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From Jul 18, 2018 to Aug 16, 2018

Aug 16, 2018

09:20 PM Task #12323 (Closed): Update the oVirt cluster to the latest release
Andrea Dell'Amico
09:20 PM Task #12323: Update the oVirt cluster to the latest release
dlib18x is up again. I didn't really solved the problem, I'm going to investigate it when I have some time to spare. ... Andrea Dell'Amico
08:34 PM Incident #12326 (In Progress): GARR OpenStack dashboard and CT1 regions are unreachable
Andrea Dell'Amico
01:16 PM Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable
I just asked again. Andrea Dell'Amico
11:43 AM Incident #12326 (Closed): GARR OpenStack dashboard and CT1 regions are unreachable

Since, yesterday, all the VMs hosted at GARR CT1 region are not reachable, and so it is the OpenStack management da...
Andrea Dell'Amico
10:36 AM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Dear @pasquale.pagano@isti.cnr.it ,
you are right that the "right-click feature" needs to be updated to support ou...
Matthias Filter

Aug 15, 2018

02:56 PM Task #12323: Update the oVirt cluster to the latest release
dlib18x failed to boot after the upgrade. Tomorrow I'll try to fix the problem from the console. Andrea Dell'Amico

Aug 14, 2018

02:34 PM Task #12323: Update the oVirt cluster to the latest release
dlib19x and dlib17x upgraded Andrea Dell'Amico
01:38 PM Task #12323: Update the oVirt cluster to the latest release
dlib16x upgraded. Andrea Dell'Amico

Aug 13, 2018

09:31 AM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Andrea Dell'Amico wrote:
> I'll start with the knime installation next week.
Hey Andrea,
how is the installa...
Lars Valentin

Aug 12, 2018

07:05 PM Task #12323: Update the oVirt cluster to the latest release
dlib15x upgraded. Andrea Dell'Amico
07:04 PM Task #12323 (In Progress): Update the oVirt cluster to the latest release
I added a wiki page that documents the upgrade steps. here: https://support.d4science.org/projects/aginfraplut/wiki/U... Andrea Dell'Amico
07:03 PM Task #12323 (Closed): Update the oVirt cluster to the latest release
It should solve a big memory leak in the glusterfs service Andrea Dell'Amico

Aug 08, 2018

02:51 PM VM Creation #11954: VM to host the GRSF-services-updater service
Luca Frosini wrote:
> Normally it should be added in distro directory as described here:
>
> https://wiki.gcube-s...
Andrea Dell'Amico

Aug 07, 2018

08:11 PM VM Creation #11954: VM to host the GRSF-services-updater service
Normally it should be added in distro directory as described here:
https://wiki.gcube-system.org/gcube/SmartGears
...
Luca Frosini
12:51 PM VM Creation #11954 (Feedback): VM to host the GRSF-services-updater service
The services are available at updater.grsf.d4science.org/{grsf-api,grsf-services-updater} on both http and https (no ... Andrea Dell'Amico
06:39 PM Task #12321: Install a new backup server (with backuppc SW)
I added nagios monitoring and also the prometheus node exporter. The prometheus exporter starts correctly on dlib4bac... Andrea Dell'Amico
12:06 AM Task #12321 (Closed): Install a new backup server (with backuppc SW)
New server is
dlib4backup.isti.cnr.it (alias dlib4backup.sub.research-infrastructures.eu)
https://dlib4backup.ist...
Tommaso Piccioli
12:00 AM Task #12321 (Closed): Install a new backup server (with backuppc SW)
Tommaso Piccioli

Aug 06, 2018

06:15 PM Task #12307 (Closed): Backup the container volumes
Done Tommaso Piccioli

Aug 03, 2018

06:53 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
I'll start with the knime installation next week.
Andrea Dell'Amico
05:22 PM Support #12308 (Closed): Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect
Lino solved the issue for the people who reported the issue.
A generic solution to be applied to remaining users in ...
Alessia Bardi
04:29 PM Support #12314 (Closed): couchbase7 nagios alert
Couchbase seems to be stable at the moment.
We will take care of this issue and these informations if there will be ...
Tommaso Piccioli
10:48 AM Support #12314: couchbase7 nagios alert
In attachment some logs extracted from geoserver-1-p-spatial.d4science.org. Roberto Cirillo
10:46 AM Support #12314 (Closed): couchbase7 nagios alert
Nagios alert on couchbase7 since this night. Please could you check?
I've found an huge number of accounting logs on...
Roberto Cirillo
12:50 PM Task #12315 (Rejected): geoserver1-p-spatial.d4science.org logs everything ad DEBUG level
Ah sorry, I looked at the logs this morning and I forgot to open the ticket until some minutes ago. In the meantime y... Andrea Dell'Amico
12:39 PM Task #12315: geoserver1-p-spatial.d4science.org logs everything ad DEBUG level
@andrea.dellamico@isti.cnr.it where do you see the logs at DEBUG level? the container has been restarted today at 10... Roberto Cirillo
12:27 PM Task #12315 (Rejected): geoserver1-p-spatial.d4science.org logs everything ad DEBUG level
It seems that it runs the old broken logback configuration. Andrea Dell'Amico
11:57 AM Task #12312 (Closed): Increase RAM on geoserver.d4science.org
OK, so we'll handle the other ones on request, when needed. Andrea Dell'Amico
11:47 AM Task #12312: Increase RAM on geoserver.d4science.org
The 4 geoservers are used to equally distribute the publication of new geospatial datasets. Then, at access time clea... Pasquale Pagano
11:45 AM Task #12312: Increase RAM on geoserver.d4science.org
The policy we endorsed with these geoserver instances is to distribute the number of layers they host, so it is possi... Fabio Sinibaldi
11:42 AM Task #12312: Increase RAM on geoserver.d4science.org
Andrea Dell'Amico wrote:
> On this one only? we also have geoserver2/3/4 with the same hardware resources. The reque...
Roberto Cirillo
11:37 AM Task #12312 (Feedback): Increase RAM on geoserver.d4science.org
The heap size was incremented too. Andrea Dell'Amico
11:14 AM Task #12312: Increase RAM on geoserver.d4science.org
The VM is now running with 5GB of RAM. Andrea Dell'Amico
11:12 AM Task #12312 (In Progress): Increase RAM on geoserver.d4science.org
On this one only? we also have geoserver2/3/4 with the same hardware resources. The requests are not evenly distribut... Andrea Dell'Amico
10:18 AM Task #12312 (Closed): Increase RAM on geoserver.d4science.org
It's needed to add 2 GB of RAM to the following VM
~~~
geoserver.d4science.org
~~~
in order to increase the h...
Roberto Cirillo
10:42 AM Incident #12313 (Closed): geoserver1-p-spatial.d4science.org: disk full for accounting logs
The log level was set to the unknown level FATAL. Now I've replaced FATAL to ERROR and the situation seems to be back... Roberto Cirillo
10:35 AM Incident #12313 (In Progress): geoserver1-p-spatial.d4science.org: disk full for accounting logs
Roberto Cirillo
10:34 AM Incident #12313 (Closed): geoserver1-p-spatial.d4science.org: disk full for accounting logs
Only today 1484 file of accounting logs and 1577 file of ghn.log have been written with log level set to DEBUG.
I'...
Roberto Cirillo
10:08 AM Incident #12311 (Closed): geoserver.d4science.org: java.lang.OutOfMemoryError: Java heap space
The container has been restarted. The RAM size should be increased. Roberto Cirillo
10:05 AM Incident #12311 (In Progress): geoserver.d4science.org: java.lang.OutOfMemoryError: Java heap space
Roberto Cirillo
10:05 AM Incident #12311 (Closed): geoserver.d4science.org: java.lang.OutOfMemoryError: Java heap space
Roberto Cirillo

Aug 02, 2018

05:40 PM Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect
Did you keep track of the old and new usernames?
For how many users the username was changed?
Alessia Bardi
02:38 PM Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect
@pasquale.pagano@isti.cnr.it I changed their usernames some days ago, to the ones they have on the old ldap servers. ... Andrea Dell'Amico
02:33 PM Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect
please @francesco.mangiacrapa@isti.cnr.it and @lucio.lelii@isti.cnr.it try to understand why those users are not able... Pasquale Pagano
01:41 PM Support #12308 (Closed): Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect
Eloy Rodrigues (eloy@sdum.uminho.pt) and José Carvalho (jcarvalho@sdum.uminho.pt) can't access the workspace folders ... Alessia Bardi
05:38 PM Task #12310 (In Progress): is-exporter.d4science.org contains wrong plugin
is-exporter.d4science.org contains accounting-aggregator plugin instead of the is-exporter plugin.
I stopped the c...
Luca Frosini
05:31 PM Task #12310 (Closed): is-exporter.d4science.org contains wrong plugin
Luca Frosini
04:20 PM VM Creation #11954: VM to host the GRSF-services-updater service
I've just deployed grsf-services-updater on http://maven.research-infrastructures.eu/nexus/content/repositories/gcube... Yannis Marketakis
01:23 PM VM Creation #11954: VM to host the GRSF-services-updater service
Do we have an artifact yet? I cannot find anything in nexus. Andrea Dell'Amico
02:51 PM Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents
I see that now the resource is correctly published on FARM VO and the portlet works on CollabResearch VRE. Roberto Cirillo
02:47 PM Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents
OK, thanks. Andrea Dell'Amico
02:45 PM Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents
There was a problem with the registry service of FARM VO during the restart from last night. Now the problem is solve... Roberto Cirillo
02:34 PM Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents
It also happens for /d4science.research-infrastructures.eu/FARM/D4STeam, but I don't know why. @roberto.cirillo@isti.... Andrea Dell'Amico
01:55 PM Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents
I'm not able to use sharelatex.
At https://services.d4science.org/group/collabresearch/sharelatex I get:
No gCo...
Luca Frosini
01:04 PM Incident #12303 (Closed): The production Sharelatex instance is not using a permanent storage for the users documents
There's no way to add a volume to an existing container. As we are running a specific version with lots of local cust... Andrea Dell'Amico
01:01 PM Incident #12303 (In Progress): The production Sharelatex instance is not using a permanent storage for the users documents
Andrea Dell'Amico
01:15 PM Task #12307 (Closed): Backup the container volumes

On sharelatex.d4science.org: /srv/sharelatex_data/
On docker-exec1.d4science.org: /var/lib/docker/volumes/
Andrea Dell'Amico
11:29 AM Task #12247 (Closed): Please upgrade collector-sa-d4s.smart-applications.area.pi.cnr.it
The node has been upgraded Roberto Cirillo
10:55 AM Task #12247 (In Progress): Please upgrade collector-sa-d4s.smart-applications.area.pi.cnr.it
This is the resource-manager service, it's not smartgears but gCore. gCore based services are still run with Java7. I... Roberto Cirillo

Aug 01, 2018

04:39 PM Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents
I'm going to stop the service, copy the user data outside the container, than restart the container with the external... Andrea Dell'Amico
04:38 PM Incident #12303 (Closed): The production Sharelatex instance is not using a permanent storage for the users documents
There was a mistake in the ansible task that launches the container instance: the syntax for the volume configuration... Andrea Dell'Amico
04:30 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Lars Valentin wrote:
> Dear Andrea,
>
> in the future we want to allow the user to run there own R models in our...
Andrea Dell'Amico
01:05 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Dear Andrea,
in the future we want to allow the user to run there own R models in our service (workflow). The iss...
Lars Valentin
02:57 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Dear Lars,
> In order to test the new application for our use case, I need to wait until our KNIME ticket is solve...
Pasquale Pagano
12:13 PM Task #12162 (Closed): Critical memory alert on GNs
geonetwork-aquacultureatlasgeneration.d4science.org restarted with the new heap size. Roberto Cirillo
12:05 PM Task #12162 (In Progress): Critical memory alert on GNs
Now we have the same problem on geonetwork-aquacultureatlasgeneration.d4science.org.
I'm going to decrease the heap ...
Roberto Cirillo

Jul 31, 2018

06:04 PM Task #12276 (Closed): To much log data on ckan-bb1.d4science.org
the container has been restarted. I'm going to close this ticket. Roberto Cirillo
02:07 PM Task #12276: To much log data on ckan-bb1.d4science.org
I've just changed the logback configuration on ckan-bb1. Now it's needed a container restart, it will be done this ev... Roberto Cirillo
12:51 PM Task #12276: To much log data on ckan-bb1.d4science.org
Yes, it's smartgears. Andrea Dell'Amico
12:45 PM Task #12276: To much log data on ckan-bb1.d4science.org
accounting.log and ghn.log are not logs belonging to CKAN. Are they of Smartgears?
CKAN's logs are at INFO level a...
Francesco Mangiacrapa
12:23 PM Task #12276 (Closed): To much log data on ckan-bb1.d4science.org
Please, reduce the logging data on ckan-bb1.
At the moment TRACE information are logged (duplicated) in both the acc...
Tommaso Piccioli
04:46 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Dear Pasquale, Dear Francesco,
In order to test the new application for our use case, I need to wait until our KNI...
Lars Valentin
04:13 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Dear Andrea,
as promised I provide you some of my ANSIBLE code as inspiration for you.
Here a short list of ...
Lars Valentin
11:05 AM Task #8040 (Closed): Impossible to produce DWCA for a number of Families
Pasquale Pagano
11:05 AM Task #7900 (Closed): Generating Darwin Core Archives via SPD
Pasquale Pagano

Jul 30, 2018

08:15 PM Task #9826 (Closed): issue sharelatex (can't compile a whole report)
It's a resources problem, that document requires more resources that we have available. Andrea Dell'Amico
05:46 PM Task #9826: issue sharelatex (can't compile a whole report)
@gianpaolo.coro@isti.cnr.it can you check this ticket please Luca Frosini
06:00 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Lars Valentin wrote:
> What I would like to ask is, how does the user then is informed in that "right click featur...
Pasquale Pagano
03:53 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Hi Francesco,
thanks for clarifying, that I just have to integrate a workflow which is defined to have a file as i...
Lars Valentin
12:41 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Lars Valentin wrote:
> Francesco Mangiacrapa wrote:
> > HI Lars,
> >
> > for your purpose the facility 'Execute ...
Francesco Mangiacrapa
05:39 PM Task #12262 (Closed): Wrong Rprofile settings for the dev workspace
I also added a default mirror site for CRAN. Andrea Dell'Amico
04:00 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Dear Andrea,
> Tuesday at 12:00? Is it OK? I'll send you a google hangouts link 10 minutes before the start.
So...
Lars Valentin
02:53 PM Task #12270 (Closed): Shutdown resource-registry until the next upgrade
Luca Frosini
02:03 PM Task #12270 (Closed): Shutdown resource-registry until the next upgrade
Luca Frosini
02:53 PM Task #12271 (Closed): Stop resource-regsitry containers
Luca Frosini
02:05 PM Task #12271 (Closed): Stop resource-regsitry containers
Actually, there are 2 instances:
resource-registry1.d4science.org
resource-registry2.d4science.org
Luca Frosini
02:45 PM Task #12272 (Closed): Deactive nagios monitoring and load-balancer on resource regsitry
Disabled both the nagios checks and the load balancer frontend and backend. Andrea Dell'Amico
02:30 PM Task #12272 (In Progress): Deactive nagios monitoring and load-balancer on resource regsitry
Andrea Dell'Amico
02:07 PM Task #12272 (Closed): Deactive nagios monitoring and load-balancer on resource regsitry
Involved instances are:
resource-registry1.d4science.org
resource-registry2.d4science.org
Luca Frosini
02:05 PM Task #12263: Restart Accounting Aggregator
Luca Frosini wrote:
> I restarted the resource-registry which is the old version (the new one cannot be used because...
Roberto Cirillo
11:58 AM Task #12263: Restart Accounting Aggregator
I restarted the resource-registry which is the old version (the new one cannot be used because it impact on all the c... Luca Frosini
11:15 AM Task #12263: Restart Accounting Aggregator
Luca Frosini wrote:
> the host was down again because orientdb refuses the connections.
>
> Can you please check...
Andrea Dell'Amico
10:57 AM Task #12263: Restart Accounting Aggregator
The container is restart every midnight because in the past it leaks memory. Every smart-executor try to connect to o... Luca Frosini
10:54 AM Task #12263: Restart Accounting Aggregator
the host was down again because orientdb refuses the connections.
Can you please check monitoring.research-infras...
Luca Frosini
10:32 AM Task #12263: Restart Accounting Aggregator
Andrea Dell'Amico wrote:
> Luca Frosini wrote:
>
> > Moreover I found that there are tentative connections from 1...
Luca Frosini
12:07 PM VM Creation #11954: VM to host the GRSF-services-updater service
Thank you @gabriele.giammatteo@eng.it Yannis Marketakis
11:54 AM VM Creation #11954: VM to host the GRSF-services-updater service
I also granted permissions to create and edit new components in the data-catalogue subsystem. I tried to add also per... Gabriele Giammatteo
11:16 AM VM Creation #11954: VM to host the GRSF-services-updater service
Thanks @gabriele.giammatteo@eng.it . I confirm I can edit the configuration.
@luca.frosini@isti.cnr.it could you ...
Yannis Marketakis
10:06 AM VM Creation #11954: VM to host the GRSF-services-updater service
Hi @marketak@ics.forth.gr, I granted you permission to edit and build the component. Let me know if it works and if y... Gabriele Giammatteo

Jul 28, 2018

02:10 PM Task #12263: Restart Accounting Aggregator
Luca Frosini wrote:
> Moreover I found that there are tentative connections from 146.48.122.24 (postgresql-srv-dev...
Andrea Dell'Amico

Jul 27, 2018

08:40 PM Task #12258: Remove old buckets
There are still the checks on accounting_service Tommaso Piccioli
07:13 PM Task #12258 (Closed): Remove old buckets
Nagios checks on accounting_storage removed Tommaso Piccioli
05:27 PM Task #12258: Remove old buckets
@tommaso.piccioli@isti.cnr.it I deleted some buckets. Can you please remove the nagios checks on the following bucke... Luca Frosini
03:12 PM Task #12258 (Paused): Remove old buckets
'accounting_service' buckets will be removed at the end of September if no other records will be found. I set the due... Luca Frosini
03:10 PM Task #12258 (In Progress): Remove old buckets
Luca Frosini
03:09 PM Task #12258: Remove old buckets
All the following buckets has been successfully removed:
accounting_storage
accounting_portlet
accounting_job
acc...
Luca Frosini
03:05 PM Task #12258 (Closed): Remove old buckets
The following buckets are empty since months.
accounting_storage
accounting_portlet
accounting_job
accounting_tas...
Luca Frosini
07:10 PM Task #12263 (Closed): Restart Accounting Aggregator
I successfully restarted orientdb and accounting-aggregator.d4science.org smartgears container.
Please note th...
Luca Frosini
07:05 PM Task #12263: Restart Accounting Aggregator
The smart-executor did not started correctly as happened for social-indexer-plugin see #12203
orientdb01-d4s denye...
Luca Frosini
06:54 PM Task #12263 (Closed): Restart Accounting Aggregator
Luca Frosini
06:23 PM Task #12257 (Closed): Restart couchbase cluster
All 8 nodes updated and restarted. Tommaso Piccioli
03:25 PM Task #12257: Restart couchbase cluster
I will do a package upgrade during this restart. Tommaso Piccioli
03:20 PM Task #12257: Restart couchbase cluster
couchbase03.d4science.org has been successfully restarted and it is up again in the cluster. Luca Frosini
03:16 PM Task #12257: Restart couchbase cluster
couchbase03.d4science.org is going to be restarted
It was running for 160 days
Luca Frosini
03:06 PM Task #12257: Restart couchbase cluster
Restarted nodes are:
couchbase02.d4science.org
couchbase04.d4science.org
couchbase07.d4science.org
couchbase0...
Luca Frosini
03:00 PM Task #12257 (Closed): Restart couchbase cluster
Luca Frosini
05:58 PM Task #12262 (Closed): Wrong Rprofile settings for the dev workspace
I've just found this piece of code into the Rprofile that we distribute:
~~~
getCredentials<-function(){
machi...
Andrea Dell'Amico
05:46 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Lars Valentin wrote:
> Andrea Dell'Amico wrote:
> > Lars Valentin wrote:
> >
> > >
> > > In the past, we have ...
Andrea Dell'Amico
05:02 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Andrea Dell'Amico wrote:
> Lars Valentin wrote:
>
> >
> > In the past, we have offered to help you with maintai...
Lars Valentin
04:47 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
Lars Valentin wrote:
>
> In the past, we have offered to help you with maintaining your KNIME installation. I su...
Andrea Dell'Amico
04:27 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Andrea Dell'Amico wrote:
> @lars.valentin@bfr.bund.de I see that I can download a bundle that contains all the kni...
Lars Valentin
04:09 PM Support #12249 (In Progress): Need installed KNIME 3.6 and R 3.4 including the listed plugins
About the R packages: the missing ones from your list were
~~~
miniCRAN
msm
Rserve
~~~
and they will be ava...
Andrea Dell'Amico
04:03 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins
@lars.valentin@bfr.bund.de I see that I can download a bundle that contains all the knime extensions, but not the com... Andrea Dell'Amico
05:19 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Francesco Mangiacrapa wrote:
> HI Lars,
>
> for your purpose the facility 'Execute DM Task" is available from you...
Lars Valentin
12:46 PM Support #12250 (Feedback): so called "right click feature" to send model file from folder directly to the dataminer
HI Lars,
for your purpose the facility 'Execute DM Task" is available from your Workspace. You can call it by open...
Francesco Mangiacrapa
04:37 PM VM Creation #11954: VM to host the GRSF-services-updater service
Thanks @luca.frosini@isti.cnr.it for the prompt reaction. Unfortunately, I cannot edit it.
@mariaantonietta.dig...
Yannis Marketakis
04:30 PM VM Creation #11954: VM to host the GRSF-services-updater service
I created the component 'grsf-services-updater' under 'data-catalogue' subsystem.
Let us know if you have the righ...
Luca Frosini
04:24 PM VM Creation #11954: VM to host the GRSF-services-updater service
Thanks Luca for your reply.
I can create the configuration in ETICS.
Firstly, I have to see where I should put i...
Yannis Marketakis
10:46 AM VM Creation #11954: VM to host the GRSF-services-updater service
Hi @marketak@ics.forth.gr
the system engineer need the artefact to deploy. I mean the war. Our provisioning frame...
Luca Frosini
08:37 AM VM Creation #11954: VM to host the GRSF-services-updater service
Andrea Dell'Amico wrote:
> @marketak@ics.forth.gr is there a build for the two applications? Did you connect the sou...
Yannis Marketakis
12:36 PM Task #12090 (Feedback): Remove Edison VO scope from infrastructure-monitor
Massimiliano Assante
12:25 PM Task #12090 (In Progress): Remove Edison VO scope from infrastructure-monitor
Massimiliano Assante
11:43 AM Support #12254 (In Progress): geoserver-french-tunaatlas: strange accounting logs and high load
There should be only one FallbackMonitor thread per scope. the log evidenced that there are many.
This thread does n...
Luca Frosini
10:14 AM Support #12254 (Closed): geoserver-french-tunaatlas: strange accounting logs and high load
I see a lot of the following accounting logs on ghn.log. The load is very high (27) and no recent calls have been reg... Roberto Cirillo
10:41 AM Task #12226 (Closed): Nagios: remove replicaset checks from mongo-p-vol.d4science.org
Roberto Cirillo
10:38 AM Task #12226: Nagios: remove replicaset checks from mongo-p-vol.d4science.org
As explained here #8788 the check is working now but when the authenication will be enabled with the new SCRAM-SHA1 m... Roberto Cirillo
09:58 AM Task #12162 (Closed): Critical memory alert on GNs
geonetwork-iotcss3.d4science.org has been restarted with the new heap setting. Roberto Cirillo
09:53 AM Task #12162 (In Progress): Critical memory alert on GNs
After 15 days we have again the same problem on geonetwork-iotcss3.d4science.org.
The load is very low now and no re...
Roberto Cirillo

Jul 26, 2018

06:53 PM Task #11976: New load balancer for the tagme service
As it seems that we solved the problem with the x509 certificates, we can use services-lb.d4science.org. The rate lim... Andrea Dell'Amico
06:00 PM VRE #12251 (Released): FIT4RRI VRE
Massimiliano Assante
06:00 PM VRE #12251 (Available): FIT4RRI VRE
Everything is set, https://services.d4science.org/group/fit4rri/fit4rri Massimiliano Assante
05:54 PM VRE #12251 (In Progress): FIT4RRI VRE
Massimiliano Assante
04:59 PM VRE #12251 (Released): FIT4RRI VRE
VRE Name: FIT4RRI
VRE Description: Virtual Research Environment to support the FIT4RRI project activity – Fosterin...
Massimiliano Assante
05:58 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer
Dear Lars, my colleague Francesco has developed this feature and will point you to the released functionality and rep... Gianpaolo Coro
04:16 PM Support #12250 (Closed): so called "right click feature" to send model file from folder directly to the dataminer
Dear @gianpaolo.coro@isti.cnr.it ,
as mentioned in the main ticket, we want to use your new so called "right-click...
Lars Valentin
05:41 PM Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28
And now the number is 29 as I just deployed a new VRE named FIT4RRI Massimiliano Assante
05:22 PM Task #12252 (Closed): VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28
The VRE list returned from the modeller here: https://services.d4science.org/group/farm/vre-manager contains 12 VREs ... Massimiliano Assante
04:58 PM Task #12227: Encoding issue on Dataminer proto 5
Gianpaolo Coro wrote:
> Hi, the tomcat had been restarted. The fact that the test works enforces my guess that there...
Andrea Dell'Amico
04:41 PM Task #12227: Encoding issue on Dataminer proto 5
Hi, the tomcat had been restarted. The fact that the test works enforces my guess that there is something at tomcat l... Gianpaolo Coro
03:10 PM Task #12227: Encoding issue on Dataminer proto 5
@gianpaolo.coro@isti.cnr.it can you run some different test? I cannot explain the behaviour, the errors start on July... Andrea Dell'Amico
03:01 PM Task #12227: Encoding issue on Dataminer proto 5
Run more than once, it never failed. Andrea Dell'Amico
02:53 PM Task #12227: Encoding issue on Dataminer proto 5
The test you posted does not fail. The xml response is:
~~~
<wps:ExecuteResponse xmlns:wps="http://www.opengis....
Andrea Dell'Amico
04:00 PM Support #12249 (Closed): Need installed KNIME 3.6 and R 3.4 including the listed plugins
Dear @gianpaolo.coro@isti.cnr.it,
as requested by @pasquale.pagano@isti.cnr.it, I opened a sub-ticket to better se...
Lars Valentin
03:45 PM VM Creation #11954 (In Progress): VM to host the GRSF-services-updater service
updater.grsf.d4science.org is running, to be deployed Tommaso Piccioli
03:34 PM VM Creation #11954: VM to host the GRSF-services-updater service
* /d4science.research-infrastructures.eu/FARM/GRSF_Admin
* /d4science.research-infrastructures.eu/FARM/GRSF
Massimiliano Assante
03:23 PM VM Creation #11954: VM to host the GRSF-services-updater service
@marketak@ics.forth.gr is there a build for the two applications? Did you connect the source to our CI service?
Andrea Dell'Amico
03:20 PM VM Creation #11954: VM to host the GRSF-services-updater service
@luca.frosini@isti.cnr.it I need the smartgears scope here. Andrea Dell'Amico
03:26 PM Task #12247 (Closed): Please upgrade collector-sa-d4s.smart-applications.area.pi.cnr.it
Looking couchbase buckets I noticed two records in the old bucket accounting_service accounted for the host
http:/...
Luca Frosini
03:10 PM Task #451 (Rejected): New VO creation for preproduction
Pasquale Pagano
03:08 PM Task #1802 (Rejected): Provide 2 new VMs for hosting Cassandra in pre production environment
Pasquale Pagano
03:07 PM Task #1802 (In Progress): Provide 2 new VMs for hosting Cassandra in pre production environment
Pasquale Pagano
03:08 PM Task #1801 (Rejected): Provide 3 new VMs for hosting CouchDB in pre production environment
Pasquale Pagano
03:07 PM Task #1801 (In Progress): Provide 3 new VMs for hosting CouchDB in pre production environment
Pasquale Pagano
03:08 PM Task #1790 (Rejected): Provide 2 new MongoDB nodes v 3.0 for preproduction environment
Pasquale Pagano
03:07 PM Task #1790 (In Progress): Provide 2 new MongoDB nodes v 3.0 for preproduction environment
Pasquale Pagano

Jul 25, 2018

08:29 PM Task #11980 (Closed): Add the involvement filter plugin to the d4science redmine instance
Done on both dev and production instances. Andrea Dell'Amico
08:21 PM Task #11980 (In Progress): Add the involvement filter plugin to the d4science redmine instance
Andrea Dell'Amico
08:08 PM Task #12235: New support.d4science.org static html page
I changed the nagios check, it now points to the `/login` URL.
Andrea Dell'Amico
08:04 PM Task #12235 (Closed): New support.d4science.org static html page
The new redmine home page is in place. Andrea Dell'Amico
06:54 PM Task #12235 (In Progress): New support.d4science.org static html page
I'm working on it right now. Expect some downtime. Andrea Dell'Amico
05:35 PM Task #12235: New support.d4science.org static html page
Please, can we proceed with this activity? If not possible, we have to change all the records published in the catalo... Pasquale Pagano
09:57 AM Task #12235 (Closed): New support.d4science.org static html page
The folder zipped here http://data.d4science.org/cWlwS2VvVmh3LzkwQm81eFEySDVPNURIeGdjT3RRalZHbWJQNStIS0N6Yz0 contains... Massimiliano Assante
06:06 PM Task #12227: Encoding issue on Dataminer proto 5
Gianpaolo Coro wrote:
> Yes, the issue is weird but this morning I have verified it is just on that machine. The pro...
Andrea Dell'Amico
02:26 PM Task #12241 (Rejected): Setup New gateway open-science.it
We need to setup a new gateway on liferay cluster and that would respond to https://open-science.it
Please start b...
Massimiliano Assante
09:48 AM Task #12226 (In Progress): Nagios: remove replicaset checks from mongo-p-vol.d4science.org
Roberto Cirillo

Jul 24, 2018

11:48 PM Task #12227: Encoding issue on Dataminer proto 5
Yes, the issue is weird but this morning I have verified it is just on that machine. The process that highlighted the... Gianpaolo Coro
04:25 PM Task #12227 (In Progress): Encoding issue on Dataminer proto 5
I just compared the relevant parts of dataminer4-proto and dataminer5-proto without founding any difference:
* env...
Andrea Dell'Amico
12:10 PM Task #12227: Encoding issue on Dataminer proto 5
For the time being, we are going to stop dataminer5-proto in order to make the NLP Hub work. Gianpaolo Coro
11:48 AM Task #12227 (Closed): Encoding issue on Dataminer proto 5
I have a difficult issue on one of the prototype Dataminers for which I need help:
There are several algorithms o...
Gianpaolo Coro
06:25 PM Task #12226: Nagios: remove replicaset checks from mongo-p-vol.d4science.org
Specific nagios group created to check standalone mongodb implementation.
Waiting for a user "nagios" to run the aut...
Tommaso Piccioli
10:10 AM Task #12226 (Closed): Nagios: remove replicaset checks from mongo-p-vol.d4science.org
mongo-p-vol.d4science.org VM hosts a standalone mongodb instance.
The replicaset nagios check are not compatible w...
Roberto Cirillo
03:10 PM Task #12058 (Closed): IS-Collector: Restart all the smartgears services with too many open connections to IS-Collector
Roberto Cirillo
11:09 AM Task #12008 (Rejected): grsf-publisher deployed on gcube-staging repo doesn't work
Luca Frosini
11:02 AM Incident #12203: News Feed search function returns result up to mid June 2018
I confirm that now the search works with the latest posts of July as well. Massimiliano Assante
10:32 AM Incident #12203 (Closed): News Feed search function returns result up to mid June 2018
The smart-executor was not restarted correctly because it was not able to connect to orientdb (orientdb01-d4s.d4scien... Luca Frosini
09:56 AM Incident #12203: News Feed search function returns result up to mid June 2018
any update? Roberto Cirillo
11:00 AM Incident #12063 (Closed): Storage Hub Recent Documents do not get updated in SoBigData.eu VRE
Yes, the problem is fixed with the rollout of the gCube 4.12 release (although it takes up to 10 seconds to get the r... Massimiliano Assante
10:14 AM Incident #12063: Storage Hub Recent Documents do not get updated in SoBigData.eu VRE
Is this problem solved? @massimiliano.assante@isti.cnr.it @lucio.lelii@isti.cnr.it Roberto Cirillo
09:47 AM Incident #12178 (Closed): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value
Roberto Cirillo

Jul 23, 2018

06:52 PM Task #12110 (Closed): DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere
Done. Andrea Dell'Amico
06:48 PM Task #12110: DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere
The upgrade is running. Andrea Dell'Amico
06:42 PM Task #12110 (In Progress): DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere
Andrea Dell'Amico
04:37 PM Task #12183 (Closed): Please add nagios check to monitor the correct functioning of social networking service
They are working. Andrea Dell'Amico
04:23 PM Task #12183 (Feedback): Please add nagios check to monitor the correct functioning of social networking service
I also added the system checks, they were missing too. Andrea Dell'Amico
04:01 PM Task #12183 (In Progress): Please add nagios check to monitor the correct functioning of social networking service
Andrea Dell'Amico
04:20 PM Upgrade #12222 (Completed): D4Science Gateway 2nd upgrade to gCube 4.12.0
Massimiliano Assante
04:14 PM Upgrade #12222: D4Science Gateway 2nd upgrade to gCube 4.12.0
@dkatris@di.uoa.gr the upgrade of the visualise portlets has been completed Massimiliano Assante
03:34 PM Upgrade #12222 (In Progress): D4Science Gateway 2nd upgrade to gCube 4.12.0
Massimiliano Assante
11:47 AM Upgrade #12222 (Completed): D4Science Gateway 2nd upgrade to gCube 4.12.0
The upgrade does not require downtime and it will deploy the updated versions of the following components:
* portl...
Massimiliano Assante

Jul 20, 2018

02:20 PM Incident #12214 (Closed): DataMiners cannot interact with the Storage System
Yes, it seems that everything works correctly. I close this ticket. Giancarlo Panichi
12:54 PM Incident #12214 (Feedback): DataMiners cannot interact with the Storage System
The disk space on the volatile mongo instance has been incremented and the server restarted. Does it solve the datami... Andrea Dell'Amico
12:53 PM Incident #12214 (In Progress): DataMiners cannot interact with the Storage System
Andrea Dell'Amico
12:29 PM Incident #12214: DataMiners cannot interact with the Storage System
I see that the mongo instance on that server is down.
So: we do not have monitoring of those instances, it seems....
Andrea Dell'Amico
12:20 PM Incident #12214 (Closed): DataMiners cannot interact with the Storage System
No DM is currently working in any VRE because they get errors when interacting with the Storage system. The issue is ... Gianpaolo Coro
02:16 PM Incident #12213 (Closed): Algorithms not installed on dataminer1-proto
Giancarlo Panichi
02:16 PM Incident #12213 (Resolved): Algorithms not installed on dataminer1-proto
Giancarlo Panichi
01:12 PM Incident #12213: Algorithms not installed on dataminer1-proto
Yes, I was working on it. Now, MongoDB has also started up and it seems that everything works correctly. Giancarlo Panichi
12:21 PM Incident #12213 (In Progress): Algorithms not installed on dataminer1-proto
I just removed the list of installed algorithms but I see that the cron job execution has been commented out.
I also...
Andrea Dell'Amico
12:13 PM Incident #12213 (Closed): Algorithms not installed on dataminer1-proto
Algorithms are not installed on this machine, like the last part of the installation did not run after the latest upg... Gianpaolo Coro
12:50 PM Task #12215 (Closed): Increase disk space on mongo-p-vol.d4science.org
mongo-p-vol restarted with 3 GB of memory and 200 GB of storage Tommaso Piccioli
12:38 PM Task #12215 (Closed): Increase disk space on mongo-p-vol.d4science.org
The mongo-p-vol.d4science.org stopped itself because there's enough space in `/data`
Also, for some reason that I...
Andrea Dell'Amico

Jul 19, 2018

09:38 PM Incident #12203: News Feed search function returns result up to mid June 2018
I' ve restart the resource registry instances during gCube 4.12 release, I'm not sure if that's related. However this... Roberto Cirillo
12:46 PM Incident #12203: News Feed search function returns result up to mid June 2018
Nope, still nothing after Mid-End of June (the latest hit i could get is of June 25th) Massimiliano Assante
12:40 PM Incident #12203: News Feed search function returns result up to mid June 2018
This service has not been upgraded during gCube 4.12. I've tried to restart it. Please, could you check if it works n... Roberto Cirillo
11:52 AM Incident #12203 (Closed): News Feed search function returns result up to mid June 2018
It seems that News Feed search function returns result up to mid February 2018, after that no results are returned. I... Massimiliano Assante
05:00 PM Task #11831: Explore new letsencrypt clients to add wildcard certificates support
We have a wildcard certificate, at last Andrea Dell'Amico
04:52 PM VRE #12171 (Released): Create a VRE for ICDI
Leonardo Candela
04:51 PM VRE #12171 (Available): Create a VRE for ICDI
The VRE is available at https://services.d4science.org/group/icdi Leonardo Candela
04:35 PM VRE #12171 (In Progress): Create a VRE for ICDI
Leonardo Candela
03:59 PM VRE #12171 (Planned): Create a VRE for ICDI
Leonardo Candela
03:58 PM VRE #9232 (Released): Create a VRE for EOSCpilot TextCrowd use case
Leonardo Candela

Jul 18, 2018

06:07 PM Incident #12178: MongoOperationManager - primary db not discovered. Backend will be instantiated with default value
The patch is being distributed on the gateways Massimiliano Assante
10:32 AM Incident #12178 (Feedback): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value
Roberto Cirillo
10:01 AM Incident #12178 (In Progress): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value
I see that the problem is still there. I'm going to investigate, anyway this is just a log issue not a real problem. Roberto Cirillo
04:53 PM Support #12179 (Closed): Aquamaps still run with Java7
OK, thanks Fabio. I'm going to close this ticket. Roberto Cirillo
04:39 PM Support #12179 (Feedback): Aquamaps still run with Java7
No problem has been found while testing the portlets from BiodiversityLab and AquaMaps VREs.
I suggest to keep the c...
Fabio Sinibaldi
03:51 PM Incident #12176 (Closed): garr site is not reachable
The problem has been solved by the GARR technical support. It seems that it was caused by a problem on the Neutron ga... Andrea Dell'Amico
03:46 PM Task #12183: Please add nagios check to monitor the correct functioning of social networking service
Is it possible to have a *machine* token? we should not rely on personal tokens for the monitoring checks. Andrea Dell'Amico
12:50 PM Task #12183 (Closed): Please add nagios check to monitor the correct functioning of social networking service
Here's 2 REST Calls that should be performed every 10 minutes, each of the calls need a user token of one VRE of your... Massimiliano Assante
03:15 PM Task #12173 (Closed): Suspend all the letsencrypt certificates renewals for 15 days
All the hosts on the d4science.org domain have been reconfigured. The situation can be monitored here: https://crt.sh... Andrea Dell'Amico
03:14 PM Incident #12182 (Closed): Social Networking service not working
The service seem to work now. Thanks Massimiliano Assante
12:51 PM Incident #12182: Social Networking service not working
I see a Too Many Open File exception. I'm going to investigate. Roberto Cirillo
12:50 PM Incident #12182 (In Progress): Social Networking service not working
Roberto Cirillo
12:29 PM Incident #12182 (Closed): Social Networking service not working
Any call to the social networking service generate t
HTTP Status 500 - Cannot call sendError() after the response ...
Massimiliano Assante
 

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