Task #138
closed
Task #131: Report the R Interpreter environment to reproduce on the Generic Worker nodes
Automate the installation of the R suite and its packages
100%
Description
Create an ansible playbook that installs R and the listed packages on Ubuntu precise
Related issues
Updated by Andrea Dell'Amico about 10 years ago
The result is the following:
Package Version
abind "abind" "1.4-3"
bayesmix "bayesmix" "0.7-3"
coda "coda" "0.17-1"
R2jags "R2jags" "0.5-6"
R2WinBUGS "R2WinBUGS" "2.1-19"
rjags "rjags" "3-15"
runjags "runjags" "2.0.1-4"
abind "abind" "1.4-0"
coda "coda" "0.14-5"
maptools "maptools" "0.7-38"
rjags "rjags" "3-3"
sp "sp" "0.9-81"
base "base" "2.14.1"
boot "boot" "1.3-3"
class "class" "7.3-3"
cluster "cluster" "1.14.1"
codetools "codetools" "0.2-8"
compiler "compiler" "2.14.1"
datasets "datasets" "2.14.1"
foreign "foreign" "0.8-48"
graphics "graphics" "2.14.1"
grDevices "grDevices" "2.14.1"
grid "grid" "2.14.1"
KernSmooth "KernSmooth" "2.23-7"
lattice "lattice" "0.20-0"
MASS "MASS" "7.3-16"
Matrix "Matrix" "1.0-2"
methods "methods" "2.14.1"
mgcv "mgcv" "1.7-12"
nlme "nlme" "3.1-102"
nnet "nnet" "7.3-1"
parallel "parallel" "2.14.1"
rpart "rpart" "3.1-50"
spatial "spatial" "7.3-3"
splines "splines" "2.14.1"
stats "stats" "2.14.1"
stats4 "stats4" "2.14.1"
survival "survival" "2.36-10"
tcltk "tcltk" "2.14.1"
tools "tools" "2.14.1"
utils "utils" "2.14.1"
Updated by Andrea Dell'Amico about 10 years ago
- Status changed from New to In Progress
- % Done changed from 0 to 90
There's now a library playbook called 'R' that installs the base R packages and even additional packages.
The additional packages can be installed in two ways:
- From the linux distribution repository
- From the CRAN repository as binary files.
The default packages are the ones listed by Gianpaolo.
The ones installed as debian packages are:
r-cran-rjags,r-cran-abind,r-cran-boot,r-cran-class,r-cran-cluster,r-cran-coda,r-cran-codetools,r-cran-foreign,r-cran-lattice,r-cran-maptools,r-cran-mass,r-cran-matrix,r-cran-mgcv,r-cran-nlme,r-cran-nnet,r-cran-rpart,r-cran-sp,r-cran-spatial,r-cran-survival
The ones installed directly from CRAN are: R2WinBUGS, R2jags, bayesmix, runjags
All the other packages in the Gianpaolo's list are part of the base R distribution.
Updated by Andrea Dell'Amico about 10 years ago
- Related to Task #140: 36 new smartgears VMs are needed added
Updated by Andrea Dell'Amico about 10 years ago
- Status changed from In Progress to Feedback
Updated by Pasquale Pagano about 10 years ago
Gp please answer to the request for feedback.
Updated by Andrea Dell'Amico about 10 years ago
- Status changed from Feedback to Closed
- % Done changed from 90 to 100
Gp says that the installation is correctly working.
