Activity

From Apr 12, 2016 to May 11, 2016

May 11, 2016

12:32 PM Task #3475: Add 2 OrientDB instances: Can you also create a txt DNS record as described here:
http://orientdb.com/docs/last/Distributed-Configuration.html... Luca Frosini

May 10, 2016

10:51 PM Task #3985 (Closed): Subversion access: Allow access to subversion to @denispyr@i2s.gr Denis Pyriochos
06:33 PM Task #3984 (In Progress): Please check Redmine bottleneck and provide more resources if possible/feasible: I am trying to tune resource parameters, I will restart the server this evening. Tommaso Piccioli
05:25 PM Task #3984 (Closed): Please check Redmine bottleneck and provide more resources if possible/feasible: Luca Frosini
06:33 PM Support #3913 (Rejected): New developer: Can you please open a ticket (Task type) to Infrascience System Engineers? Luca Frosini
05:40 PM Support #3913 (In Progress): New developer: I am reopening the ticket as it asks for subversion access too. Or should he open a new ticket on this? Kostas Hirikakis
05:31 PM Support #3913 (Rejected): New developer: see #3917 Luca Frosini
05:31 PM Support #3913 (In Progress): New developer: Luca Frosini
05:29 PM Support #3913 (Closed): New developer: Please ask to Denis to register to gCube and BlueBRIDGE VREs. After 15 minutes (due to a periodic task synchronizatio... Luca Frosini
06:25 PM Upgrade #3874: Produce Release Notes for gCube 3.11.0: Thank you Nikolas, may I have edit permissions on the file? I'd need to perform some minor edits Massimiliano Assante
06:17 PM Upgrade #3874: Produce Release Notes for gCube 3.11.0: Please, find the gCube 3.11.0 release notes on the following link:
https://goo.gl/MYPxik Nikolas Laskaris
05:26 PM Support #3979 (Closed): Project's redmine loading time: Luca Frosini
05:25 PM Support #3979 (In Progress): Project's redmine loading time: Hi Giota,
unfortunately projects home page and "My page" are the slowest pages because they made a lot of query on... Luca Frosini
04:11 PM Support #3979: Project's redmine loading time: The video is available in the following link: http://goo.gl/qdJ4di Panagiota Koltsida
04:08 PM Support #3979 (Closed): Project's redmine loading time: Most of the times it takes too long to load several pages when using the Redmine. Login, jumping to a project and som... Panagiota Koltsida
04:31 PM Task #3980 (Closed): Configure geonetwork users in order to integrate CKAN: Fabio Sinibaldi
03:03 PM Task #3475: Add 2 OrientDB instances: There are 3 file to be configured through ansible scripts:
* ~/orientdb-community-2.1.13/config/orientdb-server-co... Luca Frosini
12:11 PM Task #3973 (Closed): Deploy VRE-Modeler service on SoBigData VO: Massimiliano Assante
09:57 AM Task #3965 (In Progress): InfluxDB investigation: Alessandro Pieve
09:56 AM Task #3965 (Closed): InfluxDB investigation: Investigating influxdb for accounting analitycs. Alessandro Pieve

May 09, 2016

06:53 PM Upgrade #3875 (Planned): Preprod Gateway upgrade to gCube 3.11.0: Massimiliano Assante
06:51 PM Upgrade #3873 (Planned): D4Science Gateways upgrade to gCube 3.11.0: # **Portals**
The portals should be upgraded using the new mavenized portal bundle 3-11-0
## **Portals to upgra... Massimiliano Assante
06:38 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Massimiliano Assante
04:40 PM Upgrade #3874 (Planned): Produce Release Notes for gCube 3.11.0: Nikolas Laskaris
11:35 AM Support #3917: Add me as a developer in gCube group: Dear Ioannis the gCube VRE is on services D4Science Gateway, not on i-marine Gateway, please register here: https://... Massimiliano Assante
10:23 AM Support #3917: Add me as a developer in gCube group: @andrea.dellamico@isti.cnr.it Could you please point me to the url I can find the gCube VRE as I can't see it at http... Ioannis Karkalakos
10:45 AM Task #3878: Please create new VM with Elastic Search of Production: Perfect, thanks! Costantino Perciante
10:39 AM Task #3878: Please create new VM with Elastic Search of Production: Connections to port 9300 are allowed only from the servers network, from nb-assante and pc-costantino. Tommaso Piccioli
09:56 AM Task #3878 (Closed): Please create new VM with Elastic Search of Production: I've just checked and it seems fine. I've also prepared the index for the data that is going to be indexed. However, ... Costantino Perciante

May 06, 2016

05:48 PM Task #3475: Add 2 OrientDB instances: I'll provide configuration information in the next days Luca Frosini
05:07 PM Support #3917 (Rejected): Add me as a developer in gCube group: You will be automatically assigned to the Gcube (with a 5 minutes lag) group as soon as your request to join the Gcub... Andrea Dell'Amico
05:02 PM Support #3917 (Rejected): Add me as a developer in gCube group: Please add me as a developer in gCube group in order to be able to be assigned in tickets. Ioannis Karkalakos
04:46 PM Task #3878: Please create new VM with Elastic Search of Production: @costantino.perciante@isti.cnr.it please check the VM and close the ticket if everything is as expected (as it should) Massimiliano Assante
04:30 PM Task #3878 (Feedback): Please create new VM with Elastic Search of Production: elastic0-p-d4s.d4science.org is ready. The configuration is identical to the one on the dev node, the only change is ... Andrea Dell'Amico
03:16 PM Task #3878 (In Progress): Please create new VM with Elastic Search of Production: elastic0-p-d4s.d4science.org will have IP 146.48.122.131
Andrea Dell'Amico
04:44 PM Support #3913 (Rejected): New developer: A fellow developer named Denis Pyriochos, email denispyr@i2s.gr, joined our team and signed into d4science. Could you... Kostas Hirikakis

May 05, 2016

06:29 PM Task #3860 (Closed): Spatial Data Infrastructure services on Ganglia: Sorry, maybe it was my mistake to ask for WP01 as well. @gianpaolo.coro@isti.cnr.it to reopen the ticket either to re... Pasquale Pagano
04:32 PM Task #3860: Spatial Data Infrastructure services on Ganglia: The cluster is active, http://monitoring.research-infrastructures.eu/ganglia/?c=D4Science%20SDI&m=load_one&r=hour&s=b... Andrea Dell'Amico
04:07 PM Task #3860: Spatial Data Infrastructure services on Ganglia: `wps01.i-marine.d4science.org` is not inside our data center. I have no access to it and it will not be able to join ... Andrea Dell'Amico
04:06 PM Task #3860 (In Progress): Spatial Data Infrastructure services on Ganglia: Andrea Dell'Amico
06:07 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Roberto Cirillo wrote:
>
> In addition I don't have access to next.d4science.org as life user and to dev3.d4scie... Andrea Dell'Amico
05:59 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Roberto Cirillo wrote:
> From monitor, I'm not able to add any kind of resource from /d4science.research-infrastruct... Massimiliano Assante
05:54 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: it is weird, next.d4science.org is an alias for dev3.d4science.org Massimiliano Assante
05:49 PM Support #3881: Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Could anyone give me access to this VM: "next.d4science.org", please? @tommaso.piccioli@isti.cnr.it @andrea.dellamico... Roberto Cirillo
05:47 PM Support #3881 (In Progress): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: From monitor, I'm not able to add any kind of resource from /d4science.research-infrastructures.eu to /d4science.rese... Roberto Cirillo
02:28 PM Task #3895: Upgrade the jackrabbit devel environment: @valentina.marioli@isti.cnr.it is it doable? I see that the running tomcat runs a lot of apps, most of them installed... Andrea Dell'Amico
02:23 PM Task #3895 (Closed): Upgrade the jackrabbit devel environment: It's currently running on a Ubuntu 9.04 and tomcat is 5.5.
It should be reinstalled on a more modern distribution ... Andrea Dell'Amico
02:16 PM Task #3833 (Closed): Please enable log rotation on jack rabbit's tomcat production (and dev): Done on the devel instance too.
Andrea Dell'Amico
02:09 PM Task #3833: Please enable log rotation on jack rabbit's tomcat production (and dev): workspace-repository-dev.research-infrastructures.eu Massimiliano Assante
02:04 PM Task #3181: Update RStudio on rstudio.d4science.org: @gianpaolo.coro@isti.cnr.it did you have the time to test if rstudio server is working on `rstudio-dev.d4science.org`?
Andrea Dell'Amico
01:59 PM Task #3480 (Closed): Enable SSL on ldap-liferay.d4science.org: Andrea Dell'Amico
12:42 PM Task #3894 (Closed): Create service endpoint resource for SimulFishGrowth DB: over gcube/devsec and devVRE Massimiliano Assante

May 04, 2016

10:48 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Enabling theme in production would have required to restart the production portals, moreover at the time I performed ... Massimiliano Assante
07:40 PM Support #3881 (Feedback): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Why the new VOs were enabled on development portal monitor? They are production VOs and as such they should be on the... Pasquale Pagano
04:22 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Done
https://next.d4science.org/web/guest/monitor Massimiliano Assante
04:22 PM Support #3881 (In Progress): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: Massimiliano Assante
03:16 PM Support #3881 (Closed): Enable a portal monitor for discovering new VOs: SmartArea, SoBigData: I need a portal monitor for check the new VOs: SmartArea and SoBigData.
the new scopes are:
~~~
/d4science.resea... Roberto Cirillo
07:32 PM Task #3109: VREModeler: nightly restart: The configured cron job didn't work. I just changed it.
Andrea Dell'Amico
02:12 PM Task #3879 (Closed): Deploy and start social-data-indexer-se-plugin on production node: Costantino Perciante
02:08 PM Task #3878 (Closed): Please create new VM with Elastic Search of Production: A new VM having 4 CPU, at least 2GB RAM and 50GB Disk. Elastic Search Version 2.3.2
Ssh access to me and Costantin... Massimiliano Assante
02:04 PM Task #3876 (Closed): Prepare Elastic Cluster instance for gCube 3.11.0: Massimiliano Assante
02:02 PM Upgrade #3875 (Completed): Preprod Gateway upgrade to gCube 3.11.0: Massimiliano Assante
02:01 PM Upgrade #3874 (Completed): Produce Release Notes for gCube 3.11.0: Massimiliano Assante
12:57 PM Upgrade #3873 (Completed): D4Science Gateways upgrade to gCube 3.11.0: Massimiliano Assante
12:55 PM Upgrade #3872 (Completed): /gcube/preprodVO upgrade to gCube 3.11.0: Massimiliano Assante
12:46 PM Task #1112: Cotrix Portlet undeployment: Cotrix is not an infrastructure application but a community one. If it doesn't work and it is not used, it can be und... Pasquale Pagano
12:26 PM Task #1112: Cotrix Portlet undeployment: We don't use Cotrix anymore since 7 months, i think we may consider to Save this VM hosting the web application and ... Massimiliano Assante
12:44 PM Upgrade #3871 (Completed): D4Science Root VO upgrade to gCube 3.11.0: Massimiliano Assante
12:34 PM Upgrade #3870 (Completed): gCubeApps VO upgrade to gCube 3.11.0: This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.11.0 for the gCubeApps Virtual Organisation Massimiliano Assante
12:32 PM Upgrade #3869 (Completed): FARM VO upgrade to gCube 3.11.0: This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.11.0 for the FARM Virtual Organisation Massimiliano Assante
12:30 PM Upgrade #3868 (Completed): D4Science Infrastructure Upgrade to gCube 3.11.0: This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.11.0 Massimiliano Assante

May 03, 2016

04:39 PM Task #3860 (Closed): Spatial Data Infrastructure services on Ganglia: It is needed to create a new Group on Ganglia named "D4Science SDI" with the following services:
1. geonetwork.d4s... Pasquale Pagano

Apr 26, 2016

07:09 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: Thanks. I plan to close the plain text ldap port next Monday.
Andrea Dell'Amico
07:05 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: LDAP configuration changed for production portal successfully, now contacting ldaps://ldap-liferay.d4science.org Massimiliano Assante

Apr 25, 2016

02:31 PM Incident #3784: Chimaera web-service 'gis' endpoint is broken: Thanks Nikolas, I will check with my colleagues why FLOD is down and will report here. Emmanuel Blondel
12:08 PM Incident #3784: Chimaera web-service 'gis' endpoint is broken: Hi all, i have checked the code up to the point it fails with that exception.
I see that it tries to submit a sparql... Nikolas Laskaris
11:06 AM Incident #3784: Chimaera web-service 'gis' endpoint is broken: There is no specific web-page as the web-service is targeting a resource retrieved by a search operation.
Here are... Emmanuel Blondel
10:47 AM Incident #3784: Chimaera web-service 'gis' endpoint is broken: Thank you very much for the feedback Emmanuel.
I cannot find any problem in the infrastructure so I will check it... Kostas Kakaletris
10:34 AM Incident #3784 (In Progress): Chimaera web-service 'gis' endpoint is broken: First thanks Kostas for your prompt reply,
Indeed the other search web-services are working well, but not for the en... Emmanuel Blondel
09:56 AM Incident #3784 (Closed): Chimaera web-service 'gis' endpoint is broken: Hello Emmanuel.
The application server was restarted and checked the smartfish portal (http://smartfish.d4science... Kostas Kakaletris
08:27 AM Incident #3784 (Closed): Chimaera web-service 'gis' endpoint is broken: See http://dl051.madgik.di.uoa.gr:8080/smartfish-ds/dataserver/gis?callback=smartfish_response&op=metalayer_of_doc&ta... Emmanuel Blondel

Apr 22, 2016

06:54 PM Task #3260 (Feedback): letsencrypt script for nginx: Configuration and hooks are ready to be tested.
Andrea Dell'Amico
06:41 PM Task #3260 (In Progress): letsencrypt script for nginx: Andrea Dell'Amico
06:07 PM Task #3259 (Closed): letsencrypt script for apache: Andrea Dell'Amico
06:07 PM Task #3259 (In Progress): letsencrypt script for apache: apache has its callback now.
Andrea Dell'Amico

Apr 21, 2016

11:46 PM Task #2174: Dataminer and Statistical Manager packages: The statistical manager nodes now have all the new modules installed. Andrea Dell'Amico
01:26 PM Task #2174: Dataminer and Statistical Manager packages: I see that the rgl package needs the GL include files. All the other new packages have just been installed on the pro... Andrea Dell'Amico
01:22 PM Task #2174: Dataminer and Statistical Manager packages: Gianpaolo Coro wrote:
> Hi Andrea, the packages should be aligned between StatMan and Dataminer, because the latter ... Andrea Dell'Amico
11:31 AM Task #2174: Dataminer and Statistical Manager packages: Hi Andrea, the packages should be aligned between StatMan and Dataminer, because the latter is going to substitute th... Gianpaolo Coro
11:24 AM Task #2174: Dataminer and Statistical Manager packages: New requests for packages on the statistical manager (and dataminer too?):
~~~
- lubridate
- dplyr
- tidy... Andrea Dell'Amico
04:58 PM Task #3569 (Closed): create alias for dev.d4science.org and dev3.d4science.org: Massimiliano Assante
04:16 PM Task #3569: create alias for dev.d4science.org and dev3.d4science.org: Done:
staging.d4science.org is an alias for dev.d4science.org
next.d4science.org is an alias for dev3.d4science.org... Tommaso Piccioli
03:54 PM Task #3569: create alias for dev.d4science.org and dev3.d4science.org: @tommaso.piccioli@isti.cnr.it please create aliases as follows and remove the previous ones (devnext.d4science.org an... Massimiliano Assante
02:47 PM Task #3569 (In Progress): create alias for dev.d4science.org and dev3.d4science.org: Fine for me. Please proceed. Pasquale Pagano
01:10 PM Task #3569 (Feedback): create alias for dev.d4science.org and dev3.d4science.org: Massimiliano Assante
01:10 PM Task #3569 (In Progress): create alias for dev.d4science.org and dev3.d4science.org: @pasquale.pagano@isti.cnr.it ,I just realised there will be an issue, in the upcoming Liferay 6.2 portal, if we name ... Massimiliano Assante
01:15 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates: The `letsencrypt-acmetool-client` role is to be always preferred to the `letsencrypt-client` one. The alternative cli... Andrea Dell'Amico
01:13 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: I also put in place some ansible tasks to create a self signed certificate **before** the first execution of a letsen... Andrea Dell'Amico
01:10 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: The sobigdata.eu drupal instance has started using ssl, FIY.
Andrea Dell'Amico
12:53 PM Incident #3768 (Closed): Auth service down in /gcube/devNext: Lucio Lelii
12:22 PM Incident #3768: Auth service down in /gcube/devNext: I guess there is a problem with couchDB on devNext.
In attachment the exception found on Authorization service log f... Roberto Cirillo
11:53 AM Incident #3768 (Closed): Auth service down in /gcube/devNext: ~~~
2016-04-21 09:49:57,013 INFO icclient.ICClient [TP-Processor2,callService:83] %[PORTAL] 178062 [TP-Processor2] ... Massimiliano Assante

Apr 20, 2016

05:38 PM Incident #3765 (Closed): FAO Tuna Atlas; left panel stats and what's new fail to load: The issue is due to some missing files:
* IOTC-2015-WPTT17-DATA07- CECoastal.csv
* IOTC-2015-WPTT17-DATA06- CESurfa... Valentina Marioli
03:40 PM Incident #3765 (In Progress): FAO Tuna Atlas; left panel stats and what's new fail to load: Valentina Marioli
03:35 PM Incident #3765: FAO Tuna Atlas; left panel stats and what's new fail to load: Stats was not deployed in FAO_TunaAtlas VRE, now it is. Top Topics is not shown because there aren't topics at all in... Massimiliano Assante
03:14 PM Incident #3765 (Closed): FAO Tuna Atlas; left panel stats and what's new fail to load: It seems that the stats, toptopics and whatsnew fail to load in FAo TA.
It says "report issue" I duly oblige Anton Ellenbroek
05:27 PM Incident #3755 (Closed): Auth service down in /gcube/preprod and /gcube/devsec: Lucio Lelii
10:40 AM Incident #3755: Auth service down in /gcube/preprod and /gcube/devsec: Auth service is down on both /gcube/preprod and /gcube/devsec Massimiliano Assante
10:31 AM Incident #3755: Auth service down in /gcube/preprod and /gcube/devsec: ~~~
[PORTAL] 422790 [TP-Processor6] TRACE org.gcube.common.authorization.library.provider.CalledMethodProvider - se... Massimiliano Assante
10:30 AM Incident #3755 (Closed): Auth service down in /gcube/preprod and /gcube/devsec: Massimiliano Assante
03:30 PM Task #3752: merge a new version of a codelist with an existing one: I changed the tracker since this is a task that CNR will try to perform. It may require changes in the service that w... Pasquale Pagano
02:13 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: The ldap server is now running with ssl enabled.
This redmine instance is already configured to bind on the ssl port.
Andrea Dell'Amico
11:28 AM Incident #3757 (Closed): Please upgrade disk quota on couchdb instances both dev and production: Host Size Used Avail Use% Mounted on
couchdb01-d-d4s 140G 65G 76G 47% /
couchdb02-d-d4s ... Tommaso Piccioli
11:08 AM Incident #3757 (Closed): Please upgrade disk quota on couchdb instances both dev and production: Luca Frosini

Apr 19, 2016

07:20 PM Task #3712 (In Progress): VRE Manager service on /gcube/devNext is missing: I have added to devNext the VreModeler already deployed in devsec, now it's up and running in both scopes. Can you ch... Lucio Lelii
06:00 PM Task #3712: VRE Manager service on /gcube/devNext is missing: @roberto.cirillo@isti.cnr.it I'm assigning this task to @lucio.lelii@isti.cnr.it as is the developer in charge of dep... Massimiliano Assante
12:13 PM Task #3712 (Closed): VRE Manager service on /gcube/devNext is missing: Please deploy VRE Manager service on /gcube/devNext Massimiliano Assante
06:54 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: It's already there, it's listed together with the production hosts.
Andrea Dell'Amico
06:50 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: also on preprod.d4science.org please Massimiliano Assante
06:45 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: The new keyring has been installed on:
~~~
descramble.d4science.org
egip.d4science.org
i-marine.d4science.org
... Andrea Dell'Amico
05:53 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: I'm installing the new keyring on all the portal hosts.
It should not be needed on any other servers with an up to d... Andrea Dell'Amico
05:51 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: now in dev.d4science.org it worked
~~~
2016-04-19 15:49:21,900 INFO ldapexport.LDAPSync [http-9090-1,<init>:52] ... Massimiliano Assante
12:40 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: The CA used by letsencrypt is not known to the JRE, but the problem lies here:
~~~
-Djavax.net.ssl.trustStore=/... Andrea Dell'Amico
12:20 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: tried in dev, have the following exception
~~~
javax.naming.CommunicationException: simple bind failed: ldap-d.d4... Massimiliano Assante
11:24 AM Task #3480: Enable SSL on ldap-liferay.d4science.org: Andrea Dell'Amico wrote:
> * I also added two aliases, because `ldap-liferay` is now misleading: ldap-d.d4science.... Andrea Dell'Amico
11:17 AM Task #3480: Enable SSL on ldap-liferay.d4science.org: * Yes, the development ldap server is under ssl already.
* I also added two aliases, because `ldap-liferay` is now... Andrea Dell'Amico
11:11 AM Task #3480 (In Progress): Enable SSL on ldap-liferay.d4science.org: I'm available to discuss about this. If I understand correctly we need to change the service endpoint configuration p... Massimiliano Assante
05:15 PM Support #3750 (Closed): Edit Tabular resource: Giancarlo Panichi
05:00 PM Support #3750 (In Progress): Edit Tabular resource: * Can double click open a edit window?
I think so, I must investigate.
* Can the Buttons be changed in the edit w... Giancarlo Panichi
03:37 PM Support #3750 (Closed): Edit Tabular resource: When editing a record in a tabular resource, user friendliness is limited, and the following are suggestions to impro... Anton Ellenbroek
04:22 PM Task #3752 (Closed): merge a new version of a codelist with an existing one: FAO recently released a new version of the ASFIS list of species. I shared the resource with Lucio.
We ask for a ... Anton Ellenbroek
11:21 AM Task #3481 (Closed): Add ldap.d4science.org as CNAME of ldap-liferay.d4science.org: Also added ldap-d.d4science.org as CNAME for ldap-liferay-d.d4science.org
Andrea Dell'Amico

Apr 18, 2016

05:37 PM Task #3254 (Closed): Fix Notification added items path on Production: @costantino.perciante@isti.cnr.it successfully executed the script for editing and setting the correct items path on... Massimiliano Assante
05:35 PM Task #3254 (In Progress): Fix Notification added items path on Production: Massimiliano Assante
05:13 PM Task #3355 (Closed): enable backup for cassandra production cluster: Tommaso Piccioli
05:13 PM Task #3355: enable backup for cassandra production cluster: 2016-04-18 17:05:08 Finished full backup on cassandra1-p-d4s.d4science.org
2016-04-18 17:07:37 Finished full backup ... Tommaso Piccioli
04:03 PM Task #3355: enable backup for cassandra production cluster: I am configuring the backup now, I will close the ticket as soon as the first backup is done for all the three hosts. Tommaso Piccioli
03:17 PM Task #3355: enable backup for cassandra production cluster: any update on this? it is blocking Task #3254: Fix Notification added items path on Production added Massimiliano Assante
03:09 PM Task #2516 (Paused): Provide RStudio in the e-Infrastructure VREs: Massimiliano Assante
02:57 PM Task #2705 (Closed): Create new VM for production Infrastructure Gateway (Liferay 6.2): not at the moment, thanks. Massimiliano Assante
01:00 PM Task #3569 (Closed): create alias for dev.d4science.org and dev3.d4science.org: Done
devsec.d4science.org is an alias for dev.d4science.org.
devnext.d4science.org is an alias for dev3.d4science.o... Tommaso Piccioli
12:48 PM Task #3569 (Closed): create alias for dev.d4science.org and dev3.d4science.org: * dev.d4science.org as devsec.d4science.org
* dev3.d4science.org as devnext.d4science.org Massimiliano Assante
10:36 AM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail: To perform a replace applying a rule is not the correct operation, rules performs only validation on columns. The rig... Lucio Lelii

Apr 15, 2016

08:49 PM Task #3481 (Closed): Add ldap.d4science.org as CNAME of ldap-liferay.d4science.org: This ldap will serve all the infrastructure.
Andrea Dell'Amico
08:48 PM Task #3480: Enable SSL on ldap-liferay.d4science.org: @massimiliano.assante@isti.cnr.it let me know when we can make the configuration change. A ldap restart is needed. It... Andrea Dell'Amico
08:46 PM Task #3480 (Closed): Enable SSL on ldap-liferay.d4science.org: The service is still using non encrypted connections.
When all the services will have switched to the encrypted co... Andrea Dell'Amico
08:43 PM Task #3164 (Closed): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: Closing this one. letsencrypt is a viable solution, the related task is tracking the progress on the services configu... Andrea Dell'Amico
08:41 PM Task #2705 (Feedback): Create new VM for production Infrastructure Gateway (Liferay 6.2): Are there any other requirements?
Andrea Dell'Amico
08:40 PM Task #2892 (Closed): Provide SoBigData colleagues with details for interfacing with LDAP: Andrea Dell'Amico
08:34 PM Task #3479 (Closed): Letsencrypt hook script for openldap: The openldap playbook has been updated. Andrea Dell'Amico
08:00 PM Task #3479 (In Progress): Letsencrypt hook script for openldap: And the ldif that add the certificates to the openldap configuration:
~~~
dn: cn=config
add: olcTLSCACertificate... Andrea Dell'Amico
07:59 PM Task #3479: Letsencrypt hook script for openldap: The hook script:
~~~
#!/bin/bash
. /etc/default/letsencrypt
mkdir -p /etc/pki/openldap
chown openldap:open... Andrea Dell'Amico
07:55 PM Task #3479 (Closed): Letsencrypt hook script for openldap: A script that copies the certificates in a different place with the correct permissions. Andrea Dell'Amico
08:33 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail: I propose to
- @lucio.lelii@isti.cnr.it to report the right rule to write to perform a replace;
- @g.panichi@isti... Pasquale Pagano
04:59 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail: For the sake of completeness, the rule is as follows
~~~
Equals(Soundex($[Text]),Soundex("skj"))
~~~
Please... Leonardo Candela
04:42 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail: Please, share the rule with @lucio.lelii@isti.cnr.it (I'm not allowed to do that).
Re error messages, I see it is ... Leonardo Candela
04:29 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail: In FAO Tuna Atlas, on a file with 'skj', I tried a replace to 'SKJ'
I shared the rule with L.Candela, as Giancarlo... Anton Ellenbroek
03:18 PM Support #3137 (Closed): Tuna Atlas Tabular Data Manager; Rules fail: Because of the lack of further details I'm going to close the ticket. It is almost impossible to figure out what is g... Leonardo Candela
10:14 AM Support #3137 (Feedback): Tuna Atlas Tabular Data Manager; Rules fail: Giancarlo Panichi
07:57 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates: Or, for the letsencrypt acme tool:
~~~
letsencrypt_acme_install: True
letsencrypt_acme_domains:
- '{{ ansible... Andrea Dell'Amico
06:18 PM Task #3475 (Closed): Add 2 OrientDB instances: Luca Frosini
05:08 PM Task #3181: Update RStudio on rstudio.d4science.org: rstudio-dev.d4science.org is now running rstudio-server 0.99 and R 3.2.3 with the same set of R plugins that are curr... Andrea Dell'Amico
03:30 PM Task #3181 (In Progress): Update RStudio on rstudio.d4science.org: Andrea Dell'Amico
04:24 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: @roberto.cirillo@isti.cnr.it please install the spd plugin(s) required on the SPD service node of gCubeApps/EuBrazilO... Massimiliano Assante
04:16 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: Those plugins are not part of the spd bundle. The installation is up to the infrastructure manager depending on the r... Lucio Lelii
03:48 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: doesn't all the plugin jars come with the maven build of SPD? Or you have a specific maven profile for each deploymen... Massimiliano Assante
03:41 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: You need intall the plugin jar in the node and load it in the calsspath (here you can check the component that you ne... Lucio Lelii
03:25 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: Thanks Lucio, now that we know which SPD plugins are necessary we need the documentation to enable these plugins. Massimiliano Assante
03:21 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: What leo wrote is correct, the expected plugin for EUBrazil openBio were GBIF, speciesLink, Catalogue of Life and Bra... Lucio Lelii
02:52 PM Task #3254 (Paused): Fix Notification added items path on Production: We found the way to update in 30 minutes, however we just found out we have no backup for the cluster, cannot proceed... Massimiliano Assante
02:51 PM Support #3234 (Closed): Fix Notification added items path: Massimiliano Assante
02:50 PM Task #3355 (Closed): enable backup for cassandra production cluster: It seems that when we switched to the new cassandra cluster we forgot to enable a backup for cassandra production clu... Massimiliano Assante
02:15 PM Task #3285 (Closed): Provide a portal for /gcube/preprod VO: Massimiliano Assante
10:56 AM Task #3285 (In Progress): Provide a portal for /gcube/preprod VO: Massimiliano Assante
10:40 AM Task #3285 (Closed): Provide a portal for /gcube/preprod VO: A new instance of portal is needed for /gcube/preprod VO Roberto Cirillo
01:35 PM Support #3252 (Closed): Please add me to the svn for the d4science: Andrea Dell'Amico
01:03 PM Incident #3206 (Closed): Tabular Data Manager - Open - Does not show correct list of available tabular resources: Since the error cannot be reproduced I'm going to close the ticket Lucio Lelii
11:32 AM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO: This is needed by AquaMaps, which I guess is in the production env. only. Gianpaolo Coro
11:28 AM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO: The following resource: Database/FishCodesConversion , is not present in /gcube/devsec VO. @gianpaolo.coro@isti.cnr.i... Roberto Cirillo
11:06 AM Task #3267 (In Progress): Add Statistical RuntimeResource to /gcube/preprod VO: Roberto Cirillo
11:31 AM Task #3269 (Closed): Add Gis Resources to /gcube/preprod VO: Roberto Cirillo
11:31 AM Task #3269 (In Progress): Add Gis Resources to /gcube/preprod VO: Roberto Cirillo

Apr 14, 2016

07:32 PM Task #3258: letsencrypt script for haproxy: Added support for the letsencrypt acme client. It has different paths.
Andrea Dell'Amico
07:11 PM Task #3254 (In Progress): Fix Notification added items path on Production: The HL Patch provided by Valentina has been deployed on the 4 production gateways with success. Unfortunately we coul... Massimiliano Assante
07:02 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: And it works. So we can convert to ssl with valid certificates almost all our services.
Andrea Dell'Amico
06:55 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: I successfully tested a manual installation on redmine-d.d4science.org. Now trying via provisioning on ldap-liferay-d... Andrea Dell'Amico
02:24 PM Task #3164 (In Progress): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: There are less intrusive clients, that possibly do not need to run as root. I'm going to try this one: https://github... Andrea Dell'Amico
06:29 PM Incident #3235 (Closed): Upload archive does not expand the archive: The issue has been fixed in HL 2.3 and it will be released in gCube 3.11. You can test it in dev3 portal.
I've trie... Valentina Marioli
03:50 PM Incident #3235: Upload archive does not expand the archive: Valentina is working and performing test on this issue so @leonardo.candela@isti.cnr.it will receive feedback ASAP
I... Francesco Mangiacrapa
04:58 PM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO: I would advice to copy the resources. Creating them from scratch brings high risk of introducing errors and is **very... Gianpaolo Coro
04:55 PM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO: There are a lot of resources that aren't defined in the root-vo (/gcube) but they are only defined in the VO scope (/... Roberto Cirillo
11:27 AM Task #3267 (Closed): Add Statistical RuntimeResource to /gcube/preprod VO: The following resources should be added to /gcube/preprod VO:
~~~
DataStorage/StorageManager VO/VRE StorageManage... Roberto Cirillo
04:49 PM Task #3181: Update RStudio on rstudio.d4science.org: I see #630 more appropriate as parent task for this ticket. If you agree, please update it Gabriele Giammatteo
11:39 AM Task #3269 (Closed): Add Gis Resources to /gcube/preprod VO: The following GIS resources should be added to /gcube/preprod VO
**Service Endpoints**
~~~
Category: Gis - Nam... Roberto Cirillo

Apr 13, 2016

08:03 PM Task #3262 (Closed): Change the ldap authentication for the d4science subversion repository: From the _old_ ldap server to the new. Possible problems that need to be managed:
* Different usernames
* Users t... Andrea Dell'Amico
08:02 PM Task #3261 (Closed): Manage more ldap groups from the portal so that we can setup different roles on various services: Needed right now:
* An admin group for redmine
* The 'infrastructure managers' that is now a manually managed gro... Andrea Dell'Amico
07:55 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates: Inside the ansible playbooks, the following variables need to be defined or set to `True`:
~~~
letsencrypt_instal... Andrea Dell'Amico
07:49 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates: An example (it's the `haproxy` one):
~~~
#!/bin/bash
LE_SERVICES_SCRIPT_DIR=/usr/local/lib/letsencrypt
LE_CER... Andrea Dell'Amico
07:48 PM Task #3257 (In Progress): Create a letsencrypt callback for each service that will serve letsencrypt certificates: The scripts need to be installed in the /usr/local/lib/letsencrypt directory and marked as executable. Andrea Dell'Amico
07:41 PM Task #3257 (Closed): Create a letsencrypt callback for each service that will serve letsencrypt certificates: The letsencrypt scripts take care of the certificates requests and renewal. After a certificate has been renewed, the... Andrea Dell'Amico
07:46 PM Task #3260 (Closed): letsencrypt script for nginx: nginx needs to be reloaded after a certificate renewal.
Andrea Dell'Amico
07:45 PM Task #3259 (Closed): letsencrypt script for apache: apache needs to be reloaded after a certificate renewal. Andrea Dell'Amico
07:45 PM Task #3258 (Closed): letsencrypt script for haproxy: The script has been committed to the ansible haproxy role.
Andrea Dell'Amico
07:44 PM Task #3258 (Closed): letsencrypt script for haproxy: The script needs to create the `/etc/pki/certs/haproxy.pem` file from the fullchain.pem and key.pem, and set the corr... Andrea Dell'Amico
06:16 PM Task #3202: add statistical resources to gcube/preprod VO: The generic resources with secondary type: "StatisticalManagerAlgorithm" have been correctly added to /gcube/preprod VO Roberto Cirillo
04:56 PM Task #3202 (In Progress): add statistical resources to gcube/preprod VO: I'm going to write a java tool for adding a set of resource from a scope to another one Roberto Cirillo
11:55 AM Task #3202 (Paused): add statistical resources to gcube/preprod VO: Roberto Cirillo
05:10 PM Support #3252 (Feedback): Please add me to the svn for the d4science: Andrea Dell'Amico
05:08 PM Support #3252: Please add me to the svn for the d4science: Please follow the email instructions to activate your account. Ignore the certificate security warnings.
Andrea Dell'Amico
05:03 PM Support #3252 (In Progress): Please add me to the svn for the d4science: Andrea Dell'Amico
04:17 PM Support #3252 (Closed): Please add me to the svn for the d4science: Ioannis Karkalakos
05:09 PM Task #3254 (Closed): Fix Notification added items path on Production: We have all ready to proceed with the fix caused by the HL bug about items path. @valentina.marioli@isti.cnr.it provi... Massimiliano Assante
04:58 PM Task #3104 (Closed): Please install a reverse proxy over dev2.d4science.org: Massimiliano Assante
04:57 PM Task #1659 (Paused): Federated and Classic Login cannot "live" together: Massimiliano Assante
04:56 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure: Leo, we should ask @lucio.lelii@isti.cnr.it or @valentina.marioli@isti.cnr.it Massimiliano Assante
04:53 PM Task #2516 (In Progress): Provide RStudio in the e-Infrastructure VREs: Massimiliano Assante
04:43 PM Task #3141 (Feedback): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE: All VMs backup checked, all VMs switched off.
As requested, we will wait few days before remove VM disks Tommaso Piccioli
03:26 PM Task #3141: Dismiss EuBrazilOpenBio VO and SpeciesLab VRE: All the containers have been stopped. I think is better to wait a couple of day before delete completely the Vms. If ... Roberto Cirillo
12:02 PM Task #3141 (In Progress): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE: This is the list of OpenBio VMs:
~~~
node3.p.d4science.research-infrastructures.eu RM, RB
node3.p.d4science.res... Roberto Cirillo
04:17 PM Task #3164 (Feedback): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: Andrea Dell'Amico
04:16 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt: We now have a script to request/renew the certificate, and a cron job that starts the renewal procedure if the certif... Andrea Dell'Amico
03:31 PM Task #3243 (Closed): Remove monitoring checks from openBio VMs: Andrea Dell'Amico
12:26 PM Task #3243 (In Progress): Remove monitoring checks from openBio VMs: Nagios checks removed. The ganglia ones, if any, expire by themselves.
Andrea Dell'Amico
12:13 PM Task #3243 (Closed): Remove monitoring checks from openBio VMs: All VMs belonging to "OpenBio" VO should be dismissed and all related monitoring check should be removed.
This is ... Roberto Cirillo
03:14 PM Incident #3136 (Closed): From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error: The problem is solved, the fix will be released in gCube3.11. Giancarlo Panichi
11:53 AM Incident #3136: From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error: This problem is clear, and is due to the fact that upon back button the server method (in the portlet java) which is ... Massimiliano Assante
03:02 PM Task #3236: TabMan; Sharing something which is not mine: We need to update the share widget @francesco.mangiacrapa@isti.cnr.it, what do you think? Giancarlo Panichi
11:29 AM Task #3236: TabMan; Sharing something which is not mine: I understand the disappointment and I share your view since this was already discussed internally many months ago. Th... Pasquale Pagano
09:23 AM Task #3236 (Closed): TabMan; Sharing something which is not mine: If I open a table, I can click the share button (useful to see who it was shared with)
When I click "OK" or try t... Anton Ellenbroek
01:05 PM Incident #3235: Upload archive does not expand the archive: I upload the files by using the services portal.
The two files are available at the following URIs:
* (small t... Leonardo Candela
11:27 AM Incident #3235: Upload archive does not expand the archive: @leonardo.candela@isti.cnr.it, What is the portal where we should investigate? i-marine or services?
Can you confir... Francesco Mangiacrapa
10:20 AM Incident #3235 (Feedback): Upload archive does not expand the archive: Francesco Mangiacrapa
10:20 AM Incident #3235 (In Progress): Upload archive does not expand the archive: Leonardo Candela wrote:
> I successfully managed to upload twice a tgz file by using the "upload archive" facility y... Francesco Mangiacrapa
12:54 PM Task #3109 (Feedback): VREModeler: nightly restart: The cron job will restart the service at 2 am on Saturdays night. Andrea Dell'Amico
12:51 PM Task #3109 (In Progress): VREModeler: nightly restart: Andrea Dell'Amico
12:34 PM Support #3234: Fix Notification added items path: On dev the fix seems to work Costantino Perciante

Apr 12, 2016

07:18 PM Incident #3136: From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error: this is not possible service side, I will assign this ticket to giancarlo that is the responsible for the portlet. Bu... Lucio Lelii
07:17 PM Incident #3235 (Closed): Upload archive does not expand the archive: I successfully managed to upload twice a tgz file by using the "upload archive" facility yet this does not produce ... Leonardo Candela
07:09 PM Incident #3206: Tabular Data Manager - Open - Does not show correct list of available tabular resources: It seems to be related with a problem we had today in production, We solved it 1 hour ago. Can you retry and let me k... Lucio Lelii
11:55 AM Incident #3206: Tabular Data Manager - Open - Does not show correct list of available tabular resources: And now: "Error retrieving TabularResources: com.sun.xml.internal.ws.client.ClientTransportException: The server sent... Anton Ellenbroek
11:32 AM Incident #3206 (Closed): Tabular Data Manager - Open - Does not show correct list of available tabular resources: The list of Tabular resources availalbe to a user is not always the correct one.
e.g. if I try tabular data lab, ... Anton Ellenbroek
06:54 PM Task #3141: Dismiss EuBrazilOpenBio VO and SpeciesLab VRE: please list the virtual machines to shut-down and then assign the ticket to the @_InfraScience Admin team Pasquale Pagano
03:12 PM Task #3202 (In Progress): add statistical resources to gcube/preprod VO: Roberto Cirillo
10:38 AM Task #3202 (Closed): add statistical resources to gcube/preprod VO: The statistical manager service need a lot of resources for working. All these resources should be added to the /gcub... Roberto Cirillo
02:54 PM Task #2516 (Feedback): Provide RStudio in the e-Infrastructure VREs: the R Studio has been added to stock assessment VRE, see R Studio tab
https://i-marine.d4science.org/group/stockas... Massimiliano Assante
02:40 PM Support #3234: Fix Notification added items path: the notification type containing the wrong path is of type NotificationType.WP_ITEM_NEW Massimiliano Assante
02:37 PM Support #3234 (Closed): Fix Notification added items path: For the move operation the notification related could contain a wrong path to the folder containing the item starting... Massimiliano Assante
10:34 AM Task #3127 (Closed): Switch statistical-manager-service from "Ecosystem" to "preprod": Roberto Cirillo
10:34 AM Task #3127 (In Progress): Switch statistical-manager-service from "Ecosystem" to "preprod": Roberto Cirillo

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