D4Science Infrastructure

Aug 25, 2016

04:34 PM Task #4879 (Closed): Re-harvesting of FAO Geonetwork products

Is it possible to re-harvest the FAO Geonetwork FIGIS products so they appear in the iMarine catalogue (https://i-mar... Emmanuel Blondel

01:20 PM Incident #4878 (Closed): Workspace tree not displaying user's name

The WS displays "undefined" instead of the user's name in the right-hand-side tree. Please, see the attachment. Gianpaolo Coro

01:11 PM Incident #4876 (Closed): Email Notification to VRE-Managers sent twice (three times) sometimes

I was able to reproduce the problem in development by clicking more than once on the accept invite button, each time ... Massimiliano Assante

12:40 PM Incident #4876 (In Progress): Email Notification to VRE-Managers sent twice (three times) sometimes

Massimiliano Assante

12:40 PM Incident #4876 (Closed): Email Notification to VRE-Managers sent twice (three times) sometimes

Whenever a user register to a VRE or accept an Invite the Email Notification to VRE-Managers (the same email) is sent... Massimiliano Assante

Aug 23, 2016

06:16 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Great guys! Gianpaolo Coro

06:14 PM Support #4863 (Closed): Problem with SAI CATCHES_BY_GEAR algorithm

The algorithm was actually working but the execution didn't send back the output because of an extra blank at the end... Paul Taconet

05:38 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

The folder is "Tuna_Atlas" and the subfolder is "catches_by_gear" Paul Taconet

04:05 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Sorry Paul, I don't see a log containing the full path of the produced file. I see only checks that a certain line of... Gianpaolo Coro

03:41 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Thanks for the answer.
I added some cat instructions and repackaged the algorithm, adding a voluntary error. The log... Paul Taconet

04:15 PM Support #4871 (Closed): Making public some selected pages of Redmine Wiki

We need to make "public" (read-only) some selected pages of some Redmine projects (projects have to remain private, w... Leonardo Candela

Aug 22, 2016

03:44 PM Task #4865 (Closed): Installing data analysis machine to develop prototypes

An all-in-one machine is required by the developers of Dataminer algorithms. This machine should be a production Data... Gianpaolo Coro

03:11 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

The switch of the working directory makes the code prone to errors. Please, try to do the following to understand wha... Gianpaolo Coro

03:02 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Thanks for the answer. However, the name of the output seems fine. Here are the last lines of the script:
setwd(w... Paul Taconet

02:57 PM Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Please, refer to the FAQs, because this is a known issue: https://wiki.gcube-system.org/gcube/Statistical_Algorithms_... Gianpaolo Coro

02:30 PM Support #4863 (Closed): Problem with SAI CATCHES_BY_GEAR algorithm

The output folder of the algorithm is empty, while the computation is successful. Everything works fine in R Studio.
Paul Taconet

02:54 PM Support #4856: Invite Friends / inserted name is not copied

I do not want to be pedantic, but this procedure is odd. It "forces" me to make a mistake, and only then it tells me ... Anton Ellenbroek

02:27 PM Support #4856 (Closed): Invite Friends / inserted name is not copied

Anton, perhaps you misread it. The new window asks for your friend name, not the email address. If you open the scree... Massimiliano Assante

02:39 PM Incident #4861 (Closed): https://services.d4science.org home page has a broken link

broken link fixed Massimiliano Assante

02:35 PM Incident #4861 (In Progress): https://services.d4science.org home page has a broken link

Massimiliano Assante

12:38 PM Incident #4861 (Closed): https://services.d4science.org home page has a broken link

The link at the bottom-right expected to point to gCube is "gcube-system.org" ... this is not working, e.g. www shoul... Leonardo Candela

02:25 PM Incident #4862 (In Progress): Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException

Probably due to the new dnscache config, pop.isti.cnr.it is resolved to the external IP, not the 146.48.80.25
I'm ... Tommaso Piccioli

12:50 PM Incident #4862 (Closed): Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException

Since August 8th, the Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException
~~~
com... Massimiliano Assante

11:56 AM Incident #4859 (Closed): Workspace is not working !

The issue is approached in #4860 Leonardo Candela

11:36 AM Incident #4859 (Closed): Workspace is not working !

A generic error message is reported ... it seems there are issues in retrieving the workspace content. Leonardo Candela

11:56 AM Incident #4860 (Closed): Workspace down

restarting the JCR tomcat and the gateway has fixed the problem Massimiliano Assante

11:53 AM Incident #4860: Workspace down

the tomcat instance hosting the jackrabbit repo application went out of memory.
~~~
Aug 22, 2016 11:15:34 AM org.... Massimiliano Assante

11:43 AM Incident #4860 (In Progress): Workspace down

Massimiliano Assante

11:42 AM Incident #4860 (Closed): Workspace down

The Workspace is not working due to the following Home Library exception:
~~~
[PORTAL] 2065226003 [http-bio-9090-... Massimiliano Assante

Aug 19, 2016

06:12 PM Incident #4857: Workspace: if a session expires the user becomes Francesco

Moreover, I just received the following two emails (one per file)
> Dear Leonardo,
> **Test User** added BlueBRI... Leonardo Candela

06:05 PM Incident #4857 (Closed): Workspace: if a session expires the user becomes Francesco

See screenshot( the four files at the bottom).
I upload two files and the system marked them with Francesco as o... Leonardo Candela

Aug 18, 2016

05:12 PM Support #4808 (Closed): Broken links to iMarine gateway in BB and iMarine webpages

The problem was resolved at the beginning of August with an update of the links on the website. Leonardo Candela

05:06 PM Support #4856 (Closed): Invite Friends / inserted name is not copied

If I want to invite a new "Friend" (uh, member maybe?) to a VRE,
I insert an email address, click Send invite, and ... Anton Ellenbroek

Aug 11, 2016

11:45 AM Task #935 (Closed): monitor the d4science and openaire redmine instances

Andrea Dell'Amico

11:44 AM Task #936 (Closed): Add the d4science and openaire redmine instances to nagios

Done. Andrea Dell'Amico

Aug 09, 2016

10:24 AM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org

A reference to a workaround for a problem that affects ubuntu 14.04: https://www.benjaminfleckenstein.name/en/pam-aut... Andrea Dell'Amico

Aug 08, 2016

03:58 PM Support #4855 (Rejected): TabMan; I cannot remove a merged column, but I can after I clone

I merge two columns; year and month with " - " as separator; I cannot remove the resulting column. If I clone the Tab... Anton Ellenbroek

03:55 PM Support #4854 (Closed): TabMan; 'Discover' and 'Map' to codelist

In TabMan, I import a file with tuna captures. One column codes for area, with codes such as "5410120".
In another ... Anton Ellenbroek

11:51 AM Task #4852: Split the ganglia and nagios servers

In the meantime I added 2 GB of RAM and moved the ganglia data to a SAN exported volume.
Andrea Dell'Amico

11:27 AM Task #4852 (Rejected): Split the ganglia and nagios servers

The monitoring load is skyrocketing as we are adding more nagios checks and more services to ganglia.
Create two n... Andrea Dell'Amico

Aug 05, 2016

04:11 PM Support #4850 (Closed): TabMan / Extract Codelist / Cannot unselect all

Giancarlo Panichi

11:44 AM Support #4850 (Feedback): TabMan / Extract Codelist / Cannot unselect all

Note:
1) if you select only the column name with a Mouse-Click(not in the checkbox) it selects only one column and d... Giancarlo Panichi

10:55 AM Task #4847 (Closed): Open CPU timeout is too small

Andrea Dell'Amico

09:51 AM Task #4847: Open CPU timeout is too small

Yes, working fine!
Thank you for the quick fix. Enrico Anello

Aug 04, 2016

05:48 PM Support #4850 (Closed): TabMan / Extract Codelist / Cannot unselect all

If I extract a codelist from a imported CSV, I want to use only a few columns, now by default all columns are selecte... Anton Ellenbroek

05:46 PM Task #4847 (Feedback): Open CPU timeout is too small

Done. Let me know if it works.
Andrea Dell'Amico

05:35 PM Task #4847 (In Progress): Open CPU timeout is too small

I suppose you are referring to the `timelimit.post` options, because the `timelimit.get` option has a timeout of 60... Andrea Dell'Amico

12:25 PM Task #4847: Open CPU timeout is too small

GP is on holiday. I am assigning the ticket to out system admins to see if they can help. Pasquale Pagano

12:12 PM Task #4847 (Closed): Open CPU timeout is too small

We face a problem when we try to run some experiments within the bluebridge infrastructure with openCpu/WPS client be... Enrico Anello

Aug 03, 2016

01:06 PM Task #4126 (Closed): Install Search and ExecutionEngine services on dl19.di.uoa.gr

Kostas Kakaletris

12:25 PM Task #4843 (Closed): Deploy is-sweeper-plugin in preproduction environment

Roberto Cirillo

11:25 AM Task #4843 (In Progress): Deploy is-sweeper-plugin in preproduction environment

Roberto Cirillo

10:50 AM Task #4843 (Closed): Deploy is-sweeper-plugin in preproduction environment

The is-sweeper-plugin should be deployed on
~~~
node76.d4science.org
~~~
Roberto Cirillo

10:38 AM Task #4266 (Closed): Upgrade containers @NKUA with old accounting libraries

Roberto Cirillo

10:28 AM Task #4266 (In Progress): Upgrade containers @NKUA with old accounting libraries

Roberto Cirillo

Aug 02, 2016

05:36 PM Task #4842 (Closed): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org

I changed /etc/ldap.conf but the services use nslcd. I tried to reconfigure it, but the connection to the ldap server... Andrea Dell'Amico

05:01 PM Task #4825 (Closed): New VM for hosting a new istance of mongodb

Roberto Cirillo

11:56 AM Task #4825 (In Progress): New VM for hosting a new istance of mongodb

Roberto Cirillo

12:09 PM Task #3130 (Closed): create a wiki for listening the gcube preprod resources

Roberto Cirillo

12:07 PM Task #4720 (Closed): Deploy FhnManager service in /gcube/preprod

Roberto Cirillo

12:07 PM Task #4718 (Closed): installation of fhn-manager on gcube/preprod

Roberto Cirillo

12:05 PM Task #4265 (Closed): Upgrade containers @CNR with old accounting libraries

Roberto Cirillo

12:04 PM Task #4235 (Closed): remove old accounting consumer service from production infrastructure

Roberto Cirillo

Aug 01, 2016

03:56 PM Task #4834 (Closed): MongoDB: Increase oplog size to 10GB

Roberto Cirillo

03:15 PM Task #4834 (In Progress): MongoDB: Increase oplog size to 10GB

Roberto Cirillo

11:16 AM Task #4834 (Closed): MongoDB: Increase oplog size to 10GB

The oplog size, now setted to 5GB, should be increased to 10GB in order to prevent the secondary member's desynchroni... Roberto Cirillo

01:48 PM Task #4414: New server for the Broker Service

Server rebooted with the new resources.
Let me know what parts need to be contacted directly, because we still nee... Andrea Dell'Amico

Jul 29, 2016

04:58 PM Task #4825: New VM for hosting a new istance of mongodb

Two machines created:
mongo-d-vol.d4science.org for dev
2 vcpu, 2 GB RAM, /data 20 GB
mongo-p-vol.d4science.... Tommaso Piccioli

12:09 PM Task #4825 (Closed): New VM for hosting a new istance of mongodb

It's need to create a new VM with mongodb v 3.2.0 with the following resources:
2 vcpu
2 GB RAM
a dedicated stor... Roberto Cirillo

04:18 PM Task #2261 (Closed): Better check for data.d4science.org availability

Done. Andrea Dell'Amico

03:12 PM Task #2261: Better check for data.d4science.org availability

URI to ckeck the gis-viewer-app availability:
1 - http://data.d4science.org/gis-viewer-app/
2 - http://data.d4scien... Francesco Mangiacrapa

03:39 PM Task #4815 (Closed): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa

Andrea Dell'Amico

03:18 PM Incident #4805 (Closed): SmartGears on dataminer4 fails to save status

this issue will be solved with the release 4.1. Lucio Lelii

02:13 PM Task #4826: Create load balancing for data.d4science.org

No, I don't think so. Pasquale Pagano

01:06 PM Task #4826: Create load balancing for data.d4science.org

As we said, there's no problem as long as the webapps have no state.
We can use the same VM that is acting as load... Andrea Dell'Amico

12:51 PM Task #4826 (Closed): Create load balancing for data.d4science.org

In order to avoid the single point of failure for data.d4science.org I suggest to create a load balancing (with at le... Francesco Mangiacrapa

11:35 AM Task #4824 (Closed): Please delete user frippe12573 from LDAP

Done. Andrea Dell'Amico

11:05 AM Task #4824 (Closed): Please delete user frippe12573 from LDAP

user (Eugenio Trumpy) having username frippe12573 from LDAP Liferay should be delete. Do NOT delete user (Eugenio Tru... Massimiliano Assante

Jul 28, 2016

06:31 PM Task #4806 (Closed): Nagios monitoring for the Couchbase cluster

We now have detailed checks for the two main buckets on ganglia too.
Andrea Dell'Amico

03:46 PM Incident #4805: SmartGears on dataminer4 fails to save status

Any news? Pasquale Pagano

03:46 PM Incident #4789 (Closed): Workspace does not delete Dataminer folder

Pasquale Pagano

03:28 PM Task #3980 (Closed): Configure geonetwork users in order to integrate CKAN

Fabio Sinibaldi

03:12 PM Task #2261 (In Progress): Better check for data.d4science.org availability

Added to nagios. You can see the host details here: http://monitoring.research-infrastructures.eu/cgi-bin/nagios3/sta... Andrea Dell'Amico

11:10 AM Task #2261 (Feedback): Better check for data.d4science.org availability

For uri-resolver check, I've uploaded a jpg on gCube VRE Folder and I've generated the related public link.
You coul... Roberto Cirillo

11:09 AM Task #2261 (In Progress): Better check for data.d4science.org availability

Roberto Cirillo

12:32 PM Upgrade #4329 (Completed): Produce Release Notes for gCube 4.0.0

Massimiliano Assante

12:32 PM Upgrade #4329 (In Progress): Produce Release Notes for gCube 4.0.0

Massimiliano Assante

12:32 PM Upgrade #4327 (Completed): D4Science Gateways upgrade to gCube 4.0

Massimiliano Assante

10:28 AM Task #4820 (Closed): Increase RAM on mongo1.p.d4science.org

I've notice that mongo1-p-d4s.d4science.org have only 500 MB of RAM.
Please, increase the ram to 2 GB. Roberto Cirillo

Jul 27, 2016

07:42 PM Task #4806 (Feedback): Nagios monitoring for the Couchbase cluster

@pieve.alessandro@gmail.com I need some feedback about the checks. I have activated a subset of the available ones. ... Andrea Dell'Amico

06:17 PM Task #4806: Nagios monitoring for the Couchbase cluster

There's also a ganglia plugin available: https://github.com/kozdincer/ganglia-couchbase
Andrea Dell'Amico

10:27 AM Task #4806 (In Progress): Nagios monitoring for the Couchbase cluster

Andrea Dell'Amico

09:52 AM Task #4806: Nagios monitoring for the Couchbase cluster

The credentials are comunicated Alessandro Pieve

07:18 PM Task #4811 (Closed): Update Terms of Use page for each Gateway

Massimiliano Assante

06:33 PM Task #4811 (In Progress): Update Terms of Use page for each Gateway

Massimiliano Assante

02:31 PM Task #4811 (Closed): Update Terms of Use page for each Gateway

Massimiliano Assante

04:57 PM Task #4813 (Closed): Deploy Google Analytics tool for each Gateway

Massimiliano Assante

04:48 PM Task #4813 (In Progress): Deploy Google Analytics tool for each Gateway

Massimiliano Assante

02:34 PM Task #4813 (Closed): Deploy Google Analytics tool for each Gateway

Massimiliano Assante

04:28 PM Task #4812 (Closed): Update Cookies Policy page for each Gateway

Massimiliano Assante

02:32 PM Task #4812 (Closed): Update Cookies Policy page for each Gateway

Massimiliano Assante

03:55 PM Task #4815 (Feedback): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa

On preprod1.d4science.org you now have a db named `infra_dev_db` accessible by the `infra_dev` user from dev2.d4scien... Andrea Dell'Amico

03:45 PM Task #4815 (In Progress): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa

Andrea Dell'Amico

02:57 PM Task #4815 (Closed): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa

In production we had (minor) issues related to the fact that the Liferay DB is no longer on the same portal node. For... Massimiliano Assante

02:34 PM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0

due to changes in a related task Massimiliano Assante

02:31 PM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0

due to changes in a related task Massimiliano Assante

01:56 PM Task #4245 (Closed): Install NetCDF-C on thredds

Netcdf 4.4.0 was already installed on thredds and thredds-d-d4s and the playbook was correct.
I removed the older li... Tommaso Piccioli

01:40 PM Task #4245 (In Progress): Install NetCDF-C on thredds

Netcdf 4.4.0 is required also on thredds.d4science.org, @tommaso.piccioli@isti.cnr.it could you please run the same i... Gianpaolo Coro

11:26 AM Task #4414: New server for the Broker Service

VM prepared to be restarted with 8 vcpu and 16 GB ram. Tommaso Piccioli

11:07 AM Task #4414: New server for the Broker Service

Andrea, can you increase the RAM?
At least 16 GBs are required.
Today the server is used for a demo, so
you s... Michele Artini

11:18 AM Support #4808: Broken links to iMarine gateway in BB and iMarine webpages

the correct link to use is https://i-marine.d4science.org/ Pasquale Pagano

10:24 AM Support #4808 (Closed): Broken links to iMarine gateway in BB and iMarine webpages

The links to the gateway in the websites:
iMarine
https://portal.i-marine.d4science.org/web/guest;jsessionid=0B79... Anton Ellenbroek

11:12 AM Incident #4809 (Closed): Auth service down in SmartArea/SmartBuilding VRE

Roberto Cirillo

11:12 AM Incident #4809 (Resolved): Auth service down in SmartArea/SmartBuilding VRE

I've added the Authorization service resource to SmartBuilding VRE Roberto Cirillo

11:11 AM Incident #4809 (In Progress): Auth service down in SmartArea/SmartBuilding VRE

Roberto Cirillo

11:00 AM Incident #4809 (Closed): Auth service down in SmartArea/SmartBuilding VRE

https://services.d4science.org/group/smartbuilding Massimiliano Assante