Activity

From Nov 04, 2018 to Dec 03, 2018

Dec 03, 2018

06:01 PM D4Science Infrastructure Incident #12965: Error creating shared folder in workspace: The path in my workspace is:
/Workspace/FAO Missions/TT 4 – 7th June 2018 Chaguanas - Trinidad – R Training course
... Emmanuel Blondel
03:03 PM D4Science Infrastructure Incident #12965: Error creating shared folder in workspace: Hi Emmanuel, I tried the same thing and it worked, can you please tell me the absolute path of the folder? Lucio Lelii
12:26 PM D4Science Infrastructure Incident #12965: Error creating shared folder in workspace: i'm the owner of the folder Emmanuel Blondel
12:24 PM D4Science Infrastructure Incident #12965: Error creating shared folder in workspace: https://services.d4science.org/group/d4science-services-gateway/workspace Emmanuel Blondel
12:04 PM D4Science Infrastructure Incident #12965: Error creating shared folder in workspace: Hi @emmanuel.blondel1@gmail.com, we need a bit of context.
Which gateway are you using?
Is the folder a subfolder... Pasquale Pagano
11:36 AM D4Science Infrastructure Incident #12965 (Closed): Error creating shared folder in workspace: I've tried to share a workspace folder with colleagues (Y. Laurent, M. Taconet), and I get an error (see attached scr... Emmanuel Blondel
04:41 PM StocksAndFisheriesKB Task #12861 (In Progress): Purge old records of the public GRSF Catalogue: New records have been published in the GRSF VRE, the entry page is not showing "Browse by Organisations" and "Browse ... Aureliano Gentile
02:36 PM StocksAndFisheriesKB Task #12858 (Closed): Purge old records from public GRSF VRE: Yannis Marketakis
02:35 PM StocksAndFisheriesKB Task #12857 (Closed): Bulk approval of (valid) GRSF records: We have already approved and published the records in the public GRSF VRE.
You can see the results in https://servic... Yannis Marketakis
01:03 PM StocksAndFisheriesKB Task #12857: Bulk approval of (valid) GRSF records: Dear FORTH colleagues, do you envisage a new data harvest before approving? At least from FIRMS where in the meantime... Aureliano Gentile
02:16 PM ISTI Open Access Feature #11601: Migrate the OpenPortal services to production machines: I think that 3 machines are necessary for the production deployment:
1. dnet.openportal.isti.cnr.it (java 8 + tomc... Michele Artini
12:32 PM D4Science Infrastructure Incident #12922 (Closed): Workspace get link not working: Francesco Mangiacrapa
12:32 PM D4Science Infrastructure Incident #12923 (Closed): Workspace public folders are shown as regular shared folders: Francesco Mangiacrapa
09:19 AM D4Science Infrastructure Task #12964: logback does not change its configuration at runtime: It sounds really good. Luca Frosini

Nov 30, 2018

09:28 PM D4Science Infrastructure Task #12964 (Closed): logback does not change its configuration at runtime: I added `scanPeriod="60 seconds"` to the logback template in the smartgears playbook.
The change must be provisione... Andrea Dell'Amico
09:25 PM D4Science Infrastructure Task #12964 (In Progress): logback does not change its configuration at runtime: It's a bug, introduced in version 1.1.7 and fixed in 1.1.13. The bug tracking is here: https://jira.qos.ch/browse/LOG... Andrea Dell'Amico
09:22 PM D4Science Infrastructure Task #12964 (Closed): logback does not change its configuration at runtime: It should reload its configuration ad fixed intervals, but it does not.
Andrea Dell'Amico
09:05 PM D4Science Infrastructure VM Creation #11771 (Feedback): Please create a VM having access to prod authorization service: The service has been deployed. I see no errors in the tomcat logs, can you check if it's working?
Andrea Dell'Amico
08:55 PM D4Science Infrastructure Task #12963 (Closed): Routinely restart the ldap service on the replicas: Cron job installed. Andrea Dell'Amico
08:50 PM D4Science Infrastructure Task #12963 (In Progress): Routinely restart the ldap service on the replicas: I'm adding the task that install a cron job to restart the service, at a different hour on the replicas with respect ... Andrea Dell'Amico
06:52 PM D4Science Infrastructure Task #12963 (Closed): Routinely restart the ldap service on the replicas: After some days of uptime, the nagios check starts failing even if the service seems to respond to the local client... Andrea Dell'Amico
06:43 PM D4Science Infrastructure Task #12827 (Closed): Configure CKAN to store .cache files (that are session info) in memory: All the servers have been reconfigured. Andrea Dell'Amico
01:12 PM StocksAndFisheriesKB Task #12857 (In Progress): Bulk approval of (valid) GRSF records: Yannis Marketakis

Nov 29, 2018

06:38 PM D4Science Infrastructure VM Creation #11771 (In Progress): Please create a VM having access to prod authorization service: Hostname and Ip address are going to be accounting-harvester.d4science.org 146.48.122.7. Andrea Dell'Amico
04:09 PM D4Science Infrastructure Task #12949 (Closed): Provide a cronjob for avoiding ldap problem on rstudio instances: Cron job installed on the production rstudio servers. It runs once a minute.
Andrea Dell'Amico
01:22 PM D4Science Infrastructure Task #11162 (Closed): both d4science portal cluster nodes accessibile directly via http: Andrea Dell'Amico
01:21 PM D4Science Infrastructure Task #6232 (Closed): Enable Infrastructure Gateway cluster communication behind firewall: Done. Andrea Dell'Amico
12:51 PM D4Science Infrastructure Incident #12956 (Rejected): Workspace move operation, workspace explorer lists folders as empty while browsing: This behaviour is not an incident. During moving operation the Workspace Explorer widget shows only folders (not file... Francesco Mangiacrapa
12:24 PM D4Science Infrastructure Incident #12956: Workspace move operation, workspace explorer lists folders as empty while browsing: Similar error on RAKIP_portal:
~~~
2018-11-29 06:16:36,108 INFO o.g.p.w.w.s.WorkspaceExplorerServiceImpl [ajp-... Giancarlo Panichi
10:12 AM D4Science Infrastructure Incident #12956 (Rejected): Workspace move operation, workspace explorer lists folders as empty while browsing: When performing a move and browsing using the workspace explorer it sometimes says the folder is empty (but its not).... Massimiliano Assante
12:31 PM D4Science Infrastructure VRE #12959 (Available): EOSC Pilot VisualMedia VRE: Massimiliano Assante
11:20 AM D4Science Infrastructure VRE #12959 (Released): EOSC Pilot VisualMedia VRE: The EOSC VisualMedia VRE will be accessible via the D4Science Gateway (https://services.d4science.org/explore) under ... Massimiliano Assante
09:26 AM StocksAndFisheriesKB Bug #12906 (Closed): Update "problematic" records in the GRSF admin catalog: The following records have been updated:
* 701 legacy Stock records (from FIRMS)
* 2928 GRSF Stock records Yannis Marketakis
07:39 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: @pasquale.pagano@isti.cnr.it
Thanks a lot for the detailed explanation!
In the past I always understood that t... Lars Valentin

Nov 28, 2018

03:39 PM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service: Yes, please Luca Frosini
01:23 PM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service: Can we start the activity now?
Andrea Dell'Amico
02:15 PM D4Science Infrastructure Support #12950 (Closed): Issue with access in SDI_lab VRE RStudio: Roberto Cirillo
12:43 PM D4Science Infrastructure Support #12950 (Resolved): Issue with access in SDI_lab VRE RStudio: Thanks, user can access his Rstudio now. Emmanuel Blondel
10:14 AM D4Science Infrastructure Support #12950 (Feedback): Issue with access in SDI_lab VRE RStudio: Please could you retry now? I've reset @mathias.rouan@univ-brest.fr local state. Roberto Cirillo
10:04 AM D4Science Infrastructure Support #12950 (In Progress): Issue with access in SDI_lab VRE RStudio: Roberto Cirillo
01:18 PM D4Science Infrastructure Support #12636 (Closed): Redmine: preventing email addresses to be shown in public projects: Andrea Dell'Amico
01:18 PM D4Science Infrastructure Task #12387 (Closed): Increment the prometheus data retention, right now it's too limited.: I just incremented it to one year, I guess we are going to need more disk space in the near future.
Andrea Dell'Amico
01:14 PM D4Science Infrastructure Support #12864 (Closed): Nagios down: Andrea Dell'Amico

Nov 27, 2018

10:25 PM D4Science Infrastructure Support #12950 (Closed): Issue with access in SDI_lab VRE RStudio: Hello, I'm writing this ticket on behalf of a SDI_Lab VRE user @mathias.rouan@univ-brest.fr in, who is facing issue w... Emmanuel Blondel
05:23 PM D4Science Infrastructure Task #6232: Enable Infrastructure Gateway cluster communication behind firewall: I'm working on this one again. To accomodate the needs of the liferay cluster communications I had to rewrite some pa... Andrea Dell'Amico
04:41 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: I will add a bit of technical information since I believe it is not yet clear.
D4Science operated by CNR supports... Pasquale Pagano
02:38 PM D4Science Infrastructure Task #12806 (Closed): Testing the new settings of the RAKIP infrastructure: No need to continue keeping this ticket open, there was a misunderstanding and that's all. Leonardo Candela
01:12 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Lars Valentin wrote:
> Why do you say I am fighting? I was kindly asking why we have this gap in what CNR said befor... Panagiotis Zervas
01:07 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Why do you say I am fighting? I was kindly asking why we have this gap in what CNR said before and does say now.
A... Lars Valentin
12:57 PM D4Science Infrastructure Task #12806 (Feedback): Testing the new settings of the RAKIP infrastructure: Hey @lars.valentin@bfr.bund.de
yes there is a big misunderstanding here (and not only here I would say). The over... Leonardo Candela
12:46 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: I add examples of what CNR said in the past:
https://support.d4science.org/issues/12614#note-5
https://suppo... Lars Valentin
12:42 PM D4Science Infrastructure Task #12806 (In Progress): Testing the new settings of the RAKIP infrastructure: Leonardo Candela wrote:
> @lars.valentin@bfr.bund.de thanks for the explanation. What was puzzling me was the commen... Lars Valentin
12:28 PM D4Science Infrastructure Task #12806 (Closed): Testing the new settings of the RAKIP infrastructure: Leonardo Candela
12:28 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: @lars.valentin@bfr.bund.de thanks for the explanation. What was puzzling me was the comment "multicore use does **now... Leonardo Candela
04:40 PM D4Science Infrastructure Task #12949 (Closed): Provide a cronjob for avoiding ldap problem on rstudio instances: Sometimes we have ldap problems on rstudio instances maybe due to a ldap timeout.
It's needed to provide a cronjob i... Roberto Cirillo
03:59 PM D4Science Infrastructure Incident #12944 (Closed): Error Connecting on rstudio2.d4science.org: Roberto Cirillo
03:10 PM D4Science Infrastructure Incident #12944 (In Progress): Error Connecting on rstudio2.d4science.org: I've tried to reset your user's state but nothing change. I see a strange error on system logs, I'm going to investig... Roberto Cirillo
12:48 PM D4Science Infrastructure Incident #12944: Error Connecting on rstudio2.d4science.org: AnalyticsLab Massimiliano Assante
12:15 PM D4Science Infrastructure Incident #12944 (Feedback): Error Connecting on rstudio2.d4science.org: Roberto Cirillo
12:11 PM D4Science Infrastructure Incident #12944 (In Progress): Error Connecting on rstudio2.d4science.org: Please could you provide the VRE you are using? Roberto Cirillo
11:53 AM D4Science Infrastructure Incident #12944 (Closed): Error Connecting on rstudio2.d4science.org: When connecting on https://rstudio2.d4science.org/r-connector/gcube/service/connect?gcube-token=0deee49b-****** i get... Massimiliano Assante
02:58 PM D4Science Infrastructure VRE #12946 (In Progress): D4Research/FAIR_DM VRE Removal: Massimiliano Assante
02:58 PM D4Science Infrastructure VRE #12946 (Removed): D4Research/FAIR_DM VRE Removal: Massimiliano Assante
02:36 PM D4Science Infrastructure VRE #12913 (Removed): gCubeApps/ICOS_ETC VRE Removal: The VRE has been disposed successfully. Massimiliano Assante
02:32 PM D4Science Infrastructure VRE #12913: gCubeApps/ICOS_ETC VRE Removal: The undeployment has been triggered Massimiliano Assante
02:29 PM D4Science Infrastructure VRE #12913 (In Progress): gCubeApps/ICOS_ETC VRE Removal: Massimiliano Assante
02:28 PM D4Science Infrastructure VRE #12913 (Planned): gCubeApps/ICOS_ETC VRE Removal: Massimiliano Assante
02:27 PM D4Science Infrastructure VRE #12848 (Removed): D4Research/BOBLME_HilsaAWG Removal: Massimiliano Assante
02:27 PM D4Science Infrastructure VRE #12848 (In Progress): D4Research/BOBLME_HilsaAWG Removal: Massimiliano Assante
12:30 PM D4Science Infrastructure Task #12614 (Closed): Need server with joblength 1 to use all 16 cores and a cue system per server.: I'm going to close the ticket. According to #12806 the RAKIP VRE cluster is supporting the expected case. Leonardo Candela

Nov 26, 2018

06:01 PM D4Science Infrastructure Task #12827: Configure CKAN to store .cache files (that are session info) in memory: @francesco.mangiacrapa@isti.cnr.it will decide when reconfigure the remaining CKAN instances. Andrea Dell'Amico
05:26 PM D4Science Infrastructure Task #12827: Configure CKAN to store .cache files (that are session info) in memory: Reconfiguration of the sobigdata ckan servers is ongoing. It will take some time, because the old sessions data is be... Andrea Dell'Amico
01:01 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: "Sharks - Global" (http://data.d4science.org/ctlg/GRSF_Admin/41cdffcb-fff2-3aaa-ab38-1d23a2b651c4) is marine resource... Aureliano Gentile
12:19 PM StocksAndFisheriesKB Bug #12906 (In Progress): Update "problematic" records in the GRSF admin catalog: I would prefer an automatic way of identifying them (so that we are sure that future updates are consistent). I under... Yannis Marketakis
10:37 AM D4Science Infrastructure Upgrade #12936 (Completed): Infra-gateways second update to gCube 4.13.0: Massimiliano Assante
10:07 AM D4Science Infrastructure Upgrade #12936 (In Progress): Infra-gateways second update to gCube 4.13.0: Massimiliano Assante
10:07 AM D4Science Infrastructure Upgrade #12936 (Completed): Infra-gateways second update to gCube 4.13.0: This update features improvements and bug fixes on:
* Workspace portlet (26 Nov 2018)
* PerformFISH KPI Applicat... Massimiliano Assante
10:03 AM D4Science Infrastructure Task #6309 (Closed): D4Science Infrastructure migration to Java 8: Massimiliano Assante
10:03 AM D4Science Infrastructure Task #6309 (In Progress): D4Science Infrastructure migration to Java 8: the ticket is old and will be closed. the migration was performed since a while ... Massimiliano Assante
10:02 AM D4Science Infrastructure Task #6312 (Closed): Java 8 unexpected behaviours should be communicated by the gCube VRE Social Facility: Massimiliano Assante

Nov 23, 2018

10:09 PM D4Science Infrastructure Task #12806 (Feedback): Testing the new settings of the RAKIP infrastructure: Hi Leonardo,
as a developer of services, I have to prove that the outcame of my work is behaving as expected. Ther... Lars Valentin
04:03 PM D4Science Infrastructure Task #12806 (In Progress): Testing the new settings of the RAKIP infrastructure: Lars Valentin wrote:
> Hi @g.panichi@isti.cnr.it ,
>
> thanks a lot for helping me. Looks like the multicore use ... Leonardo Candela
03:29 PM D4Science Infrastructure Task #12806 (Closed): Testing the new settings of the RAKIP infrastructure: Hi @g.panichi@isti.cnr.it ,
thanks a lot for helping me. Looks like the multicore use does now behave as expected ... Lars Valentin
03:18 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Sorry @lars.valentin@bfr.bund.de , I had not noticed the amount of files produced.
Well, then the execution of your ... Giancarlo Panichi
03:08 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Hi @lars.valentin@bfr.bund.de , I tried your algorithm Dm15coresuse with the default parameter, and is actually using... Giancarlo Panichi
03:00 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Hi @g.panichi@isti.cnr.it
looks like my previous message got lost while uploading.
Thank you for taking over! ... Lars Valentin
02:18 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Hi @lars.valentin@bfr.bund.de , please could you give me the Equivalent Get Request that is given by the DataMiner wh... Giancarlo Panichi
11:48 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: I'm passing this activity to @g.panichi@isti.cnr.it, he knows dataminer much better than me. Andrea Dell'Amico
07:15 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: > They work properly, and they are related to the servers you are using.
>
> I cannot spend time staring at a bu... Lars Valentin
05:29 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: I updated the list of FIRMS, please find attached excel file.
The presence of Text in the "State and trend of Marine... Aureliano Gentile
05:07 PM D4Science Infrastructure Task #12935: sdi-service: upgrade commons-codec library: Updated remote build against gcube 4.13 has been performed. Report available here : http://etics.esl.eng.it/etics-rep... Fabio Sinibaldi
04:56 PM D4Science Infrastructure Task #12935 (In Progress): sdi-service: upgrade commons-codec library: Roberto Cirillo
04:55 PM D4Science Infrastructure Task #12935 (Closed): sdi-service: upgrade commons-codec library: It's needed to upgrade the commons-codec library from 1.2 to 1.8 on sdi.d4science.org.
Roberto Cirillo
12:22 PM D4Science Infrastructure Task #12827: Configure CKAN to store .cache files (that are session info) in memory: I see that the sessions directory under /tmp is empty and I see CKAN sessions into the memcache data, so I guess the ... Andrea Dell'Amico
11:49 AM D4Science Infrastructure Task #12827: Configure CKAN to store .cache files (that are session info) in memory: Hi @andrea.dellamico@isti.cnr.it,
I just performed some tests in dev and the catalogue ckan-d seems to work fine.... Francesco Mangiacrapa
11:18 AM D4Science Infrastructure Incident #12923 (Feedback): Workspace public folders are shown as regular shared folders: The fix has been released on preoprod Francesco Mangiacrapa
11:17 AM D4Science Infrastructure Incident #12922 (Feedback): Workspace get link not working: The issue has been fixed and the patched Workspace deployed on preprod. Francesco Mangiacrapa

Nov 22, 2018

06:39 PM D4Science Infrastructure Task #12927: Thredds WMS AquaMaps configuration: The archive has been stored in Workspace :
* path : VRE Folders/gCube/Configuration files/THREDDS 4.6/customPalettes... Fabio Sinibaldi
05:03 PM D4Science Infrastructure Task #8935 (Closed): Delete Statistical Service from the VRE Modeler resource in all VOs: Statistical service removed as reported here: #12606 Roberto Cirillo
05:03 PM D4Science Infrastructure Task #8935 (In Progress): Delete Statistical Service from the VRE Modeler resource in all VOs: Roberto Cirillo
04:56 PM D4Science Infrastructure Task #12425 (Closed): Enable TLS/SSL on the mongodb clusters: Upgrade done. Roberto Cirillo
03:47 PM D4Science Infrastructure Task #12742 (Closed): DataMiner - Support Python 3.6: The DMPoolManager was released in gCube 4.13.
Now, it is possible to create algorithms for Python 3.6 specifically t... Giancarlo Panichi
03:37 PM D4Science Infrastructure Task #12789 (Closed): DMPoolManger - Support Python 3.6: The component has been released in gCube 4.13 see ticket #12440 Giancarlo Panichi
02:25 PM StocksAndFisheriesKB Feature #12278: Complete Citation development: I just noticed this citation and it says "FAO 2018" https://bluebridge.d4science.org/group/grsf_admin/data-catalogue?... Aureliano Gentile
02:23 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: Sure. Attached you will find the corresponding titles Yannis Marketakis
01:55 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: Thanks, I'll review. Actually with the title next to the URL it would be much easier for me to spot which are assessm... Aureliano Gentile
12:29 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: Attached you will find the list of stocks records that have state and trend info and do not have time-series info.
... Yannis Marketakis
11:44 AM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: One clarification: if the record has status trend indicators then it is an Assessment Unit by default. These status i... Aureliano Gentile
11:25 AM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: Thank you for the answer. So I will update the type of the record. Would you like to do it for all the records that f... Yannis Marketakis
11:20 AM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: Thanks, I confirm the overall requirement https://support.d4science.org/projects/stocksandfisherieskb/wiki/GRSF_datab... Aureliano Gentile
11:05 AM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: @aureliano.gentile@fao.org As regards the record http://data.d4science.org/ctlg/GRSF_Admin/ee1d7967-6da2-3d8a-88d5-c... Yannis Marketakis
01:22 PM D4Science Infrastructure Task #11977 (Closed): Make the tagme service more reliable.: Andrea Dell'Amico
12:59 PM D4Science Infrastructure Task #11977: Make the tagme service more reliable.: The load balancer is already configured to use both tagme1 and tagme2 as tagme backends. tagme2 will be in use as soo... Andrea Dell'Amico
01:20 PM D4Science Infrastructure VM Creation #12930 (Closed): New TAGME instance at GARR-PA1: The VM has been provisioned and it is active. Andrea Dell'Amico
12:52 PM D4Science Infrastructure VM Creation #12930 (In Progress): New TAGME instance at GARR-PA1: hostname is tagme2.garr.d4science.org. The provisioning is running. Andrea Dell'Amico
12:50 PM D4Science Infrastructure VM Creation #12930 (Closed): New TAGME instance at GARR-PA1: So that we run two identical instances. Andrea Dell'Amico
12:28 PM D4Science Infrastructure Task #11976 (Closed): New load balancer for the tagme service: Done. Andrea Dell'Amico
11:35 AM D4Science Infrastructure Upgrade #12738 (Completed): D4Science Infrastructure Upgrade to gCube 4.13.0: Roberto Cirillo
11:06 AM StocksAndFisheriesKB Task #12856: Verification of GRSF merging process: Thank you @emmanuel.blondel1@gmail.com .
I will invoke this in the merging process and let you know if we face any p... Yannis Marketakis
10:59 AM StocksAndFisheriesKB Bug #12419 (Closed): Fishing Pressure time series is missing in several records: Yannis Marketakis
10:54 AM StocksAndFisheriesKB Bug #12419: Fishing Pressure time series is missing in several records: The missing time-series have been added into GRSF KB (aprox. 400 were missing).
As a proof of concept we have update... Yannis Marketakis
10:58 AM D4Science Infrastructure Incident #12923 (In Progress): Workspace public folders are shown as regular shared folders: Francesco Mangiacrapa
10:33 AM D4Science Infrastructure Upgrade #12772 (Completed): D4Science Preprod Gateway upgrade to gCube 4.13.0: Massimiliano Assante
10:00 AM D4Science Infrastructure Upgrade #12772: D4Science Preprod Gateway upgrade to gCube 4.13.0: can this ticket be closed? Roberto Cirillo
10:30 AM D4Science Infrastructure Upgrade #12773 (Completed): D4Science Gateway upgrade to gCube 4.13.0: Massimiliano Assante
10:30 AM D4Science Infrastructure Upgrade #12773 (In Progress): D4Science Gateway upgrade to gCube 4.13.0: Massimiliano Assante
10:00 AM D4Science Infrastructure Upgrade #12773: D4Science Gateway upgrade to gCube 4.13.0: Can this ticket be closed? Roberto Cirillo

Nov 21, 2018

07:06 PM D4Science Infrastructure Task #12927 (Closed): Thredds WMS AquaMaps configuration: We need to modify provisioning tasks in order to satisfy some AquaMaps custom WMS configuration. The following operat... Fabio Sinibaldi
07:04 PM D4Science Infrastructure Task #11976: New load balancer for the tagme service: Tomorrow I'll change the DNS entry. Andrea Dell'Amico
07:03 PM D4Science Infrastructure Task #11976: New load balancer for the tagme service: Without rate limiting. I inserted the above URLs inside the haproxy configuration as a reference, but I would not act... Andrea Dell'Amico
01:43 PM D4Science Infrastructure Task #11976 (In Progress): New load balancer for the tagme service: Andrea Dell'Amico
07:04 PM D4Science Infrastructure VM Creation #11975 (Closed): New TAGME instance at GARR: Andrea Dell'Amico
01:42 PM D4Science Infrastructure VM Creation #11975 (Feedback): New TAGME instance at GARR: Andrea Dell'Amico
12:29 AM D4Science Infrastructure VM Creation #11975: New TAGME instance at GARR: The tagme instance is working, it seems: I succesfully got results using the nagios URLs checks.
We can do some more... Andrea Dell'Amico
06:39 PM StocksAndFisheriesKB Task #12856: Verification of GRSF merging process: Dear @marketak@ics.forth.gr for spatial, see https://support.d4science.org/projects/stocksandfisherieskb/wiki/18-11-1... Emmanuel Blondel
06:21 PM D4Science Infrastructure Incident #12925: geojsonio R package is not installed on all R instances: Great, thanks a lot, it works now. Emmanuel Blondel
05:41 PM D4Science Infrastructure Incident #12925 (Closed): geojsonio R package is not installed on all R instances: The additional repository has been added, and the `geojsonio` reinstalled everywhere.
Andrea Dell'Amico
04:25 PM D4Science Infrastructure Incident #12925: geojsonio R package is not installed on all R instances: The latest version of the package depends on a development library that's not part of the system distribution. I'm ad... Andrea Dell'Amico
03:38 PM D4Science Infrastructure Incident #12925: geojsonio R package is not installed on all R instances: It is true it seems that after the last update the synchronization of the R packages does not work on some machines. ... Giancarlo Panichi
03:08 PM D4Science Infrastructure Incident #12925: geojsonio R package is not installed on all R instances: indeed it should, but apparently it is not on all instances. The log extract was picked up from Dataminer. Emmanuel Blondel
03:05 PM D4Science Infrastructure Incident #12925 (In Progress): geojsonio R package is not installed on all R instances: Ok I do a check, however this package R should already be installed. Giancarlo Panichi
02:51 PM D4Science Infrastructure Incident #12925 (Closed): geojsonio R package is not installed on all R instances: Running the GRSF_admin algorithm BBoxunion #12901, the process fails sometimes reporting this log:
``
Loading req... Emmanuel Blondel
04:25 PM D4Science Infrastructure Task #12921 (Closed): RStudio - Does not work correctly on some nodes: OK. The state has been cleaned properly. I'm going to close this ticket. Roberto Cirillo
04:09 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: Ok, now it works on ip-90-147-167-3.ct1.garrservices.it for me. Giancarlo Panichi
04:02 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: Now the scopes are ok. Please @g.panichi@isti.cnr.it Could you repeat the test on ip-90-147-167-3.ct1.garrservices.it? Roberto Cirillo
03:53 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: I just run the playbook successfully on all the GARR rstudio servers, this way:
~~~
./run.sh rstudio.yml -i inven... Andrea Dell'Amico
03:42 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: It cannot be a ssh problem. I'm able to access in ssh as root and as gcube but when I run the playbook, I've that err... Roberto Cirillo
03:35 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: It seems something transient, I can access and I see you have a shell on that VM. Andrea Dell'Amico
03:31 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: Not so easy, I've the following error when run the playbook:
~~~
fatal: [ip-90-147-167-3.ct1.garrservices.it]: UN... Roberto Cirillo
03:29 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: Fine by me. To cleanup the duplicate scopes entries, you can run the playbook using the token and disabiling the merg... Andrea Dell'Amico
03:21 PM D4Science Infrastructure Task #12921 (In Progress): RStudio - Does not work correctly on some nodes: I'm going to run the playbook first on ip-90-147-167-3 if all will be successful, I'm going to run it on every garr i... Roberto Cirillo
02:31 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: There are two problem on garr vms:
The first one is the state, verified on ip-90-147-167-3;
The second one is the ... Roberto Cirillo
01:01 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: The playbook run with the same parameters everywhere, I don't really know why some scopes are discarded. Isn't there ... Andrea Dell'Amico
12:50 PM D4Science Infrastructure Task #12921: RStudio - Does not work correctly on some nodes: The problem here seems to be the same verified yesterday on some dataminer instances @garr . The call is rejected bec... Roberto Cirillo
12:16 PM D4Science Infrastructure Task #12921 (Closed): RStudio - Does not work correctly on some nodes: RStudio does not work correctly on some nodes of the GARR:
~~~
http://ip-90-147-167-3.ct1.garrservices.it/r-conne... Giancarlo Panichi
03:41 PM D4Science Infrastructure Incident #12926 (Closed): https://tunaatlas.d4science.org/ is broken (503 Service Unavailable): It's not a valid URL and it never was. The valid ones are:
https://tunaatlas.d4science.org/geoserver
https://tuna... Andrea Dell'Amico
03:08 PM D4Science Infrastructure Incident #12926 (Closed): https://tunaatlas.d4science.org/ is broken (503 Service Unavailable): @fabio.sinibaldi@isti.cnr.it may have more information about this service. Massimiliano Assante
03:11 PM D4Science Infrastructure Incident #12922 (In Progress): Workspace get link not working: Francesco Mangiacrapa
12:28 PM D4Science Infrastructure Incident #12922 (Closed): Workspace get link not working: Massimiliano Assante
03:01 PM D4Science Infrastructure Support #12901 (Closed): Impossible to publish a Dataminer algorithm: There was simply a configuration problem due most likely to the last update of the infrastructure.
However, in your ... Giancarlo Panichi
02:48 PM D4Science Infrastructure Support #12901: Impossible to publish a Dataminer algorithm: OK, can you please explain what was the problem? because so far I never been able to publish an algorithm alone, each... Emmanuel Blondel
11:52 AM D4Science Infrastructure Support #12901: Impossible to publish a Dataminer algorithm: Hi @emmanuel.blondel1@gmail.com , the problem has been solved, now your algorithm is published correctly:
* https:... Giancarlo Panichi
01:43 PM D4Science Infrastructure Task #11977 (In Progress): Make the tagme service more reliable.: Andrea Dell'Amico
01:28 PM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Lars Valentin wrote:
>
> Unfortunately, I still have no feedback at all by the links you provided me.
>
> I ne... Andrea Dell'Amico
07:07 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Hey @andrea.dellamico@isti.cnr.it ,
the new FSK version was installed fine and is running.
Unfortunately, I st... Lars Valentin
12:48 PM D4Science Infrastructure Incident #12923 (Closed): Workspace public folders are shown as regular shared folders: In the previous version the public folders were displayed in Blue (see attached image) now they are displayed (wrong... Massimiliano Assante
11:50 AM StocksAndFisheriesKB Bug #12420 (Closed): Narrative text is messed up when in multiple xml nodes: Yannis Marketakis
11:38 AM StocksAndFisheriesKB Bug #12420: Narrative text is messed up when in multiple xml nodes: Thanks for your reply @francesco.mangiacrapa@isti.cnr.it .
So, I will replace ';' with whitespace. Yannis Marketakis

Nov 20, 2018

07:46 PM D4Science Infrastructure Support #12901: Impossible to publish a Dataminer algorithm: For escaping double quotes, SAI doesn't allow it: ``Error Default: Attention character " is not allowed``, although m... Emmanuel Blondel
07:38 PM D4Science Infrastructure Support #12901: Impossible to publish a Dataminer algorithm: With single quote, i could save/publish the algorithm (although i'm not guaranteed that the business logic is working... Emmanuel Blondel
11:45 AM D4Science Infrastructure Support #12901 (Feedback): Impossible to publish a Dataminer algorithm: Hi @emmanuel.blondel1@gmail.com, the problem is that you are using double quotes in the declaration of default values... Giancarlo Panichi
07:44 PM D4Science Infrastructure Task #12827: Configure CKAN to store .cache files (that are session info) in memory: Functionality active in dev. The variable
~~~
ckan_memcache_sessions: True
~~~
must be created under group_va... Andrea Dell'Amico
06:59 PM D4Science Infrastructure Task #12827 (In Progress): Configure CKAN to store .cache files (that are session info) in memory: Going to reconfigure the dev instance.
Andrea Dell'Amico
06:36 PM D4Science Infrastructure VM Creation #11975 (In Progress): New TAGME instance at GARR: VM at GARR-CT1 is up as tagme1.garr.d4science.org.
I'm collecting the tagme war files and the local data so that we... Andrea Dell'Amico
05:54 PM D4Science Infrastructure Incident #12915 (Closed): Random authorization error when invoking DM: Giancarlo Panichi
05:54 PM D4Science Infrastructure Incident #12915 (Resolved): Random authorization error when invoking DM: Giancarlo Panichi
05:45 PM D4Science Infrastructure Incident #12915 (In Progress): Random authorization error when invoking DM: @roberto.cirillo@isti.cnr.it has canceled the status of the services and now these machines are back to work properly. Giancarlo Panichi
05:29 PM D4Science Infrastructure Incident #12915: Random authorization error when invoking DM: I did some tests and the machines are these:
~~~
http://dm-192-168-100-3.garr.d4science.org/
http://dm-192-168-1... Giancarlo Panichi
04:55 PM D4Science Infrastructure Incident #12915 (Closed): Random authorization error when invoking DM: Randomly, DataMiner cannot be contacted because it reports an authorization error, which prevents the service to be i... Gianpaolo Coro
05:41 PM D4Science Infrastructure Incident #12912 (Closed): Issue when downloading file from the DM DataSpace portlet: This problem was due to the firewall that did not allow the ssl communications.
Now everything works correctly.
So ... Giancarlo Panichi
12:01 PM D4Science Infrastructure Incident #12912 (Closed): Issue when downloading file from the DM DataSpace portlet: The Download button of the DM DataSpace does not work. It produces an error like:
~~~
javax.servlet.ServletExcept... Gianpaolo Coro
04:49 PM D4Science Infrastructure Upgrade #12738 (In Progress): D4Science Infrastructure Upgrade to gCube 4.13.0: Roberto Cirillo
04:49 PM D4Science Infrastructure Upgrade #12738 (Planned): D4Science Infrastructure Upgrade to gCube 4.13.0: Roberto Cirillo
04:47 PM StocksAndFisheriesKB Bug #12420: Narrative text is messed up when in multiple xml nodes: It is (wrongly) correct, I would say ;-)
Anyway, so the best would be to add simply a space.
With thanks Aureliano Gentile
04:44 PM StocksAndFisheriesKB Bug #12420: Narrative text is messed up when in multiple xml nodes: Yannis Marketakis wrote:
> I think that we cannot use HTML formatting tags (i.e. ` , , `, etc.) for the pro... Francesco Mangiacrapa
03:44 PM StocksAndFisheriesKB Bug #12420 (Feedback): Narrative text is messed up when in multiple xml nodes: I think that we cannot use HTML formatting tags (i.e. ` , , `, etc.) for the properties of the catalog. @fra... Yannis Marketakis
03:18 PM StocksAndFisheriesKB Bug #12420: Narrative text is messed up when in multiple xml nodes: Thanks a lot!
Actually multiple text nodes are generated by the FIRMS Word-to-XML converter tool for handling differ... Aureliano Gentile
01:58 PM StocksAndFisheriesKB Bug #12420 (Closed): Narrative text is messed up when in multiple xml nodes: The issue has been resolved. The narratives for the fields scientific_advice and state_and_trend are concatenated whi... Yannis Marketakis
12:34 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: Practically, if we update a record it will have the same effect with republishing it.
As regards your comment about... Yannis Marketakis
12:00 PM StocksAndFisheriesKB Bug #12906: Update "problematic" records in the GRSF admin catalog: It might be good to republish the entire data set to avoid any undetected issues.
In example today I was preparing a... Aureliano Gentile
09:32 AM StocksAndFisheriesKB Bug #12906 (Closed): Update "problematic" records in the GRSF admin catalog: Because of the related issues, there are several records that have problems. Once all these problems are resolved, we... Yannis Marketakis
12:14 PM D4Science Infrastructure VRE #12913 (Removed): gCubeApps/ICOS_ETC VRE Removal: The VRE will be undeployed next week Massimiliano Assante
12:09 PM D4Science Infrastructure VRE #12344 (Released): AlienAndInvasiveSpecies VRE: Massimiliano Assante
12:08 PM D4Science Infrastructure VRE #12344 (Available): AlienAndInvasiveSpecies VRE: Massimiliano Assante
10:15 AM D4Science Infrastructure Task #12444 (Closed): Enable TLS/SSL on the mongodb production cluster: Roberto Cirillo
10:11 AM D4Science Infrastructure Upgrade #12868 (Completed): FARM VO upgrade to gCube 4.13: Roberto Cirillo
10:10 AM D4Science Infrastructure Upgrade #12867 (Completed): gCubeApps VO upgrade to gCube 4.13: Roberto Cirillo
09:44 AM StocksAndFisheriesKB Bug #12261 (Closed): Multiple time series in GRSF from RAM data: Yannis Marketakis
09:44 AM StocksAndFisheriesKB Bug #12261: Multiple time series in GRSF from RAM data: The issue has been resolved.
As a proof of concept, I ve updated one GRSF record (http://data.d4science.org/ctlg/... Yannis Marketakis
09:34 AM StocksAndFisheriesKB Bug #12424 (Closed): Stock status FAO categories not properly handled: The issue has been resolved.
As a proof of concept I've updated the records in the catalog (http://data.d4science.o... Yannis Marketakis

Nov 19, 2018

07:04 PM D4Science Infrastructure Upgrade #12865 (Completed): D4Science Root VO upgrade to gCube 4.13: Roberto Cirillo
02:29 PM D4Science Infrastructure Upgrade #12865 (In Progress): D4Science Root VO upgrade to gCube 4.13: Roberto Cirillo
06:41 PM D4Science Infrastructure Incident #12896 (Closed): GRSF_Admin - RStudio unavailable: Andrea Dell'Amico
10:59 AM D4Science Infrastructure Incident #12896 (Resolved): GRSF_Admin - RStudio unavailable: Thank you, it works Emmanuel Blondel
10:46 AM D4Science Infrastructure Incident #12896: GRSF_Admin - RStudio unavailable: @emmanuel.blondel1@gmail.com now your user is working on GRSF_Admin VRE.
Please could you check? Roberto Cirillo
10:10 AM D4Science Infrastructure Incident #12896: GRSF_Admin - RStudio unavailable: Seems to be a hostname problem on the following garr VM: ip-90-147-167-29.ct1.garrservices.it
The /etc/hostname fi... Roberto Cirillo
09:46 AM D4Science Infrastructure Incident #12896 (In Progress): GRSF_Admin - RStudio unavailable: Roberto Cirillo
09:10 AM D4Science Infrastructure Incident #12896 (Closed): GRSF_Admin - RStudio unavailable: ``
Error (400) : this resource cannot process this request because it is malformed
Stacktrace:
org.gcube.smartgear... Emmanuel Blondel
06:36 PM D4Science Infrastructure Support #12901 (Closed): Impossible to publish a Dataminer algorithm: I've tried to publish an algorithm in SAI, but I get an error message with logs:
``
An error occurred while deplo... Emmanuel Blondel
04:33 PM D4Science Infrastructure Upgrade #12869 (Completed): D4Research VO upgrade to gCube 4.13: Roberto Cirillo
02:30 PM D4Science Infrastructure Upgrade #12869 (In Progress): D4Research VO upgrade to gCube 4.13: Roberto Cirillo
03:58 PM StocksAndFisheriesKB Bug #12261 (Feedback): Multiple time series in GRSF from RAM data: The publisher client has been updated.
Whenever there are time-series coming from RAM data source, then instead of t... Yannis Marketakis
03:49 PM StocksAndFisheriesKB Bug #12424 (In Progress): Stock status FAO categories not properly handled: OK. Then I suggest to keep the controlled vocabulary for now and we'll see in the future if we want to relax this con... Yannis Marketakis
03:45 PM StocksAndFisheriesKB Bug #12424: Stock status FAO categories not properly handled: The FAO state of a stock is based on a controlled vocabulary, which however it changes across time. The above new ite... Aureliano Gentile
03:35 PM StocksAndFisheriesKB Bug #12424: Stock status FAO categories not properly handled: Aureliano Gentile wrote:
> I thought the categories were transparent to the process and received blindly whatever is... Yannis Marketakis
03:21 PM StocksAndFisheriesKB Bug #12424: Stock status FAO categories not properly handled: I thought the categories were transparent to the process and received blindly whatever is in the source databases (le... Aureliano Gentile
02:56 PM StocksAndFisheriesKB Bug #12424 (Feedback): Stock status FAO categories not properly handled: This issue appeared because there were some of the identified categories missing (not fully exploited in this case). ... Yannis Marketakis
02:29 PM D4Science Infrastructure Upgrade #12868 (In Progress): FARM VO upgrade to gCube 4.13: Roberto Cirillo
02:29 PM D4Science Infrastructure Upgrade #12867 (In Progress): gCubeApps VO upgrade to gCube 4.13: Roberto Cirillo

Nov 16, 2018

04:43 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed: Thank you Andrea for trying. I reported your findings to our developers and they seem to have an idea why it does not... Lars Valentin
01:20 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed: The installation still fails:
~~~
!SESSION 2018-11-16 13:17:40.660 ----------------------------------------------... Andrea Dell'Amico
01:15 PM D4Science Infrastructure Incident #12894 (In Progress): Update of FSK plugin failed: Andrea Dell'Amico
09:39 AM D4Science Infrastructure Incident #12894 (Closed): Update of FSK plugin failed: Hello Andrea,
there is at the moment no KNIME FSKlab plugin installed in the DataMiner.
I am sure this was caus... Lars Valentin
03:49 PM StocksAndFisheriesKB Task #12856: Verification of GRSF merging process: # Merging stocks
## Pre-requisites
* species in the records under merging should be the same. If not the same,... Yannis Marketakis
03:06 PM D4Science Infrastructure Support #12831 (Closed): delete accounts on GEMex: Massimiliano Assante
03:00 PM D4Science Infrastructure Support #12831 (In Progress): delete accounts on GEMex: Massimiliano Assante
01:40 PM StocksAndFisheriesKB Bug #12420: Narrative text is messed up when in multiple xml nodes: This issue happens because the sequence of the narrative texts was not preserved (it was not defined to do so).
FORT... Yannis Marketakis
01:34 PM StocksAndFisheriesKB Bug #12419: Fishing Pressure time series is missing in several records: Clarification:
The first record has two values for Abundance Level, and one for Fishing Pressure.
These values we... Yannis Marketakis
01:26 PM StocksAndFisheriesKB Bug #12424 (In Progress): Stock status FAO categories not properly handled: The value in the GRSF KB is correct, so this is an issue appeared during the publishing. Yannis Marketakis
01:21 PM StocksAndFisheriesKB Bug #12261 (In Progress): Multiple time series in GRSF from RAM data: Today we have discussed with FAO, about how to proceed with this issue.
We ended up that the best way to resolve th... Yannis Marketakis
10:55 AM D4Science Infrastructure Upgrade #12869 (Planned): D4Research VO upgrade to gCube 4.13: Roberto Cirillo
10:52 AM D4Science Infrastructure Upgrade #12868 (Planned): FARM VO upgrade to gCube 4.13: Roberto Cirillo
10:52 AM D4Science Infrastructure Upgrade #12867 (Planned): gCubeApps VO upgrade to gCube 4.13: Roberto Cirillo
10:10 AM D4Science Infrastructure Upgrade #12865 (Planned): D4Science Root VO upgrade to gCube 4.13: Roberto Cirillo
09:37 AM D4Science Infrastructure Task #11821 (Closed): Ansible: Provide a new role for storageHub webapp: Tested in preproduction. the new parameter has been added properly Roberto Cirillo

Nov 15, 2018

11:49 AM D4Science Infrastructure Task #12884 (Closed): AlienAndInvasiveSpecies : Geonetwork Resource: Roberto and Fabio don't worry about above exceptions... simply you may ignore it.
They are generated from deprecated... Francesco Mangiacrapa
09:59 AM D4Science Infrastructure Task #12884 (Closed): AlienAndInvasiveSpecies : Geonetwork Resource: I've seen the following exception on portal log:
~~~
2018-11-15 08:48:04,816 INFO server.GCubeGeoExplorerServlet... Roberto Cirillo

Nov 14, 2018

05:32 PM D4Science Infrastructure Task #11450 (Closed): Install Knime 3.5: I think we have 3.6.1 already installed and can close the ticket? https://support.d4science.org/issues/12579 Lars Valentin
11:14 AM D4Science Infrastructure VM Creation #12863 (Closed): Create a new VM as data1.d4science.org to release the URI-Resolver REST version: The URI-Resolver has been installed correctly. It works (e.g at http://data1-p.d4science.org/info). Thanks Francesco Mangiacrapa

Nov 13, 2018

06:37 PM D4Science Infrastructure VM Creation #12863 (Feedback): Create a new VM as data1.d4science.org to release the URI-Resolver REST version: The uri-resolver has also been installed. Can you check? Andrea Dell'Amico
06:21 PM D4Science Infrastructure VM Creation #12863: Create a new VM as data1.d4science.org to release the URI-Resolver REST version: @andrea.dellamico@isti.cnr.it and @tommaso.piccioli@isti.cnr.it many thanks.
The uri-resolver component is searcha... Francesco Mangiacrapa
05:35 PM D4Science Infrastructure VM Creation #12863: Create a new VM as data1.d4science.org to release the URI-Resolver REST version: The VM has been provisioned in all its components but the uri-resolver. Waiting for the maven coordinates.
Andrea Dell'Amico
05:03 PM D4Science Infrastructure VM Creation #12863: Create a new VM as data1.d4science.org to release the URI-Resolver REST version: @francesco.mangiacrapa@isti.cnr.it Where do I can find the URI resolver artifact? We do not have an ansible role for ... Andrea Dell'Amico
11:22 AM D4Science Infrastructure VM Creation #12863 (In Progress): Create a new VM as data1.d4science.org to release the URI-Resolver REST version: data1-p.d4science.org created as requested, to be provisioned. Tommaso Piccioli
06:36 PM D4Science Infrastructure Task #12871 (Closed): Create ansible role to install the URI resolver.: Andrea Dell'Amico
06:35 PM D4Science Infrastructure Task #12871 (In Progress): Create ansible role to install the URI resolver.: Andrea Dell'Amico
06:29 PM D4Science Infrastructure Task #12871 (Closed): Create ansible role to install the URI resolver.: Maven coordinates:
The Maven coordinates are:
~~~
<groupId>org.gcube.data.transfer</groupId>
<artifactId>... Andrea Dell'Amico
05:34 PM D4Science Infrastructure Task #12835 (Closed): Backup support for openrefine.aginfra.d4science.org: Tommaso Piccioli
05:01 PM StocksAndFisheriesKB Task #12861 (Closed): Purge old records of the public GRSF Catalogue: done https://ckan-grsf.d4science.org/group Francesco Mangiacrapa
04:36 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue: Yes please do.
Thanks Yannis Marketakis
03:02 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue: Yannis Marketakis wrote:
> If we remove them they are will be re-created when we publish data. Is that correct?
Y... Francesco Mangiacrapa
11:41 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue: If we remove them they are will be re-created when we publish data. Is that correct? Yannis Marketakis
02:51 PM D4Science Infrastructure Incident #12866 (Closed): Etics doesn't build since 9th November: build process on the building machine was blocked and I restarted it. New results should be available in few hours Gabriele Giammatteo
10:42 AM D4Science Infrastructure Incident #12866 (Closed): Etics doesn't build since 9th November: The last etics build of gCube 4.13 has been performed on Friday 9 November as showed here:
http://eticsbuild2.rese... Roberto Cirillo
12:11 PM D4Science Infrastructure Task #12682 (Closed): Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: Francesco Mangiacrapa
12:10 PM D4Science Infrastructure Upgrade #12869: D4Research VO upgrade to gCube 4.13: **Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** dm-pool-manager-proto.d4science.org
* **(CNR) DONE** spd... Roberto Cirillo
12:04 PM D4Science Infrastructure Upgrade #12869 (Completed): D4Research VO upgrade to gCube 4.13: Roberto Cirillo
12:02 PM D4Science Infrastructure Upgrade #12868: FARM VO upgrade to gCube 4.13: **Hosting Nodes**

*WHN to upgrade*
* **(CNR) DONE** dm-pool-manager-proto.d4science.org
* **(CNR) DONE**... Roberto Cirillo
11:33 AM D4Science Infrastructure Upgrade #12868 (Completed): FARM VO upgrade to gCube 4.13: Roberto Cirillo
11:24 AM D4Science Infrastructure Upgrade #12867: gCubeApps VO upgrade to gCube 4.13: **Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** dm-pool-manager-proto.d4science.org
* **(CNR) DONE** ... Roberto Cirillo
11:04 AM D4Science Infrastructure Upgrade #12867 (Completed): gCubeApps VO upgrade to gCube 4.13: Roberto Cirillo
10:17 AM D4Science Infrastructure Support #12864 (In Progress): Nagios down: Nagios restarted, now I'm searching the cause of the down. Tommaso Piccioli
09:56 AM D4Science Infrastructure Support #12864 (Closed): Nagios down: If I try to check the service alert, I've a message error:
~~~
Whoops!
Error: Could not read host and service st... Roberto Cirillo
10:15 AM D4Science Infrastructure Upgrade #12865: D4Science Root VO upgrade to gCube 4.13: **HostingNode**
*GHN to upgrade*
* **(POSTPONED)** all enabling services (IS-Collector, IS-Registry): upgrade a... Roberto Cirillo
10:03 AM D4Science Infrastructure Upgrade #12865 (Completed): D4Science Root VO upgrade to gCube 4.13: Roberto Cirillo

Nov 12, 2018

06:58 PM D4Science Infrastructure VM Creation #12863: Create a new VM as data1.d4science.org to release the URI-Resolver REST version: OK. So stand alone right now, under the load balancer when the new uri-resolver and the other apps can live with smar... Andrea Dell'Amico
06:41 PM D4Science Infrastructure VM Creation #12863: Create a new VM as data1.d4science.org to release the URI-Resolver REST version: Andrea Dell'Amico wrote:
> Ehm. The VM already exists, it was created to test the smartgears based uri-resolver. Do ... Francesco Mangiacrapa
06:16 PM D4Science Infrastructure VM Creation #12863: Create a new VM as data1.d4science.org to release the URI-Resolver REST version: Ehm. The VM already exists, it was created to test the smartgears based uri-resolver. Do you really need a new one?
Andrea Dell'Amico
06:13 PM D4Science Infrastructure VM Creation #12863 (Closed): Create a new VM as data1.d4science.org to release the URI-Resolver REST version: Francesco Mangiacrapa
05:54 PM D4Science Infrastructure Incident #10095 (Closed): Workspace: a .dms strange file is returned when uploading files by Safari: I investigated the issue and tried to fix it but unfortunately I can't because the "issue" seems to be related to GWT... Francesco Mangiacrapa
05:30 PM StocksAndFisheriesKB Task #12861 (Feedback): Purge old records of the public GRSF Catalogue: All records have been removed from https://ckan-grsf.d4science.org/
@marketak@ics.forth.gr and @minadakn@ics.forth.g... Francesco Mangiacrapa
12:35 PM StocksAndFisheriesKB Task #12861 (In Progress): Purge old records of the public GRSF Catalogue: Francesco Mangiacrapa
11:55 AM StocksAndFisheriesKB Task #12861 (Closed): Purge old records of the public GRSF Catalogue: We need to remove all records of the public GRSF Catalogue (it's https://ckan-grsf.d4science.org/) Francesco Mangiacrapa
12:19 PM StocksAndFisheriesKB Task #12858: Purge old records from public GRSF VRE: Yannis Marketakis wrote:
> @francesco.mangiacrapa@isti.cnr.it and @luca.frosini@isti.cnr.it could you please remov... Francesco Mangiacrapa
12:13 PM StocksAndFisheriesKB Task #12858 (In Progress): Purge old records from public GRSF VRE: @francesco.mangiacrapa@isti.cnr.it and @luca.frosini@isti.cnr.it could you please remove them all from the GRSF VRE ? Yannis Marketakis
10:58 AM StocksAndFisheriesKB Task #12858: Purge old records from public GRSF VRE: Yes, the GRSF VRE shoudl be empty so to receive approved records from the GRSF Admin. (to note the inheriting of thos... Aureliano Gentile
10:27 AM D4Science Infrastructure Task #12789: DMPoolManger - Support Python 3.6: The tests have been successful, everything works correctly.
The support to Python 3.6 will be released in gCube 4.13... Giancarlo Panichi
10:17 AM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files: Right now, I've removed manually the access log from node24.p.d4science and collector-d4research.d4science.org
Pl... Roberto Cirillo

Nov 11, 2018

12:28 PM StocksAndFisheriesKB Task #12860 (New): Prepare a press release for GRSF: Upon the approval of some GRSF records, it is important to have a press release that can be used for further dissemin... Yannis Marketakis
12:24 PM StocksAndFisheriesKB Task #12859 (New): Ensure that approved GRSF records are public: Ensure that the approved GRSF records published in the VRE (https://services.d4science.org/group/grsf/) are publicly ... Yannis Marketakis
12:21 PM StocksAndFisheriesKB Task #12858 (Closed): Purge old records from public GRSF VRE: Currently, there are some records in the GRSF public VRE (https://services.d4science.org/group/grsf/). These are the ... Yannis Marketakis
12:17 PM StocksAndFisheriesKB Task #12857 (Closed): Bulk approval of (valid) GRSF records: FORTH will approve (programmatically) a few records from the GRSF admin. More specifically:
* Assessment units un... Yannis Marketakis
12:13 PM StocksAndFisheriesKB Task #12856 (Closed): Verification of GRSF merging process: Before proceeding with the actual merging of GRSF records, it is important to verify how it will be done for each cas... Yannis Marketakis

Nov 10, 2018

05:44 AM D4Science Infrastructure Incident #10095: Workspace: a .dms strange file is returned when uploading files by Safari: It seems the patch is not working ... just upload a couple of files and continue receiving back the .dms file.
The... Leonardo Candela

Nov 09, 2018

05:15 PM D4Science Infrastructure Incident #10095 (In Progress): Workspace: a .dms strange file is returned when uploading files by Safari: Analyzing the contents of .dms file, it contains the response returned by the server when the uploading is terminated... Francesco Mangiacrapa
02:41 PM D4Science Infrastructure Support #12813 (Closed): /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): Problem solved installing java7.
Now all the container smartgears based are registered properly. Roberto Cirillo
12:55 PM D4Science Infrastructure Support #12813 (Feedback): /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): I guess it could be a java incompatibility. Please @tommaso.piccioli@isti.cnr.it could you try to downgrade the local... Roberto Cirillo
12:34 PM D4Science Infrastructure Support #12813 (In Progress): /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): The new Registry instance is up and running but I see that only the gCore based containers are able to register the p... Roberto Cirillo
12:20 PM D4Science Infrastructure Support #12813: /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): Any news on this question? Giancarlo Panichi
10:00 AM D4Science Infrastructure Support #12813 (Feedback): /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): The java version installed isn't compatible with gCore based service:
OpenJDK Runtime Environment (build 1.8.0_171... Roberto Cirillo
10:32 AM D4Science Infrastructure VRE #12848 (Removed): D4Research/BOBLME_HilsaAWG Removal: The VRE will be undeployed next week Massimiliano Assante

Nov 08, 2018

06:29 PM D4Science Infrastructure Support #12813 (In Progress): /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): node9-d-d4s.d4science.org created as new node, up and running. Tommaso Piccioli
03:08 PM D4Science Infrastructure Support #12813: /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): Please @tommaso.piccioli@isti.cnr.it could you plan this activity?
At this moment we cannot have any new service on... Roberto Cirillo
02:31 PM D4Science Infrastructure Task #10825 (Closed): Refactor the ansible roles and playbooks to remove some complexity: The refactoring is complete for all the main roles and playbooks.
Andrea Dell'Amico
02:30 PM D4Science Infrastructure Task #12154 (Closed): Switch hosts from d4science.org to d4science.net: This ticket can be closed, according to the new letsencrypt policy we can maintain the dev and pre hostnames under th... Andrea Dell'Amico
02:20 PM D4Science Infrastructure Support #12737 (Closed): Social-ISTI- mongoR4-si heartbeat fails from mongoR2-si: Roberto Cirillo
01:22 PM D4Science Infrastructure Support #12737 (Feedback): Social-ISTI- mongoR4-si heartbeat fails from mongoR2-si: As it has been verified that the restarts are caused by the backup system and it's the way the procedure is supposed ... Andrea Dell'Amico
01:57 PM D4Science Infrastructure Task #12835 (Closed): Backup support for openrefine.aginfra.d4science.org: Only the /srv directory needs to be backed up.
Andrea Dell'Amico

Nov 07, 2018

05:09 PM D4Science Infrastructure Task #12799: Memory problems on ckan-d4s1.d4science.org: Keep in mind that the *old* ckan-d4s must be reconfigured in the same way. Andrea Dell'Amico
05:04 PM D4Science Infrastructure Task #12799: Memory problems on ckan-d4s1.d4science.org: The only solution at the moment is to increase the RAM memory. Please, perform it and close the ticket after that. Francesco Mangiacrapa
04:49 PM D4Science Infrastructure Task #12742 (Feedback): DataMiner - Support Python 3.6: python 3.6 is installed on every dataminer. Andrea Dell'Amico
04:14 PM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: OK, I just started the installation. Andrea Dell'Amico
11:21 AM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: You can organize this activity as you see fit. Giancarlo Panichi
11:15 AM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: I understand. Do I need to wait for your tests to be complete, or can I start the deployment? It's going to take some... Andrea Dell'Amico
11:09 AM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: Yes, you can provision it first but in facts it can not be used before gCube 4.13. Giancarlo Panichi
11:06 AM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: OK for the DM part, but the python installation is independent from that: it does not clash with anything else, so it... Andrea Dell'Amico
10:27 AM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: As it is written in the ticket #12789 is being tested, if it works it will be released in gCube 4.13, not before. Giancarlo Panichi
10:20 AM D4Science Infrastructure Task #12742: DataMiner - Support Python 3.6: @g.panichi@isti.cnr.it any news on this one?
Andrea Dell'Amico
04:11 PM D4Science Infrastructure Task #11394 (Closed): Dismiss certs.research-infrastructures.eu: VM is now down, let's keep the disk. Tommaso Piccioli
01:43 PM D4Science Infrastructure Task #11394: Dismiss certs.research-infrastructures.eu: let me check... Tommaso Piccioli
01:41 PM D4Science Infrastructure Task #11394 (In Progress): Dismiss certs.research-infrastructures.eu: @tommaso.piccioli@isti.cnr.it we can destroy this VM, correct?
Andrea Dell'Amico
01:52 PM ISTI Open Access Bug #12669 (Closed): Wrong encoding after startup: Fixed for both the dnet and solr containers (no changes to the provisioning settings, that option is now the default).
Andrea Dell'Amico
01:51 PM ISTI Open Access Bug #12669 (In Progress): Wrong encoding after startup: The option `-Dfile.encoding=UTF-8` was missing from the tomcat JDK options at startup.
When you started the services... Andrea Dell'Amico
01:44 PM D4Science Infrastructure Support #12636 (Feedback): Redmine: preventing email addresses to be shown in public projects: The current behaviour is the expected one. We can make the project private, or tell the users that do not want their ... Andrea Dell'Amico
01:41 PM D4Science Infrastructure Task #4243 (Closed): Migrate SSL certificate from GARR/TERENA to Let's Encrypt: We can close this one. Andrea Dell'Amico
01:12 PM D4Science Infrastructure Support #12831: delete accounts on GEMex: Please delete the following account:
* Gestion Tecnica - gemex.gestion.tecnica @gmail.com
* Jimenez Esteban - ejime... Eugenio Trumpy
11:54 AM D4Science Infrastructure Support #12831 (Closed): delete accounts on GEMex: Please delete the following account:
* Gestion Tecnica - gemex.gestion.tecnica @gmail.com
* Jimenez Esteban - ejime... Eugenio Trumpy
12:27 PM D4Science Infrastructure Support #12737: Social-ISTI- mongoR4-si heartbeat fails from mongoR2-si: It's not correct I guess.
Latest mongo restart has happened yesterday as reported in the mongo log:
~~~
Tue Nov... Roberto Cirillo
11:52 AM D4Science Infrastructure Support #12737 (In Progress): Social-ISTI- mongoR4-si heartbeat fails from mongoR2-si: We had no new alerts since when @tommaso.piccioli@isti.cnr.it disabled ipv6 on the hypervisor that had it enabled, am... Andrea Dell'Amico
11:34 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Thats great! We will then have it right after the new version is published from our side.
But still, I can't even ... Lars Valentin
10:10 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Lars Valentin wrote:
> Hi Andrea,
>
> I still don't see a climb in the Grafana CPU fields with the links provided... Andrea Dell'Amico
08:43 AM D4Science Infrastructure Task #12806: Testing the new settings of the RAKIP infrastructure: Hi Andrea,
I still don't see a climb in the Grafana CPU fields with the links provided above after executing my te... Lars Valentin
11:13 AM D4Science Infrastructure Support #12813: /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): Any update on this? I see the VM is still down. Roberto Cirillo
10:17 AM D4Science Infrastructure Task #12789 (In Progress): DMPoolManger - Support Python 3.6: I have updated the DMPoolManager to support Python 3.6.
Currently the solution is being tested if it works will be r... Giancarlo Panichi

Nov 06, 2018

03:31 PM D4Science Infrastructure Incident #12809 (Closed): Error while trying to update a resource via monitoring portlet: The GUI stalled (Several minutes already passed)
Reloading the resource in root scope it has been updated successf... Luca Frosini
02:57 PM D4Science Infrastructure Incident #12809: Error while trying to update a resource via monitoring portlet: The problem was due to an old scope (Edison VO) present on the resource. Now I've cleaned the resource and it should ... Roberto Cirillo
01:01 PM D4Science Infrastructure Incident #12809: Error while trying to update a resource via monitoring portlet: Roberto Cirillo wrote:
> I've retried right now and it works fine for me. Maybe you are doing something wrong
I c... Luca Frosini
01:00 PM D4Science Infrastructure Incident #12809: Error while trying to update a resource via monitoring portlet: I've retried right now and it works fine for me. Maybe you are doing something wrong Roberto Cirillo
12:54 PM D4Science Infrastructure Incident #12809: Error while trying to update a resource via monitoring portlet: I still get the same error Luca Frosini
12:03 PM D4Science Infrastructure Incident #12809 (Feedback): Error while trying to update a resource via monitoring portlet: The new editing portlet has been added to next.d4science.org.
Please @luca.frosini@isti.cnr.it could you retry to ... Roberto Cirillo
03:05 PM D4Science Infrastructure Task #12827 (Closed): Configure CKAN to store .cache files (that are session info) in memory: @tommaso.piccioli@isti.cnr.it has noticed under '/tmp/[ckan_name]/sessions' directory that milions of file are create... Francesco Mangiacrapa
02:25 PM D4Science Infrastructure Incident #10095: Workspace: a .dms strange file is returned when uploading files by Safari: This issue is still happening in Safari if the upload button into the workspace application. It should be fixed Massimiliano Assante
10:48 AM D4Science Infrastructure Task #12818 (Closed): DMPoolManager - Update dm-pool-manager-pre.d4science.org to last builds of dataminer-pool-manager: Done. Roberto Cirillo
10:42 AM D4Science Infrastructure Task #12818 (In Progress): DMPoolManager - Update dm-pool-manager-pre.d4science.org to last builds of dataminer-pool-manager: Roberto Cirillo
10:29 AM D4Science Infrastructure Incident #12823 (Closed): geoserver-aquacultureatlas.d4science.org: No space left on device: Fallback deleted and distribution upgraded successfully. Roberto Cirillo
10:26 AM D4Science Infrastructure Incident #12823 (In Progress): geoserver-aquacultureatlas.d4science.org: No space left on device: I'm going to upgrade the distribution. Roberto Cirillo
10:26 AM D4Science Infrastructure Incident #12823 (Closed): geoserver-aquacultureatlas.d4science.org: No space left on device: The geoserver-aquacultureatlas.d4science.org has 30GB of fallback file. Roberto Cirillo

Nov 05, 2018

05:36 PM D4Science Infrastructure Upgrade #12772: D4Science Preprod Gateway upgrade to gCube 4.13.0: workspace-widget-portlet-1.1.0-4.13.0 to be updated due to storage hub dependencies upgrade Massimiliano Assante
05:04 PM D4Science Infrastructure Task #12818 (Closed): DMPoolManager - Update dm-pool-manager-pre.d4science.org to last builds of dataminer-pool-manager: Update dm-pool-manager-pre.d4science.org with the last builds of:

~~~
dataminer-pool-manager/2.5.0@173965:
~~~
... Giancarlo Panichi
03:07 PM D4Science Infrastructure Support #12813 (Closed): /gcube root-VO: IS-Registry down (node9-d-d4s.d4science.org): The IS-Registry of /gcube scope is down.
The problem is due to the Xen server where
node9-d-d4s.d4science.org is h... Roberto Cirillo
12:58 PM D4Science Infrastructure Incident #12809 (In Progress): Error while trying to update a resource via monitoring portlet: When a resource is deployed on all the scopes like Accounting-Persistent resource, the edit is very slow. This happen... Roberto Cirillo
12:43 PM D4Science Infrastructure Incident #12809 (Closed): Error while trying to update a resource via monitoring portlet: While trying to update a property in the resource with id **dc458d64-0e52-4de7-82dc-8e9ef6abc5a3**, I obtain the foll... Luca Frosini

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