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From Feb 02, 2016 to Mar 02, 2016

Mar 02, 2016

07:37 PM Support #2467 (Resolved): Release StatMan Algorithms for 3.10.1
Roberto Cirillo
07:15 PM Support #2467: Release StatMan Algorithms for 3.10.1
Indeed we have just realized that the AbsencegenerationfromOBIS has been corrupted (the size does not correspond to t... Gianpaolo Coro
05:30 PM Support #2467: Release StatMan Algorithms for 3.10.1
Please use v. 1.0.0-3.10.1 Gianpaolo Coro
05:29 PM Support #2467: Release StatMan Algorithms for 3.10.1
There are two versions of statistical-manager-ewe-integrator library released in 3.10.1: "1.0.0-3.10.1" and "0.0.1-3.... Roberto Cirillo
05:24 PM Support #2467 (In Progress): Release StatMan Algorithms for 3.10.1
Roberto Cirillo
12:28 PM Support #2467 (Closed): Release StatMan Algorithms for 3.10.1
New algorithms should be released in 3.10.1 which include:
1 - Ecopath with Ecosim
2 - Absences estimation from OBI... Gianpaolo Coro
06:00 PM Task #2469: Install org.gcube.dataanalysis.dataminer.1.0.2
The playbook is ready. Waiting for the 1.0.2-3.10.1 version to appear on the maven repository.
 Andrea Dell'Amico
04:11 PM Task #2469 (In Progress): Install org.gcube.dataanalysis.dataminer.1.0.2
Andrea Dell'Amico
12:39 PM Task #2469 (Closed): Install org.gcube.dataanalysis.dataminer.1.0.2
dataminer.1.0.2 should be deployed on the following machines in turn. After each installation tests should be perform... Gianpaolo Coro
05:59 PM Task #102: AMQ in production: upgrade OS
Also the dev VM is old and not maintained. Should we start with that?
 Andrea Dell'Amico
05:57 PM Task #176 (Paused): Configure DSS to support EUDAT-D4Science integration
Andrea Dell'Amico
05:45 PM Task #2227: test replication tools for postgres
pgpool II and postres are installed on both machines. I'm studying the pgpool configuration to make it usable.
 Andrea Dell'Amico
04:09 PM Task #2227 (In Progress): test replication tools for postgres
Andrea Dell'Amico
05:31 PM Support #2463 (Closed): Need space on node6.t.openaire
I've doubled the disk space.
 Andrea Dell'Amico
05:28 PM Support #2463 (In Progress): Need space on node6.t.openaire
Andrea Dell'Amico
11:38 AM Support #2463 (Closed): Need space on node6.t.openaire
I need more space on the machine node6.t.openaire at least 60 gb of disk, because the objectstore is now on file syst... Sandro La Bruzzo
04:57 PM Task #2306 (Paused): Customize http://dataminer.d4science.org/wps/
Leonardo Candela
10:48 AM Task #2306 (In Progress): Customize http://dataminer.d4science.org/wps/
Gianpaolo Coro
04:56 PM Task #2465 (Paused): install IS-Collector on /gcube/preprod VO
Roberto Cirillo
04:56 PM Task #2465: install IS-Collector on /gcube/preprod VO
The is-collector instance has been installed. Before performing some functionality tests, I need to install the regis... Roberto Cirillo
02:51 PM Task #2465 (In Progress): install IS-Collector on /gcube/preprod VO
Roberto Cirillo
11:49 AM Task #2465 (Closed): install IS-Collector on /gcube/preprod VO
The new IS-Collector instance should be installed on: "collector-pre.d4science.org" Roberto Cirillo
02:54 PM Support #2317: Release the Statistical Algorithms Importer
This is last build:
http://etics.esl.eng.it/etics-repository-ws/reports/id/1641d70b-4576-4910-bb16-3f9214ae0554/ce... Giancarlo Panichi
02:28 PM Support #2317 (Closed): Release the Statistical Algorithms Importer
It works for me in the preproduction environment. SAI is ready to be released Gianpaolo Coro
12:16 PM Support #2317: Release the Statistical Algorithms Importer
Fixed a minor glitch for Workspace Explorer in order to avoid a double scrollbar when the Create Folder panel is show... Francesco Mangiacrapa
11:45 AM Support #2317: Release the Statistical Algorithms Importer
Please, do not use dev or dev3 to test the components. They are not updated to gCube 3.10.1.
Use just preprod enviro... Valentina Marioli
09:43 AM Support #2317: Release the Statistical Algorithms Importer
A new build of SAI org.gcube.3-10-1/BUILD_14 is ready on dev, dev3 and preprod for test. Giancarlo Panichi
11:52 AM Task #2466 (Closed): Install Registry service on /gcube/preprod VO
The new Registry service instance should be installed on: "registry-pre.d4science.org" Roberto Cirillo
10:37 AM Upgrade #2462: gCubeApps VO upgrade to gCube 3.10.1
**WHN to upgrade**

The following WHN should be upgraded to version 1.2.7

* **(CNR) DONE** dataminer1.d4sc... Roberto Cirillo
10:22 AM Upgrade #2462 (Completed): gCubeApps VO upgrade to gCube 3.10.1
This ticket keeps track of the gCubeApps VO upgrades to gCube 3.10.1 Roberto Cirillo
10:30 AM Support #2081 (Closed): Allow users to modify tickets
Luca Frosini
10:30 AM Support #2049 (Closed): Redmine: remove manually created group and add the one created from LDAP import to the right project
Luca Frosini
10:25 AM Upgrade #1913 (Closed): gCubeApps VO upgrade to gCube 3.10.0
Roberto Cirillo
10:18 AM Upgrade #1913 (Completed): gCubeApps VO upgrade to gCube 3.10.0
Roberto Cirillo
10:16 AM Upgrade #1913 (In Progress): gCubeApps VO upgrade to gCube 3.10.0
Roberto Cirillo
10:19 AM Upgrade #2461 (Completed): D4Science Infrastructure Upgrade to gCube 3.10.1
This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.10.1 Roberto Cirillo

Mar 01, 2016

06:03 PM Support #2317: Release the Statistical Algorithms Importer
The problem is due to the HL when a sub-folder (of a shared folder) is created its getPath returns the relative path ... Francesco Mangiacrapa
05:25 PM Support #2317: Release the Statistical Algorithms Importer
There is still one issue in the WS Explorer when getting paths for shared folders. Once solved and redeployed, I will... Gianpaolo Coro
09:45 AM Support #2317: Release the Statistical Algorithms Importer
A new build of SAI org.gcube.3-10-1/BUILD_13 is ready on dev, dev3 and preprod for test. Giancarlo Panichi
05:49 PM Task #2360 (Closed): new VM for hosting Registry and Notifier instances
registry-pre.d4science.org ready
user gcube added Tommaso Piccioli
05:49 PM Task #2352 (Closed): new VM for IS-Collector instance
collector-pre.d4science.org ready
user gcube added Tommaso Piccioli
02:45 PM Task #2227: test replication tools for postgres
I'm taking it. Andrea Dell'Amico
02:39 PM Task #2227: test replication tools for postgres
New empty VM created:
postgres1-d-d4s.d4science.org
postgres2-d-d4s.d4science.org
ubuntu 14.04 Tommaso Piccioli
12:28 PM Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
I see that Kronograf is still very limited and the useful features will not be open sources. It seems that http://gra... Andrea Dell'Amico

Feb 29, 2016

06:13 PM Task #2110 (Closed): Please provide new VM with Elastic Search
Massimiliano Assante
03:19 PM Task #2174: Dataminer and Statistical Manager packages
They are meant for the next release/pre-release. Gianpaolo Coro
02:56 PM Task #2174: Dataminer and Statistical Manager packages
Can I install it on all the servers? dataminer prod/dev, statistical prod/dev ?
 Andrea Dell'Amico
02:38 PM Task #2341 (Closed): Nagios: remove checks on dl16.di.uoa.gr and dl21.di.uoa.gr
Done. Andrea Dell'Amico
02:36 PM Task #2341 (In Progress): Nagios: remove checks on dl16.di.uoa.gr and dl21.di.uoa.gr
Andrea Dell'Amico
10:05 AM Support #2317: Release the Statistical Algorithms Importer
A new build of SAI org.gcube.3-10-1/BUILD_12 is ready on dev, dev3 and preprod for test. Giancarlo Panichi

Feb 26, 2016

06:05 PM Task #2227: test replication tools for postgres
@tommaso.piccioli@isti.cnr.it please react asap since we need to move forward on this activity. Pasquale Pagano
06:03 PM Task #2227: test replication tools for postgres
Do you have any update on this ? Lucio Lelii
05:05 PM Support #2317: Release the Statistical Algorithms Importer
Gianpaolo Coro wrote:
> SAI has been tested in the pre-prod, dev and dev3 environments. It works and is ready to be ... Roberto Cirillo
03:46 PM Support #2317: Release the Statistical Algorithms Importer
SAI has been tested and is ready to be released. Gianpaolo Coro
11:54 AM Incident #2400 (Closed): TabularDataLab import CSV Error
the uri resolver resource was missing in the /d4science.research-infrastructures.eu/gCubeApps/TabularDataLab scope Lucio Lelii
11:43 AM Incident #2400 (Closed): TabularDataLab import CSV Error
An error occured in import CSV: Error in CSV Import: the uri resolver resource is not present on IS in scope: /d4scie... Massimiliano Assante

Feb 25, 2016

05:15 PM Support #2317: Release the Statistical Algorithms Importer
SAI has been tested in the pre-prod, dev and dev3 environments. It works and is ready to be put in the production env... Gianpaolo Coro
02:16 PM Support #2317: Release the Statistical Algorithms Importer
A new build of SAI is ready on dev and dev3 for test. Giancarlo Panichi
11:10 AM Support #2317: Release the Statistical Algorithms Importer
Last version of Workspace Explorer was released yesterday. See:https://support.d4science.org/issues/2348. Last night ... Francesco Mangiacrapa
10:28 AM Support #2317: Release the Statistical Algorithms Importer
Yesterday we tested SAI on the dev portal but we discovered that the workspace explorer was not updated.
Please @fr... Gianpaolo Coro
12:38 PM Task #2353: upgrade all devsec node with components released in 3.10
The following link contains the instructions to clean a ghn and upgrade it to the 6.0.0-3.10.0 version.
~~~
https... Roberto Cirillo
11:37 AM Task #2353 (Closed): upgrade all devsec node with components released in 3.10
ghns to upgrade with gcf-distribution-6.0.0-3.10 are :
dlib01.isti.cnr.it:8080
node1-d-d4s.d4science.org:8080
th... Lucio Lelii
12:37 PM Task #2174: Dataminer and Statistical Manager packages
#Additional Package for VPA Workflow
install.packages('ncdf4') Gianpaolo Coro
12:30 PM Task #2360 (Closed): new VM for hosting Registry and Notifier instances
The new VM should host the Registry and Notifier gCube services for /gcube/preprod VO.
It's need:
3 GB ram
2 v... Roberto Cirillo
10:58 AM Task #2352 (Closed): new VM for IS-Collector instance
The new VM should host the IS-Collector instance for VO /gcube/preprod.
It's need:
* 4 GB ram
* 4 vcpu
... Roberto Cirillo
10:49 AM Task #2351 (Closed): Create new VO "/gcube/preprod" in development environment
The new VO should contains a set of most important gcube services and it should be use for integration tests. Roberto Cirillo

Feb 24, 2016

12:34 PM Task #2122: enable external and internal authentication on mongodb
This activity has not been performed for an incompatibility between storage-manager-core library and the MongoDB auth... Roberto Cirillo
12:11 PM Support #1289 (Closed): Storage-MongoDB: enable authentication on MongoDB version 2.6
This activity has been postponed to version 3.0 as decribed in this ticket: #2122 Roberto Cirillo
11:59 AM Task #449 (Closed): New root VO creation for pre production
The problem is due to an error in the exist backup procedure started at 00:00 AM.
I've restored the db and deleted t... Roberto Cirillo
10:07 AM Task #449: New root VO creation for pre production
I see a SoapFaultException from monitor, now. The IS-Collector has been restarted? Roberto Cirillo
09:42 AM Support #2317: Release the Statistical Algorithms Importer
SAI, statistical-algorithms-importer-1.0.0-3.10.1 is ready on dev and dev3 for test.
 Giancarlo Panichi

Feb 23, 2016

05:46 PM Task #449: New root VO creation for pre production
The problem has been fixed.
Now all the containers are correctly registered to the infrastructure.
There is another... Roberto Cirillo

Feb 22, 2016

08:08 PM Task #449: New root VO creation for pre production
In the past we no longer activated the procedure since most (if not all) the problems we had were related to network ... Paolo Fabriani
04:24 PM Task #449: New root VO creation for pre production
Two months ago I was saying the following:
The deployment of a newly created infrastructure requires a proper conf... Pasquale Pagano
03:13 PM Task #449: New root VO creation for pre production
I'm sorry but I don't know. One line of log is not enough for an analysis. What log is it? What container is it?
Roberto Cirillo
12:41 PM Task #449: New root VO creation for pre production
We also noticed that, but we couldn't find any clue in the logs. I do not see any exception, but I see few of these m... Gabriele Giammatteo
11:48 AM Task #449: New root VO creation for pre production
That's a very good news, however from what I see in the monitor http://d4science4.esl.eng.it/web/guest/monitor it see... Massimiliano Assante
11:40 AM Task #449: New root VO creation for pre production
I'm glad to inform you that a new "GenericResource" resource has been correctly registered on preproduction infrastru... Roberto Cirillo
06:25 PM Task #2341 (Closed): Nagios: remove checks on dl16.di.uoa.gr and dl21.di.uoa.gr
The hosts in the object have been dismissed. Please remove nagios checks. Roberto Cirillo

Feb 19, 2016

07:19 PM Task #1919: dismiss node1.p.cassandra.research-infrastructures.eu and node2.p.cassandra.research-infrastructures.eu
nagios check must be moved to new cassandra production nodes Tommaso Piccioli
12:03 PM Task #1919: dismiss node1.p.cassandra.research-infrastructures.eu and node2.p.cassandra.research-infrastructures.eu
Tom, you can dismiss the 2 cassandra nodes in the subject Massimiliano Assante
11:09 AM Support #2317 (Closed): Release the Statistical Algorithms Importer
The SAI portlet needs to be released in the BiodiversityLab and in the StockAssessment VREs.
As release action plan ... Gianpaolo Coro

Feb 18, 2016

09:38 PM Support #2299 (Closed): Install DataMiner on the production machines for 3.10
It works! Both are in production environment. Gianpaolo Coro
09:10 PM Support #2299: Install DataMiner on the production machines for 3.10
I also imported into the pom.xml used by the playbook the dependencies that you sent me:
~~~
<dependency>
... Andrea Dell'Amico
08:51 PM Support #2299: Install DataMiner on the production machines for 3.10
This one happens on all the dataminer installation when tomcat starts. I told you on skype the other day about it. It... Andrea Dell'Amico
05:24 PM Support #2299: Install DataMiner on the production machines for 3.10
It seems to be an issue with the javaassist lib of tomcat. Did you meet this error previously?
~~~
2016-02-18 14:... Gianpaolo Coro
02:48 PM Support #2299: Install DataMiner on the production machines for 3.10
The tomcat on dataminer1-p-d4s doesn't start or does not respond (no logging and no answers from the applications). M... Gianpaolo Coro
02:24 PM Support #2299 (Feedback): Install DataMiner on the production machines for 3.10
dataminer1-p-d4s's upgrade is finished. I shut down the container.
 Andrea Dell'Amico
02:17 PM Support #2299 (In Progress): Install DataMiner on the production machines for 3.10
I'm starting the deploy of dataminer1-p
 Andrea Dell'Amico
12:39 PM Support #2299: Install DataMiner on the production machines for 3.10
dataminer2-p-d4s.d4science.org works correctly! dataminer1-p has been shutdown, so that dataminer2 responds to datami... Gianpaolo Coro
12:32 PM Support #2299: Install DataMiner on the production machines for 3.10
The script is there, a tag was missing and it was excluded from the upgrade tasks list.
Now it's fixed and the keys ... Andrea Dell'Amico
12:21 PM Support #2299: Install DataMiner on the production machines for 3.10
The following keys should be placed in the tomcat/webapps/wps/ecocfg/PARALLEL_PROCESSING/ folder to make all algorith... Gianpaolo Coro
11:44 AM Support #2299: Install DataMiner on the production machines for 3.10
dataminer2-p-d4s.d4science.org is updated already, as I wrote yesterday. You only need to start the tomcat instance t... Andrea Dell'Amico
11:39 AM Support #2299 (Closed): Install DataMiner on the production machines for 3.10
DataMiner should be installed, one machine at time, on the production environment machines:
~~~
dataminer1-p-d4s.... Gianpaolo Coro
05:40 PM Task #2306: Customize http://dataminer.d4science.org/wps/
You are more expert than me on this. That is a simple index.hml page, please could you suggest me one alternative? Gianpaolo Coro
04:33 PM Task #2306: Customize http://dataminer.d4science.org/wps/

We should not confuse the software license with the content of a webpage that results from an operational instance ... Leonardo Candela
04:05 PM Task #2306: Customize http://dataminer.d4science.org/wps/
That's my interpretation of this phrase in the license page: all contributors sign a Contributors License Agreement (... Gianpaolo Coro
03:36 PM Task #2306: Customize http://dataminer.d4science.org/wps/
Gianpaolo Coro wrote:
> That's only a tomcat html page of the WPS application, which must refer to 52North because o... Pasquale Pagano
03:14 PM Task #2306: Customize http://dataminer.d4science.org/wps/
That's only a tomcat html page of the WPS application, which must refer to 52North because of their policies.
Whe... Gianpaolo Coro
03:04 PM Task #2306 (Closed): Customize http://dataminer.d4science.org/wps/
The content made available at the following URI http://dataminer.d4science.org/wps/ should be customized, it is curre... Leonardo Candela
02:30 PM Incident #2287: registry-publisher-1.2.6-3.10.1.jar still contains the broken log4j.properties
Thanks. I removed the workaround from the playbook.
I cannot test it on the production dataminer, but I think we can... Andrea Dell'Amico
02:24 PM Incident #2287 (Resolved): registry-publisher-1.2.6-3.10.1.jar still contains the broken log4j.properties
The new smartgears-distribution version: 1.2.7-3.10.1, is now available on nexus. (repository gcube-staging).
This n... Roberto Cirillo
12:34 PM Incident #2287 (In Progress): registry-publisher-1.2.6-3.10.1.jar still contains the broken log4j.properties
Roberto Cirillo
01:04 AM Incident #2287 (Closed): registry-publisher-1.2.6-3.10.1.jar still contains the broken log4j.properties
registry-publisher-1.2.6-3.10.1.jar as found in the smartgears 1.2.7-3.10.1 distribution still carry the log4j.proper... Andrea Dell'Amico
11:10 AM Support #2293 (Resolved): spd-client-library-3.1.1-3.10.0.jar contains broken log4j.properties
Lucio Lelii
11:04 AM Support #2293 (In Progress): spd-client-library-3.1.1-3.10.0.jar contains broken log4j.properties
Lucio Lelii
10:47 AM Support #2293 (Closed): spd-client-library-3.1.1-3.10.0.jar contains broken log4j.properties
Gianpaolo Coro
01:45 AM Task #2174: Dataminer and Statistical Manager packages
Those R packages and their dependencies are installed on all the dataminer (dev and prod) and all the statistical man... Andrea Dell'Amico

Feb 17, 2016

09:00 PM Task #449: New root VO creation for pre production
@massimiliano.assante@isti.cnr.it @roberto.cirillo@isti.cnr.it @paolo.fabriani@eng.it we should be ready for another ... Daniele Pavia
05:59 PM Task #449: New root VO creation for pre production
Reported issues seems to be solved.
@daniele.pavia@eng.it, is there any further issue blocking @roberto.cirillo@i... Paolo Fabriani
06:43 PM Task #2263 (Closed): nagios check for the jackrabbit services
Andrea Dell'Amico
06:42 PM Task #2263 (In Progress): nagios check for the jackrabbit services
The check is now active.
 Andrea Dell'Amico
05:33 PM Task #2263: nagios check for the jackrabbit services
We can use the url: http://node76.p.d4science.research-infrastructures.eu:8080/home-library-webapp/repository/default... Valentina Marioli

Feb 16, 2016

06:53 PM Task #2275 (Closed): Try foreman with the ansible plugin as an ansible console
It seems that is now possible to log the ansible activities using foreman: http://theforeman.org/plugins/foreman_ansi... Andrea Dell'Amico
05:41 PM Task #2174: Dataminer and Statistical Manager packages
The FLa4a R package needs the following debs:
~~~
- gsl-bin
- libgsl0-dev
~~~ Andrea Dell'Amico
02:41 PM Task #1802: Provide 2 new VMs for hosting Cassandra in pre production environment
@paolo.fabriani@eng.it , was the physical migration of the infrastructure to a different site complete? Massimiliano Assante
02:39 PM Task #449: New root VO creation for pre production
@daniele.pavia@eng.it or @paolo.fabriani@eng.it could you please update the status of this activity by reporting the ... Massimiliano Assante
02:33 PM Support #2180 (Closed): Weird "successful connection" message while RSG service is unavailable
specific RSG exceptions are bubbled up to the interface (Reports Manager), but I can only suggest you to see how Fabi... Massimiliano Assante
12:05 PM Upgrade #2045 (Closed): D4Science Gateways 2nd upgrade to gCube 3.10.0
Massimiliano Assante
12:05 PM Upgrade #2045 (Completed): D4Science Gateways 2nd upgrade to gCube 3.10.0
Massimiliano Assante
11:04 AM Task #2263 (Closed): nagios check for the jackrabbit services
Can you provide a URL to verify if it's working?
 Andrea Dell'Amico

Feb 15, 2016

08:38 PM Task #2261: Better check for data.d4science.org availability
@roberto.cirillo@isti.cnr.it @francesco.mangiacrapa@isti.cnr.it can you provide such URLs?
 Andrea Dell'Amico
08:37 PM Task #2261 (Closed): Better check for data.d4science.org availability
Right now there's only a simple tcp check on port 80.
It would be better to have a URL for each of the applications ... Andrea Dell'Amico
08:28 PM Task #2259 (Closed): New VM for data.d4science.org (production)
Andrea Dell'Amico
08:27 PM Task #2259: New VM for data.d4science.org (production)
It runs on dlib28x, while the old run on dlib17x (can be useful if we need to resurrect it)
 Andrea Dell'Amico
08:27 PM Task #2259 (In Progress): New VM for data.d4science.org (production)
The VM is alive and provisioned. Andrea Dell'Amico
08:26 PM Task #2259 (Closed): New VM for data.d4science.org (production)
A new VM is needed with the same hostname and IP of the old one, so that we can switch back easily if problems arise.... Andrea Dell'Amico
06:49 PM Upgrade #1913: gCubeApps VO upgrade to gCube 3.10.0
Kostas Kakaletris wrote:
> Roberto Cirillo wrote:
> > **Hosting Nodes**
> >
> >
> > *GHN to dismiss*
> >
> ... Kostas Kakaletris
06:21 PM Upgrade #1913: gCubeApps VO upgrade to gCube 3.10.0
Roberto Cirillo wrote:
> **Hosting Nodes**
>
>
> *GHN to dismiss*
>
> * **(NKUA) DONE** dl21.di.uoa.gr (Per... Kostas Kakaletris
06:14 PM Upgrade #2045 (In Progress): D4Science Gateways 2nd upgrade to gCube 3.10.0
Massimiliano Assante
06:09 PM Task #1921 (Feedback): Copy production keyspace onto new cassandra production cluster
Costantino Perciante
04:33 PM Upgrade #1923 (Closed): preprod.d4science.org 2nd upgrade to gCube 3.10.0
Massimiliano Assante
04:13 PM Task #2110: Please provide new VM with Elastic Search
Done.
 Andrea Dell'Amico
04:02 PM Task #2110: Please provide new VM with Elastic Search
Can we open the port 9300 too? I need it to contact elasticsearch from java. Thanks Costantino Perciante
03:44 PM Task #2110 (Feedback): Please provide new VM with Elastic Search
The service is up and running, listening on port 9200 (the default).
The configuration is provisioned and overwrites... Andrea Dell'Amico
03:41 PM Task #2174 (In Progress): Dataminer and Statistical Manager packages
#MONO Installation (#2173)
on Ubuntu 12.04.5 LTS, the following two packages are required to run EwECmd.exe
~~~
... Gianpaolo Coro
03:39 PM Task #2173: Report the installation steps for Mono
on Ubuntu 12.04.5 LTS, the following two packages are sufficient to run EwECmd.exe:
* mono-runtime
* libmono-micr... Paolo Fabriani
02:54 PM Task #2173 (In Progress): Report the installation steps for Mono
Paolo Fabriani
01:15 PM Task #1015 (Closed): Add GIS layers from Slovenia to EGIP catalogue
Gianpaolo Coro

Feb 12, 2016

06:03 PM Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
And it seems that fluentd can collect the syslog output and feed it to influxdb: http://www.fluentd.org/guides/recipe... Andrea Dell'Amico
05:58 PM Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
http://www.collectd.org and http://www.fluentd.org can talk with influxdb (and other backends) and seem to offer a wi... Andrea Dell'Amico
05:38 PM Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
It seems better suited to collect application and system metrics and maybe send alerts based on them. While ELK seems... Andrea Dell'Amico
05:31 PM Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
A preliminar dashboard can be used here: node0-monitoring.research-infrastructures.eu
Beware that there's no authen... Andrea Dell'Amico
06:00 PM Support #2113 (Feedback): Add Rights status to documents
Hi Sheena,
what you are asking for is quite an interesting request for enhancement.
Currently we manage rights at f... Pasquale Pagano
05:55 PM Task #2110: Please provide new VM with Elastic Search
The IP address is going to be 146.48.123.142
 Andrea Dell'Amico
05:39 PM Task #2110: Please provide new VM with Elastic Search
yes it is. Massimiliano Assante
05:30 PM Task #2110 (In Progress): Please provide new VM with Elastic Search
Is elastic0-d-d4s.d4science.org an acceptable hostname?
 Andrea Dell'Amico
03:23 PM Upgrade #1911: D4Science Infrastructure Upgrade to gCube 3.10.0
due to changes in a related task Roberto Cirillo
11:06 AM Task #2121 (Closed): upgrade cluster mongodb to version 3.0
mongo1, mongo2, mongo3, have been upgraded to version 3.0.9.
all the nodes except for mongo2, run with the new sto... Roberto Cirillo

Feb 11, 2016

06:16 PM Task #2221 (In Progress): Experiment with a new monitoring/metrics tool: influxdata (influxdb)
Andrea Dell'Amico
06:13 PM Task #2228 (Closed): Nagios: renamining VM for mongodb nodes
I agree with you Roberto Cirillo
05:44 PM Task #2228: Nagios: renamining VM for mongodb nodes
The mongodb check has been fixed.
@tommaso.piccioli@isti.cnr.it tells me that mongo6 is an instance only used when... Andrea Dell'Amico
03:54 PM Task #2228: Nagios: renamining VM for mongodb nodes
Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > And now we have some errors and warnings.
>
> The warnings... Andrea Dell'Amico
03:53 PM Task #2228: Nagios: renamining VM for mongodb nodes
Roberto Cirillo wrote:
> mongo6 is a backup node it isn't attached to the replicaSet system. Of course, you can rena... Roberto Cirillo
03:34 PM Task #2228: Nagios: renamining VM for mongodb nodes
Andrea Dell'Amico wrote:
> And now we have some errors and warnings.
The warnings are due to the upgrade of the n... Roberto Cirillo
03:31 PM Task #2228: Nagios: renamining VM for mongodb nodes
mongo6 is a backup node it isn't attached to the replicaSet system. Of course, you can rename it as mongo6.
(You mea... Roberto Cirillo
02:14 PM Task #2228: Nagios: renamining VM for mongodb nodes
And now we have some errors and warnings. Andrea Dell'Amico
02:12 PM Task #2228 (Feedback): Nagios: renamining VM for mongodb nodes
I changed the other hostnames.
 Andrea Dell'Amico
01:56 PM Task #2228 (In Progress): Nagios: renamining VM for mongodb nodes

What about this one?:
~~~
mongo6-p-d4s.d4science.org
#node85.p.d4science.research-infrastructures.eu
~~~ Andrea Dell'Amico
05:45 PM Task #1450 (Closed): nagios monitoring for the new mongodb production cluster
The nagios check has been adapted.
 Andrea Dell'Amico
03:05 PM Support #2180: Weird "successful connection" message while RSG service is unavailable
Ok, it's clear now how you check the connection. I also agree that you can't check all possible REST operations in th... Emmanuel Blondel
02:53 PM Support #2180: Weird "successful connection" message while RSG service is unavailable
The page at http://figisapps.fao.org/figis/secure-reports-store-gateway/ is a courtesy page deployed together with th... Massimiliano Assante
12:17 PM Support #2180: Weird "successful connection" message while RSG service is unavailable
Thanks for your prompt support.
I'm not sure that the page http://figisapps.fao.org/figis/secure-reports-store-gatew... Emmanuel Blondel
02:40 PM Task #2121: upgrade cluster mongodb to version 3.0
mongo4 has been upgraded to version 3.0.9 Roberto Cirillo

Feb 10, 2016

05:30 PM Task #2228 (Closed): Nagios: renamining VM for mongodb nodes
nagios shows the old names for mongodb nodes:
~~~
node58.p.d4science.research-infrastructures.eu
node67.p.d4scienc... Roberto Cirillo
05:24 PM Task #2227 (Closed): test replication tools for postgres
install and test one of the tools for postgreSQL replication reported here https://wiki.postgresql.org/wiki/Replicati... Lucio Lelii
01:43 PM Task #2162 (Closed): Change the linux_raid nagios plugin
Changed everywhere.
 Andrea Dell'Amico
01:43 PM Task #2162 (In Progress): Change the linux_raid nagios plugin
Andrea Dell'Amico
12:26 PM Task #1854: Tool for usage statistics on DataMiner
And influxdata could be even better, see https://support.d4science.org/issues/2221
 Andrea Dell'Amico
12:21 PM Task #449: New root VO creation for pre production
Is the preproduction root VO working properly? Please provide an update on this activity @daniele.pavia@eng.it @rober... Massimiliano Assante
12:04 PM Task #2221 (Closed): Experiment with a new monitoring/metrics tool: influxdata (influxdb)
The tool is promising:
* All the components are free software (they sell managed services and consulting)
* Can d... Andrea Dell'Amico
11:57 AM Task #2165 (Closed): Please Remove authentication token from gcube wiki
I forget to update this ticket, sorry.
I'm going to close this ticket.
 Luca Frosini
11:56 AM Task #2165 (Feedback): Please Remove authentication token from gcube wiki
Andrea Dell'Amico
11:56 AM Task #2165 (In Progress): Please Remove authentication token from gcube wiki
Yesterday we saw that to get rid of the token requirement implies heavy changes to the mediawiki sources. I don't thi... Andrea Dell'Amico
11:54 AM Task #2178 (Closed): Replace the cm.research-infrastructures.eu ssh key
The new key has been generated. A run of the `common` ansible playbook is needed to have it provisioned on the VMs.
 Andrea Dell'Amico
11:52 AM Task #2220 (Closed): Configure the provisioned smartgears nodes with a web proxy in front of them
The goal is to only expose ports 80 or 443 (hopefully 443 only in the near future).
 Andrea Dell'Amico
10:46 AM Task #2121 (In Progress): upgrade cluster mongodb to version 3.0
mongo5 has been upgraded to version 3.0.9. and resynced with the other members. Now it is running with the new storag... Roberto Cirillo

Feb 09, 2016

07:38 PM Task #2192 (Feedback): Gcc and boost installation
For the record, the installed tool comes from this git repository: `http://quickrank.isti.cnr.it/?page_id=11` and it ... Andrea Dell'Amico
07:32 PM Task #2192: Gcc and boost installation
I've found out that there's a repo for newer versions of the gcc tools. With g++4.8 (and a modification to the makefi... Andrea Dell'Amico
07:18 PM Task #2192: Gcc and boost installation
No, there's a repo for boost 1.55. I'm going to install it, then I'll download and try to compile the quickrank packa... Andrea Dell'Amico
06:54 PM Task #2192 (In Progress): Gcc and boost installation
Ubuntu precise is too old to satisfy your requirements. On Ubuntu 12.04 gcc 4.6 and boost 1.46 are available.
 Andrea Dell'Amico
05:15 PM Task #2192 (Closed): Gcc and boost installation
gcc 4.9 and boost (>= 1.55) are required on the statistical-manager.d machine Gianpaolo Coro
05:55 PM Task #2193 (Closed): Nagios check for the Dataminer service
They are working.
 Andrea Dell'Amico
05:49 PM Task #2193 (Feedback): Nagios check for the Dataminer service
The checks are pending.
 Andrea Dell'Amico
05:39 PM Task #2193 (In Progress): Nagios check for the Dataminer service
Andrea Dell'Amico
05:27 PM Task #2193 (Closed): Nagios check for the Dataminer service
The URL: `http://dataminer.d4science.org/wps/WebProcessingService?Request=GetCapabilities&Service=WPS&gcube-token=<VA... Andrea Dell'Amico
05:51 PM Task #2189 (Feedback): Deploy Tabular Data Manager service to gCubeApps/StockAssessmentVRE
The tabulardata service is ready to use. @gianpaolo.coro@isti.cnr.it, @massimiliano.assante@isti.cnr.it Please tell ... Roberto Cirillo
03:22 PM Task #2189 (Closed): Deploy Tabular Data Manager service to gCubeApps/StockAssessmentVRE
Massimiliano Assante
05:24 PM Task #2190 (Closed): ic-proxy service should be monitored by nagios
Andrea Dell'Amico
05:10 PM Task #2190 (Feedback): ic-proxy service should be monitored by nagios
Done, waiting for the first check result to appear.
 Andrea Dell'Amico
04:44 PM Task #2190 (In Progress): ic-proxy service should be monitored by nagios
Andrea Dell'Amico
04:38 PM Task #2190: ic-proxy service should be monitored by nagios
you could use this url for a more specific test:
http://node79.d4science.org/icproxy/gcube/resource/ Roberto Cirillo
03:37 PM Task #2190: ic-proxy service should be monitored by nagios
Can you provide a functional URL? that way a single check can cover the nginx, tomcat and service status.
 Andrea Dell'Amico
03:24 PM Task #2190 (Closed): ic-proxy service should be monitored by nagios
The IC-Proxy service should be monitored by nagios.
This service is hosted on "node79.d4science.org" and running on ... Roberto Cirillo
04:31 PM Task #2181 (Closed): Enable ganglia monitoring on mongodb nodes in dev environment
It'ok Roberto Cirillo
02:00 PM Task #2181 (Feedback): Enable ganglia monitoring on mongodb nodes in dev environment
The ganglia cluster is up: http://monitoring.research-infrastructures.eu/ganglia/?c=D4science%20MongoDB%20DEV%20clust... Andrea Dell'Amico
01:54 PM Task #2181: Enable ganglia monitoring on mongodb nodes in dev environment
I see that mongo0-d-d4s.d4science.org does not exist as a hostname.
 Andrea Dell'Amico
01:48 PM Task #2181: Enable ganglia monitoring on mongodb nodes in dev environment
The ansible inventory lists
~~~
mongo0-d-d4s.d4science.org
mongo5-d-d4s.d4science.org
~~~
What's the correc... Andrea Dell'Amico
01:46 PM Task #2181 (In Progress): Enable ganglia monitoring on mongodb nodes in dev environment
Andrea Dell'Amico
10:27 AM Task #2181 (Closed): Enable ganglia monitoring on mongodb nodes in dev environment
As done for production environment, the mongodb nodes in development environment should be monitored by ganglia in th... Roberto Cirillo
02:54 PM Support #2180 (Feedback): Weird "successful connection" message while RSG service is unavailable
Emmanuel, right now the RSG WS is up ( see http://figisapps.fao.org/figis/secure-reports-store-gateway/) but some of ... Massimiliano Assante
10:24 AM Support #2180 (Closed): Weird "successful connection" message while RSG service is unavailable
When entering in the test VME report manager, we get a green message saying: "Succesfully connected to: <endpoint>" w... Emmanuel Blondel
01:38 PM Task #2178: Replace the cm.research-infrastructures.eu ssh key
Changed the xen-tools configuration on all the hypervisors.
 Andrea Dell'Amico

Feb 08, 2016

07:41 PM Task #2178: Replace the cm.research-infrastructures.eu ssh key
The new key should be only distributed via ansible and not provided on the new VMs by default. So only the already pr... Andrea Dell'Amico
07:39 PM Task #2178 (Closed): Replace the cm.research-infrastructures.eu ssh key
Change it with a new one, because only Marko knew the passphrase but he doesn't remember it anymore.
The key must ... Andrea Dell'Amico
05:01 PM Support #2090 (Closed): Upgrade R in d4science plateform to last version
Andrea Dell'Amico
04:26 PM Support #2090: Upgrade R in d4science plateform to last version
Installed that one too.
 Andrea Dell'Amico
04:03 PM Support #2090: Upgrade R in d4science plateform to last version
also the googleVis R package is required on the machines. Gianpaolo Coro
05:01 PM Task #2175 (Closed): Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org
On a Ubuntu 10.04.
Investigate if tomcat can run as an unprivileged user, too.
The R packages list and version is... Andrea Dell'Amico
03:17 PM Task #2174: Dataminer and Statistical Manager packages
Latest packages:
~~~
##Absence records##
wget https://cran.r-project.org/src/contrib/DBI_0.3.1.tar.gz
install.p... Gianpaolo Coro
03:16 PM Task #2174 (Closed): Dataminer and Statistical Manager packages
This ticket reports the packages and the software to be installed on the Dataminer and the Statistical Manager machin... Gianpaolo Coro
03:10 PM Task #2173 (Closed): Report the installation steps for Mono
The Mono installation steps should be reported in order to make them repeatable and automatisable. Gianpaolo Coro
02:30 PM Task #1918 (Closed): Create new Apache Cassandra cluster on production (3 VMs)
Massimiliano Assante
12:58 PM Task #1921 (In Progress): Copy production keyspace onto new cassandra production cluster
Massimiliano Assante
11:51 AM Task #2168 (Closed): Please upgrade disk quota on couchdb01-d-d4s.d4science.org and ouchdb02-d-d4s.d4science.org
Andrea Dell'Amico
11:50 AM Task #2168 (In Progress): Please upgrade disk quota on couchdb01-d-d4s.d4science.org and ouchdb02-d-d4s.d4science.org
I incremented the disk size of all the couchdb instances. The culprit are the couchdb and upstart log files.
The cou... Andrea Dell'Amico
11:36 AM Task #2168 (Closed): Please upgrade disk quota on couchdb01-d-d4s.d4science.org and ouchdb02-d-d4s.d4science.org
Luca Frosini

Feb 06, 2016

12:27 PM Task #2165: Please Remove authentication token from gcube wiki
Luca Frosini wrote:
> Unfortunately I don't know, but I'll take a look on the web
If you don't know already, I'll... Andrea Dell'Amico
12:23 PM Task #2165: Please Remove authentication token from gcube wiki
Unfortunately I don't know, but I'll take a look on the web Luca Frosini
12:37 AM Task #2165: Please Remove authentication token from gcube wiki
Do you know if there's a configuration option for the mediawiki ldap plugin or do I have to do a research?
 Andrea Dell'Amico

Feb 05, 2016

06:20 PM Task #2165 (Closed): Please Remove authentication token from gcube wiki
I have tryed to integrate wikimedia as tab in gcube vre:
https://services.d4science.org/group/gcube/wiki
This pag... Luca Frosini
03:28 PM Task #2162 (Closed): Change the linux_raid nagios plugin
The actual one does not understand when a volume is resyncing.
 Andrea Dell'Amico
01:20 PM Support #2090: Upgrade R in d4science plateform to last version
@andrea.dellamico@isti.cnr.it, could you please reproduce the same environment on rstudio.d.d4science.research-infras... Gianpaolo Coro
10:24 AM Task #293 (Closed): Make any Liferay user to access Redmine (through LDAP Credentials)
Massimiliano Assante

Feb 04, 2016

07:19 PM Task #1918 (In Progress): Create new Apache Cassandra cluster on production (3 VMs)
cassandra1-p-d4s.d4science.org
cassandra2-p-d4s.d4science.org
cassandra3-p-d4s.d4science.org
Up and ready
To ... Tommaso Piccioli
03:38 PM Task #2106 (Closed): Install Joomla for the new PUMA portal
Michele Artini
03:15 PM Task #2106 (Feedback): Install Joomla for the new PUMA portal
Andrea Dell'Amico
11:38 AM Support #2134 (Closed): Enhancing Statistical Manager performance
Several requests by BlueBRIDGE partners require running processes on the Statistical Manager (SM) machines. We are go... Gianpaolo Coro

Feb 03, 2016

04:42 PM Task #1417 (Closed): Add Cron Job to make "Redmine Issue Reminder plugin" working
I'm disabling it for the time being.
 Andrea Dell'Amico
04:38 PM Support #2090 (Feedback): Upgrade R in d4science plateform to last version
rstudio.d4science.org now runs R version 3.2.3. All the packages listed by Gianpaolo have been installed.
 Andrea Dell'Amico
03:54 PM Task #2123 (Closed): Edit the Storage-manager service endpoint
Replace the ip with hostname for every mongodb node Roberto Cirillo
03:46 PM Task #2122 (Closed): enable external and internal authentication on mongodb
This task should be performed after the mongodb upgrade to version 3.0.
The internal authentication is based on keyf... Roberto Cirillo
03:42 PM Task #2121 (Closed): upgrade cluster mongodb to version 3.0
The following mongodb nodes should be upgraded to version 3.0 by ansible:
~~~
mongo1-p-d4s.d4science.org
mongo2-... Roberto Cirillo

Feb 02, 2016

05:55 PM Task #2106: Install Joomla for the new PUMA portal
Done.
I did not understand from the documentation if it's possibile to configure memcached as the session cache. You... Andrea Dell'Amico
05:48 PM Task #2106: Install Joomla for the new PUMA portal
Ok, thanks.
Another requirement: can you install the php module for Mongo?
From deb package or using:
~~~
p... Michele Artini
02:43 PM Task #2106: Install Joomla for the new PUMA portal
I think that you can install it using the following command:
~~~
pecl install solr
~~~ Michele Artini
02:35 PM Task #2106 (In Progress): Install Joomla for the new PUMA portal
There is no deb package for the php solr plugin. I find references to this one: https://code.google.com/archive/p/so... Andrea Dell'Amico
12:24 PM Task #2106 (Closed): Install Joomla for the new PUMA portal
It is necessary to install Joomla on node0-d-puma.d4science.org, can you prepare it?
These are the requirements: h... Michele Artini
05:50 PM Support #2113 (Closed): Add Rights status to documents
This is a suggestion for an additional facility for D4Science.
Projects usually produce papers and articles for c... Sheena Bassett
04:23 PM Task #2110 (Closed): Please provide new VM with Elastic Search
A new VM having 4 cores, at least 2GB RAM and 50GB Disk. Elastic Search Version 2.1.1
Ssh access to me and Costant... Massimiliano Assante
03:08 PM Support #2090: Upgrade R in d4science plateform to last version
OK, thanks. Paul Taconet
12:41 PM Support #2090 (In Progress): Upgrade R in d4science plateform to last version
I can start working on it tomorrow morning, is it OK? Andrea Dell'Amico
12:23 PM Upgrade #1923 (Completed): preprod.d4science.org 2nd upgrade to gCube 3.10.0
Massimiliano Assante
10:05 AM Upgrade #1923 (In Progress): preprod.d4science.org 2nd upgrade to gCube 3.10.0
Massimiliano Assante
10:05 AM Upgrade #1923 (Planned): preprod.d4science.org 2nd upgrade to gCube 3.10.0
Massimiliano Assante
10:18 AM Upgrade #2045 (Planned): D4Science Gateways 2nd upgrade to gCube 3.10.0
Massimiliano Assante
 

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