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From Aug 18, 2015 to Sep 16, 2015

Sep 15, 2015

10:10 AM Task #578 (In Progress): Redmine Installation is slowing down
Luca Frosini
10:10 AM Task #578: Redmine Installation is slowing down
Thanks for your feedback. I noticed that is slowing down when many people work together on Redmine. I know that this ... Luca Frosini

Sep 14, 2015

05:33 PM Task #578: Redmine Installation is slowing down
Note that the /projects URL spends most of the time rendering the base layer, so we should take into account that the... Andrea Dell'Amico
05:27 PM Task #578: Redmine Installation is slowing down
And please note that each plugin adds an overhead that can be significant. Here is the log from my last edit (the PUT... Andrea Dell'Amico
05:24 PM Task #578: Redmine Installation is slowing down
Do you have any specific example? The only problematic URL that I see now is the /projects one, that needs a bit more... Andrea Dell'Amico
12:25 PM Support #645 (Closed): GenericWorkers not working in DEV environment
This issues depends on ticket #278 and on huge message spam produced by the old accounting system. Gianpaolo Coro
12:05 PM Support #589 (Paused): StorageManager library: upgrade java driver library to version 3.0
Roberto Cirillo

Sep 13, 2015

04:01 PM Task #578: Redmine Installation is slowing down
I'm working at home and the system the performances are quite the same of the one I experience at CNR.
Seems that th...
Luca Frosini
03:32 PM Task #578: Redmine Installation is slowing down
Accessing the system from a commercial internet provider (home connection) is frustrating.
Response time are extreme...
Franco Zoppi

Sep 11, 2015

07:04 PM Support #645 (Closed): GenericWorkers not working in DEV environment
The GenericWorkers with SmartExecutor running on the following machines are not working:
node6.d4science.org 9000 ...
Gianpaolo Coro
05:45 PM Task #422: Report libraries and configuration components for DataMiner
The DataMiner installation Wiki is complete and needs to be tested on a new machine.
Gianpaolo Coro
05:33 PM Support #588 (Closed): upgrade cluster mongodb to version 2.6
Roberto Cirillo
05:33 PM Support #588: upgrade cluster mongodb to version 2.6
reminder:
* the new mongodb v 2.6.11 has another configuration file: /etc/mongod.conf
* is needed to comment the ...
Roberto Cirillo
05:25 PM Support #588 (In Progress): upgrade cluster mongodb to version 2.6
The cluster has been upgraded to version 2.6.11 Roberto Cirillo
11:16 AM Support #588 (Closed): upgrade cluster mongodb to version 2.6
Roberto Cirillo
12:44 PM Support #589: StorageManager library: upgrade java driver library to version 3.0
The new java-driver has been integrated in the storage-manager library and the tests performed on mongodb 2.4 are goi... Roberto Cirillo
11:42 AM Support #589 (In Progress): StorageManager library: upgrade java driver library to version 3.0
Roberto Cirillo
11:21 AM Support #589 (Closed): StorageManager library: upgrade java driver library to version 3.0
As described in the official documentation: http://docs.mongodb.org/ecosystem/drivers/driver-compatibility-reference/... Roberto Cirillo
11:59 AM Support #599 (Closed): Storage-manager-trigger for accounting: verify oplog compatibility for mongodb version 3.0
The storage-manager-trigger accounting uses the system collection called oplog.
Verify the compatibility with new mo...
Roberto Cirillo
11:34 AM Support #590 (Closed): Upgrade mongoDB dev node to ubuntu 14.04
Tommaso Piccioli
11:14 AM Support #587 (Closed): Upgrade cluster mongodb to version 2.6 with authentication
The current version of mongodb is 2.4.3. First, we must upgrade mongodb to version 2.6 and after we could upgrade mon... Roberto Cirillo
10:48 AM Support #571 (Closed): VREs and VOs user statistics
thank you, I'll take these in account for the presentation. In the meanwhile, if you have other material you'd like t... Gabriele Giammatteo
10:37 AM Task #564 (Closed): clean mongodb cluster on dev environment
The new dev cluster is complete.
For every member the OS has been upgraded and the log rotation has been enabled
Roberto Cirillo

Sep 10, 2015

05:56 PM Support #353: Uri resolver: URL_REWRITE for data.d4science.org
Currently, the above rewrite rules are working in dev environment.
In production environment the Uri Resolver will b...
Francesco Mangiacrapa
05:36 PM Task #515 (Closed): Investigate Redmine Plugin For Reports
Yes, the tool supports MySQL only. There is option to use another DB. Gianpaolo Coro
03:01 PM Support #571: VREs and VOs user statistics
FARM VRE users: 114
gCubeApps VRE users: 1.134
ISTI VRE users: 827
Total: 2.075
Massimiliano Assante
12:46 PM Support #571 (Feedback): VREs and VOs user statistics
I can give you the number of users per VO and VRE. What do you mean by number of resources and number of accesses? In... Massimiliano Assante
12:44 PM Support #571 (In Progress): VREs and VOs user statistics
Massimiliano Assante
12:43 PM Support #517 (Closed): Integrate Redmine in BlueBridgeProject VRE
Massimiliano Assante
11:32 AM Task #578 (Closed): Redmine Installation is slowing down
We should investigate why the installation is slowing down (to load a page takes up to 10 seconds): database response... Luca Frosini

Sep 09, 2015

05:51 PM Task #548 (In Progress): Log Rotation With Mongo
The same configuration adopted in the dev environment must be used for the prod hosts. Tommaso Piccioli
03:47 PM Task #548 (Closed): Log Rotation With Mongo
Roberto Cirillo
05:47 PM Task #564 (In Progress): clean mongodb cluster on dev environment
New host mongo1-d-d4s.d4science.org, ready to be configured to substitute node40.d.d4science.research-infrastructures.eu Tommaso Piccioli
03:44 PM Task #564 (Closed): clean mongodb cluster on dev environment
it works now. The clean is done. Roberto Cirillo
01:03 PM Task #564: clean mongodb cluster on dev environment
On the dev mongo cluster now we ave the same iptables rules of the prod mongo cluster Tommaso Piccioli
11:33 AM Task #564: clean mongodb cluster on dev environment
I've tried from my machine: 146.48.85.73 and it doesn't work . The networks should be allowed for the development clu... Roberto Cirillo
11:28 AM Task #564: clean mongodb cluster on dev environment
On mongo2-d-d4s.d4science.org and mongo3-d-d4s.d4science.org (and mongo1-d-d4s.d4science.org in the future) we can ha... Tommaso Piccioli
11:20 AM Task #564: clean mongodb cluster on dev environment
Port 27017 is open to the nemis network only:
~~~
10816 649K ACCEPT tcp -- * * 146.48.122.0/23 ...
Andrea Dell'Amico
10:25 AM Task #564: clean mongodb cluster on dev environment
The new members:
mongo2-d-d4s.d4science.org, mongo3-d-d4s.d4science.org are not able to receive connections from st...
Roberto Cirillo
03:55 PM Task #572 (Closed): Request for new FARM VRE, name WECAFC-FIRMS
WECAFC-FIRMS VRE is ready and functioning at the URL: https://i-marine.d4science.org/group/wecafc-firms
For the ti...
Massimiliano Assante
03:35 PM Task #572 (In Progress): Request for new FARM VRE, name WECAFC-FIRMS
Massimiliano Assante

Sep 08, 2015

07:01 PM Support #573 (Closed): Migrate support-social.isti.cnr.it on ISTI dom0
support-social.isti.cnr.it now is running on srv1-isti.isti.cnr.it xen dom0, svn data has been deleted on this server... Tommaso Piccioli
06:51 PM Support #573 (Closed): Migrate support-social.isti.cnr.it on ISTI dom0
Move support-social.isti.cnr.it service (all the host server) to srv1-isti.isti.cnr.it xen dom0 Tommaso Piccioli
06:45 PM Support #353: Uri resolver: URL_REWRITE for data.d4science.org
Any news?
Andrea Dell'Amico
06:09 PM Task #572: Request for new FARM VRE, name WECAFC-FIRMS
I see the logo proposed having a black background, we would need the logo to have either a white or a transparent bac... Massimiliano Assante
06:06 PM Task #572 (Closed): Request for new FARM VRE, name WECAFC-FIRMS
In the context of the “WECAFC project 2015-2016 - Strengthening national data collection and regional data sharing th... Massimiliano Assante
05:13 PM Support #571 (Closed): VREs and VOs user statistics
In view of the BlueBRIDGE kickoff, I and Roberto agreed that would probably be useful to show some statistics about V... Gabriele Giammatteo
03:36 PM Task #569 (Closed): Create Redirections from old ticketing instance to new Redmine installation
Now that task #172 is closed we should think about creating some permanent redirections (Permanently moved) if possib... Luca Frosini
03:24 PM Task #172 (Closed): Shut down the old d4science Trac instance
Seems that the ticket can be closed. We will open a new one to shut down an instance if we will find it. Luca Frosini
03:15 PM Task #172 (Feedback): Shut down the old d4science Trac instance
Andrea Dell'Amico
03:08 PM Task #172: Shut down the old d4science Trac instance
Massimiliano Assante wrote:
> https://issue.imarine.research-infrastructures.eu/ can be turned off
Done.
Andrea Dell'Amico
02:45 PM Task #172: Shut down the old d4science Trac instance
https://issue.imarine.research-infrastructures.eu/ can be turned off Massimiliano Assante
11:54 AM Task #515: Investigate Redmine Plugin For Reports
Gianpaolo Coro wrote:
> The software requires direct connection to the Redmine MySQL database.
> @andrea.dellamico ...
Andrea Dell'Amico
10:53 AM Task #515: Investigate Redmine Plugin For Reports
The software requires direct connection to the Redmine MySQL database.
@andrea.dellamico could you please share thes...
Gianpaolo Coro
10:28 AM Task #515 (Paused): Investigate Redmine Plugin For Reports
Luca Frosini
10:28 AM Task #515: Investigate Redmine Plugin For Reports
The available plugins produce report in terms of open, in progress, closed tickets, providing statistics regarding th... Luca Frosini
10:17 AM Task #515 (In Progress): Investigate Redmine Plugin For Reports
Luca Frosini
11:02 AM Task #564: clean mongodb cluster on dev environment
The new secondary member (mongo2-d-d4s.d4science.org) had completed the full resync to the primary member (node41.d.d... Roberto Cirillo
11:02 AM Task #564 (Closed): clean mongodb cluster on dev environment
The clean is done running a full resync on secondaries member one at a time,and after that, step-down the primary and... Roberto Cirillo

Sep 07, 2015

07:41 PM Support #547 (Feedback): message-broker: increase "open file limit"
Andrea Dell'Amico
12:36 PM Support #547 (In Progress): message-broker: increase "open file limit"
I doubled the soft limit and increased the hard limit to 54000. From /etc/security/limits.conf:
~~~
* soft ...
Andrea Dell'Amico
10:43 AM Support #547 (Closed): message-broker: increase "open file limit"
I've found a lot of exception like this:
~~~
2015-09-05 17:55:38,473 | ERROR | Could not accept connection : java.n...
Roberto Cirillo
04:10 PM Support #511: Publishing raster data via StatMan
An algorithm has been implemented that allows publishing raster data on the geospatial network of D4Science.
The a...
Gianpaolo Coro
01:03 PM Support #511: Publishing raster data via StatMan
The blocking issue has been solved, now it is possible to upload files on thredds and produce layers through GeoNetwo... Gianpaolo Coro
11:17 AM Support #511: Publishing raster data via StatMan
This issue is now blocked by ticket #549 Gianpaolo Coro
12:27 PM Task #488 (In Progress): Increment the message broker heap space
I added the following line to `/etc/default/activemq`:
ACTIVEMQ_OPTS_MEMORY=“-Xms2500m -Xmx2500m”
The service n...
Andrea Dell'Amico
11:13 AM Task #501 (Closed): Put some virtuoso directories under backup
All file system under backup except /data Tommaso Piccioli
10:57 AM Task #548 (Closed): Log Rotation With Mongo
mongodb single log file can grow without a limit
(there is a 2.7G mongo_log.txt on node41.d.d4science)
We could ...
Tommaso Piccioli

Sep 04, 2015

06:32 PM Support #511: Publishing raster data via StatMan
After investigating with Roberto, we found the issue was maily due to a transformation of smp URIs made by the class:... Gianpaolo Coro
01:08 PM Task #536: Thredds: tomcat runs as root
It's OK to me. Gianpaolo Coro
01:01 PM Task #536: Thredds: tomcat runs as root
Gianpaolo Coro wrote:
> Thredds is an old service installation that needs larger file system capacity with respect t...
Andrea Dell'Amico
12:57 PM Task #536: Thredds: tomcat runs as root
Thredds is an old service installation that needs larger file system capacity with respect to other services. It need... Gianpaolo Coro
12:56 PM Task #536: Thredds: tomcat runs as root
Andrea Dell'Amico wrote:
> Is it possibile to create one and perform some basic tests on it?
I guess it is possib...
Roberto Cirillo
12:52 PM Task #536: Thredds: tomcat runs as root
Is it possibile to create one and perform some basic tests on it?
Andrea Dell'Amico
12:51 PM Task #536: Thredds: tomcat runs as root
Andrea Dell'Amico wrote:
> As usual, I'd prefer to automate all the VM configuration. Is it possible? Is there a dev...
Roberto Cirillo
12:44 PM Task #536: Thredds: tomcat runs as root
As usual, I'd prefer to automate all the VM configuration. Is it possible? Is there a devel instance where we can tes... Andrea Dell'Amico
12:33 PM Task #536 (Closed): Thredds: tomcat runs as root
The tomcat on "thredds.d4science.org" has been installed under the user tomcat but it runs as root. Now it is configu... Roberto Cirillo
12:17 PM Support #510 (Feedback): Data Transfer on the THREDDS instance
The ghn has been installed with the Data-Transfer service under the gcube user, it runs under /gcube/devsec scope. Th... Roberto Cirillo
10:54 AM Support #510 (In Progress): Data Transfer on the THREDDS instance
Roberto Cirillo

Sep 03, 2015

08:04 PM Support #511: Publishing raster data via StatMan
Gianpaolo Coro wrote:
> A publication process core for GIS raster data has been implemented, but still requires data...
Pasquale Pagano
05:54 PM Support #511: Publishing raster data via StatMan
A publication process core for GIS raster data has been implemented, but still requires data transfer installation to... Gianpaolo Coro
06:17 PM Task #530: add storage manager service endpoint to new VREs at creation time
This task was already opened (issue #240). Lucio Lelii
11:56 AM Task #530 (Closed): add storage manager service endpoint to new VREs at creation time
Pasquale Pagano
06:16 PM Incident #401 (Resolved): Tabular Data Manager Portlet allows to Share Tabular Data Resources with the whole set of portal users
The fix seems work fine Francesco Mangiacrapa
12:20 PM Task #172: Shut down the old d4science Trac instance
Giuseppe Lipari wrote:
> Redbox Trac instance https://issue.redbox.research-infrastructures.eu/ can be turn off
D...
Andrea Dell'Amico
11:43 AM Task #172: Shut down the old d4science Trac instance
Redbox Trac instance https://issue.redbox.research-infrastructures.eu/ can be turn off Giuseppe Lipari
10:55 AM Task #172: Shut down the old d4science Trac instance
@massimiliano.assante can we turn off iMarine Trac instance available here https://issue.imarine.research-infrastruct... Luca Frosini
10:19 AM Task #172: Shut down the old d4science Trac instance
Luca Frosini wrote:
> I'm lost. What is still to be done?
I didn't have any news about the redbox and imarine Tra...
Andrea Dell'Amico
09:54 AM Task #172: Shut down the old d4science Trac instance
I'm lost. What is still to be done? Luca Frosini
11:47 AM Task #526 (Closed): add storage manager service endpoint to new BlueBridge VREs
Pasquale Pagano
11:04 AM Task #526: add storage manager service endpoint to new BlueBridge VREs
It seems ok Massimiliano Assante
10:48 AM Task #526 (Feedback): add storage manager service endpoint to new BlueBridge VREs
Could you check if all works now, please? Roberto Cirillo
10:37 AM Task #526 (In Progress): add storage manager service endpoint to new BlueBridge VREs
I'm going to add these resources but I think, the owner of this task should be the VREManager or the VRE Designer. Roberto Cirillo
10:33 AM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
They'll be needed for the production cluster when couchdb 2 will be ready. Until then they can be shut down or even r... Andrea Dell'Amico
10:25 AM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
hosts couch{01:04}-d4s.d4science.org still needed? Tommaso Piccioli
09:50 AM Task #110 (Closed): Create 3 Virtual Machine for developement to host new noSQL Db cluster
Luca Frosini
09:48 AM Task #85 (Closed): Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Luca Frosini
09:47 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Thanks Luca Frosini
09:48 AM Task #88 (Closed): Migrate gCube and D4Science WIKI content on new installation
Luca Frosini
09:47 AM Task #84 (Closed): Create new virtual machines to host gCube and DScience WIKI
Luca Frosini

Sep 02, 2015

11:13 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Luca Frosini wrote:
> Can you please also change the configuration file to point to this logo
> https://wiki.d4sci...
Andrea Dell'Amico
02:53 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Can you please also change the configuration file to point to this logo
https://wiki.d4science.org/images/4/4d/D4Sc...
Luca Frosini
06:13 PM Task #527 (Closed): Remove wrongly created scopes for the following VREs
Roberto Cirillo
05:53 PM Task #527 (In Progress): Remove wrongly created scopes for the following VREs
Roberto Cirillo
05:21 PM Task #527: Remove wrongly created scopes for the following VREs
A wrong method to undeploy the VRE (removeVRE) is called from the VREDeployment portlet.
The method to use is undepl...
Lucio Lelii
03:22 PM Task #527 (Closed): Remove wrongly created scopes for the following VREs
Unfortunately Lino created 3 VREs in gCubeApps with wrong name, they have been undeployed however it seems that for s... Massimiliano Assante
03:18 PM Task #526 (Closed): add storage manager service endpoint to new BlueBridge VREs
You can find the list here
https://i-marine.d4science.org/web/guest/virtual-research-environments
they're all d...
Massimiliano Assante

Sep 01, 2015

04:13 PM Support #517 (Resolved): Integrate Redmine in BlueBridgeProject VRE
BlueBridgeProject Issue Tracker integrated https://i-marine.d4science.org/group/bluebridgeproject/issue-tracker Massimiliano Assante
04:09 PM Support #517 (In Progress): Integrate Redmine in BlueBridgeProject VRE
Massimiliano Assante
04:09 PM Support #517 (Closed): Integrate Redmine in BlueBridgeProject VRE
Integrate Redmine in BlueBridgeProject VRE Massimiliano Assante
03:26 PM Task #515 (Closed): Investigate Redmine Plugin For Reports
Luca Frosini
11:38 AM Support #511 (Closed): Publishing raster data via StatMan
A process to publish raster data via StatMan is required. This will publish maps on GeoExplorer via GeoNetwork and Th... Gianpaolo Coro
11:35 AM Support #510 (Closed): Data Transfer on the THREDDS instance
A map production system for raster files needs to be implemented, which will publish GeoTIFFs and NetCDF files on Geo... Gianpaolo Coro

Aug 31, 2015

06:15 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Done. It seems OK now.
Andrea Dell'Amico
05:55 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
I just uploaded a 150x150 png image. Can you please fix LocalSettings.php as indicated in the link you provided?
htt...
Luca Frosini
05:34 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
I installed both the favicon.ico and the logo_squared.png files, but the logo seems too big and I don't find any medi... Andrea Dell'Amico
05:15 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
New gCube logo is available here:
https://goo.gl/cd26ky
Luca Frosini
05:01 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
The logo is now in place. Andrea Dell'Amico
05:08 PM Task #457: A new backup server
nb-bosio and nb-nardi needs some specific configuration on the client (probably firewall exceptions)
The backup of t...
Tommaso Piccioli
05:07 PM Task #457: A new backup server
Already added/moved to this backup server:
data.d4science.org
portal.eubrazilopenbio.d4science.org
newportal.i...
Tommaso Piccioli

Aug 28, 2015

11:25 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
The logo is missing. I am checking the web site. As soon as the logo will be added and the check is complete we will ... Pasquale Pagano
10:57 AM Task #85 (Feedback): Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Pasquale Pagano wrote:
> Since Kostas reported
> "
> I do not know if there are any changes from previous backup t...
Andrea Dell'Amico

Aug 27, 2015

07:57 PM Task #501 (Closed): Put some virtuoso directories under backup
The only place that needs backup is the /etc/virtuoso-opensource-7 directory Andrea Dell'Amico

Aug 26, 2015

04:36 PM Task #299: New VM to host a Virtuoso instance
By request of UBONN the default virtuoso configuration has been updated, see the attached file virtuoso.ini. The defa... Claudio Atzori

Aug 25, 2015

06:29 PM Task #493 (Closed): Duplicate GenericResources of type VRE in gCubeApps
In gCubeApps we have several duplicate for GenericResources of type VRE, this is probably due to the Resource Manager... Massimiliano Assante

Aug 24, 2015

06:57 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Since Kostas reported
"
I do not know if there are any changes from previous backup that I have uploaded to Andrea....
Pasquale Pagano
05:09 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

https://wiki.d4science.org is also up and running with the contents from the iMarine wiki.
I enabled the ldap auth...
Andrea Dell'Amico
05:03 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Pasquale Pagano wrote:
> Can you report the date of the backup you have restored?
August, 4:
ls -l /root/downl...
Andrea Dell'Amico
04:54 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Can you report the date of the backup you have restored? Pasquale Pagano
04:51 PM Task #449 (In Progress): New root VO creation for pre production
This is not a duplicate ticket, this ticket is meant to track the activity regarding the new Root VO Creation while t... Massimiliano Assante
04:14 PM Task #449 (Rejected): New root VO creation for pre production
Duplicated, see #451 Pasquale Pagano

Aug 23, 2015

12:43 PM Task #488 (Closed): Increment the message broker heap space
activemq expects 2.3 GB of usable memory but the reserved java heap space is set as the 2G default.
To effectively...
Andrea Dell'Amico
 

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