D4science

May 02, 2019

12:16 PM ISTI Open Access Feature #16613 (Feedback): Access to dnet-openportal only from ISTI network

I just restricted the https access to our networks. Let me know if we still need http autentication. Andrea Dell'Amico

12:06 PM ISTI Open Access Feature #16613 (In Progress): Access to dnet-openportal only from ISTI network

Andrea Dell'Amico

10:39 AM ISTI Open Access Feature #16613 (Closed): Access to dnet-openportal only from ISTI network

I noticed that there are a lot of attempts to access to dnet information service (port 80).
Can you permit the acc... Michele Artini

09:46 AM D4Science Infrastructure Task #12788 (Closed): DMPoolManager - The dm-pool-manager-pre.d4science.org has problems when an algorithm is republished

Yes, the ticket is 6 months old. Now, there is a new Preproduction infrastructure. Giancarlo Panichi

Apr 30, 2019

05:40 PM D4Science Infrastructure Task #12788: DMPoolManager - The dm-pool-manager-pre.d4science.org has problems when an algorithm is republished

this ticket can be closed ? Lucio Lelii

05:38 PM D4Science Infrastructure Task #11152 (Closed): Catch OOM-Kill activity from DataMiner

Lucio Lelii

05:37 PM D4Science Infrastructure Task #13183 (Closed): Remove the services running on SmartArea VO

Lucio Lelii

05:37 PM D4Science Infrastructure Task #10273 (Closed): DataMiner algorithms local testing

Lucio Lelii

05:36 PM D4Science Infrastructure Task #9121 (Closed): VREs deployed on FARM have disappeared from VRE-Modeler

Lucio Lelii

05:36 PM D4Science Infrastructure Task #8845 (Closed): dataminer3-p-d4s: Too Many open file

Lucio Lelii

05:35 PM D4Science Infrastructure Task #8001 (Closed): Add deploy instructions for CkanConnector service

Lucio Lelii

05:35 PM D4Science Infrastructure Task #5737 (Closed): Process resubmit fails

Lucio Lelii

05:35 PM D4Science Infrastructure Task #3752 (Closed): merge a new version of a codelist with an existing one

Lucio Lelii

05:34 PM D4Science Infrastructure Task #1848 (Closed): Update VREModelerResource.FunctionalityResource

Lucio Lelii

05:34 PM D4Science Infrastructure Task #1120 (Closed): Conversion to geometry

Lucio Lelii

05:32 PM D4Science Infrastructure Task #9569 (Closed): HL: Problem with locks

Lucio Lelii

Apr 24, 2019

01:54 PM StocksAndFisheriesKB Task #12856: Verification of GRSF merging process

Thanks @aureliano.gentile@fao.org.
This is fixed now.
In addition, we've made some progress with the merging of ... Yannis Marketakis

11:54 AM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

thanks a lot, Yannis! I'll check the listed records to try to understand why the country codes are missing in FS. Marina Mendes

Apr 23, 2019

08:59 AM StocksAndFisheriesKB Bug #16587: Approve and Archive RAM no longer monitored stocks

The records have been published with the proper status in GRSF. I guess you mean that the panel on the right indicati... Yannis Marketakis

Apr 22, 2019

08:21 PM StocksAndFisheriesKB Bug #16587: Approve and Archive RAM no longer monitored stocks

With many thanks.
I see that in the "GRSF" VRE it is not possible to access the Archived records. In the [[GRSF_da... Aureliano Gentile

01:11 PM StocksAndFisheriesKB Bug #16587 (Closed): Approve and Archive RAM no longer monitored stocks

The corresponding records have been archived, with their annotation messages. Yannis Marketakis

11:23 AM StocksAndFisheriesKB Bug #16587 (In Progress): Approve and Archive RAM no longer monitored stocks

Yannis Marketakis

09:31 AM D4Science Infrastructure 3rdPartyApplication Support #8214 (Rejected): Mobile app to use the oauth2 service

Panagiota Koltsida

Apr 19, 2019

03:31 PM StocksAndFisheriesKB Bug #16587 (Closed): Approve and Archive RAM no longer monitored stocks

Please approve and archive the attached list of ** 34** stocks from RAM which are no longer monitored (in FIRMS is th... Aureliano Gentile

02:19 PM StocksAndFisheriesKB Bug #16498 (Feedback): Update Management Entities Information

I found 39 records that (for a strange reason) haven't been updated. Now they're OK.
The following records are still... Yannis Marketakis

01:05 PM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

http://data.d4science.org/ctlg/GRSF_Admin/062bda35-7228-34b2-ba8f-63794d975e35 Marina Mendes

12:57 PM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

the same with this one http://data.d4science.org/ctlg/GRSF_Admin/cd1629e2-d7fa-3859-a64b-20f1cf5aa38f
thanks Yannis! Marina Mendes

11:56 AM StocksAndFisheriesKB Task #12856: Verification of GRSF merging process

provided that this ticket is for manual merge (the automatic merge is more stringent), please note that in the google... Aureliano Gentile

Apr 18, 2019

04:25 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

I know you have already identified the issues technically but my understanding, based in just a small sample, is that... Marina Mendes

03:56 PM StocksAndFisheriesKB Bug #16498 (In Progress): Update Management Entities Information

Marina Mendes wrote:
> Hi Yannis, thanks for your work on this. I can confirm the records identified in notes 43 and... Yannis Marketakis

03:16 PM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

this record
http://data.d4science.org/ctlg/GRSF_Admin/20366f4e-5949-31be-9ff9-816a8c79e661
is missing the national... Marina Mendes

02:15 PM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

Hi Yannis, thanks for your work on this. I can confirm the records identified in notes 43 and 44 of #13250 are update... Marina Mendes

Apr 17, 2019

04:20 PM StocksAndFisheriesKB Task #12856: Verification of GRSF merging process

A first working implementation of merging GRSF Stock records has been implemented.
At this point, I would like some... Yannis Marketakis

Apr 11, 2019

06:40 PM D4Science Infrastructure Task #2306 (Closed): Customize http://dataminer.d4science.org/wps/

The servers are now configured to support this request, e.g. http://dataminer-prototypes.d4science.org/wps/ Leonardo Candela

05:57 PM D4Science Infrastructure Task #6676 (Closed): Reconcile VRE Folder roles with VRE Manager Roles

The feature is there. Leonardo Candela

10:52 AM StocksAndFisheriesKB Task #16441 (Closed): Update all Records in GRSF (Admin and Public VREs)

Yannis Marketakis

10:50 AM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

If you wish to check the updated records, attached you will find the list of catalog URLs for the records that have b... Yannis Marketakis

10:45 AM StocksAndFisheriesKB Bug #16498 (Feedback): Update Management Entities Information

The management entities have been updated w.r.t. the latest information from FishSource.
In addition, we have upd... Yannis Marketakis

10:33 AM StocksAndFisheriesKB Bug #13289 (In Progress): biological stock being recognized as a marine resource

Thanks Merul for the list.
Attached you will find the list updated with information from the GRSF KB. More specific... Yannis Marketakis

Apr 10, 2019

11:25 AM StocksAndFisheriesKB Bug #16498: Update Management Entities Information

The attached list contains the fishery records to be updated w.r.t. the updates in their management entities (i.e. ad... Yannis Marketakis

10:23 AM StocksAndFisheriesKB Bug #16498 (In Progress): Update Management Entities Information

There are various information missing (e.g. acronym, country) from the management entities for several fisheries reco... Yannis Marketakis

09:39 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

As described in previous comments we face those issues because the GRSF has been created using an older harvest from ... Yannis Marketakis

Apr 09, 2019

05:05 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

the same as above:
http://data.d4science.org/ctlg/GRSF_Admin/2416cbc0-c31b-397e-951f-a30ea4cd0f4c
"fishery_name": ... Marina Mendes

05:01 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

one more record missing the national authority - Vice Ministry of Aquaculture and Fisheries of Ecuador (MAGAP) - in t... Marina Mendes

04:47 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

I've reviewed #13334, and am attaching a CSV file with the key fields from all FishSource StockOrAssessmentUnit recor... Merul Patel

11:13 AM StocksAndFisheriesKB Task #16441: Update all Records in GRSF (Admin and Public VREs)

All GRSF Stock records have been updated in GRSF Admin Yannis Marketakis

11:05 AM StocksAndFisheriesKB Bug #16306 (Closed): Species not included in ASFIS database

I've rejected the record, thanks for your help Aureliano. Marina Mendes

11:04 AM StocksAndFisheriesKB Bug #13160 (Feedback): European Commission missing code as management entity

All the GRSF Fishery records have been updated in GRSF Admin. The issue should have been fixed for all of them. Yannis Marketakis

10:59 AM StocksAndFisheriesKB Bug #16262 (Closed): Spelling error in area name of a RAM record

The corresponding records have been updated. Yannis Marketakis

10:57 AM StocksAndFisheriesKB Bug #16377 (Feedback): Citation template does not match current citation

All the GRSF records have been updated in GRSF Admin.
As a result the citation should have been updated for all of t... Yannis Marketakis

10:55 AM StocksAndFisheriesKB Task #16375 (Feedback): Bulk approval of RAM records - type assessment unit - without similar records

The 352 GRSF records have been approved and published in GRSF VRE. Yannis Marketakis

10:54 AM StocksAndFisheriesKB Bug #16261 (Feedback): FAO3alpha code missing for 2 RAM records

The FAO Alpha-3 codes for the corresponding records have been fixed.
In addition, I've update the semantic identifie... Yannis Marketakis

Apr 08, 2019

04:01 PM StocksAndFisheriesKB Bug #16261: FAO3alpha code missing for 2 RAM records

Thanks for the feedback. I've updated the GRSF KB accordingly.
I'll start updating the records as well. Yannis Marketakis

03:38 PM StocksAndFisheriesKB Bug #16261: FAO3alpha code missing for 2 RAM records

I see in ASFIS 2018 (asfis 2019 will come in the next month or so) there is only:
"34" "1780100154" **"RIQ"** "Seb... Aureliano Gentile

02:57 PM StocksAndFisheriesKB Bug #16261: FAO3alpha code missing for 2 RAM records

In addition, we have the following species that do not have an alpha-3 code? Is there something about them?
* Par... Yannis Marketakis

02:52 PM StocksAndFisheriesKB Bug #16261 (In Progress): FAO3alpha code missing for 2 RAM records

I'll fix that. In addition, I found another one that can be fixed. To this end, we'll update the following:
* Cle... Yannis Marketakis

03:09 PM StocksAndFisheriesKB Task #16439: Update Records containing special Characters

Comment for @aureliano.gentile@fao.org
WRT the excessive text for the Management entity in the semantic identifie... Merul Patel

02:35 PM StocksAndFisheriesKB Task #16439: Update Records containing special Characters

with many thanks, look fine.
For the record I put here this comment for @merul.patel@sustainablefish.org where th... Aureliano Gentile

01:58 PM StocksAndFisheriesKB Task #16439 (Closed): Update Records containing special Characters

The issue has been resolved and the corresponding records have been updated Yannis Marketakis

02:16 PM StocksAndFisheriesKB Bug #16281 (Closed): SFP fishing gears not under the ISSCFG code

The corresponding records have been updated in GRSF Admin VRE. Yannis Marketakis

09:33 AM StocksAndFisheriesKB Task #16375 (In Progress): Bulk approval of RAM records - type assessment unit - without similar records

The corresponding records have been updated in GRSF KB.
I'll trigger updating the GRSF records on GRSF Admin VRE (an... Yannis Marketakis

Apr 05, 2019

02:28 PM StocksAndFisheriesKB Task #16439: Update Records containing special Characters

For some strange reason this issue comes from the GRSF KB (the data are erroneous in the KB).
The actions to proceed... Yannis Marketakis

11:30 AM StocksAndFisheriesKB Task #16439 (In Progress): Update Records containing special Characters

I am sorry, by chance I found this other cases https://ckan-grsf-admin2.d4science.org/dataset/30208061-e58e-3b5b-ad74... Aureliano Gentile

02:26 PM StocksAndFisheriesKB Bug #13301: Missing catches data in RAM time series

That's true. Only the legacy records have been updated.
The GRSF ones will be updated after proceeding with the bulk... Yannis Marketakis

11:47 AM StocksAndFisheriesKB Bug #13301: Missing catches data in RAM time series

Thanks Yannis,
I am not sure if the fix has been already propagated to GRSF (RAM) records or only to the legacy reco... Aureliano Gentile

02:23 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

You are right.
I'll make sure they are published in GRSF VRE as well. Yannis Marketakis

11:12 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

ok, thanks
btw note that so far we have already 31 fishing unit approved in grsf admin:
**31 records found Status ... Aureliano Gentile

10:37 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thanks.
You are right. For the time being, we are updating everything that needs to be updated in GRSF Admin and aft... Yannis Marketakis

10:31 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thanks a lot, I checked a few of them, all fine. Then I made a search by "authority:INT:FFA" and I got 1,789 records ... Aureliano Gentile

09:24 AM StocksAndFisheriesKB Bug #13250 (Feedback): Honduran management organization acronym not appearing

The corresponding GRSF Fishery records have been updated as proposed.- Yannis Marketakis

Apr 04, 2019

03:39 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thanks a lot,
so from
Management Body/Authority(ies) Code: authority:NAT:SLB, System: grsf-org, Name: Forum Fis... Aureliano Gentile

03:15 PM StocksAndFisheriesKB Bug #13250 (In Progress): Honduran management organization acronym not appearing

We can do that. Unfortunately, this change will affect 1789 GRSF fishery records that has to be updated.
I'll update... Yannis Marketakis

12:02 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thanks a lot. I checked randomly a few fisheries and the fix seems fine.
One concern on **FFA** which should be **... Aureliano Gentile

09:16 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

All the GRSF Fishery records have been updated in GRSF_Admin. The issue should be resolved now. Yannis Marketakis

03:11 PM StocksAndFisheriesKB Task #16441: Update all Records in GRSF (Admin and Public VREs)

Yes of course. This is elaborated on #16375. After approving them, we'll update all the GRSF Stock records, so that o... Yannis Marketakis

02:57 PM StocksAndFisheriesKB Task #16441: Update all Records in GRSF (Admin and Public VREs)

just a clarification, in case, the request is to bulk approve RAM records which are only stock/assessment unit type. ... Aureliano Gentile

09:16 AM StocksAndFisheriesKB Task #16441 (In Progress): Update all Records in GRSF (Admin and Public VREs)

All the GRSF Fisheries have been updated in GRSF_Admin Yannis Marketakis

03:08 PM StocksAndFisheriesKB Bug #13301 (Feedback): Missing catches data in RAM time series

All the records from RAM have been updated.
The issue seems to be fixed for the corresponding record (http://data.d... Yannis Marketakis

Apr 03, 2019

03:48 PM StocksAndFisheriesKB Bug #13301: Missing catches data in RAM time series

great, thanks a lot, this is one of the more 'disturbing" bugs... Aureliano Gentile

02:50 PM StocksAndFisheriesKB Bug #13301 (In Progress): Missing catches data in RAM time series

I investigated the issue and noticed that the missing timeseries exist in the GRSF KB but not in the catalog.
This ... Yannis Marketakis

01:59 PM StocksAndFisheriesKB Task #10375 (Paused): Publish a Data Descriptor about GRSF in nature.com

Yannis Marketakis

01:56 PM StocksAndFisheriesKB Bug #16275 (Closed): national authority not showing

There are 4 records from FishSource with this management entity that have been updated.
Obviously, the correspondin... Yannis Marketakis

12:44 PM StocksAndFisheriesKB Bug #16275: national authority not showing

We face this because the harvested data (March 2018) were missing information about the management unit.
Since now ... Yannis Marketakis

12:22 PM StocksAndFisheriesKB Task #16439 (Closed): Update Records containing special Characters

FIRMS records have been updated in GRSF Admin VRE. Yannis Marketakis

12:04 PM StocksAndFisheriesKB Task #16439 (In Progress): Update Records containing special Characters

In this task, we'll update the corresponding records from FIRMS.
After that we will update all the records in GRSF ... Yannis Marketakis

11:38 AM StocksAndFisheriesKB Task #16439: Update Records containing special Characters

The following should be updated:
* 39 records from FIRMS
* 197 records from GRSF ADMIN
* 16 records from GRSF P... Yannis Marketakis

11:37 AM StocksAndFisheriesKB Task #16439 (Closed): Update Records containing special Characters

According to #12421#note-12 we have to update records that contain the following:
Country names
* Côte d'Ivoire
... Yannis Marketakis

12:00 PM StocksAndFisheriesKB Task #16441 (Closed): Update all Records in GRSF (Admin and Public VREs)

Update all the (Stocks and Fisheries) in GRSF Admin.
First we'll update the record in GRSF Admin VRE and then we'l... Yannis Marketakis

11:52 AM StocksAndFisheriesKB Bug #16395 (Closed): GRSF record titles are not updated

Thanks Luca. Works as expected (http://data.d4science.org/ctlg/GRSF_Admin/5dda87ff-3440-3c89-a333-19dfb938c58b) Yannis Marketakis

10:54 AM StocksAndFisheriesKB Bug #16395: GRSF record titles are not updated

@marketak@ics.forth.gr can you also test this issue? Luca Frosini

11:39 AM StocksAndFisheriesKB Bug #12421 (Closed): Accented words are not properly displayed in the "short name" field and in other fields

Yannis Marketakis

11:35 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

Thanks Luca. It works as expected (http://data.d4science.org/ctlg/GRSF_Admin/e3177c4d-4b09-386d-a25f-001b4a82caf1) Yannis Marketakis

10:53 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

@marketak@ics.forth.gr I updated again the service. Sorry for any inconvenience. Luca Frosini

11:30 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

I've updated the management entities with the missing country codes.
In addition, I've updated the semantic IDs of ... Yannis Marketakis

08:58 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thank you Merul for the answer. I was totally unaware of V4.
I will use that instead. Yannis Marketakis