D4Science Infrastructure

May 22, 2015

11:28 PM Task #131 (In Progress): Report the R Interpreter environment to reproduce on the Generic Worker nodes

Andrea Dell'Amico

11:24 PM Task #131 (Feedback): Report the R Interpreter environment to reproduce on the Generic Worker nodes

Andrea Dell'Amico

11:22 PM Task #131: Report the R Interpreter environment to reproduce on the Generic Worker nodes

I've automated the packages installation but some versions differ from your list:
~~~
Package Ver... Andrea Dell'Amico

07:23 PM Task #131: Report the R Interpreter environment to reproduce on the Generic Worker nodes

Which jags version is needed? The one distributed with Ubuntu precise is 3.1.0, via CRAN the 3.2.0, 3.3.0, 3.4.0 are ... Andrea Dell'Amico

11:27 PM Task #138: Automate the installation of the R suite and its packages

The result is the following:
Package Version
abind "abind" "1.4-3"
bayesmix "bayesmix" "0.7-3"
coda "coda" "0.1... Andrea Dell'Amico

11:26 PM Task #138 (Closed): Automate the installation of the R suite and its packages

Create an ansible playbook that installs R and the listed packages on Ubuntu precise Andrea Dell'Amico

May 21, 2015

06:43 PM Support #135 (Closed): Add a Favicon to Redmine Service

The favicon of the Redmine service should be revised by using the following one
https://www.d4science.org/documents... Leonardo Candela

11:18 AM Task #131: Report the R Interpreter environment to reproduce on the Generic Worker nodes

It seems that CRAN is also availabe as a Ubuntu repository: http://sites.psu.edu/theubunturblog/installing-r-in-ubunt... Andrea Dell'Amico

11:10 AM Task #131 (In Progress): Report the R Interpreter environment to reproduce on the Generic Worker nodes

The Worker nodes host a different R Environment with respect to the Statistical Managers. The latters are far more co... Gianpaolo Coro

11:03 AM Task #131 (Closed): Report the R Interpreter environment to reproduce on the Generic Worker nodes

In this ticket we will report the environment to install on a Generic Worker node to make it compliant with current a... Gianpaolo Coro

May 18, 2015

05:59 PM Support #119 (Closed): add new nagios check on bionym.d4science.org

A new Nagios check should be added for tomcat running on port 80 hosted at: bionym.d4science.org Roberto Cirillo

04:11 PM Task #117 (Closed): Execute FAO MSY on the complete FAO Dataset

FAO MSY needs to be executed on 5500 species. This requires empowering the production Cloud processing environment. Gianpaolo Coro

May 15, 2015

06:40 PM Task #110 (Closed): Create 3 Virtual Machine for developement to host new noSQL Db cluster

Please create the new machine as nodeXX.d.d4science.org Luca Frosini

05:22 PM Task #109 (Closed): new VMs for new worker instances in production environment

The following list contains all the VMs dismissed in release 3.7
{{{
node2.d4science.org
node6.p.d4science.researc... Roberto Cirillo

05:11 PM Incident #103 (Closed): statistical manager and new workers issue

Gianpaolo Coro

05:10 PM Incident #103 (In Progress): statistical manager and new workers issue

Gianpaolo Coro

05:03 PM Incident #103: statistical manager and new workers issue

The modifications have been deployed and tested with heterogeneous experiments on the Statistical Managers in product... Gianpaolo Coro

02:32 PM Incident #103: statistical manager and new workers issue

Two nested problems caused this issue:
1 - the storage manager destroyed one previously created smp link for a file ... Gianpaolo Coro

02:21 PM Incident #103: statistical manager and new workers issue

please put in progress this incidente and report the solution identified. Pasquale Pagano

03:50 PM Incident #95 (Closed): References on task in SVN commit corrupt referenced ticket

Tommaso Piccioli

02:23 PM Incident #95: References on task in SVN commit corrupt referenced ticket

is the issue solved? If yes, please close the incident. Pasquale Pagano

02:21 PM Incident #107 (Closed): gCubeApps/ENVRI VRE GenericResource missing

Massimiliano Assante

12:33 PM Incident #107 (Resolved): gCubeApps/ENVRI VRE GenericResource missing

Massimiliano Assante

12:32 PM Incident #107 (In Progress): gCubeApps/ENVRI VRE GenericResource missing

The generic resources of type VRE was recreated by issuing a new VRE Creation Massimiliano Assante

12:21 PM Incident #107 (Closed): gCubeApps/ENVRI VRE GenericResource missing

The gCubeApps/ENVRI is missing in the generic resources go type VRE, therefore we cannot perform any operation in the... Massimiliano Assante

May 14, 2015

07:35 PM Incident #103 (Closed): statistical manager and new workers issue

The new worker seems able to start more than one computation and this cause errors in accessing the statistical manag... Roberto Cirillo

06:45 PM Incident #95 (Resolved): References on task in SVN commit corrupt referenced ticket

Tommaso Piccioli

06:44 PM Incident #95 (In Progress): References on task in SVN commit corrupt referenced ticket

Plugin removed.
Anyway il seems that the pluginwas usefull for the tortoise svn users. Tommaso Piccioli

03:36 PM Incident #95: References on task in SVN commit corrupt referenced ticket

The problem is related to a plugin called **Redmine Add Subversion Links** and available here:
https://github.com/ma... Luca Frosini

11:06 AM Incident #95 (Closed): References on task in SVN commit corrupt referenced ticket

Redmine has the capability to link SVN commit to task using a keyword (refs, IssueId, fixes, ....) followed by #NN (N... Luca Frosini

05:46 PM Task #102 (Closed): AMQ in production: upgrade OS

The AMQ in production is hosted on:
message-broker.d4science.research-infrastructures.eu
with: ubuntu 9.04.
Th... Massimiliano Assante

05:44 PM Task #101 (Closed): Add new special nagios check for host: message-broker.d4science.research-infrastructures.eu

The following queues:
- D4ScienceJobAlternative
- D4ScienceJob
and every queue with prefix "D4ScienceJobRespon... Massimiliano Assante

05:39 PM Task #100 (Closed): Increase ram Memory on IS-Collector services in production

The following nodes have an instance of IS-Collector service that runs in production environment:
{{{
- node1.p.d... Massimiliano Assante

05:37 PM Task #99 (Closed): run mongoDB as unprivileged user

The mongoDB instances in production environment running as root user.
We should change the user as done in developme... Massimiliano Assante

05:34 PM Task #87: Make new gCube and D4Science wiki available only on https

I think the login should be on https but why we would want non logged user to use https? Massimiliano Assante

05:16 PM Task #98 (Closed): MongoDB in production: allow only trusted connections

Only allow trusted clients to connect to the port for the mongod instances.
The ports used are: 27017, 28017
Follo... Massimiliano Assante

May 13, 2015

03:32 PM Task #86 (Closed): Request new SSL Certificate globally recognized for wiki.gcube-system.org and wiki.d4science.org

Luca Frosini

03:26 PM Task #86 (Resolved): Request new SSL Certificate globally recognized for wiki.gcube-system.org and wiki.d4science.org

Tommaso Piccioli

03:25 PM Task #86 (In Progress): Request new SSL Certificate globally recognized for wiki.gcube-system.org and wiki.d4science.org

Tommaso Piccioli

03:22 PM Task #86: Request new SSL Certificate globally recognized for wiki.gcube-system.org and wiki.d4science.org

SSL Certificate for wiki.gcube-system.org and wiki.d4science.org already issued by CA Tommaso Piccioli

03:04 PM Task #86 (Closed): Request new SSL Certificate globally recognized for wiki.gcube-system.org and wiki.d4science.org

Luca Frosini

03:08 PM Task #84: Create new virtual machines to host gCube and DScience WIKI

The name of the machines will be
wiki.gcube-system.org
wiki.d4science.org
Luca Frosini

03:01 PM Task #84 (Closed): Create new virtual machines to host gCube and DScience WIKI

Luca Frosini

03:06 PM Task #88 (Closed): Migrate gCube and D4Science WIKI content on new installation

Luca Frosini

03:05 PM Task #87 (Closed): Make new gCube and D4Science wiki available only on https

Luca Frosini

03:02 PM Task #85 (Closed): Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Luca Frosini