D4science

Aug 29, 2016

06:24 PM D4Science Infrastructure Incident #4857 (Closed): Workspace: if a session expires the user becomes Francesco

I'm going to close this incident. A task has been created in order to manage this issue. see #4893 Francesco Mangiacrapa

04:03 PM D4Science Infrastructure Incident #4857: Workspace: if a session expires the user becomes Francesco

this activity is reported as an incident. Please react asap and if an activity is required open a sub ticket of type ... Pasquale Pagano

06:20 PM D4Science Infrastructure Task #4893 (Closed): Workspace enhancements: manage session expired during upload

When an user performs file/s uploading if user session is already expired but session widget is not displayed yet, th... Francesco Mangiacrapa

05:11 PM D4Science Infrastructure Task #4891 (Closed): Create new dev portal based on liferay 6.2 dev2.d4science.org

The current VM dev.d4science.org is based on the old portal, it should be replaced by using the characteristics of de... Massimiliano Assante

05:02 PM D4Science Infrastructure Support #4855 (In Progress): TabMan; I cannot remove a merged column, but I can after I clone

Lucio Lelii

05:02 PM D4Science Infrastructure Support #4855: TabMan; I cannot remove a merged column, but I can after I clone

I just tried the same operation with a test dataset and it worked.
Did you set the dataset as final after the merge ... Lucio Lelii

04:44 PM D4Science Infrastructure Task #4889 (Closed): Deploy DataMiner service on new VRE gCubeApps/ICCAT_BFT-E

The DataMiner service should be available on new VRE gCubeApps/ICCAT_BFT-E
https://i-marine.d4science.org/group/ic... Massimiliano Assante

04:31 PM D4Science Infrastructure Support #4854 (Closed): TabMan; 'Discover' and 'Map' to codelist

No, a codelist in TabMan cannot be discovered automatically.
In timeseries we were using the guesser library implem... Lucio Lelii

04:29 PM D4Science Infrastructure Task #4888 (Closed): Upgrade VRE Modeler Functionality Resource to include Data Miner and RStudio

The VRE Modeler Functionality Resource should include Data Miner and RStudio so that they will be available in the ne... Massimiliano Assante

04:25 PM D4Science Infrastructure Incident #4862: Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException

the Gateway email parser still cannot connect to pop.isti.cnr.it, 995 due to ConnectException Massimiliano Assante

03:37 PM D4Science Infrastructure Incident #4878 (Closed): Workspace tree not displaying user's name

The bug has been fixed and workspace patched version has been deployed in preprod:
https://pre.d4science.org/group/p... Francesco Mangiacrapa

11:10 AM D4Science Infrastructure Incident #4878 (In Progress): Workspace tree not displaying user's name

The problem is due to following exception:
~~~
SEVERE: Exception while dispatching incoming RPC call
com.google.... Francesco Mangiacrapa

02:37 PM D4Science Infrastructure Task #4790: Accept new users / only option is 'Accept All'

FYI; If there is more than one user request, the pop-up with detail info only appear on the first request.
See at... Anton Ellenbroek

02:31 PM D4Science Infrastructure Task #4790: Accept new users / only option is 'Accept All'

Another comment; the pop-up prevents me from clicking the select field. Can the behaviour of the pop-up with the file... Anton Ellenbroek

11:13 AM D4Science Infrastructure Task #4594 (Closed): SmartExecutor services migration from production to pre-production

Roberto Cirillo

11:13 AM D4Science Infrastructure Task #4782 (Closed): Provide ansible playbook for dataminer deployment

Roberto Cirillo

Aug 27, 2016

03:16 PM D4Science Infrastructure Support #4871 (Feedback): Making public some selected pages of Redmine Wiki

AFAIK this is not feasible without a plugin (if any). Luca Frosini

Aug 26, 2016

11:42 AM D4Science Infrastructure Task #4879: Re-harvesting of FAO Geonetwork products

As far as I know the harvesting should be automatic (there might be some delay due to the scheduling interval).
I... Leonardo Candela

Aug 25, 2016

04:34 PM D4Science Infrastructure Task #4879 (Closed): Re-harvesting of FAO Geonetwork products

Is it possible to re-harvest the FAO Geonetwork FIGIS products so they appear in the iMarine catalogue (https://i-mar... Emmanuel Blondel

01:20 PM D4Science Infrastructure Incident #4878 (Closed): Workspace tree not displaying user's name

The WS displays "undefined" instead of the user's name in the right-hand-side tree. Please, see the attachment. Gianpaolo Coro

01:11 PM D4Science Infrastructure Incident #4876 (Closed): Email Notification to VRE-Managers sent twice (three times) sometimes

I was able to reproduce the problem in development by clicking more than once on the accept invite button, each time ... Massimiliano Assante

12:40 PM D4Science Infrastructure Incident #4876 (In Progress): Email Notification to VRE-Managers sent twice (three times) sometimes

Massimiliano Assante

12:40 PM D4Science Infrastructure Incident #4876 (Closed): Email Notification to VRE-Managers sent twice (three times) sometimes

Whenever a user register to a VRE or accept an Invite the Email Notification to VRE-Managers (the same email) is sent... Massimiliano Assante

Aug 23, 2016

06:16 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Great guys! Gianpaolo Coro

06:14 PM D4Science Infrastructure Support #4863 (Closed): Problem with SAI CATCHES_BY_GEAR algorithm

The algorithm was actually working but the execution didn't send back the output because of an extra blank at the end... Paul Taconet

05:38 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

The folder is "Tuna_Atlas" and the subfolder is "catches_by_gear" Paul Taconet

04:05 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Sorry Paul, I don't see a log containing the full path of the produced file. I see only checks that a certain line of... Gianpaolo Coro

03:41 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Thanks for the answer.
I added some cat instructions and repackaged the algorithm, adding a voluntary error. The log... Paul Taconet

04:15 PM D4Science Infrastructure Support #4871 (Closed): Making public some selected pages of Redmine Wiki

We need to make "public" (read-only) some selected pages of some Redmine projects (projects have to remain private, w... Leonardo Candela

Aug 22, 2016

03:44 PM D4Science Infrastructure Task #4865 (Closed): Installing data analysis machine to develop prototypes

An all-in-one machine is required by the developers of Dataminer algorithms. This machine should be a production Data... Gianpaolo Coro

03:11 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

The switch of the working directory makes the code prone to errors. Please, try to do the following to understand wha... Gianpaolo Coro

03:02 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Thanks for the answer. However, the name of the output seems fine. Here are the last lines of the script:
setwd(w... Paul Taconet

02:57 PM D4Science Infrastructure Support #4863: Problem with SAI CATCHES_BY_GEAR algorithm

Please, refer to the FAQs, because this is a known issue: https://wiki.gcube-system.org/gcube/Statistical_Algorithms_... Gianpaolo Coro

02:30 PM D4Science Infrastructure Support #4863 (Closed): Problem with SAI CATCHES_BY_GEAR algorithm

The output folder of the algorithm is empty, while the computation is successful. Everything works fine in R Studio.
Paul Taconet

02:54 PM D4Science Infrastructure Support #4856: Invite Friends / inserted name is not copied

I do not want to be pedantic, but this procedure is odd. It "forces" me to make a mistake, and only then it tells me ... Anton Ellenbroek

02:27 PM D4Science Infrastructure Support #4856 (Closed): Invite Friends / inserted name is not copied

Anton, perhaps you misread it. The new window asks for your friend name, not the email address. If you open the scree... Massimiliano Assante

02:39 PM D4Science Infrastructure Incident #4861 (Closed): https://services.d4science.org home page has a broken link

broken link fixed Massimiliano Assante

02:35 PM D4Science Infrastructure Incident #4861 (In Progress): https://services.d4science.org home page has a broken link

Massimiliano Assante

12:38 PM D4Science Infrastructure Incident #4861 (Closed): https://services.d4science.org home page has a broken link

The link at the bottom-right expected to point to gCube is "gcube-system.org" ... this is not working, e.g. www shoul... Leonardo Candela

02:25 PM D4Science Infrastructure Incident #4862 (In Progress): Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException

Probably due to the new dnscache config, pop.isti.cnr.it is resolved to the external IP, not the 146.48.80.25
I'm ... Tommaso Piccioli

12:50 PM D4Science Infrastructure Incident #4862 (Closed): Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException

Since August 8th, the Gateway email parser cannot connect to pop.isti.cnr.it, 995 due to ConnectException
~~~
com... Massimiliano Assante

11:56 AM D4Science Infrastructure Incident #4859 (Closed): Workspace is not working !

The issue is approached in #4860 Leonardo Candela

11:36 AM D4Science Infrastructure Incident #4859 (Closed): Workspace is not working !

A generic error message is reported ... it seems there are issues in retrieving the workspace content. Leonardo Candela

11:56 AM D4Science Infrastructure Incident #4860 (Closed): Workspace down

restarting the JCR tomcat and the gateway has fixed the problem Massimiliano Assante

11:53 AM D4Science Infrastructure Incident #4860: Workspace down

the tomcat instance hosting the jackrabbit repo application went out of memory.
~~~
Aug 22, 2016 11:15:34 AM org.... Massimiliano Assante

11:43 AM D4Science Infrastructure Incident #4860 (In Progress): Workspace down

Massimiliano Assante

11:42 AM D4Science Infrastructure Incident #4860 (Closed): Workspace down

The Workspace is not working due to the following Home Library exception:
~~~
[PORTAL] 2065226003 [http-bio-9090-... Massimiliano Assante

Aug 19, 2016

06:12 PM D4Science Infrastructure Incident #4857: Workspace: if a session expires the user becomes Francesco

Moreover, I just received the following two emails (one per file)
> Dear Leonardo,
> **Test User** added BlueBRI... Leonardo Candela

06:05 PM D4Science Infrastructure Incident #4857 (Closed): Workspace: if a session expires the user becomes Francesco

See screenshot( the four files at the bottom).
I upload two files and the system marked them with Francesco as o... Leonardo Candela

Aug 18, 2016

05:12 PM D4Science Infrastructure Support #4808 (Closed): Broken links to iMarine gateway in BB and iMarine webpages

The problem was resolved at the beginning of August with an update of the links on the website. Leonardo Candela

05:06 PM D4Science Infrastructure Support #4856 (Closed): Invite Friends / inserted name is not copied

If I want to invite a new "Friend" (uh, member maybe?) to a VRE,
I insert an email address, click Send invite, and ... Anton Ellenbroek

Aug 11, 2016

11:45 AM D4Science Infrastructure Task #935 (Closed): monitor the d4science and openaire redmine instances

Andrea Dell'Amico

11:44 AM D4Science Infrastructure Task #936 (Closed): Add the d4science and openaire redmine instances to nagios

Done. Andrea Dell'Amico

Aug 09, 2016

10:24 AM D4Science Infrastructure Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org

A reference to a workaround for a problem that affects ubuntu 14.04: https://www.benjaminfleckenstein.name/en/pam-aut... Andrea Dell'Amico

Aug 08, 2016

03:58 PM D4Science Infrastructure Support #4855 (Rejected): TabMan; I cannot remove a merged column, but I can after I clone

I merge two columns; year and month with " - " as separator; I cannot remove the resulting column. If I clone the Tab... Anton Ellenbroek

03:55 PM D4Science Infrastructure Support #4854 (Closed): TabMan; 'Discover' and 'Map' to codelist

In TabMan, I import a file with tuna captures. One column codes for area, with codes such as "5410120".
In another ... Anton Ellenbroek

11:51 AM D4Science Infrastructure Task #4852: Split the ganglia and nagios servers

In the meantime I added 2 GB of RAM and moved the ganglia data to a SAN exported volume.
Andrea Dell'Amico

11:27 AM D4Science Infrastructure Task #4852 (Rejected): Split the ganglia and nagios servers

The monitoring load is skyrocketing as we are adding more nagios checks and more services to ganglia.
Create two n... Andrea Dell'Amico

Aug 05, 2016

04:11 PM D4Science Infrastructure Support #4850 (Closed): TabMan / Extract Codelist / Cannot unselect all

Giancarlo Panichi

11:44 AM D4Science Infrastructure Support #4850 (Feedback): TabMan / Extract Codelist / Cannot unselect all

Note:
1) if you select only the column name with a Mouse-Click(not in the checkbox) it selects only one column and d... Giancarlo Panichi

10:55 AM D4Science Infrastructure Task #4847 (Closed): Open CPU timeout is too small

Andrea Dell'Amico

09:51 AM D4Science Infrastructure Task #4847: Open CPU timeout is too small

Yes, working fine!
Thank you for the quick fix. Enrico Anello

Aug 04, 2016

05:48 PM D4Science Infrastructure Support #4850 (Closed): TabMan / Extract Codelist / Cannot unselect all

If I extract a codelist from a imported CSV, I want to use only a few columns, now by default all columns are selecte... Anton Ellenbroek

05:46 PM D4Science Infrastructure Task #4847 (Feedback): Open CPU timeout is too small

Done. Let me know if it works.
Andrea Dell'Amico

05:35 PM D4Science Infrastructure Task #4847 (In Progress): Open CPU timeout is too small

I suppose you are referring to the `timelimit.post` options, because the `timelimit.get` option has a timeout of 60... Andrea Dell'Amico

12:25 PM D4Science Infrastructure Task #4847: Open CPU timeout is too small

GP is on holiday. I am assigning the ticket to out system admins to see if they can help. Pasquale Pagano

12:12 PM D4Science Infrastructure Task #4847 (Closed): Open CPU timeout is too small

We face a problem when we try to run some experiments within the bluebridge infrastructure with openCpu/WPS client be... Enrico Anello

Aug 03, 2016

01:06 PM D4Science Infrastructure Task #4126 (Closed): Install Search and ExecutionEngine services on dl19.di.uoa.gr

Kostas Kakaletris

12:25 PM D4Science Infrastructure Task #4843 (Closed): Deploy is-sweeper-plugin in preproduction environment

Roberto Cirillo

11:25 AM D4Science Infrastructure Task #4843 (In Progress): Deploy is-sweeper-plugin in preproduction environment

Roberto Cirillo

10:50 AM D4Science Infrastructure Task #4843 (Closed): Deploy is-sweeper-plugin in preproduction environment

The is-sweeper-plugin should be deployed on
~~~
node76.d4science.org
~~~
Roberto Cirillo

10:38 AM D4Science Infrastructure Task #4266 (Closed): Upgrade containers @NKUA with old accounting libraries

Roberto Cirillo

10:28 AM D4Science Infrastructure Task #4266 (In Progress): Upgrade containers @NKUA with old accounting libraries

Roberto Cirillo

Aug 02, 2016

05:36 PM D4Science Infrastructure Task #4842 (Closed): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org

I changed /etc/ldap.conf but the services use nslcd. I tried to reconfigure it, but the connection to the ldap server... Andrea Dell'Amico

05:01 PM D4Science Infrastructure Task #4825 (Closed): New VM for hosting a new istance of mongodb

Roberto Cirillo

11:56 AM D4Science Infrastructure Task #4825 (In Progress): New VM for hosting a new istance of mongodb

Roberto Cirillo

12:09 PM D4Science Infrastructure Task #3130 (Closed): create a wiki for listening the gcube preprod resources

Roberto Cirillo

12:07 PM D4Science Infrastructure Task #4720 (Closed): Deploy FhnManager service in /gcube/preprod

Roberto Cirillo

12:07 PM D4Science Infrastructure Task #4718 (Closed): installation of fhn-manager on gcube/preprod

Roberto Cirillo

12:05 PM D4Science Infrastructure Task #4265 (Closed): Upgrade containers @CNR with old accounting libraries

Roberto Cirillo

12:04 PM D4Science Infrastructure Task #4235 (Closed): remove old accounting consumer service from production infrastructure

Roberto Cirillo

Aug 01, 2016

03:56 PM D4Science Infrastructure Task #4834 (Closed): MongoDB: Increase oplog size to 10GB

Roberto Cirillo

03:15 PM D4Science Infrastructure Task #4834 (In Progress): MongoDB: Increase oplog size to 10GB

Roberto Cirillo

11:16 AM D4Science Infrastructure Task #4834 (Closed): MongoDB: Increase oplog size to 10GB

The oplog size, now setted to 5GB, should be increased to 10GB in order to prevent the secondary member's desynchroni... Roberto Cirillo

01:48 PM D4Science Infrastructure Task #4414: New server for the Broker Service

Server rebooted with the new resources.
Let me know what parts need to be contacted directly, because we still nee... Andrea Dell'Amico