Activity
From Jul 13, 2016 to Aug 11, 2016
Aug 11, 2016
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11:45 AM Task #935 (Closed): monitor the d4science and openaire redmine instances
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11:44 AM Task #936 (Closed): Add the d4science and openaire redmine instances to nagios
- Done.
Aug 09, 2016
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10:24 AM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
- A reference to a workaround for a problem that affects ubuntu 14.04: https://www.benjaminfleckenstein.name/en/pam-aut...
Aug 08, 2016
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03:58 PM Support #4855 (Rejected): TabMan; I cannot remove a merged column, but I can after I clone
- I merge two columns; year and month with " - " as separator; I cannot remove the resulting column. If I clone the Tab...
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03:55 PM Support #4854 (Closed): TabMan; 'Discover' and 'Map' to codelist
- In TabMan, I import a file with tuna captures. One column codes for area, with codes such as "5410120".
In another ... -
11:51 AM Task #4852: Split the ganglia and nagios servers
- In the meantime I added 2 GB of RAM and moved the ganglia data to a SAN exported volume.
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11:27 AM Task #4852 (Rejected): Split the ganglia and nagios servers
- The monitoring load is skyrocketing as we are adding more nagios checks and more services to ganglia.
Create two n...
Aug 05, 2016
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04:11 PM Support #4850 (Closed): TabMan / Extract Codelist / Cannot unselect all
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11:44 AM Support #4850 (Feedback): TabMan / Extract Codelist / Cannot unselect all
- Note:
1) if you select only the column name with a Mouse-Click(not in the checkbox) it selects only one column and d... -
10:55 AM Task #4847 (Closed): Open CPU timeout is too small
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09:51 AM Task #4847: Open CPU timeout is too small
- Yes, working fine!
Thank you for the quick fix.
Aug 04, 2016
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05:48 PM Support #4850 (Closed): TabMan / Extract Codelist / Cannot unselect all
- If I extract a codelist from a imported CSV, I want to use only a few columns, now by default all columns are selecte...
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05:46 PM Task #4847 (Feedback): Open CPU timeout is too small
- Done. Let me know if it works.
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05:35 PM Task #4847 (In Progress): Open CPU timeout is too small
I suppose you are referring to the `timelimit.post` options, because the `timelimit.get` option has a timeout of 60...-
12:25 PM Task #4847: Open CPU timeout is too small
- GP is on holiday. I am assigning the ticket to out system admins to see if they can help.
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12:12 PM Task #4847 (Closed): Open CPU timeout is too small
- We face a problem when we try to run some experiments within the bluebridge infrastructure with openCpu/WPS client be...
Aug 03, 2016
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01:06 PM Task #4126 (Closed): Install Search and ExecutionEngine services on dl19.di.uoa.gr
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12:25 PM Task #4843 (Closed): Deploy is-sweeper-plugin in preproduction environment
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11:25 AM Task #4843 (In Progress): Deploy is-sweeper-plugin in preproduction environment
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10:50 AM Task #4843 (Closed): Deploy is-sweeper-plugin in preproduction environment
- The is-sweeper-plugin should be deployed on
~~~
node76.d4science.org
~~~
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10:38 AM Task #4266 (Closed): Upgrade containers @NKUA with old accounting libraries
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10:28 AM Task #4266 (In Progress): Upgrade containers @NKUA with old accounting libraries
Aug 02, 2016
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05:36 PM Task #4842 (Closed): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
- I changed /etc/ldap.conf but the services use nslcd. I tried to reconfigure it, but the connection to the ldap server...
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05:01 PM Task #4825 (Closed): New VM for hosting a new istance of mongodb
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11:56 AM Task #4825 (In Progress): New VM for hosting a new istance of mongodb
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12:09 PM Task #3130 (Closed): create a wiki for listening the gcube preprod resources
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12:07 PM Task #4720 (Closed): Deploy FhnManager service in /gcube/preprod
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12:07 PM Task #4718 (Closed): installation of fhn-manager on gcube/preprod
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12:05 PM Task #4265 (Closed): Upgrade containers @CNR with old accounting libraries
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12:04 PM Task #4235 (Closed): remove old accounting consumer service from production infrastructure
Aug 01, 2016
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03:56 PM Task #4834 (Closed): MongoDB: Increase oplog size to 10GB
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03:15 PM Task #4834 (In Progress): MongoDB: Increase oplog size to 10GB
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11:16 AM Task #4834 (Closed): MongoDB: Increase oplog size to 10GB
- The oplog size, now setted to 5GB, should be increased to 10GB in order to prevent the secondary member's desynchroni...
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01:48 PM Task #4414: New server for the Broker Service
- Server rebooted with the new resources.
Let me know what parts need to be contacted directly, because we still nee...
Jul 29, 2016
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04:58 PM Task #4825: New VM for hosting a new istance of mongodb
- Two machines created:
mongo-d-vol.d4science.org for dev
2 vcpu, 2 GB RAM, /data 20 GB
mongo-p-vol.d4science.... -
12:09 PM Task #4825 (Closed): New VM for hosting a new istance of mongodb
- It's need to create a new VM with mongodb v 3.2.0 with the following resources:
2 vcpu
2 GB RAM
a dedicated stor... -
04:18 PM Task #2261 (Closed): Better check for data.d4science.org availability
- Done.
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03:12 PM Task #2261: Better check for data.d4science.org availability
- URI to ckeck the gis-viewer-app availability:
1 - http://data.d4science.org/gis-viewer-app/
2 - http://data.d4scien... -
03:39 PM Task #4815 (Closed): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa
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03:18 PM Incident #4805 (Closed): SmartGears on dataminer4 fails to save status
- this issue will be solved with the release 4.1.
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02:13 PM Task #4826: Create load balancing for data.d4science.org
- No, I don't think so.
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01:06 PM Task #4826: Create load balancing for data.d4science.org
- As we said, there's no problem as long as the webapps have no state.
We can use the same VM that is acting as load... -
12:51 PM Task #4826 (Closed): Create load balancing for data.d4science.org
- In order to avoid the single point of failure for data.d4science.org I suggest to create a load balancing (with at le...
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11:35 AM Task #4824 (Closed): Please delete user frippe12573 from LDAP
- Done.
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11:05 AM Task #4824 (Closed): Please delete user frippe12573 from LDAP
- user (Eugenio Trumpy) having username frippe12573 from LDAP Liferay should be delete. Do NOT delete user (Eugenio Tru...
Jul 28, 2016
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06:31 PM Task #4806 (Closed): Nagios monitoring for the Couchbase cluster
- We now have detailed checks for the two main buckets on ganglia too.
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03:46 PM Incident #4805: SmartGears on dataminer4 fails to save status
- Any news?
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03:46 PM Incident #4789 (Closed): Workspace does not delete Dataminer folder
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03:28 PM Task #3980 (Closed): Configure geonetwork users in order to integrate CKAN
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03:12 PM Task #2261 (In Progress): Better check for data.d4science.org availability
- Added to nagios. You can see the host details here: http://monitoring.research-infrastructures.eu/cgi-bin/nagios3/sta...
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11:10 AM Task #2261 (Feedback): Better check for data.d4science.org availability
- For uri-resolver check, I've uploaded a jpg on gCube VRE Folder and I've generated the related public link.
You coul... -
11:09 AM Task #2261 (In Progress): Better check for data.d4science.org availability
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12:32 PM Upgrade #4329 (Completed): Produce Release Notes for gCube 4.0.0
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12:32 PM Upgrade #4329 (In Progress): Produce Release Notes for gCube 4.0.0
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12:32 PM Upgrade #4327 (Completed): D4Science Gateways upgrade to gCube 4.0
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10:28 AM Task #4820 (Closed): Increase RAM on mongo1.p.d4science.org
- I've notice that mongo1-p-d4s.d4science.org have only 500 MB of RAM.
Please, increase the ram to 2 GB.
Jul 27, 2016
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07:42 PM Task #4806 (Feedback): Nagios monitoring for the Couchbase cluster
- @pieve.alessandro@gmail.com I need some feedback about the checks. I have activated a subset of the available ones. ...
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06:17 PM Task #4806: Nagios monitoring for the Couchbase cluster
- There's also a ganglia plugin available: https://github.com/kozdincer/ganglia-couchbase
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10:27 AM Task #4806 (In Progress): Nagios monitoring for the Couchbase cluster
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09:52 AM Task #4806: Nagios monitoring for the Couchbase cluster
- The credentials are comunicated
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07:18 PM Task #4811 (Closed): Update Terms of Use page for each Gateway
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06:33 PM Task #4811 (In Progress): Update Terms of Use page for each Gateway
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02:31 PM Task #4811 (Closed): Update Terms of Use page for each Gateway
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04:57 PM Task #4813 (Closed): Deploy Google Analytics tool for each Gateway
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04:48 PM Task #4813 (In Progress): Deploy Google Analytics tool for each Gateway
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02:34 PM Task #4813 (Closed): Deploy Google Analytics tool for each Gateway
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04:28 PM Task #4812 (Closed): Update Cookies Policy page for each Gateway
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02:32 PM Task #4812 (Closed): Update Cookies Policy page for each Gateway
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03:55 PM Task #4815 (Feedback): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa
- On preprod1.d4science.org you now have a db named `infra_dev_db` accessible by the `infra_dev` user from dev2.d4scien...
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03:45 PM Task #4815 (In Progress): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa
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02:57 PM Task #4815 (Closed): Enable dev2.d4science to reach postgreSQL instance on preprod1.d4science and viceversa
- In production we had (minor) issues related to the fact that the Liferay DB is no longer on the same portal node. For...
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02:34 PM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0
- due to changes in a related task
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02:31 PM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0
- due to changes in a related task
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01:56 PM Task #4245 (Closed): Install NetCDF-C on thredds
- Netcdf 4.4.0 was already installed on thredds and thredds-d-d4s and the playbook was correct.
I removed the older li... -
01:40 PM Task #4245 (In Progress): Install NetCDF-C on thredds
- Netcdf 4.4.0 is required also on thredds.d4science.org, @tommaso.piccioli@isti.cnr.it could you please run the same i...
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11:26 AM Task #4414: New server for the Broker Service
- VM prepared to be restarted with 8 vcpu and 16 GB ram.
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11:07 AM Task #4414: New server for the Broker Service
- Andrea, can you increase the RAM?
At least 16 GBs are required.
Today the server is used for a demo, so
you s... -
11:18 AM Support #4808: Broken links to iMarine gateway in BB and iMarine webpages
- the correct link to use is https://i-marine.d4science.org/
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10:24 AM Support #4808 (Closed): Broken links to iMarine gateway in BB and iMarine webpages
- The links to the gateway in the websites:
iMarine
https://portal.i-marine.d4science.org/web/guest;jsessionid=0B79... -
11:12 AM Incident #4809 (Closed): Auth service down in SmartArea/SmartBuilding VRE
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11:12 AM Incident #4809 (Resolved): Auth service down in SmartArea/SmartBuilding VRE
- I've added the Authorization service resource to SmartBuilding VRE
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11:11 AM Incident #4809 (In Progress): Auth service down in SmartArea/SmartBuilding VRE
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11:00 AM Incident #4809 (Closed): Auth service down in SmartArea/SmartBuilding VRE
- https://services.d4science.org/group/smartbuilding
Jul 26, 2016
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10:47 PM Incident #4805: SmartGears on dataminer4 fails to save status
- Sorry, let me clarify that I opened this ticket because the issue was frequent but random on the development machines...
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10:14 PM Incident #4805: SmartGears on dataminer4 fails to save status
- There's an open ticket for the bug, #2176
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09:57 PM Incident #4805: SmartGears on dataminer4 fails to save status
- Andrea and Tommaso have added useful information, but the solution should be provided by Lucio. This is a long-known ...
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07:54 PM Incident #4805: SmartGears on dataminer4 fails to save status
- is this incident solved?
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07:20 PM Incident #4805: SmartGears on dataminer4 fails to save status
- I don't think that the VM performances have a big impact on the corrupted state problem. Yesterday a dozen smartexecu...
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07:15 PM Incident #4805: SmartGears on dataminer4 fails to save status
- The slowest machine is dataminer5-p-d4science, slower than dataminer4-p-d4s, cpu and disk.
Anyway, the speed at a ce... -
07:02 PM Incident #4805 (Closed): SmartGears on dataminer4 fails to save status
Each time the SmartGears service on dataminer4-p-d4s.d4science.org is shutdown, the status gets corrupted. This mac...-
08:11 PM Task #4806: Nagios monitoring for the Couchbase cluster
- @alessandro.pieve@isti.cnr.it can you provide us the credentials?
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08:10 PM Task #4806 (Closed): Nagios monitoring for the Couchbase cluster
- To monitor the Couchbase cluster we need a username/password to access the db.
Possibly a username dedicated to th... -
07:46 PM Task #4722 (Closed): Enable Nagios check on SmartExecutor nodes
- Done.
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07:39 PM Task #897 (Closed): Install and configure a couchdb cluster
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07:39 PM Task #325 (Closed): Nagios monitoring for couchdb
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07:07 PM Task #364 (Closed): Nagios: create a new hostgroup and assign all the CNR monitored hosts to it
- All the monitored local hosts are now under the `CNR site` group.
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05:54 PM Task #3261 (Closed): Manage more ldap groups from the portal so that we can setup different roles on various services
- We solved in a different way, see #3064
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05:51 PM Task #4476 (Closed): Please create new VM for production HA Proxy and deploy it
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05:40 PM Task #4476 (Feedback): Please create new VM for production HA Proxy and deploy it
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05:51 PM Task #4477 (Closed): Create a new VM for tomcat production cluster
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05:46 PM Task #4773 (Closed): The nagios check that verifies the support expiry day does not work anymore
- Fixed by @tommaso.piccioli@isti.cnr.it
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05:42 PM Task #2720 (Closed): Explore rundeck as a better alternative to foreman
- It does not work and the development is stuck.
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05:41 PM Task #4791 (Closed): Increase the number of file descriptors
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01:29 PM Task #4791 (Feedback): Increase the number of file descriptors
- We now have two tasks.
One sets the root defaults and it will be executed on all our provisioned hosts.
The sec... -
12:27 PM Task #4791 (In Progress): Increase the number of file descriptors
- I'm going to create two tasks:
* One that changes the defaults for the root user
* One that changes the limits fo... -
12:03 PM Task #4791 (Closed): Increase the number of file descriptors
- Please increase the number of file descriptors to 16000 on all provisioned solutions we are currently delivering
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05:38 PM Task #4466 (Closed): Export Accounting Data from Couchdb to Couchbase
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03:49 PM Task #3997 (Closed): Couchbase investigation
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03:49 PM Task #3965 (Closed): InfluxDB investigation
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02:15 PM Upgrade #4785: Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
- Great, many thanks
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12:03 PM Upgrade #4785 (Completed): Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
- Rttudio is now available in the VRE Page at https://i-marine.d4science.org/group/biodiversitylab/r-studio
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12:03 PM Upgrade #4785 (In Progress): Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
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12:01 PM Upgrade #4785 (Planned): Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
- The RStudio Connector is already installed in BiodiversityLab.
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01:19 PM Incident #4789 (Resolved): Workspace does not delete Dataminer folder
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10:20 AM Incident #4789 (In Progress): Workspace does not delete Dataminer folder
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08:49 AM Incident #4789 (Closed): Workspace does not delete Dataminer folder
- When I try to delete the Dataminer folder (or any of its subfolders) in my Workspace, I get this error and nothing ha...
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01:18 PM Task #4788 (Closed): StatMan and TrendyLyzer web apps substitution
- Another cluster of DataMiners was assigned to this VRE. Dataminer works in all the scopes. Thanks.
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11:15 AM Task #4788 (In Progress): StatMan and TrendyLyzer web apps substitution
- Everything looks ok except for for StockAssessment VRE:
Error retrieving operators classification! No DataMiner se... -
08:40 AM Task #4788: StatMan and TrendyLyzer web apps substitution
- The Dataminer proxy Service Endpoint was missing. The portlet works in the Scalable Data Mining VRE. I have assigned ...
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12:45 AM Task #4788 (Paused): StatMan and TrendyLyzer web apps substitution
- I'll pause until we're sure the backed is ready
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12:45 AM Task #4788 (In Progress): StatMan and TrendyLyzer web apps substitution
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12:44 AM Task #4788 (Feedback): StatMan and TrendyLyzer web apps substitution
- on ScalableDataMining Data Miner porltet report the error:
Error retrieving operators classification! No DataMine... -
12:37 AM Task #4788 (In Progress): StatMan and TrendyLyzer web apps substitution
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12:14 PM Task #4782: Provide ansible playbook for dataminer deployment
- OK, everything works correctly. I think we can close this ticket.
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11:12 AM Task #4782: Provide ansible playbook for dataminer deployment
- Gianpaolo Coro wrote:
> Hi Andrea, the "sobigdata" term makes me thrill... :-S
>
> The distribution of the datami... -
10:17 AM Task #4782: Provide ansible playbook for dataminer deployment
- Hi Andrea, the "sobigdata" term makes me thrill... :-S
The distribution of the dataminer should be:
~~~
datam... -
09:11 AM Task #4782: Provide ansible playbook for dataminer deployment
- Gianpaolo Coro wrote:
> I have run complete tests, also on the geoprocessing algorithms. All the dataminers works. N... -
08:52 AM Task #4782: Provide ansible playbook for dataminer deployment
- I have measured that dataminer4 and dataminer6 are slower than the other machines. Is it possible to move them on a b...
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08:42 AM Task #4782: Provide ansible playbook for dataminer deployment
- I have run complete tests, also on the geoprocessing algorithms. All the dataminers works. Now it's time to implement...
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12:14 PM Task #4790: Accept new users / only option is 'Accept All'
- Release 4.1 will be opened and closed in September.
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12:05 PM Task #4790: Accept new users / only option is 'Accept All'
- Thank you for the feedback. We will check all suggestions and try to make them available in 4.1
@pasquale.pagano@ist... -
11:54 AM Task #4790: Accept new users / only option is 'Accept All'
- @anton.ellenbroek@fao.org thanks for the suggestions. I am going to change the tracker since the support request has ...
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10:50 AM Task #4790: Accept new users / only option is 'Accept All'
- The user admin looks much better than the previous version, but I still have a few comments.
Users' request
I cl... -
10:10 AM Task #4790 (In Progress): Accept new users / only option is 'Accept All'
- you should select the user you want to accept first then the accept button will appear
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09:16 AM Task #4790 (Closed): Accept new users / only option is 'Accept All'
- In the new portal, I can only accept 'All requests', not individual requests.
Column 'All' means???
Maybe cha... -
11:21 AM Task #4667 (Closed): Undeploy gCubeApps/DocumentsWorkflow VRE
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11:20 AM Task #4667 (In Progress): Undeploy gCubeApps/DocumentsWorkflow VRE
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10:16 AM Task #4449: Authorise OAuth2 Redirect URLs for social logins on all the Production Sites
- If i understand correctly you are saying there is no need to specify the redirect uri in (https://apps.dev.microsoft....
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10:07 AM Task #4449: Authorise OAuth2 Redirect URLs for social logins on all the Production Sites
- Hi @massimiliano.assante@isti.cnr.it, what about leaving the redirect uri empty, the hook specifies the redirect uri ...
Jul 25, 2016
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08:31 PM Upgrade #4322: gCubeApps VO upgrade to gCube 4.0
- due to changes in a related task
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07:56 PM Upgrade #4322 (Completed): gCubeApps VO upgrade to gCube 4.0
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07:56 PM Upgrade #4322 (In Progress): gCubeApps VO upgrade to gCube 4.0
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08:28 PM Upgrade #4319 (In Progress): D4Science Infrastructure Upgrade to gCube 4.0
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08:27 PM Upgrade #4319 (Planned): D4Science Infrastructure Upgrade to gCube 4.0
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08:10 PM Task #4782: Provide ansible playbook for dataminer deployment
- dataminer [1:2] work. Perhaps, tomorrow I will be able to test the geoprocessing part. If you create the groups of da...
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07:21 PM Task #4782: Provide ansible playbook for dataminer deployment
- dataminer[1:2] has been upgraded (for real, this time).
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06:14 PM Task #4782: Provide ansible playbook for dataminer deployment
- Dataminer 3:6 have been tested on non-geospatial algorithms. I'm waiting for the geospatial infrastructure to be up a...
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09:43 AM Task #4782: Provide ansible playbook for dataminer deployment
- The issue regarding home-library is due to the fact that Jackrabbit is not updated, so the folder cannot be set as "s...
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08:54 AM Task #4782: Provide ansible playbook for dataminer deployment
- Yes Andrea, I will fix the 52-North dependencies as soon as I will be back to work on DataMiner.
However, I have c... -
07:20 PM Task #4449 (Feedback): Authorise OAuth2 Redirect URLs for social logins on all the Production Sites
- Microsoft login hook has to bi disable as it seems that Microsoft does not allow multiple platforms for application (...
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06:47 PM Task #4449 (In Progress): Authorise OAuth2 Redirect URLs for social logins on all the Production Sites
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06:47 PM Task #4448 (Closed): Authorize Redirect URLs for LinkedIn Profile import for all the Production Sites
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06:23 PM Task #4448 (In Progress): Authorize Redirect URLs for LinkedIn Profile import for all the Production Sites
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06:35 PM Upgrade #4730 (Completed): Upgrade JackRabbit Repository
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06:09 PM Upgrade #4730 (In Progress): Upgrade JackRabbit Repository
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06:13 PM Upgrade #4785: Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
- Yes we can install RStudio in BiodiversityLab. Users will be able to install packages for their own personal working ...
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12:31 PM Upgrade #4785: Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
- please @gianpaolo.coro@isti.cnr.it confirm that you support this request. As soon as GP confirm, @roberto.cirillo@ist...
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12:11 PM Upgrade #4785 (Completed): Is it possible to have an RStudio accessible from the BiodiversityLab VRE?
- It would be useful to have an RStudio accessible from the BiodiversityLab VRE, next to the Statistical Algorithms Imp...
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06:09 PM Task #4788 (Closed): StatMan and TrendyLyzer web apps substitution
- The TrendyLyzer portlet should be removed and the StatMan portlet should be substituted by DataMiner in the following...
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05:51 PM Task #4640 (Closed): Dismiss BiOnym apps
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05:50 PM Task #4364 (Closed): Update production keyspace definition on Cassandra Cluster to support new notification system
- run migration from the current unread notifications to the new column family OK
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05:40 PM Upgrade #4320 (Completed): FARM VO upgrade to gCube 4.0
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05:39 PM Upgrade #4320 (In Progress): FARM VO upgrade to gCube 4.0
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05:39 PM Upgrade #4326 (Completed): SmartArea VO upgrade to gCube 4.0
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05:39 PM Upgrade #4326 (In Progress): SmartArea VO upgrade to gCube 4.0
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05:23 PM Upgrade #4323 (Completed): D4Science Root VO upgrade to gCube 4.0
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05:22 PM Upgrade #4323 (In Progress): D4Science Root VO upgrade to gCube 4.0
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02:52 PM Upgrade #4731 (Completed): Update Jackrabbit WebApp
- Jackrabbit WebApp has been updated to 1.4 version.
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02:49 PM Upgrade #4731 (In Progress): Update Jackrabbit WebApp
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02:52 PM Upgrade #4732 (Completed): Update Node Type Definition of Jackrabbit
- Jackrabbit Node Type Definition has been updated.
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02:49 PM Upgrade #4732 (In Progress): Update Node Type Definition of Jackrabbit
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02:51 PM Task #4734 (Closed): Set .application folders to hidden
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02:50 PM Task #4734 (In Progress): Set .application folders to hidden
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02:33 PM Upgrade #4327 (In Progress): D4Science Gateways upgrade to gCube 4.0
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12:19 PM Upgrade #4327 (Planned): D4Science Gateways upgrade to gCube 4.0
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12:31 PM Task #4476: Please create new VM for production HA Proxy and deploy it
- Done, both for the preproduction and the production environments.
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12:09 PM Task #4476 (In Progress): Please create new VM for production HA Proxy and deploy it
- We need to workaround a problem with the liferay clustering. We are exploiting the _weight_ option on the haproxy bac...
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12:07 PM Task #4703 (Closed): Create Tomcat startup script at boot
- The startup script is working.
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11:49 AM Upgrade #4325 (Completed): SoBigData VO upgrade to gCube 4.0
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11:48 AM Upgrade #4325 (In Progress): SoBigData VO upgrade to gCube 4.0
Jul 24, 2016
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02:30 PM Task #4782: Provide ansible playbook for dataminer deployment
- I've just added the following files:
~~~
52n-wps-algorithm-3.5.0.jar
52n-wps-commons-3.5.0.jar
52n-wps-database...
Jul 23, 2016
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02:00 AM Task #4782: Provide ansible playbook for dataminer deployment
- The 3:6 services are not running because there are 52North WPS 3.5.0 libraries together with the (required) 3.3.2 lib...
Jul 22, 2016
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04:58 PM Task #4640 (In Progress): Dismiss BiOnym apps
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04:58 PM Task #4450 (Closed): Modify the Email Notification sent over new user registrations
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04:58 PM Task #4450 (In Progress): Modify the Email Notification sent over new user registrations
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04:57 PM Task #4723 (Closed): smartgears configuration: handle the case where a smartgears must run without a VO
- It works.
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04:56 PM Task #4782: Provide ansible playbook for dataminer deployment
- A couple of notes:
~~~
dataminer1-p-d4s.d4science.org
dataminer2-p-d4s.d4science.org
~~~
will be upgraded ne... -
04:31 PM Task #4782 (Feedback): Provide ansible playbook for dataminer deployment
-
09:59 AM Task #4782 (In Progress): Provide ansible playbook for dataminer deployment
-
09:36 AM Task #4782 (Closed): Provide ansible playbook for dataminer deployment
- Provide an ansible playbook that deploys the dataminer instances in production environment:
~~~
dataminer1-p-d4s.... -
02:23 PM Task #4606 (Closed): Geonetwork dev 64 bit
-
02:22 PM Task #205 (In Progress): Automate the installation and configuration of the geonetwork servers
- Work in progress. See also #4606
-
02:19 PM Task #183 (In Progress): tomcat running as root user under port 80
- tomcat instances still running as root:
* wps.statistical.d4science.org
* the geonetworks (there's a dev installa... -
02:13 PM Task #4771 (Closed): Run smartgears on the rstudio-server instances as unprivileged user
- Working correctly in production too.
-
01:12 PM Task #4771: Run smartgears on the rstudio-server instances as unprivileged user
- I provisioned the production instance too, in the same way. I also changed the home directory permissions for the exi...
-
02:04 PM Task #4783 (Closed): Please create new email account for sobigdata gateway
- Done
-
01:56 PM Task #4783 (Closed): Please create new email account for sobigdata gateway
- sobigdata@d4science.org
Jul 21, 2016
-
07:37 PM Task #2174: Dataminer and Statistical Manager packages
- All added to the playbook lists.
-
02:36 PM Task #2174: Dataminer and Statistical Manager packages
- ~~~
install.packages("gdata")
~~~ -
07:27 PM Task #4771 (Feedback): Run smartgears on the rstudio-server instances as unprivileged user
- It seems I got it working. I heavily modified the script that adds the users so that it uses sudo.
It also creates a... -
12:04 PM Task #4771 (In Progress): Run smartgears on the rstudio-server instances as unprivileged user
- Starting with rstudio-dev
-
12:02 PM Task #4771: Run smartgears on the rstudio-server instances as unprivileged user
- We need to:
* Give sudo privileges to the commands esecuted by the `Ruseradd.sh` script
* Add firewall rules to i... -
12:00 PM Task #4771 (Closed): Run smartgears on the rstudio-server instances as unprivileged user
We need to:
* Give sudo privileges to the commands esecuted by the `Ruseradd.sh` script
*-
07:26 PM Incident #4778 (Closed): Workspace interaction is very slow
-
07:25 PM Incident #4778 (In Progress): Workspace interaction is very slow
-
06:38 PM Incident #4778: Workspace interaction is very slow
- i marine gateway has been restarted, up again in few minutes
-
06:37 PM Incident #4778: Workspace interaction is very slow
- no, we're getting rid of this VM on Monday, I suppose a server restart would be enough to temporarily fix this problem
-
06:26 PM Incident #4778: Workspace interaction is very slow
- The slower portal is on a slower xen server, I can move it on another hardware, it requires very few minutes of downt...
-
05:39 PM Incident #4778: Workspace interaction is very slow
- i-marine.d4science.org
-
05:35 PM Incident #4778: Workspace interaction is very slow
- @gianpaolo.coro@isti.cnr.it what portal are you using?
-
05:04 PM Incident #4778: Workspace interaction is very slow
- The iMarine portal seems to be very slow, while Services portal is ok. To upload a file (77 KB) to the Workspace, iMa...
-
04:22 PM Incident #4778: Workspace interaction is very slow
- I confirm that it is very slow, too slow to be real. It happens since yesterday. I am changing the assignee since it ...
-
04:10 PM Incident #4778 (Closed): Workspace interaction is very slow
- The Workspace requires 2 minutes for a ~100k file upload.
Overall it makes very difficult to use StatMan because ge... -
06:58 PM Support #4764 (Closed): BiodiversityLab - SAI - Impossible to open a project
- Support. Solved.
(Thanks Gianpaolo for your support! I'm going to work more with SAI/Dataminer now) -
06:53 PM Support #4764 (In Progress): BiodiversityLab - SAI - Impossible to open a project
- is this a request of support? if yes, has it been satisfied? If yes, please close the ticket.
If it is not a reques... -
06:21 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- At each saving step also a consistency check is made. For example, the save button on the parameters does some checks...
-
05:37 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Sorry for the delay in responding, i tried to access the project, it works now.
Before closing the issue, can you cl... -
04:50 PM Incident #4774 (Closed): Issues with the WS in the production environment
- If you are referring to the "gcf problem", the "gcf problem" cannot happen in the future because this problem was alr...
-
04:03 PM Incident #4774: Issues with the WS in the production environment
- What is planned to avoid this issue in the future or to be alerted? It was very difficult to understand that it was d...
-
03:58 PM Incident #4774 (Resolved): Issues with the WS in the production environment
- The problem was due to a bad gcf library deployed on IS-Collector. Anyway, if the system is slow this is not related ...
-
03:46 PM Incident #4774: Issues with the WS in the production environment
- The exception has disappeared and this is good.
However, the system is slow (5 strings displayed in half minute). P... -
03:42 PM Incident #4774: Issues with the WS in the production environment
- Could you retry now, please?
-
03:18 PM Incident #4774 (In Progress): Issues with the WS in the production environment
-
03:08 PM Incident #4774: Issues with the WS in the production environment
- I'm referring to the BioDiversityLab VRE for the algorithms. We see these errors on the portal: http://paste.research...
-
03:01 PM Incident #4774: Issues with the WS in the production environment
- Please, could you add some details? Have you seen any exception in statistical service? The problem is only in upload...
-
02:47 PM Incident #4774 (Closed): Issues with the WS in the production environment
- It seems that something is wrong with the Workspace. The StatMan computations do not report output anymore and people...
-
04:34 PM Task #4720: Deploy FhnManager service in /gcube/preprod
- Roberto Cirillo wrote:
> I've deployed fhn-manager-service on node75.d4science.org but I see on starting a certifica... -
02:26 PM Task #4735 (Closed): Change the owner of storage files according to Jackrabbit information
- The metadata 'owner' of Storage has been updated according to Jackrabbit information. For 10.199 files the owner has ...
-
01:39 PM Task #4773 (Closed): The nagios check that verifies the support expiry day does not work anymore
It seems that uses a deprecated API version
Jul 20, 2016
-
03:23 PM Task #2946 (Closed): Install ganglia and the local nagios checks on thredds-p-d4s.d4science.org
- Done.
-
02:26 PM Task #2946 (In Progress): Install ganglia and the local nagios checks on thredds-p-d4s.d4science.org
- Ganglia is active.
-
03:23 PM Task #4196 (Closed): Restore nagios check on thredds VM
- Done.
-
02:24 PM Task #4196 (In Progress): Restore nagios check on thredds VM
-
03:14 PM Task #4734: Set .application folders to hidden
- ".application" folders have been set to hidden.
-
03:01 PM Task #4735 (In Progress): Change the owner of storage files according to Jackrabbit information
-
12:45 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Have you solved the issue?
Just as a clarification: After you change something you should save your project as in a ... -
12:19 AM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Further, do not open take the Workspace and the SAI Web interface opened in two tabs in the browser, because this mix...
-
12:16 AM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Please, try selecting the folder but not double clicking it when you open the project; i.e., do not enter in the fold...
Jul 19, 2016
-
11:55 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Files (R script, and stat_algo project file) are there if i look into the workspace from the portal. If i look into t...
-
11:13 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Hi Emmanuel, the SAI project corresponds to a folder on the Workspace. To see if you saved the project, go to the WS ...
-
03:54 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project
- Now i realize that possibly i didn't save the project once assigned the VREs, because i don't see any of this informa...
-
03:20 PM Support #4764 (Closed): BiodiversityLab - SAI - Impossible to open a project
- I've created a project in SAI + its R script. I've then assigned the R environment + the BiodiversityLab as target VR...
-
07:12 PM Task #4765 (Closed): Renew the wiki certificates
- The Terena TLS certificate is missing some host aliases, let's ask for a Letsencrypt certificate that lists all the h...
-
05:42 PM Task #3064 (Closed): Investigate the installation of an identity manager
- It's working. I just reconfigured redmine to use the new ldap `redmine_admins` group as the administrators group.
-
04:07 PM Task #3064: Investigate the installation of an identity manager
It's working, I'm installing it on ldap.d4science.org too.-
12:05 PM Task #3064: Investigate the installation of an identity manager
- I'm experimenting with fusiondirectory, reachable here: https://ldap-d.d4science.org/fusiondirectory/
The admin us... -
05:41 PM Task #4720 (Feedback): Deploy FhnManager service in /gcube/preprod
Jul 18, 2016
-
03:02 PM Task #4720 (In Progress): Deploy FhnManager service in /gcube/preprod
-
03:02 PM Task #4720: Deploy FhnManager service in /gcube/preprod
- I've deployed fhn-manager-service on node75.d4science.org but I see on starting a certificate exception (I haven't in...
-
02:53 PM Task #4721 (Closed): Migrate node75.d4science.org from gCubeapps VO to preprod VO
-
02:53 PM Task #4721 (In Progress): Migrate node75.d4science.org from gCubeapps VO to preprod VO
-
01:40 PM Task #4733: Remove node74.d4science.org from smart-executor ganglia cluster
- This will happen automatically if the host will be provisioned by an ansible playbook.
-
01:38 PM Task #4742 (Closed): Registry services: Increase the maximum number of file descriptor to 32000
- The limits were raised in 2013, but the pam configuration for the `su` command was not fixed. So the new limits were ...
-
09:50 AM Task #4742 (Closed): Registry services: Increase the maximum number of file descriptor to 32000
- This setting should be applied on all instances running in production:
~~~
node2.p.d4science.research-infrastruct... -
12:22 PM Task #2174: Dataminer and Statistical Manager packages
- Postgres and PostGIS clients are required (have been already installed on dataminer1-d):
~~~
apt-get install post... -
11:59 AM Incident #4743 (Closed): problems on nexus
-
11:57 AM Incident #4743 (Resolved): problems on nexus
- OK, problem founded in the pam configuration, at boot processes started with "su" didn't set ulimit correctly.
Fix... -
11:39 AM Incident #4743: problems on nexus
- The limit for the open files was already setted to 16000/32000 years ago and nexus restarted after that for sure.
... -
11:10 AM Incident #4743: problems on nexus
- @tommaso.piccioli@isti.cnr.it please increase the number of descriptors and close the ticket. Thanks
-
10:53 AM Incident #4743 (In Progress): problems on nexus
- I could resolve all the artifacts to compile and release a module. For the moment nexus seems to be back to work. Tha...
-
10:36 AM Incident #4743: problems on nexus
- For the moment I've restarted the nexus server.
Could you retry now, please? -
10:23 AM Incident #4743: problems on nexus
- The maximum number of open files has been reached.
From shell I see that the nexus process has 1024 files opened.
u... -
09:57 AM Incident #4743 (Closed): problems on nexus
- The nexus server on maven.research-infrastructure.eu seems to be misbehaving, see attached screenshots.
Although s...
Jul 15, 2016
-
07:13 PM Task #3064: Investigate the installation of an identity manager
- midPoint is way too much and way too complex for our needs. Better try a plain ldap manager:
https://www.fusiondir... -
03:55 PM Task #3064 (In Progress): Investigate the installation of an identity manager
- idm.d4science.org. IN A 146.48.122.94
-
03:46 PM Task #469 (Closed): Move some VMs to the new hypervisor to set some servers free and usable to experiment with OpenStack
-
03:45 PM Task #2514 (Closed): Free dlib8x and dlib10x and assign them to the ganeti cluster
- We are not sure that using old and low capacity servers to host corporate services is a good idea. Closing for now.
-
03:44 PM Task #472 (Closed): Move the VMs from the 'OpenStack servers' to the new hypervisor
-
03:44 PM Task #471 (Closed): Locate the hypervisors to dedicate to OpenStack
- We are going to start with two new servers.
-
01:39 PM Task #4736 (Closed): smartgears container.xml: the context specific scope configuration needs to be generic
- Done. Modified all the use cases accordingly.
-
01:04 PM Task #4736 (In Progress): smartgears container.xml: the context specific scope configuration needs to be generic
-
01:04 PM Task #4736 (Closed): smartgears container.xml: the context specific scope configuration needs to be generic
- The template automation was created for the smart executor, but it's needed by other applications.
So it needs to ... -
11:37 AM Upgrade #4730 (Planned): Upgrade JackRabbit Repository
-
11:09 AM Upgrade #4730 (Completed): Upgrade JackRabbit Repository
-
11:37 AM Task #4735 (Closed): Change the owner of storage files according to Jackrabbit information
- Old files in Storage have a wrong owner. They have to be updated according to Jackrabbit information.
-
11:30 AM Task #4734 (Closed): Set .application folders to hidden
- Since HL 2.4 will display folders with a dot at the start, ".application" folders have to be set to hidden (as proper...
-
11:22 AM Task #4733 (Closed): Remove node74.d4science.org from smart-executor ganglia cluster
- This node now hosts a service gCore based: SPD
-
11:21 AM Upgrade #4732 (Completed): Update Node Type Definition of Jackrabbit
- Node type definition (CND) of Jackrabbit defines the structure of nodes. It has to be updated in order to enable new ...
-
11:20 AM Task #4728 (Closed): Deploy SPD service on node74.d4science.org in /gcube/preprod VO
-
11:20 AM Task #4728 (In Progress): Deploy SPD service on node74.d4science.org in /gcube/preprod VO
-
09:59 AM Task #4728 (Closed): Deploy SPD service on node74.d4science.org in /gcube/preprod VO
-
11:19 AM Task #4729 (Closed): Migrate node74.d4science.org from gCubeapps VO to /gcube/preprod VO
-
11:19 AM Task #4729 (In Progress): Migrate node74.d4science.org from gCubeapps VO to /gcube/preprod VO
-
10:03 AM Task #4729 (Closed): Migrate node74.d4science.org from gCubeapps VO to /gcube/preprod VO
- It's need to install a gCore based container and the SPD service
-
11:18 AM Upgrade #4324 (Completed): /gcube/preprod upgrade to gCube 4.0.0
-
11:15 AM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0
- due to changes in a related task
-
11:15 AM Upgrade #4731 (Completed): Update Jackrabbit WebApp
- Jackrabbit WebApp has to be updated to version 1.4.
Jul 14, 2016
-
05:00 PM Task #4442 (Closed): Create Custom Fields in Liferay DB for Site
-
03:30 PM Task #4442 (In Progress): Create Custom Fields in Liferay DB for Site
-
02:17 PM Task #4364: Update production keyspace definition on Cassandra Cluster to support new notification system
- Also, a script should be run to migrate the current unread notifications to the new column family
-
02:14 PM Task #4364 (In Progress): Update production keyspace definition on Cassandra Cluster to support new notification system
-
01:16 PM Task #4723 (Feedback): smartgears configuration: handle the case where a smartgears must run without a VO
-
12:22 PM Task #4723 (In Progress): smartgears configuration: handle the case where a smartgears must run without a VO
-
12:22 PM Task #4723 (Closed): smartgears configuration: handle the case where a smartgears must run without a VO
- Add a conditional in the container.xml template to handle the case.
-
12:11 PM Task #4476: Please create new VM for production HA Proxy and deploy it
- Massimiliano Assante wrote:
> Please remember that all these domains below, including some others yet to be created ... -
12:09 PM Task #4476: Please create new VM for production HA Proxy and deploy it
- Please remember that all these domains below, including some others yet to be created (bluebridge.d4science.org smart...
-
12:03 PM Task #4476 (Feedback): Please create new VM for production HA Proxy and deploy it
- sobigdata.research-infrastructures.eu added as CNAME, x509 certificate updated with the new alias.
I increased the... -
11:58 AM Task #4606 (Feedback): Geonetwork dev 64 bit
- Smartgears and postgresql 9.4 installed. The `geonetwork` db has the postgis extensions active.
-
11:52 AM Task #4722 (Closed): Enable Nagios check on SmartExecutor nodes
- It's need to enable the standard nagios check for smart-executor service on all smartExecutor nodes, if it is not pre...
-
11:32 AM Task #4718: installation of fhn-manager on gcube/preprod
- Please refer to #4720 for this activity
-
10:39 AM Task #4721 (Closed): Migrate node75.d4science.org from gCubeapps VO to preprod VO
- The smart-executor hosted on node75.d4science.org will be dismissed and the container will be upgraded and migrated f...
-
10:26 AM Task #4720 (Closed): Deploy FhnManager service in /gcube/preprod
- The new service will be hosted on node75.d4science.org
Jul 13, 2016
-
08:19 PM Task #4476: Please create new VM for production HA Proxy and deploy it
- Also the http call timeout on infra gateways seems to be default one, could you check?
-
08:08 PM Task #4476 (In Progress): Please create new VM for production HA Proxy and deploy it
- please add the following domain just like you added the others:
* sobigdata.research-infrastructures.eu -
07:47 PM Task #4606: Geonetwork dev 64 bit
The db user will be `geonetwork`.
I need the name of the application context for the virtualhost configuration.
-
03:12 PM Task #4606 (In Progress): Geonetwork dev 64 bit
- We are going to try another approach.
Please, make it a Smartgear installation and also install an updated version ... -
07:18 PM Task #4648 (Closed): Add Ganglia monitoring to the couchbase cluster
- You can see the couchbase nodes here: http://monitoring.research-infrastructures.eu/ganglia/?c=D4science%20Couchdb%20...
-
07:10 PM Task #4648 (In Progress): Add Ganglia monitoring to the couchbase cluster
-
05:19 PM Task #4648: Add Ganglia monitoring to the couchbase cluster
- Yes, you can. Soon (September with the release of gCube 4.1) CouchDB will be dismissed.
-
05:14 PM Task #4648: Add Ganglia monitoring to the couchbase cluster
- Can we add them to the actual `couchdb` ganglia cluster or we need a new one?
-
06:42 PM Upgrade #4323 (Planned): D4Science Root VO upgrade to gCube 4.0
-
10:29 AM Upgrade #4323: D4Science Root VO upgrade to gCube 4.0
- **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** node1.p.d4science.research-infrastructures.eu
* **(CNR) DO... -
06:41 PM Upgrade #4322 (Planned): gCubeApps VO upgrade to gCube 4.0
-
03:55 PM Upgrade #4322: gCubeApps VO upgrade to gCube 4.0
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** gcube01.vliz.be:8080
* **(CNR) DONE** node64.p.d4sc...-
06:40 PM Upgrade #4320 (Planned): FARM VO upgrade to gCube 4.0
-
11:56 AM Upgrade #4320: FARM VO upgrade to gCube 4.0
- **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** node24.p.d4science.research-infrastructures.eu:8080
* **(C... -
06:06 PM Task #4717 (Closed): Modify the solr_over_tomcat ansible playbook to support multiple core
- Done.
-
05:16 PM Task #4717 (In Progress): Modify the solr_over_tomcat ansible playbook to support multiple core
-
05:16 PM Task #4717 (Closed): Modify the solr_over_tomcat ansible playbook to support multiple core
- We need to be able to statically configure multiple solr cores, starting from a pristine `collection1` data set.
-
05:45 PM Task #4718 (Closed): installation of fhn-manager on gcube/preprod
- The requirements of the node that will host the service are:
- SmartGears
- RAM: >= 4
- CPU: no particular require... -
11:54 AM Upgrade #4325 (Planned): SoBigData VO upgrade to gCube 4.0
-
10:26 AM Upgrade #4325: SoBigData VO upgrade to gCube 4.0
- **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sbd.d4science.org:8080
* **(CNR) DONE** collecto... -
11:53 AM Upgrade #4326 (Planned): SmartArea VO upgrade to gCube 4.0
-
10:35 AM Upgrade #4326: SmartArea VO upgrade to gCube 4.0
- **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sa-d4s.smart-applications.area.pi.cnr.it:8080
* ... -
10:01 AM Task #4714 (Closed): MongoDB: convert mongo2-p from MMAPv1 to wiredTiger
-
10:01 AM Task #4714: MongoDB: convert mongo2-p from MMAPv1 to wiredTiger
- mongo2-p has been successfully resynchronized with the new WiredTiger engine.
The space used by MongoDB is decreased...
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