Activity

From Jul 07, 2018 to Aug 05, 2018

Aug 03, 2018

06:53 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: I'll start with the knime installation next week.
Andrea Dell'Amico
05:22 PM D4Science Infrastructure Support #12308 (Closed): Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect: Lino solved the issue for the people who reported the issue.
A generic solution to be applied to remaining users in ... Alessia Bardi
04:29 PM D4Science Infrastructure Support #12314 (Closed): couchbase7 nagios alert: Couchbase seems to be stable at the moment.
We will take care of this issue and these informations if there will be ... Tommaso Piccioli
10:48 AM D4Science Infrastructure Support #12314: couchbase7 nagios alert: In attachment some logs extracted from geoserver-1-p-spatial.d4science.org. Roberto Cirillo
10:46 AM D4Science Infrastructure Support #12314 (Closed): couchbase7 nagios alert: Nagios alert on couchbase7 since this night. Please could you check?
I've found an huge number of accounting logs on... Roberto Cirillo
12:50 PM D4Science Infrastructure Task #12315 (Rejected): geoserver1-p-spatial.d4science.org logs everything ad DEBUG level: Ah sorry, I looked at the logs this morning and I forgot to open the ticket until some minutes ago. In the meantime y... Andrea Dell'Amico
12:39 PM D4Science Infrastructure Task #12315: geoserver1-p-spatial.d4science.org logs everything ad DEBUG level: @andrea.dellamico@isti.cnr.it where do you see the logs at DEBUG level? the container has been restarted today at 10... Roberto Cirillo
12:27 PM D4Science Infrastructure Task #12315 (Rejected): geoserver1-p-spatial.d4science.org logs everything ad DEBUG level: It seems that it runs the old broken logback configuration. Andrea Dell'Amico
11:57 AM D4Science Infrastructure Task #12312 (Closed): Increase RAM on geoserver.d4science.org: OK, so we'll handle the other ones on request, when needed. Andrea Dell'Amico
11:47 AM D4Science Infrastructure Task #12312: Increase RAM on geoserver.d4science.org: The 4 geoservers are used to equally distribute the publication of new geospatial datasets. Then, at access time clea... Pasquale Pagano
11:45 AM D4Science Infrastructure Task #12312: Increase RAM on geoserver.d4science.org: The policy we endorsed with these geoserver instances is to distribute the number of layers they host, so it is possi... Fabio Sinibaldi
11:42 AM D4Science Infrastructure Task #12312: Increase RAM on geoserver.d4science.org: Andrea Dell'Amico wrote:
> On this one only? we also have geoserver2/3/4 with the same hardware resources. The reque... Roberto Cirillo
11:37 AM D4Science Infrastructure Task #12312 (Feedback): Increase RAM on geoserver.d4science.org: The heap size was incremented too. Andrea Dell'Amico
11:14 AM D4Science Infrastructure Task #12312: Increase RAM on geoserver.d4science.org: The VM is now running with 5GB of RAM. Andrea Dell'Amico
11:12 AM D4Science Infrastructure Task #12312 (In Progress): Increase RAM on geoserver.d4science.org: On this one only? we also have geoserver2/3/4 with the same hardware resources. The requests are not evenly distribut... Andrea Dell'Amico
10:18 AM D4Science Infrastructure Task #12312 (Closed): Increase RAM on geoserver.d4science.org: It's needed to add 2 GB of RAM to the following VM
~~~
geoserver.d4science.org
~~~
in order to increase the h... Roberto Cirillo
10:42 AM D4Science Infrastructure Incident #12313 (Closed): geoserver1-p-spatial.d4science.org: disk full for accounting logs: The log level was set to the unknown level FATAL. Now I've replaced FATAL to ERROR and the situation seems to be back... Roberto Cirillo
10:35 AM D4Science Infrastructure Incident #12313 (In Progress): geoserver1-p-spatial.d4science.org: disk full for accounting logs: Roberto Cirillo
10:34 AM D4Science Infrastructure Incident #12313 (Closed): geoserver1-p-spatial.d4science.org: disk full for accounting logs: Only today 1484 file of accounting logs and 1577 file of ghn.log have been written with log level set to DEBUG.
I'... Roberto Cirillo
10:08 AM D4Science Infrastructure Incident #12311 (Closed): geoserver.d4science.org: java.lang.OutOfMemoryError: Java heap space: The container has been restarted. The RAM size should be increased. Roberto Cirillo
10:05 AM D4Science Infrastructure Incident #12311 (In Progress): geoserver.d4science.org: java.lang.OutOfMemoryError: Java heap space: Roberto Cirillo
10:05 AM D4Science Infrastructure Incident #12311 (Closed): geoserver.d4science.org: java.lang.OutOfMemoryError: Java heap space: Roberto Cirillo

Aug 02, 2018

05:40 PM D4Science Infrastructure Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect: Did you keep track of the old and new usernames?
For how many users the username was changed? Alessia Bardi
02:38 PM D4Science Infrastructure Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect: @pasquale.pagano@isti.cnr.it I changed their usernames some days ago, to the ones they have on the old ldap servers. ... Andrea Dell'Amico
02:33 PM D4Science Infrastructure Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect: please @francesco.mangiacrapa@isti.cnr.it and @lucio.lelii@isti.cnr.it try to understand why those users are not able... Pasquale Pagano
01:41 PM D4Science Infrastructure Support #12308 (Closed): Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect: Eloy Rodrigues (eloy@sdum.uminho.pt) and José Carvalho (jcarvalho@sdum.uminho.pt) can't access the workspace folders ... Alessia Bardi
05:38 PM D4Science Infrastructure Task #12310 (In Progress): is-exporter.d4science.org contains wrong plugin: is-exporter.d4science.org contains accounting-aggregator plugin instead of the is-exporter plugin.
I stopped the c... Luca Frosini
05:31 PM D4Science Infrastructure Task #12310 (Closed): is-exporter.d4science.org contains wrong plugin: Luca Frosini
04:20 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: I've just deployed grsf-services-updater on http://maven.research-infrastructures.eu/nexus/content/repositories/gcube... Yannis Marketakis
01:23 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Do we have an artifact yet? I cannot find anything in nexus. Andrea Dell'Amico
02:51 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents: I see that now the resource is correctly published on FARM VO and the portlet works on CollabResearch VRE. Roberto Cirillo
02:47 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents: OK, thanks. Andrea Dell'Amico
02:45 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents: There was a problem with the registry service of FARM VO during the restart from last night. Now the problem is solve... Roberto Cirillo
02:34 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents: It also happens for /d4science.research-infrastructures.eu/FARM/D4STeam, but I don't know why. @roberto.cirillo@isti.... Andrea Dell'Amico
01:55 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents: I'm not able to use sharelatex.
At https://services.d4science.org/group/collabresearch/sharelatex I get:
No gCo... Luca Frosini
01:04 PM D4Science Infrastructure Incident #12303 (Closed): The production Sharelatex instance is not using a permanent storage for the users documents: There's no way to add a volume to an existing container. As we are running a specific version with lots of local cust... Andrea Dell'Amico
01:01 PM D4Science Infrastructure Incident #12303 (In Progress): The production Sharelatex instance is not using a permanent storage for the users documents: Andrea Dell'Amico
01:15 PM D4Science Infrastructure Task #12307 (Closed): Backup the container volumes: On sharelatex.d4science.org: /srv/sharelatex_data/
On docker-exec1.d4science.org: /var/lib/docker/volumes/
Andrea Dell'Amico
11:29 AM D4Science Infrastructure Task #12247 (Closed): Please upgrade collector-sa-d4s.smart-applications.area.pi.cnr.it: The node has been upgraded Roberto Cirillo
10:55 AM D4Science Infrastructure Task #12247 (In Progress): Please upgrade collector-sa-d4s.smart-applications.area.pi.cnr.it: This is the resource-manager service, it's not smartgears but gCore. gCore based services are still run with Java7. I... Roberto Cirillo

Aug 01, 2018

04:39 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents: I'm going to stop the service, copy the user data outside the container, than restart the container with the external... Andrea Dell'Amico
04:38 PM D4Science Infrastructure Incident #12303 (Closed): The production Sharelatex instance is not using a permanent storage for the users documents: There was a mistake in the ansible task that launches the container instance: the syntax for the volume configuration... Andrea Dell'Amico
04:30 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Lars Valentin wrote:
> Dear Andrea,
>
> in the future we want to allow the user to run there own R models in our... Andrea Dell'Amico
01:05 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Dear Andrea,
in the future we want to allow the user to run there own R models in our service (workflow). The iss... Lars Valentin
02:57 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Dear Lars,
> In order to test the new application for our use case, I need to wait until our KNIME ticket is solve... Pasquale Pagano
12:13 PM D4Science Infrastructure Task #12162 (Closed): Critical memory alert on GNs: geonetwork-aquacultureatlasgeneration.d4science.org restarted with the new heap size. Roberto Cirillo
12:05 PM D4Science Infrastructure Task #12162 (In Progress): Critical memory alert on GNs: Now we have the same problem on geonetwork-aquacultureatlasgeneration.d4science.org.
I'm going to decrease the heap ... Roberto Cirillo

Jul 31, 2018

06:04 PM D4Science Infrastructure Task #12276 (Closed): To much log data on ckan-bb1.d4science.org: the container has been restarted. I'm going to close this ticket. Roberto Cirillo
02:07 PM D4Science Infrastructure Task #12276: To much log data on ckan-bb1.d4science.org: I've just changed the logback configuration on ckan-bb1. Now it's needed a container restart, it will be done this ev... Roberto Cirillo
12:51 PM D4Science Infrastructure Task #12276: To much log data on ckan-bb1.d4science.org: Yes, it's smartgears. Andrea Dell'Amico
12:45 PM D4Science Infrastructure Task #12276: To much log data on ckan-bb1.d4science.org: accounting.log and ghn.log are not logs belonging to CKAN. Are they of Smartgears?
CKAN's logs are at INFO level a... Francesco Mangiacrapa
12:23 PM D4Science Infrastructure Task #12276 (Closed): To much log data on ckan-bb1.d4science.org: Please, reduce the logging data on ckan-bb1.
At the moment TRACE information are logged (duplicated) in both the acc... Tommaso Piccioli
04:47 PM StocksAndFisheriesKB Bug #12277: Merge action is not working: Yes, although the 24-hour window has passed the records are not merged.
Then, I am saying, that once the two recor... Aureliano Gentile
04:17 PM StocksAndFisheriesKB Bug #12277: Merge action is not working: I understand that the issue here, is that although the 24-hour window has passed the records are not merged right?
... Yannis Marketakis
04:14 PM StocksAndFisheriesKB Bug #12277 (In Progress): Merge action is not working: Yannis Marketakis
12:55 PM StocksAndFisheriesKB Bug #12277 (Closed): Merge action is not working: We tried to merge two records (on 24th of July!) and they are still pending:
https://bluebridge.d4science.org/grou... Aureliano Gentile
04:46 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Dear Pasquale, Dear Francesco,
In order to test the new application for our use case, I need to wait until our KNI... Lars Valentin
04:18 PM StocksAndFisheriesKB Bug #12261: Multiple time series in GRSF from RAM data: Thanks Yannis, I am referring to BdivBmsypref and UdivUmsypref (Biomass and Mortality) which even if they come from a... Aureliano Gentile
04:05 PM StocksAndFisheriesKB Bug #12261: Multiple time series in GRSF from RAM data: I inspected this a little bit and found out that these values come from RAM database.
More specifically, if I filt... Yannis Marketakis
12:09 PM StocksAndFisheriesKB Bug #12261: Multiple time series in GRSF from RAM data: See also the GRSF API http://62.217.127.124:8080/grsf-api/resources/stock_data?uuid=151d2126-c13f-3599-8259-b46388bff... Aureliano Gentile
04:13 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Dear Andrea,
as promised I provide you some of my ANSIBLE code as inspiration for you.
Here a short list of ... Lars Valentin
02:26 PM StocksAndFisheriesKB Feature #12278: Complete Citation development: @aureliano.gentile@fao.org I just recognized that another ticket exists for such a task see #10960.
I'll add it as... Luca Frosini
02:16 PM StocksAndFisheriesKB Feature #12278 (Closed): Complete Citation development: The template for a citation of a GRSF record is the following (from GRSF TWG3 report, Feb. 2018):
© [Copyright hol... Aureliano Gentile
11:05 AM D4Science Infrastructure Task #8040 (Closed): Impossible to produce DWCA for a number of Families: Pasquale Pagano
11:05 AM D4Science Infrastructure Task #7900 (Closed): Generating Darwin Core Archives via SPD: Pasquale Pagano

Jul 30, 2018

08:15 PM D4Science Infrastructure Task #9826 (Closed): issue sharelatex (can't compile a whole report): It's a resources problem, that document requires more resources that we have available. Andrea Dell'Amico
05:46 PM D4Science Infrastructure Task #9826: issue sharelatex (can't compile a whole report): @gianpaolo.coro@isti.cnr.it can you check this ticket please Luca Frosini
06:00 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Lars Valentin wrote:
> What I would like to ask is, how does the user then is informed in that "right click featur... Pasquale Pagano
03:53 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Hi Francesco,
thanks for clarifying, that I just have to integrate a workflow which is defined to have a file as i... Lars Valentin
12:41 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Lars Valentin wrote:
> Francesco Mangiacrapa wrote:
> > HI Lars,
> >
> > for your purpose the facility 'Execute ... Francesco Mangiacrapa
05:39 PM D4Science Infrastructure Task #12262 (Closed): Wrong Rprofile settings for the dev workspace: I also added a default mirror site for CRAN. Andrea Dell'Amico
05:13 PM StocksAndFisheriesKB Feature #12274 (Closed): Handling GRSF annotations: Let me highlight that all annotations are reported in the grsf record page (see also attached screenshot related to ... Aureliano Gentile
05:00 PM StocksAndFisheriesKB Bug #12259 (Closed): Adding annotation in a GRSF record returns an error: Giving that this bug seems solved I'm going to close this ticket. Luca Frosini
04:59 PM StocksAndFisheriesKB Bug #12259: Adding annotation in a GRSF record returns an error: @aureliano.gentile@fao.org please open a new ticket for such a request.
Maybe the issue could not be resolved imme... Luca Frosini
04:16 PM StocksAndFisheriesKB Bug #12259: Adding annotation in a GRSF record returns an error: (Sorry for the delayed answer, I was in meetings all day). So, I tested again and looks fine, many thanks to all.
L... Aureliano Gentile
12:00 PM StocksAndFisheriesKB Bug #12259: Adding annotation in a GRSF record returns an error: @aureliano.gentile@fao.org can you test it? Luca Frosini
11:58 AM StocksAndFisheriesKB Bug #12259 (Feedback): Adding annotation in a GRSF record returns an error: The service updating the records has been modified. Yannis Marketakis
04:00 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Dear Andrea,
> Tuesday at 12:00? Is it OK? I'll send you a google hangouts link 10 minutes before the start.
So... Lars Valentin
02:53 PM D4Science Infrastructure Task #12270 (Closed): Shutdown resource-registry until the next upgrade: Luca Frosini
02:03 PM D4Science Infrastructure Task #12270 (Closed): Shutdown resource-registry until the next upgrade: Luca Frosini
02:53 PM D4Science Infrastructure Task #12271 (Closed): Stop resource-regsitry containers: Luca Frosini
02:05 PM D4Science Infrastructure Task #12271 (Closed): Stop resource-regsitry containers: Actually, there are 2 instances:
resource-registry1.d4science.org
resource-registry2.d4science.org Luca Frosini
02:45 PM D4Science Infrastructure Task #12272 (Closed): Deactive nagios monitoring and load-balancer on resource regsitry: Disabled both the nagios checks and the load balancer frontend and backend. Andrea Dell'Amico
02:30 PM D4Science Infrastructure Task #12272 (In Progress): Deactive nagios monitoring and load-balancer on resource regsitry: Andrea Dell'Amico
02:07 PM D4Science Infrastructure Task #12272 (Closed): Deactive nagios monitoring and load-balancer on resource regsitry: Involved instances are:
resource-registry1.d4science.org
resource-registry2.d4science.org Luca Frosini
02:05 PM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: Luca Frosini wrote:
> I restarted the resource-registry which is the old version (the new one cannot be used because... Roberto Cirillo
11:58 AM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: I restarted the resource-registry which is the old version (the new one cannot be used because it impact on all the c... Luca Frosini
11:15 AM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: Luca Frosini wrote:
> the host was down again because orientdb refuses the connections.
>
> Can you please check... Andrea Dell'Amico
10:57 AM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: The container is restart every midnight because in the past it leaks memory. Every smart-executor try to connect to o... Luca Frosini
10:54 AM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: the host was down again because orientdb refuses the connections.
Can you please check monitoring.research-infras... Luca Frosini
10:32 AM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: Andrea Dell'Amico wrote:
> Luca Frosini wrote:
>
> > Moreover I found that there are tentative connections from 1... Luca Frosini
12:07 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Thank you @gabriele.giammatteo@eng.it Yannis Marketakis
11:54 AM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: I also granted permissions to create and edit new components in the data-catalogue subsystem. I tried to add also per... Gabriele Giammatteo
11:16 AM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Thanks @gabriele.giammatteo@eng.it . I confirm I can edit the configuration.
@luca.frosini@isti.cnr.it could you ... Yannis Marketakis
10:06 AM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Hi @marketak@ics.forth.gr, I granted you permission to edit and build the component. Let me know if it works and if y... Gabriele Giammatteo

Jul 28, 2018

02:10 PM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: Luca Frosini wrote:
> Moreover I found that there are tentative connections from 146.48.122.24 (postgresql-srv-dev... Andrea Dell'Amico

Jul 27, 2018

08:40 PM D4Science Infrastructure Task #12258: Remove old buckets: There are still the checks on accounting_service Tommaso Piccioli
07:13 PM D4Science Infrastructure Task #12258 (Closed): Remove old buckets: Nagios checks on accounting_storage removed Tommaso Piccioli
05:27 PM D4Science Infrastructure Task #12258: Remove old buckets: @tommaso.piccioli@isti.cnr.it I deleted some buckets. Can you please remove the nagios checks on the following bucke... Luca Frosini
03:12 PM D4Science Infrastructure Task #12258 (Paused): Remove old buckets: 'accounting_service' buckets will be removed at the end of September if no other records will be found. I set the due... Luca Frosini
03:10 PM D4Science Infrastructure Task #12258 (In Progress): Remove old buckets: Luca Frosini
03:09 PM D4Science Infrastructure Task #12258: Remove old buckets: All the following buckets has been successfully removed:
accounting_storage
accounting_portlet
accounting_job
acc... Luca Frosini
03:05 PM D4Science Infrastructure Task #12258 (Closed): Remove old buckets: The following buckets are empty since months.
accounting_storage
accounting_portlet
accounting_job
accounting_tas... Luca Frosini
07:10 PM D4Science Infrastructure Task #12263 (Closed): Restart Accounting Aggregator: I successfully restarted orientdb and accounting-aggregator.d4science.org smartgears container.
Please note th... Luca Frosini
07:05 PM D4Science Infrastructure Task #12263: Restart Accounting Aggregator: The smart-executor did not started correctly as happened for social-indexer-plugin see #12203
orientdb01-d4s denye... Luca Frosini
06:54 PM D4Science Infrastructure Task #12263 (Closed): Restart Accounting Aggregator: Luca Frosini
06:23 PM D4Science Infrastructure Task #12257 (Closed): Restart couchbase cluster: All 8 nodes updated and restarted. Tommaso Piccioli
03:25 PM D4Science Infrastructure Task #12257: Restart couchbase cluster: I will do a package upgrade during this restart. Tommaso Piccioli
03:20 PM D4Science Infrastructure Task #12257: Restart couchbase cluster: couchbase03.d4science.org has been successfully restarted and it is up again in the cluster. Luca Frosini
03:16 PM D4Science Infrastructure Task #12257: Restart couchbase cluster: couchbase03.d4science.org is going to be restarted
It was running for 160 days Luca Frosini
03:06 PM D4Science Infrastructure Task #12257: Restart couchbase cluster: Restarted nodes are:
couchbase02.d4science.org
couchbase04.d4science.org
couchbase07.d4science.org
couchbase0... Luca Frosini
03:00 PM D4Science Infrastructure Task #12257 (Closed): Restart couchbase cluster: Luca Frosini
05:58 PM D4Science Infrastructure Task #12262 (Closed): Wrong Rprofile settings for the dev workspace: I've just found this piece of code into the Rprofile that we distribute:
~~~
getCredentials<-function(){
machi... Andrea Dell'Amico
05:46 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Lars Valentin wrote:
> Andrea Dell'Amico wrote:
> > Lars Valentin wrote:
> >
> > >
> > > In the past, we have ... Andrea Dell'Amico
05:02 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Andrea Dell'Amico wrote:
> Lars Valentin wrote:
>
> >
> > In the past, we have offered to help you with maintai... Lars Valentin
04:47 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Lars Valentin wrote:
>
> In the past, we have offered to help you with maintaining your KNIME installation. I su... Andrea Dell'Amico
04:27 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Andrea Dell'Amico wrote:
> @lars.valentin@bfr.bund.de I see that I can download a bundle that contains all the kni... Lars Valentin
04:09 PM D4Science Infrastructure Support #12249 (In Progress): Need installed KNIME 3.6 and R 3.4 including the listed plugins: About the R packages: the missing ones from your list were
~~~
miniCRAN
msm
Rserve
~~~
and they will be ava... Andrea Dell'Amico
04:03 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: @lars.valentin@bfr.bund.de I see that I can download a bundle that contains all the knime extensions, but not the com... Andrea Dell'Amico
05:19 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Francesco Mangiacrapa wrote:
> HI Lars,
>
> for your purpose the facility 'Execute DM Task" is available from you... Lars Valentin
12:46 PM D4Science Infrastructure Support #12250 (Feedback): so called "right click feature" to send model file from folder directly to the dataminer: HI Lars,
for your purpose the facility 'Execute DM Task" is available from your Workspace. You can call it by open... Francesco Mangiacrapa
04:46 PM StocksAndFisheriesKB Bug #12261 (Closed): Multiple time series in GRSF from RAM data: We are finding errors/unexplained behavior in several RAM records, in example here:
http://data.d4science.org/ctlg/G... Aureliano Gentile
04:37 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Thanks @luca.frosini@isti.cnr.it for the prompt reaction. Unfortunately, I cannot edit it.
@mariaantonietta.dig... Yannis Marketakis
04:30 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: I created the component 'grsf-services-updater' under 'data-catalogue' subsystem.
Let us know if you have the righ... Luca Frosini
04:24 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Thanks Luca for your reply.
I can create the configuration in ETICS.
Firstly, I have to see where I should put i... Yannis Marketakis
10:46 AM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Hi @marketak@ics.forth.gr
the system engineer need the artefact to deploy. I mean the war. Our provisioning frame... Luca Frosini
08:37 AM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: Andrea Dell'Amico wrote:
> @marketak@ics.forth.gr is there a build for the two applications? Did you connect the sou... Yannis Marketakis
04:20 PM StocksAndFisheriesKB Bug #12259: Adding annotation in a GRSF record returns an error: thanks @marketak@ics.forth.gr Luca Frosini
04:13 PM StocksAndFisheriesKB Bug #12259: Adding annotation in a GRSF record returns an error: It seems that there is an escape character (\n) in the annotation message that messes up the update in the knowledge ... Yannis Marketakis
03:26 PM StocksAndFisheriesKB Bug #12259: Adding annotation in a GRSF record returns an error: @marketak@ics.forth.gr any ideas? Luca Frosini
03:22 PM StocksAndFisheriesKB Bug #12259 (Closed): Adding annotation in a GRSF record returns an error: I have added the following comment in this record: http://data.d4science.org/ctlg/GRSF_Admin/b165b8a4-d259-3796-9922-... Aureliano Gentile
12:36 PM D4Science Infrastructure Task #12090 (Feedback): Remove Edison VO scope from infrastructure-monitor: Massimiliano Assante
12:25 PM D4Science Infrastructure Task #12090 (In Progress): Remove Edison VO scope from infrastructure-monitor: Massimiliano Assante
11:43 AM D4Science Infrastructure Support #12254 (In Progress): geoserver-french-tunaatlas: strange accounting logs and high load: There should be only one FallbackMonitor thread per scope. the log evidenced that there are many.
This thread does n... Luca Frosini
10:14 AM D4Science Infrastructure Support #12254 (Closed): geoserver-french-tunaatlas: strange accounting logs and high load: I see a lot of the following accounting logs on ghn.log. The load is very high (27) and no recent calls have been reg... Roberto Cirillo
11:17 AM StocksAndFisheriesKB Feature #10928: Further GRSF Management panel enhancements: due to changes in a related task Francesco Mangiacrapa
11:17 AM StocksAndFisheriesKB Feature #12255 (Closed): Pop-up Text improvement for the locked records: Commented reported by Aureliano:
*If I try to edit again https://bluebridge.d4science.org/group/grsf_admin/data-ca... Francesco Mangiacrapa
10:41 AM D4Science Infrastructure Task #12226 (Closed): Nagios: remove replicaset checks from mongo-p-vol.d4science.org: Roberto Cirillo
10:38 AM D4Science Infrastructure Task #12226: Nagios: remove replicaset checks from mongo-p-vol.d4science.org: As explained here #8788 the check is working now but when the authenication will be enabled with the new SCRAM-SHA1 m... Roberto Cirillo
09:58 AM D4Science Infrastructure Task #12162 (Closed): Critical memory alert on GNs: geonetwork-iotcss3.d4science.org has been restarted with the new heap setting. Roberto Cirillo
09:53 AM D4Science Infrastructure Task #12162 (In Progress): Critical memory alert on GNs: After 15 days we have again the same problem on geonetwork-iotcss3.d4science.org.
The load is very low now and no re... Roberto Cirillo

Jul 26, 2018

06:53 PM D4Science Infrastructure Task #11976: New load balancer for the tagme service: As it seems that we solved the problem with the x509 certificates, we can use services-lb.d4science.org. The rate lim... Andrea Dell'Amico
06:00 PM D4Science Infrastructure VRE #12251 (Released): FIT4RRI VRE: Massimiliano Assante
06:00 PM D4Science Infrastructure VRE #12251 (Available): FIT4RRI VRE: Everything is set, https://services.d4science.org/group/fit4rri/fit4rri Massimiliano Assante
05:54 PM D4Science Infrastructure VRE #12251 (In Progress): FIT4RRI VRE: Massimiliano Assante
04:59 PM D4Science Infrastructure VRE #12251 (Released): FIT4RRI VRE: VRE Name: FIT4RRI
VRE Description: Virtual Research Environment to support the FIT4RRI project activity – Fosterin... Massimiliano Assante
05:58 PM D4Science Infrastructure Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: Dear Lars, my colleague Francesco has developed this feature and will point you to the released functionality and rep... Gianpaolo Coro
04:16 PM D4Science Infrastructure Support #12250 (Closed): so called "right click feature" to send model file from folder directly to the dataminer: Dear @gianpaolo.coro@isti.cnr.it ,
as mentioned in the main ticket, we want to use your new so called "right-click... Lars Valentin
05:41 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28: And now the number is 29 as I just deployed a new VRE named FIT4RRI Massimiliano Assante
05:22 PM D4Science Infrastructure Task #12252 (Closed): VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28: The VRE list returned from the modeller here: https://services.d4science.org/group/farm/vre-manager contains 12 VREs ... Massimiliano Assante
04:58 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: Gianpaolo Coro wrote:
> Hi, the tomcat had been restarted. The fact that the test works enforces my guess that there... Andrea Dell'Amico
04:41 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: Hi, the tomcat had been restarted. The fact that the test works enforces my guess that there is something at tomcat l... Gianpaolo Coro
03:10 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: @gianpaolo.coro@isti.cnr.it can you run some different test? I cannot explain the behaviour, the errors start on July... Andrea Dell'Amico
03:01 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: Run more than once, it never failed. Andrea Dell'Amico
02:53 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: The test you posted does not fail. The xml response is:
~~~
<wps:ExecuteResponse xmlns:wps="http://www.opengis.... Andrea Dell'Amico
04:00 PM D4Science Infrastructure Support #12249 (Closed): Need installed KNIME 3.6 and R 3.4 including the listed plugins: Dear @gianpaolo.coro@isti.cnr.it,
as requested by @pasquale.pagano@isti.cnr.it, I opened a sub-ticket to better se... Lars Valentin
03:45 PM D4Science Infrastructure VM Creation #11954 (In Progress): VM to host the GRSF-services-updater service: updater.grsf.d4science.org is running, to be deployed Tommaso Piccioli
03:34 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: * /d4science.research-infrastructures.eu/FARM/GRSF_Admin
* /d4science.research-infrastructures.eu/FARM/GRSF Massimiliano Assante
03:23 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: @marketak@ics.forth.gr is there a build for the two applications? Did you connect the source to our CI service?
Andrea Dell'Amico
03:20 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service: @luca.frosini@isti.cnr.it I need the smartgears scope here. Andrea Dell'Amico
03:26 PM D4Science Infrastructure Task #12247 (Closed): Please upgrade collector-sa-d4s.smart-applications.area.pi.cnr.it: Looking couchbase buckets I noticed two records in the old bucket accounting_service accounted for the host
http:/... Luca Frosini
03:10 PM D4Science Infrastructure Task #451 (Rejected): New VO creation for preproduction: Pasquale Pagano
03:08 PM D4Science Infrastructure Task #1802 (Rejected): Provide 2 new VMs for hosting Cassandra in pre production environment: Pasquale Pagano
03:07 PM D4Science Infrastructure Task #1802 (In Progress): Provide 2 new VMs for hosting Cassandra in pre production environment: Pasquale Pagano
03:08 PM D4Science Infrastructure Task #1801 (Rejected): Provide 3 new VMs for hosting CouchDB in pre production environment: Pasquale Pagano
03:07 PM D4Science Infrastructure Task #1801 (In Progress): Provide 3 new VMs for hosting CouchDB in pre production environment: Pasquale Pagano
03:08 PM D4Science Infrastructure Task #1790 (Rejected): Provide 2 new MongoDB nodes v 3.0 for preproduction environment: Pasquale Pagano
03:07 PM D4Science Infrastructure Task #1790 (In Progress): Provide 2 new MongoDB nodes v 3.0 for preproduction environment: Pasquale Pagano
02:10 PM StocksAndFisheriesKB Bug #11754 (Closed): Wrong or missing format for source/data owner metadata in narrative fields (Assessment Methods ; Scientific advice ; State and trend of Marine Resource): Luca Frosini

Jul 25, 2018

08:29 PM D4Science Infrastructure Task #11980 (Closed): Add the involvement filter plugin to the d4science redmine instance: Done on both dev and production instances. Andrea Dell'Amico
08:21 PM D4Science Infrastructure Task #11980 (In Progress): Add the involvement filter plugin to the d4science redmine instance: Andrea Dell'Amico
08:08 PM D4Science Infrastructure Task #12235: New support.d4science.org static html page: I changed the nagios check, it now points to the `/login` URL.
Andrea Dell'Amico
08:04 PM D4Science Infrastructure Task #12235 (Closed): New support.d4science.org static html page: The new redmine home page is in place. Andrea Dell'Amico
06:54 PM D4Science Infrastructure Task #12235 (In Progress): New support.d4science.org static html page: I'm working on it right now. Expect some downtime. Andrea Dell'Amico
05:35 PM D4Science Infrastructure Task #12235: New support.d4science.org static html page: Please, can we proceed with this activity? If not possible, we have to change all the records published in the catalo... Pasquale Pagano
09:57 AM D4Science Infrastructure Task #12235 (Closed): New support.d4science.org static html page: The folder zipped here http://data.d4science.org/cWlwS2VvVmh3LzkwQm81eFEySDVPNURIeGdjT3RRalZHbWJQNStIS0N6Yz0 contains... Massimiliano Assante
06:06 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: Gianpaolo Coro wrote:
> Yes, the issue is weird but this morning I have verified it is just on that machine. The pro... Andrea Dell'Amico
02:26 PM D4Science Infrastructure Task #12241 (Rejected): Setup New gateway open-science.it: We need to setup a new gateway on liferay cluster and that would respond to https://open-science.it
Please start b... Massimiliano Assante
11:19 AM StocksAndFisheriesKB Bug #12212 (Closed): Error when trying to change status of a GRSF record: Dear Aureliano,
from your feedback the issue related to change status of a GRSF record seems fixed.
We can close ... Francesco Mangiacrapa
11:07 AM StocksAndFisheriesKB Task #11124 (Closed): Testing the GRSF management panel: Francesco Mangiacrapa
09:48 AM D4Science Infrastructure Task #12226 (In Progress): Nagios: remove replicaset checks from mongo-p-vol.d4science.org: Roberto Cirillo

Jul 24, 2018

11:48 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: Yes, the issue is weird but this morning I have verified it is just on that machine. The process that highlighted the... Gianpaolo Coro
04:25 PM D4Science Infrastructure Task #12227 (In Progress): Encoding issue on Dataminer proto 5: I just compared the relevant parts of dataminer4-proto and dataminer5-proto without founding any difference:
* env... Andrea Dell'Amico
12:10 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5: For the time being, we are going to stop dataminer5-proto in order to make the NLP Hub work. Gianpaolo Coro
11:48 AM D4Science Infrastructure Task #12227 (Closed): Encoding issue on Dataminer proto 5: I have a difficult issue on one of the prototype Dataminers for which I need help:
There are several algorithms o... Gianpaolo Coro
06:25 PM D4Science Infrastructure Task #12226: Nagios: remove replicaset checks from mongo-p-vol.d4science.org: Specific nagios group created to check standalone mongodb implementation.
Waiting for a user "nagios" to run the aut... Tommaso Piccioli
10:10 AM D4Science Infrastructure Task #12226 (Closed): Nagios: remove replicaset checks from mongo-p-vol.d4science.org: mongo-p-vol.d4science.org VM hosts a standalone mongodb instance.
The replicaset nagios check are not compatible w... Roberto Cirillo
03:10 PM D4Science Infrastructure Task #12058 (Closed): IS-Collector: Restart all the smartgears services with too many open connections to IS-Collector: Roberto Cirillo
03:09 PM StocksAndFisheriesKB Bug #12212: Error when trying to change status of a GRSF record: I have also tested the merge with another assessment unit and apparently it is fine. But:
1) I did not receive any... Aureliano Gentile
02:21 PM StocksAndFisheriesKB Bug #12212: Error when trying to change status of a GRSF record: Dear colleagues,
I tested again changing status to http://data.d4science.org/ctlg/GRSF_Admin/34b80228-8fb8-3c70-9d... Aureliano Gentile
11:09 AM D4Science Infrastructure Task #12008 (Rejected): grsf-publisher deployed on gcube-staging repo doesn't work: Luca Frosini
11:02 AM D4Science Infrastructure Incident #12203: News Feed search function returns result up to mid June 2018: I confirm that now the search works with the latest posts of July as well. Massimiliano Assante
10:32 AM D4Science Infrastructure Incident #12203 (Closed): News Feed search function returns result up to mid June 2018: The smart-executor was not restarted correctly because it was not able to connect to orientdb (orientdb01-d4s.d4scien... Luca Frosini
09:56 AM D4Science Infrastructure Incident #12203: News Feed search function returns result up to mid June 2018: any update? Roberto Cirillo
11:00 AM D4Science Infrastructure Incident #12063 (Closed): Storage Hub Recent Documents do not get updated in SoBigData.eu VRE: Yes, the problem is fixed with the rollout of the gCube 4.12 release (although it takes up to 10 seconds to get the r... Massimiliano Assante
10:14 AM D4Science Infrastructure Incident #12063: Storage Hub Recent Documents do not get updated in SoBigData.eu VRE: Is this problem solved? @massimiliano.assante@isti.cnr.it @lucio.lelii@isti.cnr.it Roberto Cirillo
09:47 AM D4Science Infrastructure Incident #12178 (Closed): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value: Roberto Cirillo

Jul 23, 2018

06:52 PM D4Science Infrastructure Task #12110 (Closed): DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere: Done. Andrea Dell'Amico
06:48 PM D4Science Infrastructure Task #12110: DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere: The upgrade is running. Andrea Dell'Amico
06:42 PM D4Science Infrastructure Task #12110 (In Progress): DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere: Andrea Dell'Amico
04:37 PM D4Science Infrastructure Task #12183 (Closed): Please add nagios check to monitor the correct functioning of social networking service: They are working. Andrea Dell'Amico
04:23 PM D4Science Infrastructure Task #12183 (Feedback): Please add nagios check to monitor the correct functioning of social networking service: I also added the system checks, they were missing too. Andrea Dell'Amico
04:01 PM D4Science Infrastructure Task #12183 (In Progress): Please add nagios check to monitor the correct functioning of social networking service: Andrea Dell'Amico
04:20 PM D4Science Infrastructure Upgrade #12222 (Completed): D4Science Gateway 2nd upgrade to gCube 4.12.0: Massimiliano Assante
04:14 PM D4Science Infrastructure Upgrade #12222: D4Science Gateway 2nd upgrade to gCube 4.12.0: @dkatris@di.uoa.gr the upgrade of the visualise portlets has been completed Massimiliano Assante
03:34 PM D4Science Infrastructure Upgrade #12222 (In Progress): D4Science Gateway 2nd upgrade to gCube 4.12.0: Massimiliano Assante
11:47 AM D4Science Infrastructure Upgrade #12222 (Completed): D4Science Gateway 2nd upgrade to gCube 4.12.0: The upgrade does not require downtime and it will deploy the updated versions of the following components:
* portl... Massimiliano Assante
01:26 PM StocksAndFisheriesKB Bug #12212 (Feedback): Error when trying to change status of a GRSF record: The issue occurred because the client could not retrieve the URL of the GRSFPublisher service for GRSF-Admin VRE.
... Yannis Marketakis
09:22 AM StocksAndFisheriesKB Bug #12212 (In Progress): Error when trying to change status of a GRSF record: Hi Fransesco,
Yes I'll check it out. Yannis Marketakis

Jul 20, 2018

02:20 PM D4Science Infrastructure Incident #12214 (Closed): DataMiners cannot interact with the Storage System: Yes, it seems that everything works correctly. I close this ticket. Giancarlo Panichi
12:54 PM D4Science Infrastructure Incident #12214 (Feedback): DataMiners cannot interact with the Storage System: The disk space on the volatile mongo instance has been incremented and the server restarted. Does it solve the datami... Andrea Dell'Amico
12:53 PM D4Science Infrastructure Incident #12214 (In Progress): DataMiners cannot interact with the Storage System: Andrea Dell'Amico
12:29 PM D4Science Infrastructure Incident #12214: DataMiners cannot interact with the Storage System: I see that the mongo instance on that server is down.
So: we do not have monitoring of those instances, it seems.... Andrea Dell'Amico
12:20 PM D4Science Infrastructure Incident #12214 (Closed): DataMiners cannot interact with the Storage System: No DM is currently working in any VRE because they get errors when interacting with the Storage system. The issue is ... Gianpaolo Coro
02:16 PM D4Science Infrastructure Incident #12213 (Closed): Algorithms not installed on dataminer1-proto: Giancarlo Panichi
02:16 PM D4Science Infrastructure Incident #12213 (Resolved): Algorithms not installed on dataminer1-proto: Giancarlo Panichi
01:12 PM D4Science Infrastructure Incident #12213: Algorithms not installed on dataminer1-proto: Yes, I was working on it. Now, MongoDB has also started up and it seems that everything works correctly. Giancarlo Panichi
12:21 PM D4Science Infrastructure Incident #12213 (In Progress): Algorithms not installed on dataminer1-proto: I just removed the list of installed algorithms but I see that the cron job execution has been commented out.
I also... Andrea Dell'Amico
12:13 PM D4Science Infrastructure Incident #12213 (Closed): Algorithms not installed on dataminer1-proto: Algorithms are not installed on this machine, like the last part of the installation did not run after the latest upg... Gianpaolo Coro
12:50 PM D4Science Infrastructure Task #12215 (Closed): Increase disk space on mongo-p-vol.d4science.org: mongo-p-vol restarted with 3 GB of memory and 200 GB of storage Tommaso Piccioli
12:38 PM D4Science Infrastructure Task #12215 (Closed): Increase disk space on mongo-p-vol.d4science.org: The mongo-p-vol.d4science.org stopped itself because there's enough space in `/data`
Also, for some reason that I... Andrea Dell'Amico
12:08 PM StocksAndFisheriesKB Bug #12212 (Closed): Error when trying to change status of a GRSF record: @aureliano.gentile@fao.org just started some tests and he found an error in the management panel when tried to chang... Francesco Mangiacrapa

Jul 19, 2018

09:38 PM D4Science Infrastructure Incident #12203: News Feed search function returns result up to mid June 2018: I' ve restart the resource registry instances during gCube 4.12 release, I'm not sure if that's related. However this... Roberto Cirillo
12:46 PM D4Science Infrastructure Incident #12203: News Feed search function returns result up to mid June 2018: Nope, still nothing after Mid-End of June (the latest hit i could get is of June 25th) Massimiliano Assante
12:40 PM D4Science Infrastructure Incident #12203: News Feed search function returns result up to mid June 2018: This service has not been upgraded during gCube 4.12. I've tried to restart it. Please, could you check if it works n... Roberto Cirillo
11:52 AM D4Science Infrastructure Incident #12203 (Closed): News Feed search function returns result up to mid June 2018: It seems that News Feed search function returns result up to mid February 2018, after that no results are returned. I... Massimiliano Assante
05:00 PM D4Science Infrastructure Task #11831: Explore new letsencrypt clients to add wildcard certificates support: We have a wildcard certificate, at last Andrea Dell'Amico
04:52 PM D4Science Infrastructure VRE #12171 (Released): Create a VRE for ICDI: Leonardo Candela
04:51 PM D4Science Infrastructure VRE #12171 (Available): Create a VRE for ICDI: The VRE is available at https://services.d4science.org/group/icdi Leonardo Candela
04:35 PM D4Science Infrastructure VRE #12171 (In Progress): Create a VRE for ICDI: Leonardo Candela
03:59 PM D4Science Infrastructure VRE #12171 (Planned): Create a VRE for ICDI: Leonardo Candela
03:58 PM D4Science Infrastructure VRE #9232 (Released): Create a VRE for EOSCpilot TextCrowd use case: Leonardo Candela

Jul 18, 2018

06:07 PM D4Science Infrastructure Incident #12178: MongoOperationManager - primary db not discovered. Backend will be instantiated with default value: The patch is being distributed on the gateways Massimiliano Assante
10:32 AM D4Science Infrastructure Incident #12178 (Feedback): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value: Roberto Cirillo
10:01 AM D4Science Infrastructure Incident #12178 (In Progress): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value: I see that the problem is still there. I'm going to investigate, anyway this is just a log issue not a real problem. Roberto Cirillo
04:53 PM D4Science Infrastructure Support #12179 (Closed): Aquamaps still run with Java7: OK, thanks Fabio. I'm going to close this ticket. Roberto Cirillo
04:39 PM D4Science Infrastructure Support #12179 (Feedback): Aquamaps still run with Java7: No problem has been found while testing the portlets from BiodiversityLab and AquaMaps VREs.
I suggest to keep the c... Fabio Sinibaldi
03:51 PM D4Science Infrastructure Incident #12176 (Closed): garr site is not reachable: The problem has been solved by the GARR technical support. It seems that it was caused by a problem on the Neutron ga... Andrea Dell'Amico
03:46 PM D4Science Infrastructure Task #12183: Please add nagios check to monitor the correct functioning of social networking service: Is it possible to have a *machine* token? we should not rely on personal tokens for the monitoring checks. Andrea Dell'Amico
12:50 PM D4Science Infrastructure Task #12183 (Closed): Please add nagios check to monitor the correct functioning of social networking service: Here's 2 REST Calls that should be performed every 10 minutes, each of the calls need a user token of one VRE of your... Massimiliano Assante
03:15 PM D4Science Infrastructure Task #12173 (Closed): Suspend all the letsencrypt certificates renewals for 15 days: All the hosts on the d4science.org domain have been reconfigured. The situation can be monitored here: https://crt.sh... Andrea Dell'Amico
03:14 PM D4Science Infrastructure Incident #12182 (Closed): Social Networking service not working: The service seem to work now. Thanks Massimiliano Assante
12:51 PM D4Science Infrastructure Incident #12182: Social Networking service not working: I see a Too Many Open File exception. I'm going to investigate. Roberto Cirillo
12:50 PM D4Science Infrastructure Incident #12182 (In Progress): Social Networking service not working: Roberto Cirillo
12:29 PM D4Science Infrastructure Incident #12182 (Closed): Social Networking service not working: Any call to the social networking service generate t
HTTP Status 500 - Cannot call sendError() after the response ... Massimiliano Assante

Jul 17, 2018

09:03 PM D4Science Infrastructure Upgrade #12113 (Completed): D4Science Gateway upgrade to gCube 4.12.0: Massimiliano Assante
09:02 PM D4Science Infrastructure Upgrade #12113 (In Progress): D4Science Gateway upgrade to gCube 4.12.0: Massimiliano Assante
09:02 PM D4Science Infrastructure Upgrade #12113 (Planned): D4Science Gateway upgrade to gCube 4.12.0: Massimiliano Assante
07:32 PM D4Science Infrastructure Task #12173: Suspend all the letsencrypt certificates renewals for 15 days: Reconfigured all the servers but the ones still unreachable at garr-ct1.
Andrea Dell'Amico
05:23 PM D4Science Infrastructure Task #12173 (In Progress): Suspend all the letsencrypt certificates renewals for 15 days: The cron job has been modified, so that we can specify the days of month (I set 1-15 for our servers) while the hour ... Andrea Dell'Amico
07:23 PM D4Science Infrastructure Support #12179 (Closed): Aquamaps still run with Java7: This service cannot be upgraded because 4.12 has builded in java8.
Please check if it works without any upgrade of s... Roberto Cirillo
07:15 PM D4Science Infrastructure Incident #12178 (Rejected): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value: There was an upgrade on going. Re-open this ticket if the problem happen again Roberto Cirillo
06:58 PM D4Science Infrastructure Incident #12178 (Closed): MongoOperationManager - primary db not discovered. Backend will be instantiated with default value: Since the upgrade today the logs in the gateway server are filled with this warning:
~~~
[PORTAL] 647936 [Species... Massimiliano Assante
07:09 PM D4Science Infrastructure Upgrade #12019 (In Progress): D4Science Infrastructure Upgrade to gCube 4.12.0: Roberto Cirillo
07:08 PM D4Science Infrastructure Upgrade #12019 (Planned): D4Science Infrastructure Upgrade to gCube 4.12.0: Roberto Cirillo
07:06 PM D4Science Infrastructure Upgrade #12150 (Completed): gCubeApps VO upgrade to gCube 4.12: Roberto Cirillo
04:17 PM D4Science Infrastructure Upgrade #12150 (In Progress): gCubeApps VO upgrade to gCube 4.12: Roberto Cirillo
06:53 PM D4Science Infrastructure Incident #12134: Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: Folks, I have modified the version of DM pool manager in dev environment to get SVN credentials from the IS. In parti... Ciro Formisano
06:41 PM D4Science Infrastructure Task #12118 (Closed): MongoDB: upgrade production cluster to version 3.4: Roberto Cirillo
03:46 PM D4Science Infrastructure Task #12118 (Feedback): MongoDB: upgrade production cluster to version 3.4: All nodes, included mongo-p-vol.d4science.org, updated to mongodb-org version 3.4.16 Tommaso Piccioli
03:15 PM D4Science Infrastructure Task #12118 (In Progress): MongoDB: upgrade production cluster to version 3.4: Tommaso Piccioli
06:40 PM D4Science Infrastructure Upgrade #12151 (Completed): D4Research VO upgrade to gCube 4.12: Roberto Cirillo
04:18 PM D4Science Infrastructure Upgrade #12151 (In Progress): D4Research VO upgrade to gCube 4.12: Roberto Cirillo
06:40 PM D4Science Infrastructure Upgrade #12149 (Completed): FARM VO upgrade to gCube 4.12: Roberto Cirillo
04:17 PM D4Science Infrastructure Upgrade #12149 (In Progress): FARM VO upgrade to gCube 4.12: Roberto Cirillo
06:39 PM D4Science Infrastructure Upgrade #12116 (Completed): D4Science Root VO upgrade to gCube 4.12: Roberto Cirillo
01:10 PM D4Science Infrastructure Upgrade #12116 (In Progress): D4Science Root VO upgrade to gCube 4.12: Roberto Cirillo
03:45 PM D4Science Infrastructure Task #12117: MongoDB: upgrade production cluster to version 3.2: All nodes temporarily updated to mongodb-org version 3.2.20 Tommaso Piccioli
03:15 PM D4Science Infrastructure Task #12117 (Closed): MongoDB: upgrade production cluster to version 3.2: Tommaso Piccioli
01:11 PM D4Science Infrastructure Task #12117 (In Progress): MongoDB: upgrade production cluster to version 3.2: Roberto Cirillo
12:20 PM D4Science Infrastructure Incident #12176 (In Progress): garr site is not reachable: The problem is under investigation by the GARR people.
Andrea Dell'Amico
10:42 AM D4Science Infrastructure Incident #12176 (Closed): garr site is not reachable: I'm not able to connect to any garr host Roberto Cirillo

Jul 16, 2018

07:15 PM D4Science Infrastructure Task #12173: Suspend all the letsencrypt certificates renewals for 15 days: Better yet, change the cron job to run only in the first 10/15 days of the month so that we will always have a free w... Andrea Dell'Amico
07:00 PM D4Science Infrastructure Task #12173 (Closed): Suspend all the letsencrypt certificates renewals for 15 days: Let's suspend all the certificates renewals for 15 days, so that we can have a window where we can ask for new certif... Andrea Dell'Amico
04:15 PM D4Science Infrastructure Task #11976: New load balancer for the tagme service: Some resources:
https://gist.github.com/jeremyj/e964a951634f1997daea
https://serverfault.com/questions/555763/hapro... Andrea Dell'Amico
04:07 PM D4Science Infrastructure Task #12157 (Closed): Change the resolv.conf and dhclient.conf configurations on all the GARR instances: I just changed the network configuration on both the GARR regions. The new resolvers should be active in the next 24 ... Andrea Dell'Amico
03:23 PM D4Science Infrastructure Task #12157 (In Progress): Change the resolv.conf and dhclient.conf configurations on all the GARR instances: Never mind. The DNS servers provided by the DHCP service can be changed editing the `subnet` configuration from the O... Andrea Dell'Amico
02:57 PM D4Science Infrastructure Upgrade #12151 (Planned): D4Research VO upgrade to gCube 4.12: Roberto Cirillo
02:56 PM D4Science Infrastructure Upgrade #12150 (Planned): gCubeApps VO upgrade to gCube 4.12: Roberto Cirillo
02:54 PM D4Science Infrastructure Upgrade #12149 (Planned): FARM VO upgrade to gCube 4.12: Roberto Cirillo
02:53 PM D4Science Infrastructure Upgrade #12116 (Planned): D4Science Root VO upgrade to gCube 4.12: Roberto Cirillo
12:56 PM D4Science Infrastructure VRE #12171 (Released): Create a VRE for ICDI: A VRE for supporting the activities of the ICDI initiative will be created. Such a VRE will contain the basic servi... Leonardo Candela
09:47 AM D4Science Infrastructure Task #12169 (Closed): Provide the new dataminer library for dataminer prototypes cluster: The prototypes cluster needs a different job's queue value.
Could you execute a remote build in order to have, just ... Roberto Cirillo

Jul 13, 2018

04:50 PM D4Science Infrastructure Incident #12124 (Closed): Sth wrong with user leonardo.candela and AGINFRA+ Gateway VREs: The Limit set to 99 for the max number of VRE do display in the GoTo has been raised to 160 and this fixed the issue. Massimiliano Assante
02:51 PM D4Science Infrastructure Incident #12124 (In Progress): Sth wrong with user leonardo.candela and AGINFRA+ Gateway VREs: The problem occurred today for pasquale.pagano on SBD Gateway Massimiliano Assante

Jul 12, 2018

07:10 PM D4Science Infrastructure Task #12162 (Closed): Critical memory alert on GNs: Both the services have been restated. Now the situation is back to normal. I'm going to close this ticket. Roberto Cirillo
06:35 PM D4Science Infrastructure Task #12162 (Closed): Critical memory alert on GNs: Various instances of GeoNetwork report a critical Memory Usage. Please invesitgate and take action.
Reported problem... Fabio Sinibaldi
02:22 PM D4Science Infrastructure Support #12115 (Closed): User Management and wrong Acceptance Manager details: The only thing we can do is to ask @p.koltsida@di.uoa.gr to remove the Acceptance Manager column of the table. Please... Massimiliano Assante

Jul 11, 2018

05:46 PM D4Science Infrastructure Task #12156 (Closed): registry-parthenosvo.d4science.org: add nagios checks: Done. I also added checks for collector-parthenosvo.d4science.org.
Andrea Dell'Amico
05:02 PM D4Science Infrastructure Task #12156 (Closed): registry-parthenosvo.d4science.org: add nagios checks: The VM above is still not monitored by nagios.
It's needed to add the standard nagios checks as done for other IS-R... Roberto Cirillo
05:43 PM D4Science Infrastructure Task #12157 (Closed): Change the resolv.conf and dhclient.conf configurations on all the GARR instances: To permanently change the resolvers on the GARR instances we need to modify the dhclient configuration, otherwise the... Andrea Dell'Amico
05:33 PM D4Science Infrastructure Task #3262 (Closed): Change the ldap authentication for the d4science subversion repository: The redbox access has been switched too. The authorized group is `cn=redbox_repo,ou=Groups,dc=d4science,dc=org`
Andrea Dell'Amico
01:37 PM D4Science Infrastructure Task #12154: Switch hosts from d4science.org to d4science.net: tabulardata-devnext-d.dev.d4science.org: VM and IP deleted Tommaso Piccioli
12:51 PM D4Science Infrastructure Task #12154: Switch hosts from d4science.org to d4science.net: tabulardata-devsec.d4science.org could be switched to tabulardata-devsec.d4science.net because the db is hosted on: p... Roberto Cirillo
11:17 AM D4Science Infrastructure Task #12154 (Closed): Switch hosts from d4science.org to d4science.net: This ticket would keep track of all the hosts that could be switched to the new domain "d4science.net".
First list... Roberto Cirillo
12:31 PM D4Science Infrastructure Task #12155 (Closed): Move all development servers to .net domain: All the servers allocated to dev and pre including databases and storage backends have to be moved to .net.
Please... Pasquale Pagano
11:14 AM D4Science Infrastructure Task #11825 (Closed): Setup New gateway performfish.d4science.net: Massimiliano Assante

Jul 10, 2018

05:52 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net: and the gateway is up and running
https://performfish.d4science.net Massimiliano Assante
05:49 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net: The certificate is ready and installed. Andrea Dell'Amico
05:11 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net: @andrea.dellamico@isti.cnr.it please let us know when the certificate for https://performfish.d4science.net/ is ready Massimiliano Assante
05:05 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net: As we are not able to obtain a certificate under the d4science.org domain, has just been decided to use the `performf... Andrea Dell'Amico
04:53 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net: Hi all, people of PerformFish are pushing to have the portal available with the SSL certificate. When can we make it ... Gianpaolo Coro
03:24 PM D4Science Infrastructure Upgrade #12151: D4Research VO upgrade to gCube 4.12: **Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** spd2.d4science.org
* **(CNR) DONE** tabulardata2.d4scien... Roberto Cirillo
03:04 PM D4Science Infrastructure Upgrade #12151 (Completed): D4Research VO upgrade to gCube 4.12: Roberto Cirillo
03:22 PM D4Science Infrastructure Upgrade #12150: gCubeApps VO upgrade to gCube 4.12: **Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** spd1.d4science.org
* **(CNR) DONE** tabulardata1.d4scien... Roberto Cirillo
03:03 PM D4Science Infrastructure Upgrade #12150 (Completed): gCubeApps VO upgrade to gCube 4.12: Roberto Cirillo
03:20 PM D4Science Infrastructure Upgrade #12149: FARM VO upgrade to gCube 4.12: **Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** smart-grsf-d4s.d4science.org
* **(CNR) DONE** spd2.d4sci... Roberto Cirillo
03:02 PM D4Science Infrastructure Upgrade #12149 (Completed): FARM VO upgrade to gCube 4.12: Roberto Cirillo
12:23 PM D4Science Infrastructure Incident #12134 (Closed): Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: Ok, now it works. I close the ticket. Giancarlo Panichi
12:04 PM D4Science Infrastructure Incident #12134: Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: I've found the problem. The ldap users were filtered using the `posixAccount` objectclass. I did not add that object ... Andrea Dell'Amico
11:40 AM D4Science Infrastructure Incident #12134: Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: There is an authentication problem for the svn.d4science user, on dm-pool-manager-* service:
~~~
gcube@dm-pool-ma... Giancarlo Panichi
11:21 AM D4Science Infrastructure Incident #12134: Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: according to @g.panichi@isti.cnr.it the issue isn't solved, either the password is not the previous one (unlikely) or... Massimiliano Assante
11:46 AM D4Science Infrastructure Task #12118: MongoDB: upgrade production cluster to version 3.4: It's also needed to upgrade the volatile area hosted on mongo-p-vol.d4science.org. This instance is running with 3.2.... Roberto Cirillo
09:47 AM D4Science Infrastructure Upgrade #12023 (Completed): /gcube/preprod upgrade to gCube 4.12: Roberto Cirillo
09:14 AM D4Science Infrastructure Incident #12086 (Closed): ssk.parthenos-project.eu disappeared: Achille Felicetti
09:12 AM D4Science Infrastructure Incident #12086: ssk.parthenos-project.eu disappeared: The issue was due to a transfer of domain during which the ssk subdomain was lost. I recreated it and set the CNAME r... Achille Felicetti

Jul 09, 2018

07:57 PM D4Science Infrastructure Incident #12134 (Feedback): Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: I've added the user, with the password used by the dm pool manager.
Andrea Dell'Amico
07:56 PM D4Science Infrastructure Incident #12134 (In Progress): Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: Andrea Dell'Amico
12:51 PM D4Science Infrastructure Incident #12134 (Closed): Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production: The automatic deployment of DataMiner algorithms on production is stuck because in the cose it is used the "svn.d4sci... Massimiliano Assante
06:18 PM D4Science Infrastructure Task #11333 (Closed): Reconfigure jenkins-dnet.d4science.org to authenticate against ldap.d4science.org: Andrea Dell'Amico
06:17 PM D4Science Infrastructure Task #11333 (In Progress): Reconfigure jenkins-dnet.d4science.org to authenticate against ldap.d4science.org: Done. We should try to use ldap groups to enlist the authorized users. Andrea Dell'Amico
04:26 PM D4Science Infrastructure Incident #12086: ssk.parthenos-project.eu disappeared: Any news? The certificate is going to expire in three weeks, if there are no plans to restore `ssk.parthenos-project.... Andrea Dell'Amico
03:04 PM D4Science Infrastructure Incident #12124 (Closed): Sth wrong with user leonardo.candela and AGINFRA+ Gateway VREs: It seems the issue was related to the fact the the user had too many VREs associated to his account (138). Reducing t... Massimiliano Assante
11:05 AM D4Science Infrastructure Incident #12124 (In Progress): Sth wrong with user leonardo.candela and AGINFRA+ Gateway VREs: Massimiliano Assante
11:01 AM D4Science Infrastructure Incident #12124 (Closed): Sth wrong with user leonardo.candela and AGINFRA+ Gateway VREs: Only in the gateway reported in the subject the user leonardo.candela has the following exception
~~~
VM630:1 ... Massimiliano Assante
02:42 PM D4Science Infrastructure VM Creation #12053 (Closed): Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: The SBD catalogue seems work in all scopes Francesco Mangiacrapa
01:17 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: Done. The scopes are now:
~~~
/d4science.research-infrastructures.eu/SoBigData
/d4science.research-infrastructur... Andrea Dell'Amico
12:01 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: I just added the scope to the list in the ansible variables. Let me know when I can reconfigure the connector.
Andrea Dell'Amico
10:44 AM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: Thanks @tommaso.piccioli@isti.cnr.it and @andrea.dellamico@isti.cnr.it now the catalogue works fine at https://sobigd... Francesco Mangiacrapa
10:32 AM D4Science Infrastructure Upgrade #12112 (Completed): D4Science Preprod Gateway upgrade to gCube 4.12.0: The preproduction portal is updated to gCube 4.12, @mariaantonietta.digirolamo@eng.it could you set up the functional... Massimiliano Assante

Jul 07, 2018

07:03 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: I restarted the connnector container in this moment, if you can check it... Tommaso Piccioli
05:10 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: I fixed the redirection yesterday. About the missing scope the only action I know is a restart of the container but I... Andrea Dell'Amico
03:21 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: The CkanConnector seems undeployed (is missing) in that scope (/d4science.research-infrastructures.eu/SoBigData/Resou... Francesco Mangiacrapa
08:25 AM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net: I cannot access the catalogue anymore. I attached an image reporting the error Pasquale Pagano

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