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From May 25, 2015 to Jun 23, 2015

Jun 23, 2015

07:34 PM Incident #295 (Closed): D4Science site down ...
While editing one of the pages of www.d4science.org the site start becoming unresponsive.
It is currently down.
...
Leonardo Candela
05:40 PM Task #110 (Feedback): Create 3 Virtual Machine for developement to host new noSQL Db cluster
Andrea Dell'Amico
05:40 PM Task #110 (In Progress): Create 3 Virtual Machine for developement to host new noSQL Db cluster
Andrea Dell'Amico
04:57 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
The three machines are configured. There is an admin user.
Andrea Dell'Amico
05:40 PM Task #279 (In Progress): Install the Fauxton couchdb interface
The git repo: https://github.com/apache/couchdb-fauxton Andrea Dell'Amico
05:32 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
@massimiliano.assante so you can patch liferay to insert in the "external" LDAP the users instead of creating only on... Luca Frosini
04:36 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Yes liferay can support more than one ldap server Massimiliano Assante
04:09 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Massimiliano Assante wrote:
> The Redmine instance for a given project should be accessed by any VRE user serving th...
Andrea Dell'Amico
03:26 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
For example the users belonging to the PARTHENOS VRE should be able to join the Redmine instance of Parthenos Massimiliano Assante
03:25 PM Task #293 (Closed): Make any Liferay user to access Redmine (through LDAP Credentials)
The Redmine instance for a given project should be accessed by any VRE user serving this project.
In this moment we...
Massimiliano Assante
05:10 PM Task #294 (Closed): SSL certificates for the couchdb cluster
Four cerficates are needed for the hosts:
couchdb01-d4s.d4science.org
couchdb02-d4s.d4science.org
couchdb03-d4s.d4...
Andrea Dell'Amico
04:49 PM Task #288: Deploy gCube Portal Bundle on descramble.d4science.org
The Portal Bundle was Deployed, configuration is in progress http://descramble.d4science.org Massimiliano Assante
12:16 PM Task #288 (In Progress): Deploy gCube Portal Bundle on descramble.d4science.org
Massimiliano Assante
12:14 PM Task #288 (Closed): Deploy gCube Portal Bundle on descramble.d4science.org
The descramble.d4science.org should me empowered by the gCube Portal Bundle Massimiliano Assante
04:24 PM Task #286 (Closed): Integrate algorithms developed by Brazilian student
The integration was successful also on the student's side. Gianpaolo Coro
01:11 PM Task #286 (In Progress): Integrate algorithms developed by Brazilian student
The algorithm has been integrated and is currently running in the PGFA-UFMT vre.
Here is the link to the StatMan in...
Gianpaolo Coro
10:45 AM Task #286 (Closed): Integrate algorithms developed by Brazilian student
A request came to integrate an algorithm developed by a Brazilian student on the PGFA-UFMT VRE. Gianpaolo Coro
03:24 PM Task #290: Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
EGI-Engage should be reported but not here. In this case we should report that D4Science exploits EGI FedCloud resour... Pasquale Pagano
03:14 PM Task #290 (Closed): Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
This page (https://www.d4science.org/empowering) should be modified by adding the new projects
* PARTHENOS
* DES...
Massimiliano Assante
12:15 PM Task #289 (Closed): Create Liferay Theme for Descramble Project VRE
A new Liferay 6.0 Theme should be created for supporting the Descramble Project VRE Massimiliano Assante
10:52 AM Task #287 (Closed): Integrate IRD-IFREMER stock assessment processes
A stock assessment process developed by IRD and IFREMER has to be integrated with StatMan and possibly parallelised. ... Gianpaolo Coro

Jun 22, 2015

06:48 PM Task #262 (Closed): Create new VM for descramble.d4science.org
descramble.d4science.org up and running
apache proxy reconfigured with new name and SSL certificate
Note that you m...
Tommaso Piccioli
10:28 AM Task #262: Create new VM for descramble.d4science.org
Tom, we need this VM asap Massimiliano Assante
06:48 PM Task #259 (Closed): Ask https certificate for descramble.d4science.org
Tommaso Piccioli
06:23 PM Task #259 (Resolved): Ask https certificate for descramble.d4science.org
Tommaso Piccioli

Jun 20, 2015

09:14 AM Support #280 (In Progress): ETICS down
DNS issues have been solved. The system is now accessible.
Please check from your side.
Paolo Fabriani

Jun 19, 2015

06:49 PM Task #172: Shut down the old d4science Trac instance
Pasquale Pagano wrote:
> Claudio/ Paolo, please tell us what to do with the following
> > driver.research-infrast...
Claudio Atzori
06:33 PM Task #172: Shut down the old d4science Trac instance
According to my knowledge
> d4science.research-infrastructures.eu
- to be dismissed
> gcore.research-infrastruc...
Pasquale Pagano
06:15 PM Incident #163 (Closed): Redmine - change the duration of the working day
Luca Frosini
05:55 PM Incident #171 (Closed): Recently updated file for gCubeApps/BlueBridgeProject Folder error
Valentina Marioli
05:45 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
Ok, thanks. This issue is therefore related to a bud in the HL. I suggest to close this ticket and open a specific on... Pasquale Pagano
05:15 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
The problem for "BlueBRIDGE_Part_B_Sec1-3 20150113.docx" file, has been identified:
if we try to move a file to anot...
Roberto Cirillo
05:54 PM Task #281 (Closed): Move to the D4Science.org domain from the Research infrastructure domain
The following machine should become available under the d4science.org domain
- http://maven.research-infrastructur...
Pasquale Pagano
05:15 PM Support #280: ETICS down
I got confirmation there are DNS problems at company level. The support team is currently working at it.
Paolo Fabriani
04:52 PM Support #280: ETICS down
The server and service are up; however they seem to be unreachable from the outside.
I'm asking support to the netwo...
Paolo Fabriani
04:34 PM Support #280 (Closed): ETICS down
The etics server seems to be down:
https://etics.esl.eng.it/etics-gui/
Could anyone check it, please?
Roberto Cirillo
03:53 PM Task #87: Make new gCube and D4Science wiki available only on https
The ssl certificates are in place. To enable ssl the needed steps are:
Set
~~~
http_ssl_enabled
~~~
to *True*
...
Andrea Dell'Amico
03:47 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Two mediawiki instances are now deployed on wiki.d4science.org. The root directories are:
~~~
ls -l /var/www/
...
Andrea Dell'Amico
03:16 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
The latest stable version has a PPA, here: https://launchpad.net/~couchdb/+archive/ubuntu/stable
Andrea Dell'Amico
03:13 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
The VMs will be: couch{01:03}-d4s.d4science.org.
The same cluster will serve devel and production.
Andrea Dell'Amico
02:17 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
Reference for couchdb can be found here
http://docs.couchdb.org/en/latest/cluster/theory.html
Luca Frosini
03:15 PM Task #279 (Closed): Install the Fauxton couchdb interface
On a dedicated machine. Needs node.js.
fauxton-d4s.d4science.org
Andrea Dell'Amico

Jun 18, 2015

04:35 PM Task #272 (In Progress): Enabling Secure Connections to node11.d.d4science.research-infrastructures.eu
Installed apache, mod-proxy, ajp enabled
Now the proxy answer on https://workspace-repository-dev.research-infrast...
Tommaso Piccioli
12:32 PM Task #272 (Closed): Enabling Secure Connections to node11.d.d4science.research-infrastructures.eu
Home Library 2.0 needs secure connections to pass Jackrabbit credentials from client to server.
Please, enable secur...
Valentina Marioli
12:04 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
History of "BlueBRIDGE_Part_B_Sec1-3 20150113.docx" in attachment. Valentina Marioli
10:50 AM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
No I wanted to recover another older backup but unfortunately we don't have a backup before the 31 January.
I've als...
Roberto Cirillo
11:37 AM Incident #258: TabMan - the files associated to the resources are downloaded without extension
We cannot assume here that file names always have or always miss extension (I think also it depends on the particular... Fabio Sinibaldi
10:59 AM Incident #258 (In Progress): TabMan - the files associated to the resources are downloaded without extension
If we determine that any resource that reaches the portlet has a name without an extension and a mimetype correct, th... Giancarlo Panichi
11:20 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
@andrea.dellamico as far as I know, we don't have any requirements in this sense. I think the best way is the simples... Luca Frosini
11:17 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Why me? Who is the owner of this activity? I don't have never worked on wiki media... but, of course, if I can help y... Roberto Cirillo
11:03 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
@roberto.cirillo can collaborate with @andrea.dellamico and @tommaso.piccioli for this task and the task #87 Luca Frosini

Jun 17, 2015

12:19 PM Task #87: Make new gCube and D4Science wiki available only on https
Remember that the configuration steps can chagne depending on the number of VMs. See ticket #85 Andrea Dell'Amico
11:46 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
Andrea Dell'Amico wrote:
> The two mediawiki instances will run on the same server or there will be two separate VMs...
Andrea Dell'Amico

Jun 16, 2015

05:36 PM Task #99 (Closed): run mongoDB as unprivileged user
done on all nodes, al mongodb now running as mongodb user, automatic start and stop script tested. Tommaso Piccioli
03:49 PM Task #259 (In Progress): Ask https certificate for descramble.d4science.org
SSL certificate requested Tommaso Piccioli
12:35 PM Task #259 (Closed): Ask https certificate for descramble.d4science.org
DESCRAMBLE Project to be hosted on the D4Science Infrastructure Massimiliano Assante
01:05 PM Task #262 (Closed): Create new VM for descramble.d4science.org
The VM should be a clone of egip.d4science.org Massimiliano Assante
11:22 AM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
I'm ready for testing CouchDB.
I'm going to read the deployment documentation for production environment to decide w...
Luca Frosini
09:59 AM Support #246: Comment editing changes comment "metadata" namely data
My proposal is as follows:
* mark the comment as "edited" and keep the time of the first comment;
* change the but...
Leonardo Candela

Jun 15, 2015

11:58 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
Do we have a hint about the couchdb architecture that is to be implemented?
Andrea Dell'Amico
10:11 PM Support #246: Comment editing changes comment "metadata" namely data
I did not completely understand the answer. If the time time is changed and this breaks the discussion thread then we... Pasquale Pagano
10:06 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
why this activity has been paused? Are you waiting for feedback? Pasquale Pagano
09:32 PM Task #88: Migrate gCube and D4Science WIKI content on new installation
It is not possible to accumulate so much delay on an activity. If the task is not intended to be supported please rea... Pasquale Pagano
06:31 PM Incident #258 (Closed): TabMan - the files associated to the resources are downloaded without extension
After producing an image via StatMan, the resources attached to the table have correct names but they are downloaded ... Gianpaolo Coro
06:21 PM Incident #257 (Closed): TabMan - GIS Legend
When producing a GIS map with TabMan in the production environment, if the column to attach to the map contains numbe... Gianpaolo Coro
02:52 PM Task #176 (In Progress): Configure DSS to support EUDAT-D4Science integration

New document from Cineca: http://eudat.eu/User%20Documentation%20-%20B2STAGE.html
Andrea Dell'Amico
12:36 PM Task #248 (Closed): No mongodb server rotates its logs
Roberto Cirillo
12:36 PM Task #248 (In Progress): No mongodb server rotates its logs
I've enabled the log rotation on all the instances in this way:
From the mongo shell, issue the logRotate command ...
Roberto Cirillo

Jun 12, 2015

06:22 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
The two mediawiki instances will run on the same server or there will be two separate VMs?
Andrea Dell'Amico
06:19 PM Task #87 (In Progress): Make new gCube and D4Science wiki available only on https
The SSL configuration is ready to be deployed.
Before switching to ssl it should be better to test if the site works...
Andrea Dell'Amico
02:29 PM Task #249 (Closed): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure
Massimiliano Assante
02:28 PM Task #249 (Resolved): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure
Massimiliano Assante
11:03 AM Task #249 (In Progress): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure
Massimiliano Assante
02:27 PM Task #172: Shut down the old d4science Trac instance
Any news?
Andrea Dell'Amico
02:26 PM Task #98 (Closed): MongoDB in production: allow only trusted connections
Andrea Dell'Amico
02:07 PM Task #99: run mongoDB as unprivileged user
This activity has already been done by Tommaso in development environment. I guess Tommaso know the sequence of steps... Roberto Cirillo
01:24 PM Task #99: run mongoDB as unprivileged user
I assume the nodes are:
~~~
node58.p.d4science.research-infrastructures.eu
node67.p.d4science.research-infrastru...
Andrea Dell'Amico
11:03 AM Support #246: Comment editing changes comment "metadata" namely data
the time is modified you are right, but that was thought to not make people change their previous pretend to have sai... Massimiliano Assante
10:22 AM Incident #171 (Paused): Recently updated file for gCubeApps/BlueBridgeProject Folder error
Roberto Cirillo

Jun 11, 2015

07:28 PM Task #176: Configure DSS to support EUDAT-D4Science integration
We had a conference call with Giovanni Morelli, he asked to wait for more precise guidelines. He will send them in th... Andrea Dell'Amico
05:55 PM Task #249: Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure
The portlet for the banner working on Liferay 6.0 is already implemented and deployed on social.isti.cnr.it, I am goi... Massimiliano Assante
05:51 PM Task #249 (Closed): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure
In particular the Cookies Policy should be added to:
* services.d4science.org
* i-marine.d4science.org
* egip.d4...
Massimiliano Assante
05:37 PM Task #248 (Closed): No mongodb server rotates its logs
All the mongodb instances never rotate their log files. The production cluster log files are over 1GB on every node.
Andrea Dell'Amico
04:29 PM Task #98 (Feedback): MongoDB in production: allow only trusted connections
The iptables rules are now active.
Andrea Dell'Amico
03:43 PM Task #98: MongoDB in production: allow only trusted connections
Yes Andrea. Please, include all these network. Roberto Cirillo
03:35 PM Task #98 (In Progress): MongoDB in production: allow only trusted connections
I did not found any connections from .tw hosts, but I composed a list that includes more that what initially asked:
...
Andrea Dell'Amico
03:51 PM Support #246 (Closed): Comment editing changes comment "metadata" namely data
The semantic of the edit is quite questionable since I'm allowed to modify my comment yet:
* the comment time is mod...
Leonardo Candela
03:11 PM Incident #245: When an invite is performed more than once the button invite disappears and only Close is available
Ready To Release Massimiliano Assante
03:11 PM Incident #245 (Closed): When an invite is performed more than once the button invite disappears and only Close is available
Massimiliano Assante
03:10 PM Incident #245 (Closed): When an invite is performed more than once the button invite disappears and only Close is available
Massimiliano Assante

Jun 10, 2015

05:07 PM Task #98: MongoDB in production: allow only trusted connections
I've found some networks recently used to protect another service on node21.p.d4science.research-infrastructures.eu:
...
Andrea Dell'Amico
04:35 PM Support #238 (Rejected): The nagios check 'gcube search' goes often in critical state
Andrea Dell'Amico
04:35 PM Support #238: The nagios check 'gcube search' goes often in critical state
then the ticket can be closed for me. Massimiliano Assante
04:07 PM Support #238: The nagios check 'gcube search' goes often in critical state
It's working correctly since the start of the month, but it flipped a lot in May.
When if fails it's always becaus...
Andrea Dell'Amico
02:04 PM Support #238: The nagios check 'gcube search' goes often in critical state
okay, clear now.
Is the second (search) failing now? It should not because if I click on http://portal.i-marine.d4sc...
Massimiliano Assante
01:00 PM Support #238: The nagios check 'gcube search' goes often in critical state
I attach the two scripts to clarify.
Andrea Dell'Amico
12:55 PM Support #238: The nagios check 'gcube search' goes often in critical state
Sorry, I just noted that the formatting lost a part of the script. The line
~~~
wget http://$1/images/report/xml ...
Andrea Dell'Amico
12:47 PM Support #238: The nagios check 'gcube search' goes often in critical state
If my Analysis is right you may need to correct the Nagios check Massimiliano Assante
12:44 PM Support #238: The nagios check 'gcube search' goes often in critical state
I think this check is messy, it seems mixing the check on the Images Servlet serving the iOS and Android app AppliFis... Massimiliano Assante
12:21 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
In this ticket we report a process for catch statistics having the following aims:
1. producing the trends of the ...
Gianpaolo Coro
11:26 AM Task #117 (Closed): Execute FAO MSY on the complete FAO Dataset
The results have been sent to Yimin Ye of FAO. Gianpaolo Coro

Jun 09, 2015

05:11 PM Task #100: Increase ram Memory on IS-Collector services in production
It needs to be done during the next downtime.
Andrea Dell'Amico
05:09 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
It seems that we only need to ask for the wiki backups.
Tommaso is going to email the Greeks.
After that we will ...
Andrea Dell'Amico
01:16 PM Incident #232 (Closed): node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
The iptables rules are active. Andrea Dell'Amico
12:42 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
No it is a feature of ehcache that is not being exploited. Searchsystem's ehcache does not talk with other service in... John Gerbesiotis
12:37 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
John Gerbesiotis wrote:
> Yes searchsystem uses ehcache and the default port of ehcache is 4446.
And that port is...
Andrea Dell'Amico
12:26 PM Incident #232 (In Progress): node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
Andrea, do you want to add an iptables rule for this port? Roberto Cirillo
12:24 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
I think we can close the ticket now Roberto Cirillo
12:21 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
Yes searchsystem uses ehcache and the default port of ehcache is 4446. John Gerbesiotis

Jun 08, 2015

06:31 PM Support #238 (Rejected): The nagios check 'gcube search' goes often in critical state
The "Gcube search" nagios check on portal.i-marine.d4science.org is often in critical state. The script source code i... Andrea Dell'Amico
06:19 PM Task #213 (Closed): Create a new machine to host the mongodb server used by the accounting service
The nagios checks are active.
Andrea Dell'Amico
06:16 PM Support #233 (Closed): node65.p.d4science.research-infrastructures.eu increase memory RAM
Roberto Cirillo
06:15 PM Support #233: node65.p.d4science.research-infrastructures.eu increase memory RAM
The VM and the IS-Registry service have been restarted succesfully Roberto Cirillo
12:31 PM Support #233: node65.p.d4science.research-infrastructures.eu increase memory RAM
I've also increased the heap size. We could restart the VM today at 18:10 CEST Roberto Cirillo
12:05 PM Support #233 (In Progress): node65.p.d4science.research-infrastructures.eu increase memory RAM
I've just increased the available RAM in the xen configuration file for the machine. A shutdown is needed, let me kn... Andrea Dell'Amico
10:23 AM Support #233 (Closed): node65.p.d4science.research-infrastructures.eu increase memory RAM
The IS-Registry service hosted on node65.p.d4science.research-infrastructures.eu has memory problems. it need to incr... Roberto Cirillo
06:02 PM Support #229 (Closed): Create a new virtual machine to host the ic-proxy webapp managed by smartgears
Andrea Dell'Amico
04:44 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
I've notice on node51.p there are the ehcache jars. I don't know how the ehcache is configured but I've seen that a k... Roberto Cirillo
04:26 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
I suggest limiting 4446 to subnet only. John Gerbesiotis
04:23 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
Port 8009 is now closed. What's worrying me is udp 4446, it's opened by one of the tomcat webapps but I don't know if... Andrea Dell'Amico
04:15 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
Well, search services should be publicly available for REST APIs also, as such, 8080 should be public at least. We co... John Gerbesiotis
04:03 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
as John said, for this VM I think is better to limit access to our subnet. The services hosted on node51.p have to ... Roberto Cirillo
12:49 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
Searchsystem service communicates with elasticsearch, which is on another vm and with pottal.
To my knowledge, ela...
John Gerbesiotis
11:52 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
I don't know this. The d4science services hosted on this VM are related to an elastic search cluster and, maybe, this... Roberto Cirillo
11:38 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
It surely needs to be closed.
The ajp port is always of no use on our systems, because we always use the http port...
Andrea Dell'Amico
11:34 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
If there isn't an apache frontend on this host, I think is better to disable the 8009 port in the server.xml file. I... Roberto Cirillo
11:04 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
On node51.p (pre production host) there are the following services:
- executionengineservice-search
- searchsystems...
Roberto Cirillo

Jun 06, 2015

12:44 PM Incident #232 (Closed): node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China
The 8080 (and 8005) tomcat port has been closed since last night.
The actual 'netstat -na' output is:
~~~
Active...
Andrea Dell'Amico

Jun 05, 2015

05:27 PM Support #229: Create a new virtual machine to host the ic-proxy webapp managed by smartgears
The icproxy webapp has been deployed on node79.d4science.org. It seems to be configured properly. Currently is under ... Roberto Cirillo
04:51 PM Support #229 (Feedback): Create a new virtual machine to host the ic-proxy webapp managed by smartgears
Andrea Dell'Amico
04:51 PM Support #229 (In Progress): Create a new virtual machine to host the ic-proxy webapp managed by smartgears
The machine is ready.
There's a nginx frontend that runs on port 80 and act as a proxy for the tomcat instance.
Andrea Dell'Amico
03:28 PM Support #229: Create a new virtual machine to host the ic-proxy webapp managed by smartgears
The hostname will be node79.d4science.org, IP 146.48.122.79
Andrea Dell'Amico
02:27 PM Support #229: Create a new virtual machine to host the ic-proxy webapp managed by smartgears
Roberto Cirillo wrote:
> Java7
> tomcat
> smartgears distribution 1.2.2
> 2 vcpu
> 2 GB ram
>
> the new ...
Roberto Cirillo
02:27 PM Support #229 (Closed): Create a new virtual machine to host the ic-proxy webapp managed by smartgears
1. Java7
2. tomcat
3. smartgears distribution 1.2.2
4 2 vcpu
5 2 GB ram
the new machine should be available fo...
Roberto Cirillo

Jun 04, 2015

05:31 PM Task #183: tomcat running as root user under port 80
Roberto Cirillo wrote:
> The following list contains all tomcat instances in production, running as root user under ...
Andrea Dell'Amico
05:21 PM Task #183: tomcat running as root user under port 80
due to changes in a related task Andrea Dell'Amico
05:27 PM Incident #212 (Closed): MongoDB for usageTracker should be upgraded.
Roberto Cirillo
05:19 PM Incident #212 (In Progress): MongoDB for usageTracker should be upgraded.
Roberto Cirillo
01:03 PM Incident #212 (Feedback): MongoDB for usageTracker should be upgraded.
Roberto Cirillo
01:03 PM Incident #212 (In Progress): MongoDB for usageTracker should be upgraded.
Roberto Cirillo
01:02 PM Incident #212: MongoDB for usageTracker should be upgraded.
I've changed the UsageTracker configuration for mongoDB. Now the UsageTracker service is connected to the new machine... Roberto Cirillo
11:23 AM Incident #212: MongoDB for usageTracker should be upgraded.
The problem seems to be: 32 bit linux DISTRIBUTION with 64 Bit KERNEL.
I'm not able to donwload a 64bit package by a...
Roberto Cirillo
10:15 AM Incident #212 (Closed): MongoDB for usageTracker should be upgraded.
On node57.p (UsageTracker) run 32-bit mongoDB. This version is limited to only 2GB of datasize.
At this time it see...
Roberto Cirillo
05:25 PM Task #217 (Closed): Automate the installation and configuration of the statistical-manager nodes
All the components need to be automatically deployed.
Andrea Dell'Amico
05:23 PM Task #206: Automate the installation of wps.statistical.d4science.org
The news is that R is not needed.
R is actually present maybe because the machine is a clone of one of the smartgear...
Andrea Dell'Amico
05:21 PM Task #206: Automate the installation of wps.statistical.d4science.org
due to changes in a related task Andrea Dell'Amico
05:21 PM Task #207: Document the R installation on the statistical-manager nodes.

The packages list describes the installation on the statistical-manager* nodes.
Andrea Dell'Amico
05:13 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
All the files were restored from a mongoDB backup of 31 Jan 2015 except one:
BlueBRIDGE_Part_B_Sec1-3 20150113.docx...
Roberto Cirillo
03:12 PM Task #172: Shut down the old d4science Trac instance
I see a lot of other virtualdomains on issue.research-infrastructures.eu. Some are trac instances, some are 'portals'... Andrea Dell'Amico
01:04 PM Task #213 (In Progress): Create a new machine to host the mongodb server used by the accounting service
We need the nagios checks.
Andrea Dell'Amico
12:57 PM Task #213 (Closed): Create a new machine to host the mongodb server used by the accounting service
There is a new playbook inside d4science-ghn-cluster that installs a configure a mongodb instance.
It can be extende...
Andrea Dell'Amico
12:56 PM Task #213 (In Progress): Create a new machine to host the mongodb server used by the accounting service
The machine is up and running.
Andrea Dell'Amico
11:52 AM Task #213: Create a new machine to host the mongodb server used by the accounting service
node57.p.d4science.research-infrastructures.eu's IP address: 146.48.122.135 (needed to manage the firewall rules).
Andrea Dell'Amico
11:51 AM Task #213: Create a new machine to host the mongodb server used by the accounting service
Hostname: mongo-0-ut-d4s.d4science.org
IP address: 146.48.123.0
Andrea Dell'Amico
11:49 AM Task #213 (Closed): Create a new machine to host the mongodb server used by the accounting service

1. Install mongodb 2.x
2. Mount the /data dir now used by node57.p
3. monitor mongodb via nagios
4. mongodb ac...
Andrea Dell'Amico

Jun 03, 2015

05:53 PM Task #207: Document the R installation on the statistical-manager nodes.
I have tried to gather the offline and the online packages required for both the Statistical Manager and the WPS serv... Gianpaolo Coro
11:17 AM Task #207 (In Progress): Document the R installation on the statistical-manager nodes.
Gianpaolo Coro
03:25 PM Task #208 (Closed): Prepare and process Indian Ocean Tuna Commission catch statistics
In order to support and promote processing of stock assessment data in BlueBridge, we were requested to analyse tuna ... Gianpaolo Coro
11:56 AM Task #98: MongoDB in production: allow only trusted connections
Roberto Cirillo wrote:
> 1. 28017 port should be closed from outside
Ok
> 2. I don't know if is possible to o...
Andrea Dell'Amico
11:08 AM Task #98: MongoDB in production: allow only trusted connections
1. 28017 port should be closed from outside
2. I don't know if is possible to obtain the networks from a domain nam...
Roberto Cirillo
11:16 AM Support #135 (Closed): Add a Favicon to Redmine Service
Andrea Dell'Amico
11:12 AM Support #135 (Resolved): Add a Favicon to Redmine Service
Favicon is in place. Leonardo Candela

May 30, 2015

08:34 PM Task #207 (Closed): Document the R installation on the statistical-manager nodes.
The R installation of wps.statistical.d4science.org is more complex than the one that runs on the workers nodes.
W...
Andrea Dell'Amico
08:31 PM Task #206 (Closed): Automate the installation of wps.statistical.d4science.org
1. Web server frontend
2. Tomcat under an unprivileged user
3. R needs to be installed with the same version packag...
Andrea Dell'Amico
08:29 PM Task #205 (Closed): Automate the installation and configuration of the geonetwork servers

Put them under ansible control, and install a web server frontend as we did for the geoservers.
Andrea Dell'Amico
08:27 PM Task #183: tomcat running as root user under port 80
The tomcat on node57.p.d4science.research-infrastructures.eu is running as 'transact' user and it's listening on port... Andrea Dell'Amico
05:42 PM Support #135 (Feedback): Add a Favicon to Redmine Service
Andrea Dell'Amico
05:42 PM Support #135 (In Progress): Add a Favicon to Redmine Service
Done. Andrea Dell'Amico

May 29, 2015

07:42 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
A mediawiki installation lives on wiki.d4science.org. I shut down the web server because I still don't know how the w... Andrea Dell'Amico
03:15 PM Task #117: Execute FAO MSY on the complete FAO Dataset
As it happened also in other cases (e.g. the Length-Weight algorithm), the effect of parallelising an R script is to ... Gianpaolo Coro
12:35 PM Task #140 (Closed): 36 new smartgears VMs are needed
Roberto Cirillo
12:25 PM Task #140 (Resolved): 36 new smartgears VMs are needed
Roberto Cirillo
12:28 PM Incident #163 (Rejected): Redmine - change the duration of the working day
Redmine perfectly calculate the time. The issue does not exist Luca Frosini
12:27 PM Incident #163 (In Progress): Redmine - change the duration of the working day
Luca Frosini
11:36 AM Task #184 (Closed): Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions
In this list there is a set of VMs with an OS (ubuntu 8.04 or 121.04) that are not supported by Ganglia and should be... Roberto Cirillo
11:24 AM Task #183 (Closed): tomcat running as root user under port 80
The following list contains all tomcat instances in production, running as root user under port 80:
node57.p.d4sci...
Roberto Cirillo

May 28, 2015

05:32 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
I've attached the history of "Proposal" folder: I see at the same time a "cut" and an "add" operation of the "Old" f... Roberto Cirillo
05:02 PM Task #177 (Closed): Make Release Notes of Cube 3.7.0 Public Available
Massimiliano Assante
05:02 PM Task #177 (Closed): Make Release Notes of Cube 3.7.0 Public Available
The release notes coming from ETICS have been formed by Nikolas, I took care of formatting them in HTML and put in th... Massimiliano Assante
04:27 PM Incident #148 (Closed): Resource Sweeper does not sweep GHN Resources
Massimiliano Assante
04:26 PM Incident #148: Resource Sweeper does not sweep GHN Resources
is this activity terminated? if yes, please close the ticket. Pasquale Pagano
04:18 PM Task #176 (Closed): Configure DSS to support EUDAT-D4Science integration
According to what reported here: http://eudat.eu/User%20Documentation%20-%20Data%20Staging%20Script.html#UserDocument... Pasquale Pagano
03:21 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
@roberto.cirillo do you have information regarding what Andrea is asking? Luca Frosini
03:14 PM Task #85 (In Progress): Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org
I'm going to install mediawiki with nginx as a front end web server loosely following those guides: [https://www.medi... Andrea Dell'Amico
03:13 PM Task #84 (In Progress): Create new virtual machines to host gCube and DScience WIKI
Andrea Dell'Amico
01:21 PM Task #172: Shut down the old d4science Trac instance
I just deleted the following DNS records:
issue.d4science-ii.research-infrastructures.eu
support.d4science.resear...
Andrea Dell'Amico
01:02 PM Task #172: Shut down the old d4science Trac instance
The shutdown email should be communicated on the iMarine project TCom mailing list. Massimiliano Assante
01:01 PM Task #172: Shut down the old d4science Trac instance
Before shutting down the iMarine TRAC instance please give us a deadline (and 1 week of time) with repeated warning e... Massimiliano Assante
01:01 PM Task #172: Shut down the old d4science Trac instance
The SVN sync is now disabled.
Andrea Dell'Amico
12:44 PM Task #172: Shut down the old d4science Trac instance
I asked to involved people and I confirm that the SVN sync is not needed anymore. Luca Frosini
12:22 PM Task #172 (In Progress): Shut down the old d4science Trac instance
The server is now running only the redbox and social-isti trac instances.
Is the svn sync still needed?
Andrea Dell'Amico

May 27, 2015

11:22 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
All the files in the folder "Old" are not available, they are 35 files.
Today the folder "Old" and other folders hav...
Valentina Marioli
09:33 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
This is not exact: the metadata fields are stored in MongoDB but the file payload is missing.
Could I have more deta...
Roberto Cirillo
06:58 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error
The file is in the storage, but it's not possible to download it.
Roberto, could you please check it?
Valentina Marioli
06:52 PM Incident #171 (In Progress): Recently updated file for gCubeApps/BlueBridgeProject Folder error
Valentina Marioli
05:40 PM Incident #171 (Closed): Recently updated file for gCubeApps/BlueBridgeProject Folder error
The portlet receives the following exception in the backend, I checked the scope for the storage service endpoint and... Massimiliano Assante
11:17 PM Task #172: Shut down the old d4science Trac instance
RedBox has to be maintained as well.
Pasquale Pagano
11:02 PM Task #172: Shut down the old d4science Trac instance
The d-net guys say that redbox isn't their.
All the other instances can be closed. So it seems that only social.isti...
Andrea Dell'Amico
07:56 PM Task #172: Shut down the old d4science Trac instance
I think the following ones can be turned off.
issue.d4science-ii.research-infrastructures.eu
support.d4science.re...
Pasquale Pagano
06:51 PM Task #172: Shut down the old d4science Trac instance
There are several trac instances on that server:
issue.d4science-ii.research-infrastructures.eu
support.d4science...
Andrea Dell'Amico
06:27 PM Task #172 (Closed): Shut down the old d4science Trac instance
The old trac instance available at https://support.d4science.research-infrastructures.eu can be shut down.
If the ho...
Luca Frosini
06:24 PM Task #98: MongoDB in production: allow only trusted connections
Two considerations
1. 28017 is the http port that shows the server status. Is it really needed? even from outside?
...
Andrea Dell'Amico
05:53 PM Incident #163 (Paused): Redmine - change the duration of the working day
I didn't find the solution yet. More investigation is needed Luca Frosini
12:49 PM Incident #163 (In Progress): Redmine - change the duration of the working day
Luca Frosini
11:49 AM Incident #163 (Closed): Redmine - change the duration of the working day
Redmine supports a working day with a duration of 24 hours.
You can change the configuration of Redmine to support ...
Giancarlo Panichi
04:08 PM Task #169 (Closed): Verification of the smartgears nodes list
Ganglia is showing more smartgears workers than expected: [[http://monitoring.research-infrastructures.eu/ganglia/?c=... Andrea Dell'Amico
02:18 PM Task #117 (In Progress): Execute FAO MSY on the complete FAO Dataset
Tests have started for this huge computation.
I expect the computation time to be exponential descendant.
A linear...
Gianpaolo Coro

May 26, 2015

11:59 PM Task #140: 36 new smartgears VMs are needed
The keys have been installed on all nodes.
Andrea Dell'Amico
06:00 PM Task #140: 36 new smartgears VMs are needed
It's also need to add the production key "d4science.research-infrastructures.eu.gcubekey" on all the new nodes config... Roberto Cirillo
06:01 PM Incident #148: Resource Sweeper does not sweep GHN Resources
The fix has been released in 3.7.0 and should build tonight. Massimiliano Assante
11:17 AM Incident #148: Resource Sweeper does not sweep GHN Resources
Please deploy the patch on the production portal. Pasquale Pagano

May 25, 2015

07:54 PM Task #150 (Closed): Add nagios check for sp.d4science.org tomcat
This machine hosts the Shibboleth service provider of the infrastructure.
The tomcat is the same and is installed ...
Massimiliano Assante
07:48 PM Task #149 (Closed): Add nagios check for www.d4science.org and www.gcube-system.org websites
The tomcat is the same and is installed in /home/portal/liferay/tomcat/ of portal.d4science.org Massimiliano Assante
07:43 PM Incident #148 (Resolved): Resource Sweeper does not sweep GHN Resources
The new deserialisation is performed through the Resources class of org.gcube.common.resources instead of using JAXB,... Massimiliano Assante
05:14 PM Incident #148 (In Progress): Resource Sweeper does not sweep GHN Resources
Massimiliano Assante
05:14 PM Incident #148 (Closed): Resource Sweeper does not sweep GHN Resources
The Resource Sweeper is no longer able to sweep expired GHN resources. The problem seems to be in the resource deseri... Massimiliano Assante
06:17 PM Task #140 (Feedback): 36 new smartgears VMs are needed
All the nodes from node43.d4science.org to node78.d4science.org are now configured with the *production* scope.
Th...
Andrea Dell'Amico
03:11 PM Task #140: 36 new smartgears VMs are needed
I have run precise tests to evaluate the work of this execution environment, both from the Statistical Manager and fr... Gianpaolo Coro
03:05 PM Task #140: 36 new smartgears VMs are needed
The configuration scripts are complete. The R installation has been tested, so I'm launching the configuration of all... Andrea Dell'Amico
02:46 PM Task #140: 36 new smartgears VMs are needed
Please update the %Done and let us understand the status of this activity. Pasquale Pagano
05:52 PM Task #109 (Closed): new VMs for new worker instances in production environment
Dismissed. Tommaso Piccioli
05:07 PM Task #109: new VMs for new worker instances in production environment
I'm going to dismiss the 3 nodes
node25.d4science.org
node26.d4science.org
node40.d4science.org
no other res...
Tommaso Piccioli
02:45 PM Task #109 (In Progress): new VMs for new worker instances in production environment
Why this ticket is still open (it was still marked as New instead of In Progress) and why its %Done is still 0%? Plea... Pasquale Pagano
03:03 PM Task #138 (Closed): Automate the installation of the R suite and its packages
Gp says that the installation is correctly working.
Andrea Dell'Amico
02:47 PM Task #138: Automate the installation of the R suite and its packages
Gp please answer to the request for feedback. Pasquale Pagano
02:58 PM Task #131 (Closed): Report the R Interpreter environment to reproduce on the Generic Worker nodes
Gianpaolo Coro
 

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