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From Apr 08, 2018 to May 07, 2018

May 07, 2018

05:05 PM Task #11732: Please install apa6 CTAN package on ShareLaTex
The apa6 package is available here:
https://www.ctan.org/pkg/apa6
The same functionality are also provided by
...
Luca Frosini
04:05 PM Task #11738 (Closed): Mapping files and URLs
`I gave access permissions from our networks too, let me know if it's OK.`
it's Ok
Miriam Baglioni
03:32 PM Task #11738 (Feedback): Mapping files and URLs
Done. Everything is also indexed.
I gave access permissions from our networks too, let me know if it's OK.
Andrea Dell'Amico
03:19 PM Task #11738 (In Progress): Mapping files and URLs
Andrea Dell'Amico
03:13 PM Task #11738 (Closed): Mapping files and URLs
Please make all the files under the folder `/data/RS` of `dev-openaire.d4science.org` be visible as URLs from
`
de...
Miriam Baglioni
02:43 PM Task #11737 (Closed): Please setup a Nextcloud instance on D4Science
The instance would be needed for the integration between D4Science Workspace and EUDAT B2Drop Massimiliano Assante

May 05, 2018

08:32 PM Task #11733: Dismiss the ganeti cluster: dlib5x, dlib7xx, dlib11x
I just removed the nodes from nagios.
Andrea Dell'Amico
08:18 PM Task #11733 (Closed): Dismiss the ganeti cluster: dlib5x, dlib7xx, dlib11x
Those servers can be retired, nothing is running on them.
Andrea Dell'Amico
08:13 PM Task #11396 (Closed): Move the VM hosted on the Ganeti cluster to the oVirt cluster
ns-cache2 has been moved to oVirt, running unbound instead of bind.
Andrea Dell'Amico

May 04, 2018

07:52 PM Task #11732 (Closed): Please install apa6 CTAN package on ShareLaTex
I just recognized that for a paper submission apa6 CTAN package is needed (i was using apacite)
https://tex.stackex...
Luca Frosini
07:52 PM Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster
ns-cache1.d4science.org has been moved to the oVirt cluster. It's now backed by unbound instead of bind.
I forced it...
Andrea Dell'Amico
03:05 PM Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster
The SMTP relay has been moved on oVirt.
Andrea Dell'Amico
05:13 PM Support #11560 (In Progress): Remove old CDH 5.9 Cluster
The CDH 9 cluster at GARR-CT1 has been destroyed. Andrea Dell'Amico
05:07 PM Task #11728 (Closed): Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration
We chose to disable the check on the swap, it's not so useful in the first place.
I still added a fix to the nrpe co...
Andrea Dell'Amico
04:29 PM Incident #11731 (Closed): geoserver-french-tunaatlas.d4science.org still runs a smartgears with the accounting bug
Done. Andrea Dell'Amico
04:25 PM Incident #11731 (In Progress): geoserver-french-tunaatlas.d4science.org still runs a smartgears with the accounting bug
Andrea Dell'Amico
04:25 PM Incident #11731 (Closed): geoserver-french-tunaatlas.d4science.org still runs a smartgears with the accounting bug
It must be upgraded to the latest release. Andrea Dell'Amico

May 03, 2018

06:19 PM Support #11560: Remove old CDH 5.9 Cluster
Also the Hortonworks cluster should be dismissed. @michele.debonis@isti.cnr.it would you comment here when we are rea... Andrea Dell'Amico
05:45 PM Task #11717 (Closed): please enable context "well-being" to exploratories.d4science.org
Massimiliano Assante
03:39 PM Task #11728: Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration
The ntp configuration has been fixed too. Andrea Dell'Amico
12:28 PM Task #11728: Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration
The check_memory now is handled. On Ubuntu 16.04 a fixed version is installed and used by nrpe.
Andrea Dell'Amico
12:14 PM Task #11728 (In Progress): Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration
Andrea Dell'Amico
11:46 AM Task #11728 (Closed): Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration

* The NTP configuration is more restrictive than in the previous distribution versions, so an explicit configuratio...
Andrea Dell'Amico
02:38 PM VM Creation #11729 (Closed): VM for mongo
Please create a new VM for mongo to replace the instance on playground.
Miriam Baglioni
12:07 PM Support #11706 (Closed): Bulk addition of users to VRE
The page linked by Andrea lists all the accounts and allow to select the ones to be added. There is no facility to pr... Massimiliano Assante

May 02, 2018

08:57 PM Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster
gw1.d4science.org has been created on the ovirt cluster. Andrea Dell'Amico
06:50 PM Task #11396 (In Progress): Move the VM hosted on the Ganeti cluster to the oVirt cluster
Andrea Dell'Amico
06:49 PM Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster
The transition of gw2.d4science.org went well. I've found a couple of parameters that needed a refinement, I've commi... Andrea Dell'Amico
07:08 PM Task #11709: Post configuration of the oVirt manager
I've temporary created the host template.d4science.org with IP 146.48.123.174 to setup a VM that will be used to crea... Andrea Dell'Amico
05:21 PM Task #11709: Post configuration of the oVirt manager
The already available templates for the virtual machines need some refinement. I'm going to create a new template for... Andrea Dell'Amico
05:21 PM Task #11709: Post configuration of the oVirt manager
The firewalld related ansible tasks must be the equivalent of the following commands:
~~~
firewall-cmd --zone=pub...
Andrea Dell'Amico
05:20 PM Task #10988 (Closed): Install oVirt on dlib14x-19x
This can be closed, the remaining tasks pertain to #11709 Andrea Dell'Amico
05:16 PM Task #10988: Install oVirt on dlib14x-19x
The already available templates for the virtual machines need some refinement. I'm going to create a new template for... Andrea Dell'Amico
12:28 PM Task #11717: please enable context "well-being" to exploratories.d4science.org
that's ok, sorry I misunderstood before.
Now we'd need to give permission to @lucapappalardo1984@gmail.com to uplo...
Massimiliano Assante
12:15 PM Task #11717: please enable context "well-being" to exploratories.d4science.org
You have to create it under `/usr/share/nginx/html/`
I could move that directory under `/home/gcube` but I think th...
Andrea Dell'Amico
12:11 PM Task #11717: please enable context "well-being" to exploratories.d4science.org
I did create a well-being folder under tomcat/webapps and put a sample index.html file but it isn't working
https...
Massimiliano Assante
11:59 AM Task #11717 (Feedback): please enable context "well-being" to exploratories.d4science.org
Andrea Dell'Amico
11:58 AM Task #11717 (In Progress): please enable context "well-being" to exploratories.d4science.org
The `/usr/share/nginx/html/` is now writeable by the gcube user. It's the web server document root, so you must creat... Andrea Dell'Amico
11:46 AM Task #11717: please enable context "well-being" to exploratories.d4science.org
Andrea Dell'Amico wrote:
> We are talking about static content, right?
yes.
Massimiliano Assante
11:45 AM Task #11717: please enable context "well-being" to exploratories.d4science.org
We are talking about static content, right?
Andrea Dell'Amico
10:36 AM Task #11717 (Closed): please enable context "well-being" to exploratories.d4science.org
The story for the wellbeing exploratory is ready, we need a some space to upload the webpage to be linked. Will do it... Massimiliano Assante
11:59 AM Task #11718 (Feedback): please enable context "sports-analytics" to exploratories.d4science.org
Andrea Dell'Amico
11:59 AM Task #11718 (In Progress): please enable context "sports-analytics" to exploratories.d4science.org
The `/usr/share/nginx/html/` is now writeable by the gcube user. It's the web server document root, so you must creat... Andrea Dell'Amico
10:44 AM Task #11718 (Closed): please enable context "sports-analytics" to exploratories.d4science.org
The story for the Sports Data Science exploratory is ready, we need a some space to upload the webpage to be linked. ... Massimiliano Assante
11:17 AM Support #11706: Bulk addition of users to VRE
From here: https://services.d4science.org/group/dnet/add-existing-users Andrea Dell'Amico
10:58 AM Support #11706: Bulk addition of users to VRE
What do you mean by manually select one by one each user I want to add? manually select from where? Massimiliano Assante

Apr 30, 2018

04:58 PM Task #11709 (Closed): Post configuration of the oVirt manager
* Install the ansible tasks that customise the hypervisor firewall
* Customise the ovirtmanager firewall in the same...
Andrea Dell'Amico

Apr 27, 2018

04:49 PM Support #11706 (Closed): Bulk addition of users to VRE
We have a list of users that should be added to the dnet VRE to be enabled to use SVN.
Is there a way to do it in b...
Alessia Bardi

Apr 24, 2018

07:24 PM Task #11700 (Closed): DataMiner - check svn status on Production
I forced a `chown -R gcube:gcube /home/gcube/wps_algorithms/algorithms` on all the production dataminers. Andrea Dell'Amico
07:18 PM Task #11700: DataMiner - check svn status on Production
The provisioning of that part always happens as `gcube` user. The relevant tasks are:
~~~
- block:
- name: Ins...
Andrea Dell'Amico
07:10 PM Task #11700 (In Progress): DataMiner - check svn status on Production
I have made a check and it seems that this error is present on many production machines always with the same date.
S...
Giancarlo Panichi
06:11 PM Task #11700 (Closed): DataMiner - check svn status on Production
Someone operated the svn repository as root - again - on that dataminer:
~~~
ls -la /home/gcube/wps_algorithms/al...
Andrea Dell'Amico
05:56 PM Task #11700 (Closed): DataMiner - check svn status on Production
I noticed that the DataMiner service in production are not updating the algorithms.
It looks like there are problems...
Giancarlo Panichi
05:18 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
All the test passed, can we close the ticket ?
Lucio Lelii
03:06 PM VM Creation #11673 (Closed): Create 15 dataminer instances in the PA GARR region
The DMs work! Gianpaolo Coro
03:13 PM VRE #11093 (Released): DOPA spatial planning VRE
Massimiliano Assante

Apr 23, 2018

02:07 PM VM Creation #11673 (In Progress): Create 15 dataminer instances in the PA GARR region
Gianpaolo Coro
02:06 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
@lucio.lelii@isti.cnr.it please, could you run automatic tests?
The GW cluster is dataminer-genericworkers.d4science...
Gianpaolo Coro
12:49 PM VM Creation #11673 (Closed): Create 15 dataminer instances in the PA GARR region
As I received no feedback, I assume that the instances are working correctly. Andrea Dell'Amico
12:51 PM Task #11676 (Closed): Destroy the old generic workers dataminer instances and 5 dataminers in the CT GARR region.
The old genericworkers have been destroyed. Andrea Dell'Amico

Apr 20, 2018

05:33 PM VM Creation #11673 (Feedback): Create 15 dataminer instances in the PA GARR region
Andrea Dell'Amico
05:32 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
Done. Andrea Dell'Amico
04:09 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
I'm recycling 5 current dataminer at garr-ct1:
~~~
ip-90-147-166-24.ct1.garrservices.it hostname=ip-90-147-166-24...
Andrea Dell'Amico
03:02 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
Done. The active genericworkers are now the newly created 10 dataminers on garr-pa1. If there are no objections I'm g... Andrea Dell'Amico
02:55 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
As the tests on the proto generic workers passed, I'm going to replace the current generic workers with those new one... Andrea Dell'Amico
04:00 PM Task #11676: Destroy the old generic workers dataminer instances and 5 dataminers in the CT GARR region.
Instead of destroying the 5 garr-ct1 instances to create another 5 ones, I'm going to install the jar file that sets ... Andrea Dell'Amico
03:53 PM Task #11676: Destroy the old generic workers dataminer instances and 5 dataminers in the CT GARR region.
I shut down the old GARR genericworkers. The instances will be definitely removed when I'll have the confirmation tha... Andrea Dell'Amico
03:26 PM Task #11676 (In Progress): Destroy the old generic workers dataminer instances and 5 dataminers in the CT GARR region.
dataminer3-genericworkers.d4science.org can be dismissed.
Andrea Dell'Amico
02:54 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
Thanks. Would you open a task that has the goal of automating these tests? I hope to be able to create regular images... Andrea Dell'Amico
02:50 PM VM Creation #11671 (Closed): Create 6 dataminer instances that will behave as generic workers
All tests passed. I have done detailed inspection of the logs during the computations. It works well. Gianpaolo Coro
02:20 PM Task #11221 (Closed): update intro text in EcoEvo catalogue
Francesco Mangiacrapa
11:14 AM Support #11670 (Closed): PAIM VRE web-app unable to process the shapefile
The algorithm is now working properly. Further control and a small fix have been added on shapefiles field names. Emmanuel Blondel
10:01 AM Support #11670 (In Progress): PAIM VRE web-app unable to process the shapefile
I'm going to assist Debhasish on this. The web-app so far was working with custom shapefiles we used in FAO, and the ... Emmanuel Blondel
09:57 AM Support #11670: PAIM VRE web-app unable to process the shapefile
Hi @debhasish.bhakta@grida.no, as suggested by Roberto seems to be missing in your call http the parameter:
* ser...
Giancarlo Panichi
09:36 AM Support #11670: PAIM VRE web-app unable to process the shapefile
I am trying with a zip shapefile (file attached) by selecting NAME as an input parameter and the process fail with 50... Debhsish Bhakta

Apr 19, 2018

11:10 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
The 10 dataminer are ready. When we have the confirm that the proto ones are good, I'll add to the load balancer and ... Andrea Dell'Amico
05:13 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
I'm having some dns-related failures on the GARR nodes, some hosts aren't completely deployed yet.
Andrea Dell'Amico
01:35 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
The provisioning is running. Andrea Dell'Amico
04:57 PM Support #11670: PAIM VRE web-app unable to process the shapefile
From your stacktrace seems that the service parameter is missing. Please, could you check if the service parameter is... Roberto Cirillo
04:44 PM Support #11670 (Feedback): PAIM VRE web-app unable to process the shapefile
Please @debhasish.bhakta@grida.no , can you give us more information about the http call that you are doing from the ... Giancarlo Panichi
04:37 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
Done. Andrea Dell'Amico
04:29 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
Gianpaolo Coro wrote:
> OK, great! I will do user tests just after automatic tests are passed.
>
> @lucio.lelii@...
Andrea Dell'Amico
04:24 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
OK, great! I will do user tests just after automatic tests are passed.
@lucio.lelii@isti.cnr.it could you please ...
Gianpaolo Coro
04:20 PM VM Creation #11671 (Feedback): Create 6 dataminer instances that will behave as generic workers
OK. I changed the jar files, the VM are restarting. Does some test exist, or I'm supposed to put them into the haprox... Andrea Dell'Amico
03:59 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
the 1.5.3 version has maxcomputation=4 the 1.5.4 version has the maxcomputation=1 the two jars are compatible, the on... Lucio Lelii
02:06 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
I just opened the `dataminer-1.5.3-4.12.0-164695.jar` file and `templates/setup.cfg` has `maxcomputations=4`. @lucio.... Andrea Dell'Amico

Apr 18, 2018

07:20 PM VM Creation #11673: Create 15 dataminer instances in the PA GARR region
We do not have enough resources in the PA region for 15 instances. I'm activating 10 instances, 5 more can be activat... Andrea Dell'Amico
07:05 PM VM Creation #11673 (In Progress): Create 15 dataminer instances in the PA GARR region
Andrea Dell'Amico
02:21 PM VM Creation #11673 (Closed): Create 15 dataminer instances in the PA GARR region
To be used as generic workers Andrea Dell'Amico
06:51 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
I was ready to change the dataminer jar, but the dataminer war that was just installed report a different jar file. T... Andrea Dell'Amico
03:41 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
The VMs have been created, provisioning is running.
Andrea Dell'Amico
02:59 PM VM Creation #11671: Create 6 dataminer instances that will behave as generic workers
dataminer0-gw-proto.d4science.org 146.48.123.167
dataminer1-gw-proto.d4science.org 146.48.123.168
dataminer2-gw-pro...
Andrea Dell'Amico
02:51 PM VM Creation #11671 (In Progress): Create 6 dataminer instances that will behave as generic workers
Andrea Dell'Amico
12:59 PM VM Creation #11671 (Closed): Create 6 dataminer instances that will behave as generic workers
They have to run on the GARR hypervisors because of the memory requirements. Andrea Dell'Amico
04:17 PM Task #9720 (Closed): Provide a java script for transferring scopes from a resource to another
This script has been implemented as Java application but it invokes the registry service instead of resource-manager ... Roberto Cirillo
03:41 PM Task #11674 (Closed): nlp-d.dev.d4science.org: change container name to the new ALIAS
Roberto Cirillo
02:48 PM Task #11674 (In Progress): nlp-d.dev.d4science.org: change container name to the new ALIAS
Roberto Cirillo
02:30 PM Task #11674 (Closed): nlp-d.dev.d4science.org: change container name to the new ALIAS
It's needed to change the container name from nlp-d.dev.d4science.org to nlp1.d4science.org
and configure letsencryp...
Roberto Cirillo
03:10 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
Pasquale Pagano wrote:
> people more informed than me can explain better.
>
> What I understood is that we need ...
Andrea Dell'Amico
02:59 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
people more informed than me can explain better.
What I understood is that we need 4 proxy backend, 2 for the pro...
Pasquale Pagano
02:42 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
Pasquale Pagano wrote:
> what do you mean?
> The proxies will provide access to a static set of servers.
I did ...
Andrea Dell'Amico
02:35 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
what do you mean?
The proxies will provide access to a static set of servers.
Pasquale Pagano
12:50 PM Task #11639 (In Progress): Add to the DM Proto cluster at least three new DM instances
Gianpaolo Coro wrote:
> In a meeting today we have agreed to have the following configurations:
>
> 2 - there wil...
Andrea Dell'Amico
02:34 PM Task #11676 (Closed): Destroy the old generic workers dataminer instances and 5 dataminers in the CT GARR region.
To be dismissed:
* The old proto generic worker, dataminer3-genericworkers.d4science.org
* The GARR genericworker...
Andrea Dell'Amico
02:17 PM Task #10988: Install oVirt on dlib14x-19x
due to changes in a related task Andrea Dell'Amico
02:17 PM Task #10240: Install a modern virtualisation framework to host the 'corporate' services
due to changes in a related task Andrea Dell'Amico
01:00 PM Task #10240: Install a modern virtualisation framework to host the 'corporate' services
due to changes in a related task Andrea Dell'Amico
02:15 PM Incident #11632: orientdb01-d4s receives a huge number of connection
I found a potential bug in the resource registry but it should occur in the actual situation. Anyway, I added an addi... Luca Frosini
10:57 AM Incident #11632: orientdb01-d4s receives a huge number of connection
@andrea.dellamico@isti.cnr.it I suspect a bug in Resource Registry. I already investigated the port type to interact ... Luca Frosini
11:55 AM Task #11664 (Closed): Add ALIAS to nlp-d.dev.d4science.org and nlp-hub-d.dev.d4science.org
After I confirm the change in the DNS management interface there's nothing I can do. You have to wait for the DNS zon... Andrea Dell'Amico
10:01 AM Task #11664 (In Progress): Add ALIAS to nlp-d.dev.d4science.org and nlp-hub-d.dev.d4science.org
I'm still not able to connect to the host by CNAME:
~~~
TASK [Gathering Facts] **********************************...
Roberto Cirillo
11:15 AM Support #11670 (Closed): PAIM VRE web-app unable to process the shapefile
**The upload shapefile module of PAIM VRE web-app unable to process the shapefile.
I am suspecting the issue may be...
Debhsish Bhakta
10:54 AM VM Creation #11662 (Closed): New development machine for NLP Hub
Yes, yesterday I have understood that the missing request for user name and password when accessing the application w... Gianpaolo Coro
10:44 AM VM Creation #11662: New development machine for NLP Hub
@gianpaolo.coro@isti.cnr.it can this ticket be closed? Roberto Cirillo

Apr 17, 2018

07:41 PM Task #11664 (Closed): Add ALIAS to nlp-d.dev.d4science.org and nlp-hub-d.dev.d4science.org
The CNAMEs have been created.
Andrea Dell'Amico
07:38 PM Task #11664 (In Progress): Add ALIAS to nlp-d.dev.d4science.org and nlp-hub-d.dev.d4science.org
That's ugly. They were requested as dev VMs.
@roberto.cirillo@isti.cnr.it Please move them in the ansible invent...
Andrea Dell'Amico
10:58 AM Task #11664 (Closed): Add ALIAS to nlp-d.dev.d4science.org and nlp-hub-d.dev.d4science.org
The VM above are running in production environment with a development names. If possible, I suggest to give a product... Roberto Cirillo
06:12 PM VM Creation #11662: New development machine for NLP Hub
the xml seems to be ok. I have no access to this machine. I have to check the logs. can you give me access? Lucio Lelii
06:05 PM VM Creation #11662: New development machine for NLP Hub
I have placed a gcube-app.xml file under the WEB-INF folder, which contains this:
~~~
<application mode='online'>...
Gianpaolo Coro
05:55 PM VM Creation #11662: New development machine for NLP Hub
As requested by @erico.perrone@isti.cnr.it and @gianpaolo.coro@isti.cnr.it this VM, for the moment, will be managed m... Roberto Cirillo
05:52 PM VM Creation #11662: New development machine for NLP Hub
sorry, forget my previous comment, thought it was about the production nlp hub. Anyway the war on the ftp server is u... Massimiliano Assante
05:40 PM VM Creation #11662: New development machine for NLP Hub
OK perfect. Now we can use http://nlp-d.dev.d4science.org/hub/ as baseline for tests with tokens. Gianpaolo Coro
05:37 PM VM Creation #11662: New development machine for NLP Hub
This morning I did update the service and restarted the node, after that I tested it and it was working fine. Think a... Massimiliano Assante
05:30 PM VM Creation #11662: New development machine for NLP Hub
The nlp application installed on the machine by the provisioning scripts seems not to be working.
It should answer l...
Gianpaolo Coro
10:48 AM VM Creation #11662 (Feedback): New development machine for NLP Hub
The VM is up and running Roberto Cirillo
10:14 AM VM Creation #11662: New development machine for NLP Hub
Thanks @andrea.dellamico@isti.cnr.it. I've talked with @gianpaolo.coro@isti.cnr.it yesterday, proto seen as a VM runn... Roberto Cirillo
03:46 PM Support #11666 (Closed): nlp-d.dev.d4science.org: the tomcat doesn't start correctly
The interface went up correctly after a reboot. Andrea Dell'Amico
03:44 PM Support #11666: nlp-d.dev.d4science.org: the tomcat doesn't start correctly
The loopback interface was down, I don't know why.
I'm trying a reboot to verify that it starts correctly.
Andrea Dell'Amico
03:30 PM Support #11666 (In Progress): nlp-d.dev.d4science.org: the tomcat doesn't start correctly
Andrea Dell'Amico
03:23 PM Support #11666 (Closed): nlp-d.dev.d4science.org: the tomcat doesn't start correctly
I see the exception below on catalina.log when the tomcat is started but nothing is running on port 9000 and the /et... Roberto Cirillo

Apr 16, 2018

07:55 PM VM Creation #11662: New development machine for NLP Hub
The VM is up, @roberto.cirillo@isti.cnr.it has root access. Andrea Dell'Amico
07:43 PM VM Creation #11662 (In Progress): New development machine for NLP Hub
hostname and IP address: nlp-d.dev.d4science.org. IN A 146.48.122.108
Andrea Dell'Amico
07:40 PM VM Creation #11662: New development machine for NLP Hub
What's a **proto** smartgears installation, anyway? Andrea Dell'Amico
05:42 PM VM Creation #11662 (Closed): New development machine for NLP Hub
We need a machine similar to nlp.d4science.org (#11492) for development purposes. After the provisioning of the VM, a... Gianpaolo Coro
07:34 PM Task #10988: Install oVirt on dlib14x-19x
We have completed the storage setup, i guess we are ready to deploy virtual machines there.
Andrea Dell'Amico
04:52 PM Incident #11660 (Closed): Workspace is extremely slow, it keeps loading indefinitely.
Massimiliano Assante
03:50 PM Incident #11660 (Closed): Workspace is extremely slow, it keeps loading indefinitely.
After more than 30 seconds the workspace is still now rendering and keep saying loading. Massimiliano Assante
04:19 PM Task #11659 (Closed): Please add nodes of workspace-repository on System Monitoring
Just added workspace-repository-prod1.d4science.org and workspace-repository-pg.d4science.org.
workspace-repository...
Andrea Dell'Amico
04:17 PM Task #11659 (In Progress): Please add nodes of workspace-repository on System Monitoring
Andrea Dell'Amico
03:39 PM Task #11659 (Closed): Please add nodes of workspace-repository on System Monitoring
The following 3 VMs should be added to Grafana.
* workspace-repository-prod1
* workspace-repository-prod
* The n...
Massimiliano Assante

Apr 14, 2018

07:08 PM Task #11600 (Closed): Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
Done. The solr VM is now running with 6GB of RAM.
Andrea Dell'Amico

Apr 13, 2018

07:13 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
Andrea Dell'Amico wrote:
> Gianpaolo Coro wrote:
> > 4 - the old GenericWorker will be replaced by multi-core DMs h...
Pasquale Pagano
05:38 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
Gianpaolo Coro wrote:
> 4 - the old GenericWorker will be replaced by multi-core DMs having internal jobs queue = 1
...
Andrea Dell'Amico
05:23 PM Task #11639: Add to the DM Proto cluster at least three new DM instances
In a meeting today we have agreed to have the following configurations:
1 - each VRE will have two proxies: DataMi...
Gianpaolo Coro
12:08 PM Task #11639 (Closed): Add to the DM Proto cluster at least three new DM instances
Please add tot he DM Proto cluster at least three new DM instances.
Please open subtickets for the creation of the...
Pasquale Pagano
01:05 PM Incident #11632 (Closed): orientdb01-d4s receives a huge number of connection
Done.
Can you share what the problem was?
Andrea Dell'Amico
12:32 PM Incident #11632: orientdb01-d4s receives a huge number of connection
social-indexer.d4science.org restarted. @andrea.dellamico@isti.cnr.it can you restart nagios? Thanks a lot Luca Frosini
10:06 AM Incident #11632: orientdb01-d4s receives a huge number of connection
Luca Frosini wrote:
> @andrea.dellamico@isti.cnr.it or @roberto.cirillo@isti.cnr.it can you provide me access to soc...
Roberto Cirillo
09:35 AM Incident #11632: orientdb01-d4s receives a huge number of connection
@andrea.dellamico@isti.cnr.it or @roberto.cirillo@isti.cnr.it can you provide me access to social-indexer.d4science.org Luca Frosini
11:56 AM Task #6307 (Feedback): Migrate preproduction infrastructure nodes to Java 8
Massimiliano Assante
11:55 AM Task #6307 (In Progress): Migrate preproduction infrastructure nodes to Java 8
Massimiliano Assante

Apr 12, 2018

08:50 PM Incident #11632: orientdb01-d4s receives a huge number of connection
I stopped the nagios check. The nagios check did not use any token btw, that URL should be public.
Andrea Dell'Amico
08:44 PM Incident #11632: orientdb01-d4s receives a huge number of connection
Before restarting the instance, I also deleted some structure so the token the application has already obtained are n... Luca Frosini
07:30 PM Incident #11632: orientdb01-d4s receives a huge number of connection
The check is currently failing with `connection reset by peer`, it's behaving this way since a couple of days.
Andrea Dell'Amico
07:27 PM Incident #11632: orientdb01-d4s receives a huge number of connection
It's the nagios check. I don't know how the connectios aren't closed, it's the same http call since months: orientdb... Andrea Dell'Amico
07:11 PM Incident #11632 (Closed): orientdb01-d4s receives a huge number of connection
From logs I found:
~~~
2018-04-12 18:29:28:484 WARNI Reached maximum number of concurrent connections (max=1000, ...
Luca Frosini
05:53 PM Support #11605 (Closed): Set DataMiner queue length to 1
Gianpaolo Coro
05:30 PM Support #11605: Set DataMiner queue length to 1
Gianpaolo Coro wrote:
> Thank you. Given the way people are going to use the services, I think we will need to have ...
Andrea Dell'Amico
05:28 PM Support #11605: Set DataMiner queue length to 1
Thank you. Given the way people are going to use the services, I think we will need to have the standard DataMiners r... Gianpaolo Coro
04:42 PM Support #11605: Set DataMiner queue length to 1
(rollback completed)
Andrea Dell'Amico
04:41 PM Support #11605: Set DataMiner queue length to 1
The rollback is running.
Gianpaolo Coro wrote:
> As I have discussed with Andrea, this patch should be rolled-bac...
Andrea Dell'Amico
04:32 PM Support #11605: Set DataMiner queue length to 1
As I have discussed with Andrea, this patch should be rolled-back since there are algorithms that invoke themselves, ... Gianpaolo Coro
02:30 PM Support #11605 (Feedback): Set DataMiner queue length to 1
Done. Andrea Dell'Amico
02:19 PM Support #11605: Set DataMiner queue length to 1
The services in dev restarted correctly, I'm starting rolling out in production. Andrea Dell'Amico
01:01 PM Support #11605: Set DataMiner queue length to 1
Can anybody check dataminer1-d-d4s.d4science.org? If I do not hear anything back in an hour, I'll start updating the ... Andrea Dell'Amico
12:39 PM Support #11605 (In Progress): Set DataMiner queue length to 1
We have the artifact. I'm going to install it on the dev dataminers first.
Andrea Dell'Amico
05:42 PM Task #1659 (Closed): Federated and Classic Login cannot "live" together
Ciro Formisano
02:38 PM Task #11368 (Closed): Recolecta VM
Andrea Dell'Amico
02:38 PM Task #11442 (Closed): Copy data_dir to new instances
Andrea Dell'Amico
02:38 PM Task #11522 (Closed): Provide a cronjob for removing old access.log files
Andrea Dell'Amico
02:37 PM Task #11446 (Closed): Update Development Geoserver to 2.10.5
Andrea Dell'Amico
02:35 PM VM Creation #11482 (Closed): Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org
Andrea Dell'Amico
02:34 PM Task #6307: Migrate preproduction infrastructure nodes to Java 8
@roberto.cirillo@isti.cnr.it what't the preproduction status? Can we mark this task as done?
Andrea Dell'Amico
02:33 PM Task #6308 (Closed): Migrate production infrastructure nodes to Java 8
The migration is complete (since a while).
Andrea Dell'Amico
12:27 PM Task #11604 (Closed): Please allow pc-frosini.isti.cnr.it to comunicate with ckan-d-d4s.d4science.org
I confirm that I can connect to CKAN from my host Luca Frosini
12:16 PM Task #11604 (Feedback): Please allow pc-frosini.isti.cnr.it to comunicate with ckan-d-d4s.d4science.org
Done. Andrea Dell'Amico
12:15 PM Task #11604 (In Progress): Please allow pc-frosini.isti.cnr.it to comunicate with ckan-d-d4s.d4science.org
Andrea Dell'Amico
12:04 PM Task #11587 (Closed): Check resource-registry access port-type to get instances
The last version required an upgrade to database to make the registry working. I did it, and now seems working Luca Frosini
09:59 AM Task #11600: Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
Hi @andrea.dellamico@isti.cnr.it,
the harvesting was completed, please feel you free to restart the Solr VM when y...
Francesco Mangiacrapa

Apr 11, 2018

05:05 PM Task #11614 (Closed): Create two new backup serviceEndpoint for ckan catalogue
Now the backup resources match the scopes of the original resources. This operation has been executed by a script. Roberto Cirillo
03:26 PM Task #11614 (In Progress): Create two new backup serviceEndpoint for ckan catalogue
Roberto Cirillo
03:25 PM Task #11614: Create two new backup serviceEndpoint for ckan catalogue
I've added "bb" to the "_bck" suffix in order to distinguishing them from the other ckan instances. The backup resour... Roberto Cirillo
02:44 PM Task #11614 (Closed): Create two new backup serviceEndpoint for ckan catalogue
In order to provide a way to perform the ckan catalogue context switch, it's needed to create two new "backup" servic... Roberto Cirillo
04:20 PM Support #11605: Set DataMiner queue length to 1
Please let me know when it's ready and post the maven coordinates, so that I can put in place an ad hoc playbook. Andrea Dell'Amico
11:56 AM Support #11605: Set DataMiner queue length to 1
I'm building, via etics, the dataminer jar with the modification needed. When it will be ready we need to replace the... Lucio Lelii
10:29 AM Support #11605: Set DataMiner queue length to 1
It is in src/main/resources inside the dataminer jar, It cannot be changed in this way Lucio Lelii
03:20 PM Task #11615 (Closed): Restore original context of ckan data catalogue on TabularDataLab VRE
Roberto Cirillo
02:58 PM Task #11615 (In Progress): Restore original context of ckan data catalogue on TabularDataLab VRE
Roberto Cirillo
02:52 PM Task #11615 (Closed): Restore original context of ckan data catalogue on TabularDataLab VRE
Now TabularDataLab points to ckan_bb1 instance.
It's needed to replace the original resources of ckan catalogue on T...
Roberto Cirillo
12:39 PM Task #11587 (In Progress): Check resource-registry access port-type to get instances
Luca Frosini
12:20 PM Task #11613 (Closed): Disable network access of socialnetworking1.d4science.org (146.48.123.21) to Cassandra Dev Cluster
TCP in and out connections between socialnetworking1.d4science.org (146.48.123.21) to Cassandra Dev Cluster are dropp... Tommaso Piccioli
11:56 AM Task #11613 (Closed): Disable network access of socialnetworking1.d4science.org (146.48.123.21) to Cassandra Dev Cluster
Related to the incident #11597. We suspect that the SocialNetworking service switches to dev cassandra cluster during... Massimiliano Assante

Apr 10, 2018

08:06 PM Task #11586 (Closed): Please remove orientdb from startup services on orientdb02-d4s.d4science.org and orientdb03-d4s.d4science.org
Andrea Dell'Amico
08:06 PM Task #11586: Please remove orientdb from startup services on orientdb02-d4s.d4science.org and orientdb03-d4s.d4science.org
I changed the playbook and the inventory for the production orientdb servers so that the service on the the 02 and 03... Andrea Dell'Amico
07:45 PM Support #11605: Set DataMiner queue length to 1
@lucio.lelii@isti.cnr.it could you help us, please? Gianpaolo Coro
07:40 PM Support #11605: Set DataMiner queue length to 1
Where is it?
~~~
root@dataminer1-d-d4s:/home/gcube/tomcat/webapps/wps# find . -name setup.cfg
root@dataminer1-d-...
Andrea Dell'Amico
05:42 PM Support #11605 (Closed): Set DataMiner queue length to 1
In the templates/setup.cfg file on the DataMiner, the maxcomputations parameter should be changed to 1 instead of 4. ... Gianpaolo Coro
06:51 PM Task #10988: Install oVirt on dlib14x-19x
We abandoned the bond configuration on the dlib1[5:7]x servers and after that the setup went well.
And about the f...
Andrea Dell'Amico
04:00 PM Task #11604 (Closed): Please allow pc-frosini.isti.cnr.it to comunicate with ckan-d-d4s.d4science.org
Running GRSF service on my machine I obtain the following exception:
~~~
org.postgresql.util.PSQLException: Conne...
Luca Frosini
02:20 PM Task #4243: Migrate SSL certificate from GARR/TERENA to Let's Encrypt
I get a message regarding problems with the certificate on the svn server:
~~~
alessia@nb-bardi:~/workspace45/dne...
Alessia Bardi
02:14 PM Task #11600: Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
Andrea Dell'Amico wrote:
> I just freed some RAM on the hypervisor. @francesco.mangiacrapa@isti.cnr.it Let me know ...
Francesco Mangiacrapa
12:46 PM Task #11600: Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
I just freed some RAM on the hypervisor. @francesco.mangiacrapa@isti.cnr.it Let me know when I can restart the solr ... Andrea Dell'Amico
12:18 PM Task #11600 (In Progress): Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
I'm going to add 1GB anyway, but I first need to reclaim some space on the hypervisor. I can do it in the evening.
Andrea Dell'Amico
11:59 AM Task #11600: Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
Lately Harvesting of iMarine (in general of more metadata from GN) is very slow. I don't know if it is due to solr in... Francesco Mangiacrapa
11:51 AM Task #11600: Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
The VM is using almost all the available RAM but barely any swap space, why are you asking for more memory? Andrea Dell'Amico
11:49 AM Task #11600: Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
You are talking about RAM, correct?
Andrea Dell'Amico
11:45 AM Task #11600 (Closed): Increase memory on ckan-solr-d4s.d4science.org (Solr indexes)
We need to increase the RAM for Solr indexes on https://ckan-solr-d4s.d4science.org/solr/#/
At the moment the 97.9% ...
Francesco Mangiacrapa
12:40 PM Task #11595 (Closed): Duplicated tokens on SmartGears/container.xml
ok thanks Luca Frosini
11:45 AM Task #11595 (Feedback): Duplicated tokens on SmartGears/container.xml
Andrea Dell'Amico
11:45 AM Task #11595 (In Progress): Duplicated tokens on SmartGears/container.xml
It's a known effect of the changes on the script that manages the scopes. Until I find the time to completely rewrite... Andrea Dell'Amico
09:53 AM Task #11595 (Closed): Duplicated tokens on SmartGears/container.xml
Every time I try to upgrade catalogue-ws-d-d4s container.xml contains two entry of each scope (the token is the same)... Luca Frosini
12:24 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
Massimiliano Assante wrote:
> Thanks, it works now. When is the SSL certificate (non self signed i mean) going to be...
Andrea Dell'Amico
10:48 AM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
The Nlphub on production is available at http://nlp.d4science.org/hub , soon over HTTPS too. Massimiliano Assante
10:37 AM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
Thanks, it works now. When is the SSL certificate (non self signed i mean) going to be available ? Massimiliano Assante
12:15 PM Support #11596 (Closed): CKAN BB1 Harvesting of GN iMarine failed: due to (DatabaseError) SSL SYSCALL error: EOF detect
The shared memory has been increased to 3GB.
Andrea Dell'Amico
12:07 PM Support #11596: CKAN BB1 Harvesting of GN iMarine failed: due to (DatabaseError) SSL SYSCALL error: EOF detect
postgres now is running with 8 GB of ram. For a better job we should also increase the shared memory, now.
Andrea Dell'Amico
12:00 PM Support #11596: CKAN BB1 Harvesting of GN iMarine failed: due to (DatabaseError) SSL SYSCALL error: EOF detect
Andrea Dell'Amico wrote:
> The database is working, but last night it exhausted all the memory so some processes wer...
Francesco Mangiacrapa
11:39 AM Support #11596 (In Progress): CKAN BB1 Harvesting of GN iMarine failed: due to (DatabaseError) SSL SYSCALL error: EOF detect
The database is working, but last night it exhausted all the memory so some processes were killed by the OOM. We shou... Andrea Dell'Amico
10:21 AM Support #11596 (Closed): CKAN BB1 Harvesting of GN iMarine failed: due to (DatabaseError) SSL SYSCALL error: EOF detect
Harvesting of iMarine metadata from GN failed due to database error: sqlalchemy.exc.DatabaseError: (DatabaseError) SS... Francesco Mangiacrapa
11:04 AM Incident #11597 (Closed): SocialNetworking service returns empty list of posts for any VRE
Massimiliano Assante
11:01 AM Incident #11597 (In Progress): SocialNetworking service returns empty list of posts for any VRE
I've tried to restart the container. Please could you retry, now? Roberto Cirillo
10:21 AM Incident #11597 (Closed): SocialNetworking service returns empty list of posts for any VRE
Whatever token of production we use the returned results is always empty no matter the VRE used
for example:
this...
Massimiliano Assante

Apr 09, 2018

07:15 PM Task #4243: Migrate SSL certificate from GARR/TERENA to Let's Encrypt
Andrea Dell'Amico wrote:
> From that list the only missing host seems to be svn.research-infrastructures.eu. Another...
Tommaso Piccioli
04:25 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
Done.
Andrea Dell'Amico
04:21 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
There are a number of contexts that should be enabled (the one corresponding to the servlets of this webapp)
pleas...
Massimiliano Assante
04:05 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
Yes, the DNS servers have problems updating zones to the outside since some weeks. Andrea Dell'Amico
04:02 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
but it works using the VPN (I'm at home) so I suppose it is a matter of minutes to make it working from my home as well. Massimiliano Assante
04:00 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
~~~
This site can’t be reached
nlp.d4science.org’s server IP address could not be found.
Go to http://www.d4scienc...
Massimiliano Assante
03:56 PM VM Creation #11492 (Feedback): Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
The app has been deployed.
Andrea Dell'Amico
03:50 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
Ops. Yes. Andrea Dell'Amico
03:48 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
Andrea Dell'Amico wrote:
> The answer when I run the playbook was:
>
> ~~~
> ***********************************...
Massimiliano Assante
03:42 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
The answer when I run the playbook was:
~~~
*********************************************************************...
Andrea Dell'Amico
03:21 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
you're looking in the wrong place and wrong name:
it is downloadable from http://ftp.d4science.org/apps/hub.war
...
Massimiliano Assante
03:03 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
@massimiliano.assante@isti.cnr.it let me know when it appears, all the other components have been installed.
Andrea Dell'Amico
02:58 PM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
There is no artifact:
~~~
root@ftp:/data/ftp/d4science/www# ls -la nlp
total 4
drwxr-xr-x 2 d4science d4scienc...
Andrea Dell'Amico
02:26 PM VM Creation #11492 (In Progress): Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
hostname and IP address are going to be nlp.d4science.org 146.48.122.59 Andrea Dell'Amico
09:54 AM VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org
The VM is needed urgently by tomorrow at last, it is going to work on production on the scope indicate by Lino, you c... Massimiliano Assante
01:21 PM Task #11591 (Closed): Increase the disk space on ckan-pg-d4s.d4science.org
Also changed the backup script. Now the db list is generated ad each run.
Andrea Dell'Amico
12:31 PM Task #11591: Increase the disk space on ckan-pg-d4s.d4science.org
Added a separate 40 GB file system in /var/lib/pgsql/backups for the pg_dump data. Tommaso Piccioli
12:01 PM Task #11591 (In Progress): Increase the disk space on ckan-pg-d4s.d4science.org
Added 50GB. Andrea Dell'Amico
11:59 AM Task #11591 (Closed): Increase the disk space on ckan-pg-d4s.d4science.org

And reconfigure the backup script to automatically scan the available databases.
Andrea Dell'Amico
 

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