
Raised the haproxy timeouts too.
Andrea Dell'Amico
05:13 PM Task #3803 (In Progress): Dev4 portal errors when uploading files larger than 3MB
Looking at it. Andrea Dell'Amico
05:07 PM Task #3803: Dev4 portal errors when uploading files larger than 3MB
I've just tried: I think you have enlarged the maximum size accepted and in fact the 413 Request Entity Too Large no ... Costantino Perciante
04:58 PM Task #3803 (Feedback): Dev4 portal errors when uploading files larger than 3MB
Done, let me know.
Andrea Dell'Amico
04:54 PM Task #3803: Dev4 portal errors when uploading files larger than 3MB
50 MB would be ok, thanks Costantino Perciante
04:43 PM Task #3803: Dev4 portal errors when uploading files larger than 3MB
What we want as a maximum size for the file uploads?
Andrea Dell'Amico
04:40 PM Task #3803 (In Progress): Dev4 portal errors when uploading files larger than 3MB
The error comes from the nginx server. The pipeline is `haproxy -> nginx -> tomcat`.
I'm working to raise the limi...
Andrea Dell'Amico
04:02 PM Task #3803 (Closed): Dev4 portal errors when uploading files larger than 3MB
Using the dev4 portal, when performing two HTTP/POST calls, one of which contains a file larger than 3MB in its body,... Costantino Perciante
04:56 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
The BrazilianFlora plugin has been added to gCubeApps/EuBrazilOpenBio VRE Roberto Cirillo
02:05 PM Task #3257 (Closed): Create a letsencrypt callback for each service that will serve letsencrypt certificates
Andrea Dell'Amico
02:04 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates
More hooks can be added when needed. The schema is always the same.
Andrea Dell'Amico
02:03 PM Task #3260 (Closed): letsencrypt script for nginx
Fixed a problem with the nginx config snippet, it now works.
Andrea Dell'Amico
11:19 AM Task #3752 (In Progress): merge a new version of a codelist with an existing one
Lucio Lelii

Apr 26, 2016

07:09 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
Thanks. I plan to close the plain text ldap port next Monday.
Andrea Dell'Amico
07:05 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
LDAP configuration changed for production portal successfully, now contacting ldaps://ldap-liferay.d4science.org Massimiliano Assante

Apr 25, 2016

02:31 PM Incident #3784: Chimaera web-service 'gis' endpoint is broken
Thanks Nikolas, I will check with my colleagues why FLOD is down and will report here. Emmanuel Blondel
12:08 PM Incident #3784: Chimaera web-service 'gis' endpoint is broken
Hi all, i have checked the code up to the point it fails with that exception.
I see that it tries to submit a sparql...
Nikolas Laskaris
11:06 AM Incident #3784: Chimaera web-service 'gis' endpoint is broken
There is no specific web-page as the web-service is targeting a resource retrieved by a search operation.
Here are...
Emmanuel Blondel
10:47 AM Incident #3784: Chimaera web-service 'gis' endpoint is broken
Thank you very much for the feedback Emmanuel.
I cannot find any problem in the infrastructure so I will check it...
Kostas Kakaletris
10:34 AM Incident #3784 (In Progress): Chimaera web-service 'gis' endpoint is broken
First thanks Kostas for your prompt reply,
Indeed the other search web-services are working well, but not for the en...
Emmanuel Blondel
09:56 AM Incident #3784 (Closed): Chimaera web-service 'gis' endpoint is broken
Hello Emmanuel.
The application server was restarted and checked the smartfish portal (http://smartfish.d4science...
Kostas Kakaletris
08:27 AM Incident #3784 (Closed): Chimaera web-service 'gis' endpoint is broken
See http://dl051.madgik.di.uoa.gr:8080/smartfish-ds/dataserver/gis?callback=smartfish_response&op=metalayer_of_doc&ta... Emmanuel Blondel

Apr 22, 2016

06:54 PM Task #3260 (Feedback): letsencrypt script for nginx
Configuration and hooks are ready to be tested.
Andrea Dell'Amico
06:41 PM Task #3260 (In Progress): letsencrypt script for nginx
Andrea Dell'Amico
06:07 PM Task #3259 (Closed): letsencrypt script for apache
Andrea Dell'Amico
06:07 PM Task #3259 (In Progress): letsencrypt script for apache
apache has its callback now.
Andrea Dell'Amico

Apr 21, 2016

11:46 PM Task #2174: Dataminer and Statistical Manager packages
The statistical manager nodes now have all the new modules installed. Andrea Dell'Amico
01:26 PM Task #2174: Dataminer and Statistical Manager packages
I see that the rgl package needs the GL include files. All the other new packages have just been installed on the pro... Andrea Dell'Amico
01:22 PM Task #2174: Dataminer and Statistical Manager packages
Gianpaolo Coro wrote:
> Hi Andrea, the packages should be aligned between StatMan and Dataminer, because the latter ...
Andrea Dell'Amico
11:31 AM Task #2174: Dataminer and Statistical Manager packages
Hi Andrea, the packages should be aligned between StatMan and Dataminer, because the latter is going to substitute th... Gianpaolo Coro
11:24 AM Task #2174: Dataminer and Statistical Manager packages
New requests for packages on the statistical manager (and dataminer too?):
~~~
- lubridate
- dplyr
- tidy...
Andrea Dell'Amico
04:58 PM Task #3569 (Closed): create alias for dev.d4science.org and dev3.d4science.org
Massimiliano Assante
04:16 PM Task #3569: create alias for dev.d4science.org and dev3.d4science.org
Done:
staging.d4science.org is an alias for dev.d4science.org
next.d4science.org is an alias for dev3.d4science.org...
Tommaso Piccioli
03:54 PM Task #3569: create alias for dev.d4science.org and dev3.d4science.org
@tommaso.piccioli@isti.cnr.it please create aliases as follows and remove the previous ones (devnext.d4science.org an... Massimiliano Assante
02:47 PM Task #3569 (In Progress): create alias for dev.d4science.org and dev3.d4science.org
Fine for me. Please proceed. Pasquale Pagano
01:10 PM Task #3569 (Feedback): create alias for dev.d4science.org and dev3.d4science.org
Massimiliano Assante
01:10 PM Task #3569 (In Progress): create alias for dev.d4science.org and dev3.d4science.org
@pasquale.pagano@isti.cnr.it ,I just realised there will be an issue, in the upcoming Liferay 6.2 portal, if we name ... Massimiliano Assante
01:15 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates
The `letsencrypt-acmetool-client` role is to be always preferred to the `letsencrypt-client` one. The alternative cli... Andrea Dell'Amico
01:13 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
I also put in place some ansible tasks to create a self signed certificate **before** the first execution of a letsen... Andrea Dell'Amico
01:10 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
The sobigdata.eu drupal instance has started using ssl, FIY.
Andrea Dell'Amico
12:53 PM Incident #3768 (Closed): Auth service down in /gcube/devNext
Lucio Lelii
12:22 PM Incident #3768: Auth service down in /gcube/devNext
I guess there is a problem with couchDB on devNext.
In attachment the exception found on Authorization service log f...
Roberto Cirillo
11:53 AM Incident #3768 (Closed): Auth service down in /gcube/devNext
~~~
2016-04-21 09:49:57,013 INFO icclient.ICClient [TP-Processor2,callService:83] %[PORTAL] 178062 [TP-Processor2] ...
Massimiliano Assante

Apr 20, 2016

05:38 PM Incident #3765 (Closed): FAO Tuna Atlas; left panel stats and what's new fail to load
The issue is due to some missing files:
* IOTC-2015-WPTT17-DATA07- CECoastal.csv
* IOTC-2015-WPTT17-DATA06- CESurfa...
Valentina Marioli
03:40 PM Incident #3765 (In Progress): FAO Tuna Atlas; left panel stats and what's new fail to load
Valentina Marioli
03:35 PM Incident #3765: FAO Tuna Atlas; left panel stats and what's new fail to load
Stats was not deployed in FAO_TunaAtlas VRE, now it is. Top Topics is not shown because there aren't topics at all in... Massimiliano Assante
03:14 PM Incident #3765 (Closed): FAO Tuna Atlas; left panel stats and what's new fail to load
It seems that the stats, toptopics and whatsnew fail to load in FAo TA.
It says "report issue" I duly oblige
Anton Ellenbroek
05:27 PM Incident #3755 (Closed): Auth service down in /gcube/preprod and /gcube/devsec
Lucio Lelii
10:40 AM Incident #3755: Auth service down in /gcube/preprod and /gcube/devsec
Auth service is down on both /gcube/preprod and /gcube/devsec Massimiliano Assante
10:31 AM Incident #3755: Auth service down in /gcube/preprod and /gcube/devsec
~~~
[PORTAL] 422790 [TP-Processor6] TRACE org.gcube.common.authorization.library.provider.CalledMethodProvider - se...
Massimiliano Assante
10:30 AM Incident #3755 (Closed): Auth service down in /gcube/preprod and /gcube/devsec
Massimiliano Assante
03:30 PM Task #3752: merge a new version of a codelist with an existing one
I changed the tracker since this is a task that CNR will try to perform. It may require changes in the service that w... Pasquale Pagano
02:13 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
The ldap server is now running with ssl enabled.
This redmine instance is already configured to bind on the ssl port.
Andrea Dell'Amico
11:28 AM Incident #3757 (Closed): Please upgrade disk quota on couchdb instances both dev and production
Host Size Used Avail Use% Mounted on
couchdb01-d-d4s 140G 65G 76G 47% /
couchdb02-d-d4s ...
Tommaso Piccioli
11:08 AM Incident #3757 (Closed): Please upgrade disk quota on couchdb instances both dev and production
Luca Frosini

Apr 19, 2016

07:20 PM Task #3712 (In Progress): VRE Manager service on /gcube/devNext is missing
I have added to devNext the VreModeler already deployed in devsec, now it's up and running in both scopes. Can you ch... Lucio Lelii
06:00 PM Task #3712: VRE Manager service on /gcube/devNext is missing
@roberto.cirillo@isti.cnr.it I'm assigning this task to @lucio.lelii@isti.cnr.it as is the developer in charge of dep... Massimiliano Assante
12:13 PM Task #3712 (Closed): VRE Manager service on /gcube/devNext is missing
Please deploy VRE Manager service on /gcube/devNext Massimiliano Assante
06:54 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
It's already there, it's listed together with the production hosts.
Andrea Dell'Amico
06:50 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
also on preprod.d4science.org please Massimiliano Assante
06:45 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
The new keyring has been installed on:
~~~
descramble.d4science.org
egip.d4science.org
i-marine.d4science.org
...
Andrea Dell'Amico
05:53 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
I'm installing the new keyring on all the portal hosts.
It should not be needed on any other servers with an up to d...
Andrea Dell'Amico
05:51 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
now in dev.d4science.org it worked
~~~
2016-04-19 15:49:21,900 INFO ldapexport.LDAPSync [http-9090-1,<init>:52] ...
Massimiliano Assante
12:40 PM Task #3480: Enable SSL on ldap-liferay.d4science.org

The CA used by letsencrypt is not known to the JRE, but the problem lies here:
~~~
-Djavax.net.ssl.trustStore=/...
Andrea Dell'Amico
12:20 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
tried in dev, have the following exception
~~~
javax.naming.CommunicationException: simple bind failed: ldap-d.d4...
Massimiliano Assante
11:24 AM Task #3480: Enable SSL on ldap-liferay.d4science.org
Andrea Dell'Amico wrote:
> * I also added two aliases, because `ldap-liferay` is now misleading: ldap-d.d4science....
Andrea Dell'Amico
11:17 AM Task #3480: Enable SSL on ldap-liferay.d4science.org

* Yes, the development ldap server is under ssl already.
* I also added two aliases, because `ldap-liferay` is now...
Andrea Dell'Amico
11:11 AM Task #3480 (In Progress): Enable SSL on ldap-liferay.d4science.org
I'm available to discuss about this. If I understand correctly we need to change the service endpoint configuration p... Massimiliano Assante
05:15 PM Support #3750 (Closed): Edit Tabular resource
Giancarlo Panichi
05:00 PM Support #3750 (In Progress): Edit Tabular resource
* Can double click open a edit window?
I think so, I must investigate.
* Can the Buttons be changed in the edit w...
Giancarlo Panichi
03:37 PM Support #3750 (Closed): Edit Tabular resource
When editing a record in a tabular resource, user friendliness is limited, and the following are suggestions to impro... Anton Ellenbroek
04:22 PM Task #3752 (Closed): merge a new version of a codelist with an existing one
FAO recently released a new version of the ASFIS list of species. I shared the resource with Lucio.
We ask for a ...
Anton Ellenbroek
11:21 AM Task #3481 (Closed): Add ldap.d4science.org as CNAME of ldap-liferay.d4science.org
Also added ldap-d.d4science.org as CNAME for ldap-liferay-d.d4science.org
Andrea Dell'Amico

Apr 18, 2016

05:37 PM Task #3254 (Closed): Fix Notification added items path on Production
@costantino.perciante@isti.cnr.it successfully executed the script for editing and setting the correct items path on... Massimiliano Assante
05:35 PM Task #3254 (In Progress): Fix Notification added items path on Production
Massimiliano Assante
05:13 PM Task #3355 (Closed): enable backup for cassandra production cluster
Tommaso Piccioli
05:13 PM Task #3355: enable backup for cassandra production cluster
2016-04-18 17:05:08 Finished full backup on cassandra1-p-d4s.d4science.org
2016-04-18 17:07:37 Finished full backup ...
Tommaso Piccioli
04:03 PM Task #3355: enable backup for cassandra production cluster
I am configuring the backup now, I will close the ticket as soon as the first backup is done for all the three hosts. Tommaso Piccioli
03:17 PM Task #3355: enable backup for cassandra production cluster
any update on this? it is blocking Task #3254: Fix Notification added items path on Production added Massimiliano Assante
03:09 PM Task #2516 (Paused): Provide RStudio in the e-Infrastructure VREs
Massimiliano Assante
02:57 PM Task #2705 (Closed): Create new VM for production Infrastructure Gateway (Liferay 6.2)
not at the moment, thanks. Massimiliano Assante
01:00 PM Task #3569 (Closed): create alias for dev.d4science.org and dev3.d4science.org
Done
devsec.d4science.org is an alias for dev.d4science.org.
devnext.d4science.org is an alias for dev3.d4science.o...
Tommaso Piccioli
12:48 PM Task #3569 (Closed): create alias for dev.d4science.org and dev3.d4science.org
* dev.d4science.org as devsec.d4science.org
* dev3.d4science.org as devnext.d4science.org
Massimiliano Assante
10:36 AM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail
To perform a replace applying a rule is not the correct operation, rules performs only validation on columns. The rig... Lucio Lelii
 

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