Actions
Task #4610
closed
Algorithms installation in D4Science
Added by Gianpaolo Coro about 9 years ago. Updated about 8 years ago.
Status:
Closed
Priority:
Normal
Assignee:
Category:
High-Throughput-Computing
Target version:
Start date:
Jul 01, 2016
Due date:
% Done:
100%
Estimated time:
Infrastructure:
Development
Description
With the passage to Dataminer, an installation script has been developed to add an algorithm to Dataminer after a publication request has come.
Using the installation commands copied inhere, it will be possible to rebuild the complete set of algorithms integrated with Dataminer, in the case of a new installation.
Updated by Gianpaolo Coro about 9 years ago
The installation package is a zip file available here:
https://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-analysis/DataminerAlgorithmsInstaller/package/algorithmInstaller.zip
(available on SVN too)
Updated by Gianpaolo Coro about 9 years ago
- Status changed from New to In Progress
Updated by Pasquale Pagano about 9 years ago
- Tracker changed from Support to Task
Updated by Giancarlo Panichi almost 9 years ago
| Algorithm | Author | Category | Deploy | Install | Note |
| ICHTHYOP_MODEL_ONE_BY_ONE | Julien Barde | ICHTHYOP_MODEL | Prod | ./addAlgorithm.sh ICHTHYOP_MODEL_ONE_BY_ONE ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.Ichthyopmodelonebyone /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/R0FqV2lNOW1jMkxuUEIrWXY4aUhvSENHSmVMQks4NjdHbWJQNStIS0N6Yz0 "This R code packages some extraction to get observed trajectories from data sources (FADs or Drifters) and the execution of Ichthyop driven by OSCAR data to confront simulation with these observatios. netCDF outputs are transformed into maps to be visualized with Qgis. Ichthyop is a free Java tool designed to study the effects of physical and biological factors on ichthyoplankton dynamics" | none |
| WHOLE_STEPS_VPA_ICCAT_BFT_E | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh WHOLE_STEPS_VPA_ICCAT_BFT_E ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.WholeStepsVPAICCATBFTE /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/R1U3U2FMNVJVdE5MQVkvSTVMZytTRFhEczVJWmdIcXRHbWJQNStIS0N6Yz0 "Whole Steps: ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| MPA_INTERSECT_V2 | Levi Westerveld | SAI_IMPORTED | Proto | ./addAlgorithm.sh MPA_INTERSECT_V2 SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.MPAIntersectv2 /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/RXdHNTczc2pKNWhaZWYvY3g2bDZNb0c3bThtdmFsUjFHbWJQNStIS0N6Yz0 "An algorithm to compute areas of geomorphic features in an EEZ or ECOREGION area and in its intersecting Marine Protected Areas (MPAs)" | none |
| QUICK_RANK_TRAIN | Cristina Muntean | SO_BIG_DATA_ALGORITHMS | Prod | ./addAlgorithm.sh QUICK_RANK_TRAIN SO_BIG_DATA_ALGORITHMS it.cnr.isti.hpc.quickrank.qrtrain.QuickRankTrain /d4science.research-infrastructures.eu/SoBigData transducerers N http://data.d4science.org/SzVrZGlxelE4Z2RSLzcybU4zRmJoQzc3VDNtdWNJQ3NHbWJQNStIS0N6Yz0 "Quick Rank Train" | none |
| QUICK_RANK_TRAIN_NO_VALIDATION | Cristina Muntean | SO_BIG_DATA_ALGORITHMS | Prod | ./addAlgorithm.sh QUICK_RANK_TRAIN_NO_VALIDATION SO_BIG_DATA_ALGORITHMS it.cnr.isti.hpc.quickrank.qrtrainnovalid.QuickRankTrainNoValidation /d4science.research-infrastructures.eu/SoBigData transducerers N http://data.d4science.org/cURicHhvdHdHNEZSLzcybU4zRmJoRTk4cFZHMUtWV3JHbWJQNStIS0N6Yz0 "Quick Rank Train without validations" | none |
| QUICK_RANK_TEST | Cristina Muntean | SO_BIG_DATA_ALGORITHMS | Prod | ./addAlgorithm.sh QUICK_RANK_TEST SO_BIG_DATA_ALGORITHMS it.cnr.isti.hpc.quickrank.qrtest.QuickRankTest /d4science.research-infrastructures.eu/SoBigData transducerers N http://data.d4science.org/QXN5WHZvaS9mL3BSLzcybU4zRmJoSmlucFM1WDZ0dkRHbWJQNStIS0N6Yz0 "Quick Rank Test" | none |
| STAT_VAL | Daniele Regoli | SO_BIG_DATA_ALGORITHMS | Prod | ./addAlgorithm.sh STAT_VAL SO_BIG_DATA_ALGORITHMS org.gcube.dataanalysis.executor.rscripts.statval /d4science.research-infrastructures.eu/SoBigData transducerers N http://data.d4science.org/TWZtUXg2T1M1TU5SLzcybU4zRmJoQTgzNFg3aGFHdTBHbWJQNStIS0N6Yz0 "statistical validation of BIPARTITE WEIGHTED network" | none |
| CATCHES_BY_FLAGS | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_FLAGS ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbyflags /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/eDF4dWtTc000dEpSLzcybU4zRmJoTmFwUnhZeGZBN1dHbWJQNStIS0N6Yz0 "The output is a plot of the catches by flags given the filters applied by the user" | none |
| CATCHES_BY_SPECIES | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_SPECIES ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbyspecies /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/TzFqU2U1OFpIaFpSLzcybU4zRmJoTzcrWUtweFl2NHFHbWJQNStIS0N6Yz0 "The output is a plot of the catches by species given the filters applied by the user" | none |
| CATCHES_BY_TYPE_OF_SCHOOL | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_TYPE_OF_SCHOOL ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbytypeofschool /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/WGc4bTJldWFxaUZSLzcybU4zRmJoTUF1UUVLY1hoQURHbWJQNStIS0N6Yz0 "The output is a plot of the catches by type of school given the filters applied by the user" | none |
| GLOBAL_CATCHES | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh GLOBAL_CATCHES ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Globalcatches /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/eENOOVh5cXhuNlJSLzcybU4zRmJoQUVnc2NxZlJ3WW1HbWJQNStIS0N6Yz0 "The output is a plot of the catches given the filters applied by the user" | none |
| CATCHES_BY_GEAR_SIMPLIFIED_VERSION | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_GEAR_SIMPLIFIED_VERSION ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbygearsimplifiedversion /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/cGV4dnBJakxnQlJSLzcybU4zRmJoTTd3OHVoQmlobGlHbWJQNStIS0N6Yz0 "The output is a plot of the catches by gear given the filters applied by the user" | none |
| CATCHES_BY_FLAGS_SIMPLIFIED_VERSION | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_FLAGS_SIMPLIFIED_VERSION ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbyflagssimplifiedversion /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/eHBtU0c0UHBDUXBSLzcybU4zRmJoUGdqSnVHc0x5YXlHbWJQNStIS0N6Yz0 "The output is a plot of the catches by flags given the filters applied by the user" | none |
| CATCHES_BY_SPECIES_SIMPLIFIED_VERSION | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_SPECIES_SIMPLIFIED_VERSION ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbyspeciessimplifiedversion /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/YWxoYUZRYkxSRk5SLzcybU4zRmJoRWhKVWR1eloyKzZHbWJQNStIS0N6Yz0 "The output is a plot of the catches by species given the filters applied by the user" | none |
| STEP_3___VPA_ICCAT_BFT_E_PROJECTION | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh STEP_3___VPA_ICCAT_BFT_E_PROJECTION ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.STEP3VPAICCATBFTEProjection /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/aTBmTWpuZEc2bjVSLzcybU4zRmJoSWVOTWp0c0taYXVHbWJQNStIS0N6Yz0 "STEP 3: ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| CCAMLR_EXPORTER_TOOL | STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh CCAMLR_EXPORTER_TOOL STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.CCAMLRExporterTool /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/MG50Tzg1MVB3RlRDZWZucS9UQkJmU3ROZnduMXJnL3lHbWJQNStIS0N6Yz0 "Functions to generates json data and graphs based on CCMLAR input data" | none | |
| VPA_ICCAT_BFT_E_VISUALISATION | SAI_IMPORTED | Proto | ./addAlgorithm.sh VPA_ICCAT_BFT_E_VISUALISATION SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.VPAICCATBFTEVISUALISATION /gcube/devsec transducerers N http://data.d4science.org/Z1B5aU03RzZvSjlrMXBkVER6VzVEZGVZenBvb2VlbnJHbWJQNStIS0N6Yz0 "a test algorithm for the alg publisher" | deprecated | |
| STEP_1___VPA_ICCAT_BFT_E_RETROS | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh STEP_1___VPA_ICCAT_BFT_E_RETROS ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.STEP1VPAICCATBFTERetros /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/Ymk0OEhEdG00M0hDZWZucS9UQkJmVFNvU3dTODlZYWdHbWJQNStIS0N6Yz0 "STEP 1 ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| SHARK_ABUNDANCE_DATA_PROCESSOR | SAI_IMPORTED | Proto | ./addAlgorithm.sh SHARK_ABUNDANCE_DATA_PROCESSOR SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.sharkabundancedataprocessor /gcube/devsec transducerers N http://data.d4science.org/bmd1aTZEbm9IMXMyZzdsdHhnRW10TmJnYk1tTGxOTXRHbWJQNStIS0N6Yz0 "an algorithm to calculate plankton abundances from the SHARK database" | deprecated | |
| STATISTICAL_VALIDATION | SAI_IMPORTED | Proto | ./addAlgorithm.sh STATISTICAL_VALIDATION SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.statisticalvalidation /gcube/devsec transducerers N http://data.d4science.org/MTNUS2RNbmhsdWxrMXBkVER6VzVEWldtZTZJbm1mUEtHbWJQNStIS0N6Yz0 "statistical validation of unipartite (non-negative integer) weighted directed networks" | deprecated | |
| STEP_2__VPA_ICCAT_BFT_E_VISUALISATION | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh STEP_2__VPA_ICCAT_BFT_E_VISUALISATION ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.STEP2VPAICCATBFTEVISUALISATION /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/aUdjVlB4VFFuNERDZWZucS9UQkJmWS9ZWFpDb0taN21HbWJQNStIS0N6Yz0 "ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| MATLAS_TRAJECTORY_BUILDER | Roberto Trasarti | SO_BIG_DATA_ALGORITHMS | Prod | ./addAlgorithm.sh TRAJECTORY_BUILDER SO_BIG_DATA_ALGORITHMS it.cnr.isti.kdd.matlas.trajectoryBuilder.TrajectoryBuilder /d4science.research-infrastructures.eu/SoBigData transducerers N http://data.d4science.org/ZlpFZVNwLzJtR0N6R2hYM1ZXaElmcmtxemczUEMwUGFHbWJQNStIS0N6Yz0 "Trajectory Builder" | none |
| MATLAS_OPTICS_CLUSTERING | Roberto Trasarti | SO_BIG_DATA_ALGORITHMS | Prod | ./addAlgorithm.sh MATLAS_OPTICS_CLUSTERING SAI_IMPORTED it.cnr.isti.kdd.matlas.optics.Optics /d4science.research-infrastructures.eu/SoBigData transducerers N http://data.d4science.org/d3pqU2hTYnJRSjlraUZuNG1IUGdvNHRYOWVaNERlcUZHbWJQNStIS0N6Yz0 "An Implementation of the density-based algorithm Ordering Points to Identify the Clustering Structure (OPTICS). The approach of this algorithm is suitable for complex data such as patio-temporal Trajectories (see Trajectory Builder). The algorithm is equipped with a set of distance functions which are able to adapt to different analytical objectives." | none |
| TUNA_ATLAS_INDICATOR_1_SPECIES_BY_OCEAN | Julien Barde | SAI_IMPORTED | Proto | ./addAlgorithm.sh TUNA_ATLAS_INDICATOR_1_SPECIES_BY_OCEAN SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.TunaAtlasIndicator1SpeciesByOcean /gcube/devsec transducerers N http://data.d4science.org/Z1ViQWJiMWNZM2tncGhJR2pFRTdYR1Avb2lMNVRWVkhHbWJQNStIS0N6Yz0 "This visualization shows a time serie of Tuna Catches per species per ocean by using multiple interactive" | none |
| ICHTHYOP_MODEL_MULTIPLE_RUNS | Julien Barde | ICHTHYOP_MODEL | Prod | ./addAlgorithm.sh ICHTHYOP_MODEL_MULTIPLE_RUNS ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.Ichthyopmodelmultipleruns /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/RzlyVUZZR1hiN0VncGhJR2pFRTdYS0dVcVFUUi9CYW1HbWJQNStIS0N6Yz0 "This R code enables to extract multiple observed trajectories from data sources (FADs or Drifters) and to run (for each trajectory) an execution of Ichthyop driven by OSCAR data oin order to confront simulation with these observations. netCDF outputs are transformed into maps to be visualized with Qgis. Ichthyop is a free Java tool designed to study the effects of physical and biological factors on ichthyoplankton dynamics" | none |
| SHARK_ABUNDANCY | Baptiste Grenier | SAI_IMPORTED | Proto | ./addAlgorithm.sh SHARK_ABUNDANCY SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.SHARKAbundancy /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/SGlaOFpxVEhoeElkVllvYTdQZUlpa3Izd1VVcjl6WGxHbWJQNStIS0N6Yz0 "SHARK Abundancy simple computation" | none |
| PARALLELIZED_STEP1_VPA_ICCAT_BFT_E_RETROS | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh PARALLELIZED_STEP1_VPA_ICCAT_BFT_E_RETROS ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.parallelizedSTEP1VPAICCATBFTERetros /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/aFNQTXRkejVhekpMVDZKbUxib0RhUTIrdVRGUzc4eVpHbWJQNStIS0N6Yz0 "STEP 1: ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| SHARK_ABUNDANCY_ANALYSIS | Baptiste Grenier | SAI_IMPORTED | Proto | ./addAlgorithm.sh SHARK_ABUNDANCY_ANALYSIS SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.SharkAbundancyAnalysis /gcube/devsec transducerers N http://data.d4science.org/eHJBK3pjbEkzU1VkVllvYTdQZUlpb0FiT0wrWTNCWTJHbWJQNStIS0N6Yz0 "Shark test by B. Grenier" | deprecated |
| TUNA_ATLAS_DATA_ACCESS | Julien Barde | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh TUNA_ATLAS_DATA_ACCESS ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.TunaAtlasDataAccess /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/K2Q1dzlSOHA2WUFncGhJR2pFRTdYQXpSVUd4ZTg1MDlHbWJQNStIS0N6Yz0 "This R code enables users to adapt a SQL query to get data from Sardara database storing global" | none |
| FIGIS_SDMX_DATA_CONVERTER | Emmanuel Blondel | FIGIS_STATS | Prod | ./addAlgorithm.sh FIGIS_SDMX_DATA_CONVERTER FIGIS_STATS org.fao.fi.dataanalysis.stats.SDMXDataConverter /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/QmgxcTBHU0NNcXhMVDZKbUxib0RhYW1CTEx5NWZQMVJHbWJQNStIS0N6Yz0 "FIGIS_SDMX_DATA_CONVERTER" | none |
| ABSENCE_GENERATION_FROM_OBIS | Gianpaolo Coro | OCCURRENCES | Proto | ./addAlgorithm.sh ABSENCE_GENERATION_FROM_OBIS OCCURRENCES org.gcube.dataanalysis.executor.rscripts.AbsencegenerationfromOBIS /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/VVpPcTRUVnNlSVRDZWZucS9UQkJmVmt1VzhRWTFGVS9HbWJQNStIS0N6Yz0 "a test algorithm for the alg publisher" | none |
| FIGIS_SPATIAL_REALLOCATION_GENERIC | Emmanuel Blondel | FIGIS_SPREAD | Prod | ./addAlgorithm.sh FIGIS_SPATIAL_REALLOCATION_GENERIC FIGIS_SPREAD org.fao.fi.dataanalysis.spread.SpatialReallocationGenericAlgorithm /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/QmgxcTBHU0NNcXhMVDZKbUxib0RhYW1CTEx5NWZQMVJHbWJQNStIS0N6Yz0 "FIGIS_SPATIAL_REALLOCATION_GENERIC" | none |
| FIGIS_SPATIAL_REALLOCATION_SIMPLIFIED | Emmanuel Blondel | FIGIS_SPREAD | Prod | ./addAlgorithm.sh FIGIS_SPATIAL_REALLOCATION_SIMPLIFIED FIGIS_SPREAD org.fao.fi.dataanalysis.spread.SpatialReallocationSimplifiedAlgorithm /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/QmgxcTBHU0NNcXhMVDZKbUxib0RhYW1CTEx5NWZQMVJHbWJQNStIS0N6Yz0 "FIGIS_SPATIAL_REALLOCATION_SIMPLIFIED" | none |
| FAOMSY | Gianpaolo Coro | BAYESIAN_METHODS | Proto | ./addAlgorithm.sh FAOMSY BAYESIAN_METHODS org.gcube.dataanalysis.executor.nodes.algorithms.FAOMSY /gcube/devsec nodealgorithms N k "a test algorithm for the alg publisher" | deprecated |
| BIONYM_BIODIV | Gianpaolo Coro | TAXA | Proto | ./addAlgorithm.sh BIONYM_BIODIV TAXA org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymBiodiv /gcube/devsec nodealgorithms N k "a test algorithm for the alg publisher" | deprecated |
| ICCAT_VPA | Gianpaolo Coro | STOCK_ASSESSMENT | Proto | ./addAlgorithm.sh ICCAT_VPA STOCK_ASSESSMENT org.gcube.dataanalysis.executor.nodes.algorithms.ICCATVPA /gcube/devsec nodealgorithms N k "a test algorithm for the alg publisher" | deprecated |
| FIGIS_SPATIAL_REALLOCATION_SIMPLIFIED_TABLE | Emmanuel Blondel | FIGIS_SPREAD | Prod | ./addAlgorithm.sh FIGIS_SPATIAL_REALLOCATION_SIMPLIFIED_TABLE FIGIS_SPREAD org.fao.fi.dataanalysis.spread.SpatialReallocationSimplifiedTableAlgorithm /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/QmgxcTBHU0NNcXhMVDZKbUxib0RhYW1CTEx5NWZQMVJHbWJQNStIS0N6Yz0 "FIGIS_SPATIAL_REALLOCATION_SIMPLIFIED_TABLE" | none |
| CATCHES_BY_GEAR | Paul Taconet | SAI_IMPORTED | Proto | ./addAlgorithm.sh CATCHES_BY_GEAR SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.Catchesbygear /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/dVJlcmVKNVptMUJMVDZKbUxib0RhV1R5eWo3bGpVaVRHbWJQNStIS0N6Yz0 "The output is a plot of the catches by gear given the filters applied by the user" | deprecated |
| STEP_4_VPA_ICCAT_BFT_E_REPORT | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh STEP_4_VPA_ICCAT_BFT_E_REPORT ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.Step4VpaIccatBftEReport /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/eSthd0ZqV3Q3RlFITVN5UGF6TVZOK3FoWFh5MDBxdFlHbWJQNStIS0N6Yz0 "ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| HCAF_FILTER | system | FILTERING | Proto | ./addAlgorithm.sh HCAF_FILTER FILTERING org.gcube.dataanalysis.ecoengine.transducers.simplequeryexecutors.HcafFilter /gcube/devsec transducerers N k "legacy algorithm" | none |
| BIOCLIMATE_HSPEN | system | CLIMATE | Proto | ./addAlgorithm.sh BIOCLIMATE_HSPEN CLIMATE org.gcube.dataanalysis.ecoengine.transducers.BioClimateHSPENTransducer /gcube/devsec transducerers N k "legacy algorithm" | none |
| BIOCLIMATE_HSPEC | system | CLIMATE | Proto | ./addAlgorithm.sh BIOCLIMATE_HSPEC CLIMATE org.gcube.dataanalysis.ecoengine.transducers.BioClimateHSPECTransducer /gcube/devsec transducerers N k "legacy algorithm" | none |
| BIOCLIMATE_HCAF | system | CLIMATE | Proto | ./addAlgorithm.sh BIOCLIMATE_HCAF CLIMATE org.gcube.dataanalysis.ecoengine.transducers.BioClimateHCAFTransducer /gcube/devsec transducerers N k "legacy algorithm" | none |
| ABSENCE_CELLS_FROM_AQUAMAPS | system | OCCURRENCES | Proto | ./addAlgorithm.sh ABSENCE_CELLS_FROM_AQUAMAPS OCCURRENCES org.gcube.dataanalysis.ecoengine.transducers.simplequeryexecutors.MarineAbsencePointsFromAquamapsDistribution /gcube/devsec transducerers N k "legacy algorithm" | none |
| OCCURRENCES_SUBTRACTION | system | OCCURRENCES | Proto | ./addAlgorithm.sh OCCURRENCES_SUBTRACTION OCCURRENCES org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceSubtractionNode /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| OCCURRENCES_MERGER | system | OCCURRENCES | Proto | ./addAlgorithm.sh OCCURRENCES_MERGER OCCURRENCES org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| OCCURRENCES_MARINE_TERRESTRIAL | system | OCCURRENCES | Proto | ./addAlgorithm.sh OCCURRENCES_MARINE_TERRESTRIAL OCCURRENCES org.gcube.dataanalysis.ecoengine.transducers.OccurrencePointsInSeaOnEarth /gcube/devsec transducerers N k "legacy algorithm" | none |
| OCCURRENCES_INTERSECTOR | system | OCCURRENCES | Proto | ./addAlgorithm.sh OCCURRENCES_INTERSECTOR OCCURRENCES org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceIntersectionNode /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| OCCURRENCES_DUPLICATES_DELETER | system | OCCURRENCES | Proto | ./addAlgorithm.sh OCCURRENCES_DUPLICATES_DELETER OCCURRENCES org.gcube.dataanalysis.ecoengine.transducers.OccurrencePointsDuplicatesDeleter /gcube/devsec transducerers N k "legacy algorithm" | none |
| BIONYM_LOCAL | system | TAXA | Proto | ./addAlgorithm.sh BIONYM_LOCAL TAXA org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymLocalTransducer /gcube/devsec transducerers N k "legacy algorithm" | none |
| HCAF_INTERPOLATION | system | TIME_SERIES | Proto | ./addAlgorithm.sh HCAF_INTERPOLATION TIME_SERIES org.gcube.dataanalysis.ecoengine.transducers.InterpolationTransducer /gcube/devsec transducerers N k "legacy algorithm" | none |
| PRESENCE_CELLS_GENERATION | system | OCCURRENCES | Proto | ./addAlgorithm.sh PRESENCE_CELLS_GENERATION OCCURRENCES org.gcube.dataanalysis.ecoengine.transducers.simplequeryexecutors.MarinePresencePoints /gcube/devsec transducerers N k "legacy algorithm" | none |
| MOST_OBSERVED_SPECIES | system | OBIS_OBSERVATIONS_SPECIES_DATA | Proto | ./addAlgorithm.sh MOST_OBSERVED_SPECIES OBIS_OBSERVATIONS_SPECIES_DATA org.gcube.dataanalysis.trendylyzeralgorithms.AbsoluteSpeciesBarChartsAlgorithm /gcube/devsec transducerers N k "legacy algorithm" | none |
| MOST_OBSERVED_TAXA | system | OBIS_OBSERVATIONS_SPECIES_DATA | Proto | ./addAlgorithm.sh MOST_OBSERVED_TAXA OBIS_OBSERVATIONS_SPECIES_DATA org.gcube.dataanalysis.trendylyzeralgorithms.TaxaObservationsBarChartAlgorithm /gcube/devsec transducerers N k "legacy algorithm" | none |
| SPECIES_OBSERVATIONS_PER_AREA | system | OBIS_OBSERVATIONS_SPECIES_DATA | Proto | ./addAlgorithm.sh SPECIES_OBSERVATIONS_PER_AREA OBIS_OBSERVATIONS_SPECIES_DATA org.gcube.dataanalysis.trendylyzeralgorithms.SpeciesObservationsAreaBarChart /gcube/devsec transducerers N k "legacy algorithm" | none |
| SPECIES_OBSERVATIONS_TREND_PER_YEAR | system | OBIS_OBSERVATIONS_TRENDS | Proto | ./addAlgorithm.sh SPECIES_OBSERVATIONS_TREND_PER_YEAR OBIS_OBSERVATIONS_TRENDS org.gcube.dataanalysis.trendylyzeralgorithms.SpeciesObservationsPerYear /gcube/devsec transducerers N k "legacy algorithm" | none |
| SPECIES_OBSERVATION_LME_AREA_PER_YEAR | system | OBIS_OBSERVATIONS_TRENDS | Proto | ./addAlgorithm.sh SPECIES_OBSERVATION_LME_AREA_PER_YEAR OBIS_OBSERVATIONS_TRENDS org.gcube.dataanalysis.trendylyzeralgorithms.SpeciesObservationsPerLMEAreaPerYearLineChart /gcube/devsec transducerers N k "legacy algorithm" | none |
| SPECIES_OBSERVATION_MEOW_AREA_PER_YEAR | system | OBIS_OBSERVATIONS_TRENDS | Proto | ./addAlgorithm.sh SPECIES_OBSERVATION_MEOW_AREA_PER_YEAR OBIS_OBSERVATIONS_TRENDS org.gcube.dataanalysis.trendylyzeralgorithms.SpeciesObservationsPerMEOWAreaPerYearLineChart /gcube/devsec transducerers N k "legacy algorithm" | none |
| TAXONOMY_OBSERVATIONS_TREND_PER_YEAR | system | OBIS_OBSERVATIONS_TRENDS | Proto | ./addAlgorithm.sh TAXONOMY_OBSERVATIONS_TREND_PER_YEAR OBIS_OBSERVATIONS_TRENDS org.gcube.dataanalysis.trendylyzeralgorithms.TaxaObservationsPerYearLineChart /gcube/devsec transducerers N k "legacy algorithm" | none |
| GETTABLEDETAILS | system | DATABASES | Proto | ./addAlgorithm.sh GETTABLEDETAILS DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.GetTableDetails /gcube/devsec transducerers N k "legacy algorithm" | none |
| LISTDBINFO | system | DATABASES | Proto | ./addAlgorithm.sh LISTDBINFO DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.ListDBInfo /gcube/devsec transducerers N k "legacy algorithm" | none |
| LISTDBNAMES | system | DATABASES | Proto | ./addAlgorithm.sh LISTDBNAMES DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.ListNames /gcube/devsec transducerers N k "legacy algorithm" | none |
| LISTDBSCHEMA | system | DATABASES | Proto | ./addAlgorithm.sh LISTDBSCHEMA DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.ListSchemas /gcube/devsec transducerers N k "legacy algorithm" | none |
| LISTTABLES | system | DATABASES | Proto | ./addAlgorithm.sh LISTTABLES DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.ListTables /gcube/devsec transducerers N k "legacy algorithm" | none |
| RANDOMSAMPLEONTABLE | system | DATABASES | Proto | ./addAlgorithm.sh RANDOMSAMPLEONTABLE DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.RandomSampleOnTable /gcube/devsec transducerers N k "legacy algorithm" | none |
| SAMPLEONTABLE | system | DATABASES | Proto | ./addAlgorithm.sh SAMPLEONTABLE DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.SampleOnTable /gcube/devsec transducerers N k "legacy algorithm" | none |
| SUBMITQUERY | system | DATABASES | Proto | ./addAlgorithm.sh SUBMITQUERY DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.SubmitQuery /gcube/devsec transducerers N k "legacy algorithm" | none |
| XYEXTRACTOR | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh XYEXTRACTOR GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.XYExtraction /gcube/devsec transducerers N k "legacy algorithm" | none |
| XYEXTRACTOR_TABLE | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh XYEXTRACTOR_TABLE GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.XYExtractionTable /gcube/devsec transducerers N k "legacy algorithm" | none |
| ZEXTRACTION | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh ZEXTRACTION GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.ZExtraction /gcube/devsec transducerers N k "legacy algorithm" | none |
| ZEXTRACTION_TABLE | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh ZEXTRACTION_TABLE GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.ZExtractionTable /gcube/devsec transducerers N k "legacy algorithm" | none |
| TIMEEXTRACTION | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh TIMEEXTRACTION GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.TimeExtraction /gcube/devsec transducerers N k "legacy algorithm" | none |
| TIMEEXTRACTION_TABLE | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh TIMEEXTRACTION_TABLE GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.TimeExtractionTable /gcube/devsec transducerers N k "legacy algorithm" | none |
| TIME_GEO_CHART | system | CHARTS | Proto | ./addAlgorithm.sh TIME_GEO_CHART CHARTS org.gcube.dataanalysis.geo.algorithms.TimeGeoChartProtoucer /gcube/devsec transducerers N k "legacy algorithm" | none |
| TIME_SERIES_ANALYSIS | system | TIME_SERIES | Proto | ./addAlgorithm.sh TIME_SERIES_ANALYSIS TIME_SERIES org.gcube.dataanalysis.ecoengine.transducers.TimeSeriesAnalysis /gcube/devsec transducerers N k "legacy algorithm" | none |
| TIME_SERIES_CHARTS | system | CHARTS | Proto | ./addAlgorithm.sh TIME_SERIES_CHARTS CHARTS org.gcube.dataanalysis.ecoengine.transducers.charts.TimeSeriesChartsTransducerer /gcube/devsec transducerers N k "legacy algorithm" | none |
| KNITR_COMPILER | system | STOCK_ASSESSMENT | Proto | ./addAlgorithm.sh KNITR_COMPILER STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.KnitrCompiler /gcube/devsec transducerers N k "legacy algorithm" | deprecated |
| SGVM_INTERPOLATION | system | VESSELS | Proto | ./addAlgorithm.sh SGVM_INTERPOLATION VESSELS org.gcube.dataanalysis.executor.rscripts.SGVMS_Interpolation /gcube/devsec transducerers N k "legacy algorithm" | none |
| MAX_ENT_NICHE_MODELLING | system | BAYESIAN_METHODS | Proto | ./addAlgorithm.sh MAX_ENT_NICHE_MODELLING BAYESIAN_METHODS org.gcube.dataanalysis.geo.algorithms.MaxEnt4NicheModellingTransducer /gcube/devsec transducerers N k "legacy algorithm" | none |
| SEADATANET_INTERPOLATOR | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh SEADATANET_INTERPOLATOR GEO_PROCESSING org.gcube.dataanalysis.seadatanet.SeaDataNetConnector /gcube/devsec transducerers N k "legacy algorithm" | none |
| RASTER_DATA_PUBLISHER | system | PUBLISHING | Proto | ./addAlgorithm.sh RASTER_DATA_PUBLISHER PUBLISHING org.gcube.dataanalysis.geo.algorithms.RasterDataPublisher /gcube/devsec transducerers N k "legacy algorithm" | none |
| GEO_CHART | system | CHARTS | Proto | ./addAlgorithm.sh GEO_CHART CHARTS org.gcube.dataanalysis.geo.algorithms.StaticGeoChartProtoucer /gcube/devsec transducerers N k "legacy algorithm" | none |
| ESRI_GRID_EXTRACTION | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh ESRI_GRID_EXTRACTION GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.ESRIGRIDExtraction /gcube/devsec transducerers N k "legacy algorithm" | none |
| OCCURRENCE_ENRICHMENT | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh OCCURRENCE_ENRICHMENT GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.OccurrenceEnrichment /gcube/devsec transducerers N k "legacy algorithm" | none |
| POLYGONS_TO_MAP | system | MAPS | Proto | ./addAlgorithm.sh POLYGONS_TO_MAP MAPS org.gcube.dataanalysis.geo.algorithms.PolygonMapsCreator /gcube/devsec transducerers N k "legacy algorithm" | none |
| SPECIES_MAP_FROM_CSQUARES | system | MAPS | Proto | ./addAlgorithm.sh SPECIES_MAP_FROM_CSQUARES MAPS org.gcube.dataanalysis.geo.algorithms.SpeciesDistributionsMapsCreatorFromCsquares /gcube/devsec transducerers N k "legacy algorithm" | none |
| SPECIES_MAP_FROM_POINTS | system | MAPS | Proto | ./addAlgorithm.sh SPECIES_MAP_FROM_POINTS MAPS org.gcube.dataanalysis.geo.algorithms.SpeciesDistributionsMapsCreatorFromPoints /gcube/devsec transducerers N k "legacy algorithm" | none |
| GENERIC_CHARTS | system | CHARTS | Proto | ./addAlgorithm.sh GENERIC_CHARTS CHARTS org.gcube.dataanalysis.ecoengine.transducers.charts.QuantitiesAttributesChartsTransducerer /gcube/devsec transducerers N k "legacy algorithm" | none |
| POINTS_TO_MAP | system | MAPS | Proto | ./addAlgorithm.sh POINTS_TO_MAP MAPS org.gcube.dataanalysis.geo.algorithms.PointsMapsCreator /gcube/devsec transducerers N k "legacy algorithm" | none |
| CSQUARES_TO_COORDINATES | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh CSQUARES_TO_COORDINATES GEO_PROCESSING org.gcube.dataanalysis.geo.vti.CSquare2Coordinates /gcube/devsec transducerers N k "legacy algorithm" | none |
| CSQUARE_COLUMN_CREATOR | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh CSQUARE_COLUMN_CREATOR GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.CSquaresCreator /gcube/devsec transducerers N k "legacy algorithm" | none |
| FAO_OCEAN_AREA_COLUMN_CREATOR | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh FAO_OCEAN_AREA_COLUMN_CREATOR GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.FAOOceanAreaCreator /gcube/devsec transducerers N k "legacy algorithm" | none |
| FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT GEO_PROCESSING org.gcube.dataanalysis.geo.algorithms.FAOOceanAreaCreatorQuadrant /gcube/devsec transducerers N k "legacy algorithm" | none |
| GRID_CWP_TO_COORDINATES | system | GEO_PROCESSING | Proto | ./addAlgorithm.sh GRID_CWP_TO_COORDINATES GEO_PROCESSING org.gcube.dataanalysis.geo.vti.GridCWP2Coordinates /gcube/devsec transducerers N k "legacy algorithm" | none |
| EGIP_ENERGY_AGGREGATED_DISTRIBUTION | system | EGIP | Proto | ./addAlgorithm.sh EGIP_ENERGY_AGGREGATED_DISTRIBUTION EGIP org.gcube.dataanalysis.geothermal.EnergyHistogramAggregated /gcube/devsec transducerers N k "legacy algorithm" | none |
| EGIP_ENERGY_COUNTRY_DISTRIBUTION | system | EGIP | Proto | ./addAlgorithm.sh EGIP_ENERGY_COUNTRY_DISTRIBUTION EGIP org.gcube.dataanalysis.geothermal.EnergyHistogramPerCountry /gcube/devsec transducerers N k "legacy algorithm" | none |
| EGIP_ENERGY_TRENDS | system | EGIP | Proto | ./addAlgorithm.sh EGIP_ENERGY_TRENDS EGIP org.gcube.dataanalysis.geothermal.EnergyTrends /gcube/devsec transducerers N k "legacy algorithm" | none |
| EGIP_ENERGY_YEAR_DISTRIBUTION | system | EGIP | Proto | ./addAlgorithm.sh EGIP_ENERGY_YEAR_DISTRIBUTION EGIP org.gcube.dataanalysis.geothermal.EnergyHistogramPerYear /gcube/devsec transducerers N k "legacy algorithm" | none |
| ESTIMATE_FISHING_ACTIVITY | system | VESSELS | Proto | ./addAlgorithm.sh ESTIMATE_FISHING_ACTIVITY VESSELS org.gcube.dataanalysis.geo.vti.EstimateFishingActivity /gcube/devsec transducerers N k "legacy algorithm" | none |
| ESTIMATE_MONTHLY_FISHING_EFFORT | system | VESSELS | Proto | ./addAlgorithm.sh ESTIMATE_MONTHLY_FISHING_EFFORT VESSELS org.gcube.dataanalysis.geo.vti.EstimateMonthlyFishingEffort /gcube/devsec transducerers N k "legacy algorithm" | none |
| WEB_APP_PUBLISHER | system | PUBLISHING | Proto | ./addAlgorithm.sh WEB_APP_PUBLISHER PUBLISHING org.gcube.dataanalysis.executor.nodes.transducers.WebApplicationPublisher /gcube/devsec transducerers N k "legacy algorithm" | none |
| HRS | system | CORRELATION_ANALYSIS | Proto | ./addAlgorithm.sh HRS CORRELATION_ANALYSIS org.gcube.dataanalysis.ecoengine.evaluation.HabitatRepresentativeness /gcube/devsec evaluators N k "legacy algorithm" | none |
| QUALITY_ANALYSIS | system | PERFORMANCES_EVALUATION | Proto | ./addAlgorithm.sh QUALITY_ANALYSIS PERFORMANCES_EVALUATION org.gcube.dataanalysis.ecoengine.evaluation.DistributionQualityAnalysis /gcube/devsec evaluators N k "legacy algorithm" | none |
| DISCREPANCY_ANALYSIS | system | PERFORMANCES_EVALUATION | Proto | ./addAlgorithm.sh DISCREPANCY_ANALYSIS PERFORMANCES_EVALUATION org.gcube.dataanalysis.ecoengine.evaluation.DiscrepancyAnalysis /gcube/devsec evaluators N k "legacy algorithm" | none |
| MAPS_COMPARISON | system | MAPS | Proto | ./addAlgorithm.sh MAPS_COMPARISON MAPS org.gcube.dataanalysis.geo.algorithms.MapsComparator /gcube/devsec evaluators N k "legacy algorithm" | none |
| DBSCAN | system | DATA_CLUSTERING | Proto | ./addAlgorithm.sh DBSCAN DATA_CLUSTERING org.gcube.dataanalysis.ecoengine.clustering.DBScan /gcube/devsec clusterers N k "legacy algorithm" | none |
| LOF | system | DATA_CLUSTERING | Proto | ./addAlgorithm.sh LOF DATA_CLUSTERING org.gcube.dataanalysis.ecoengine.clustering.LOF /gcube/devsec clusterers N k "legacy algorithm" | none |
| KMEANS | system | DATA_CLUSTERING | Proto | ./addAlgorithm.sh KMEANS DATA_CLUSTERING org.gcube.dataanalysis.ecoengine.clustering.KMeans /gcube/devsec clusterers N k "legacy algorithm" | none |
| XMEANS | system | DATA_CLUSTERING | Proto | ./addAlgorithm.sh XMEANS DATA_CLUSTERING org.gcube.dataanalysis.ecoengine.clustering.XMeansWrapper /gcube/devsec clusterers N k "legacy algorithm" | none |
| AQUAMAPSNN | system | TRAINING | Proto | ./addAlgorithm.sh AQUAMAPSNN TRAINING org.gcube.dataanalysis.ecoengine.models.ModelAquamapsNN /gcube/devsec models N k "legacy algorithm" | none |
| BIONYM | system | TAXA | Proto | ./addAlgorithm.sh BIONYM TAXA org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymFlexibleWorkflowTransducer /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| LWR | system | BAYESIAN_METHODS | Proto | ./addAlgorithm.sh LWR BAYESIAN_METHODS org.gcube.dataanalysis.executor.nodes.algorithms.LWR /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| CMSY | system | BAYESIAN_METHODS | Proto | ./addAlgorithm.sh CMSY BAYESIAN_METHODS org.gcube.dataanalysis.executor.nodes.algorithms.CMSY /gcube/devsec nodealgorithms N k "legacy" | deprecated |
| HSPEN | system | TRAINING | Proto | ./addAlgorithm.sh HSPEN TRAINING org.gcube.dataanalysis.ecoengine.models.ModelHSPEN /gcube/devsec models N k "legacy algorithm" | none |
| FEED_FORWARD_ANN | system | TRAINING | Proto | ./addAlgorithm.sh FEED_FORWARD_ANN TRAINING org.gcube.dataanalysis.ecoengine.models.FeedForwardNN /gcube/devsec models N k "legacy algorithm" | none |
| BIONYM_BIODIV | system | TAXA | Proto | ./addAlgorithm.sh BIONYM_BIODIV TAXA org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymBiodiv /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| AQUAMAPS_NATIVE | system | SPECIES_SIMULATION | Proto | ./addAlgorithm.sh AQUAMAPS_NATIVE SPECIES_SIMULATION org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsNativeNode /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| AQUAMAPS_NATIVE_2050 | system | SPECIES_SIMULATION | Proto | ./addAlgorithm.sh AQUAMAPS_NATIVE_2050 SPECIES_SIMULATION org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsNative2050Node /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| AQUAMAPS_SUITABLE | system | SPECIES_SIMULATION | Proto | ./addAlgorithm.sh AQUAMAPS_SUITABLE SPECIES_SIMULATION org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| AQUAMAPS_SUITABLE_2050 | system | SPECIES_SIMULATION | Proto | ./addAlgorithm.sh AQUAMAPS_SUITABLE_2050 SPECIES_SIMULATION org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitable2050Node /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| FAOMSY | system | BAYESIAN_METHODS | Proto | ./addAlgorithm.sh FAOMSY BAYESIAN_METHODS org.gcube.dataanalysis.executor.nodes.algorithms.FAOMSY /gcube/devsec nodealgorithms N k "legacy algorithm" | none |
| FEED_FORWARD_A_N_N_DISTRIBUTION | system | BAYESIAN_METHODS | Proto | ./addAlgorithm.sh FEED_FORWARD_A_N_N_DISTRIBUTION BAYESIAN_METHODS org.gcube.dataanalysis.ecoengine.spatialdistributions.FeedForwardNeuralNetworkDistribution /gcube/devsec algorithms N k "legacy algorithm" | none |
| SHAPEFILE_PUBLISHER | system | PUBLISHING | Proto | ./addAlgorithm.sh SHAPEFILE_PUBLISHER PUBLISHING org.gcube.dataanalysis.geo.algorithms.ShapefilePublisher /gcube/devsec transducerers N k "An algorithm to publish shapefiles" | none |
| ENSEMBLE_MODEL | Robert Thorpe | STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh ENSEMBLE_MODEL STOCK_ASSESSMENT org.gcube.dataanalysis.ensemble.EnsembleAlgorithm /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/dVIyUFF6MEZqeGxmcElhcUlmQUpWbFhCVXZiaitENjZHbWJQNStIS0N6Yz0 "Ensemble Model" | none |
| SIMULFISHKPIS | Gerasimos Antzoulatos | SAI_IMPORTED | Proto | ./addAlgorithm.sh SIMULFISHKPIS SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.SimulFishKPIs /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/SUpSTUxQTHdPODRncGhJR2pFRTdYUGttSXlDM21xS25HbWJQNStIS0N6Yz0 "Create simulation models for KPIs fish production in Aquaculture. Import data from SimulFish Growth database via URLs. Calculated KPIs are FCR, SFR, Mortality using Regression models generated by GAMs and MARs methodologies. Updated version on 30.08.2016" | none |
| SHARK_TEST_ALGORITHM | Matthias Obst | SAI_IMPORTED | Dev | ./addAlgorithm.sh SHARK_TEST_ALGORITHM SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.sharktestalgorithm /gcube/devsec transducerers N http://data.d4science.org/QjNKTngyeTU2U2dncGhJR2pFRTdYQ0xQaWJQM1QrdXRHbWJQNStIS0N6Yz0 "SHARK_TEST_ALGORITHM is a test algorithm" | deprecated |
| MPA_INTERSECT | Emmanuel Blondel | SAI_IMPORTED | Dev | ./addAlgorithm.sh MPA_INTERSECT SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.MPAIntersect /gcube/devsec transducerers N http://data.d4science.org/czhpU1ZPSUgwME1ncGhJR2pFRTdYR1hkNTkzcW5hL0xHbWJQNStIS0N6Yz0 "An algorithm to intersect MPA polygons with WFS spatial data layers" | none |
| READWFS | Emmanuel Blondel | SAI_IMPORTED | Proto | ./addAlgorithm.sh READWFS SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.ReadWFS /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/NmZTT2lKcWZmQWhmcElhcUlmQUpWdXpjemVPUVdzcDlHbWJQNStIS0N6Yz0 "Read WFS requests and export attributes" | none |
| VPA_ICCAT_BFT_E_REPORT STOCK_ASSESSMENT | Taha Imzilen | STOCK_ASSESSMENT | Dev | ./addAlgorithm.sh VPA_ICCAT_BFT_E_REPORT STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.VPAICCATBFTEReport /gcube/devsec transducerers N http://data.d4science.org/a0lwdTN3RDd1bHdITVN5UGF6TVZOMzhFdnhSUXBlQWJHbWJQNStIS0N6Yz0 "ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| MAKE_ICHTHYOP_NETCDF_CF_COMPLIANT | system | ICHTHYOP_MODEL | Prod | ./addAlgorithm.sh MAKE_ICHTHYOP_NETCDF_CF_COMPLIANT ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.MakeichthyopnetCDFCFcompliant /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/K29Sd3hkRW1LajRITVN5UGF6TVZOeFZoM3dYQXdXRXRHbWJQNStIS0N6Yz0 "This code turns ichthyop netCDF into another netCDF whis is compliant with CF conventions and enables agreggation with NCML files" | none |
| ICHTHYOP_NETCDF_OUTPUT_TO_SHAPEFILE | system | ICHTHYOP_MODEL | Prod | ./addAlgorithm.sh ICHTHYOP_NETCDF_OUTPUT_TO_SHAPEFILE ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.IchthyopnetCDFoutputtoshapefile /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/cHNISmZsMFZhbHNITVN5UGF6TVZOd0dVSkowQ09uOWdHbWJQNStIS0N6Yz0 "This code turns trajectories of ichthyop model outputs delivered with netCDF into a shapefile" | none |
| GENERIC_WORKER | system | SYSTEM | Dev | ./addAlgorithm.sh GENERIC_WORKER SYSTEM org.gcube.dataanalysis.executor.job.management.GenericWorker /gcube/devNext/NextNext transducerers N k "generic worker" | none |
| ECOPATH_WITH_ECOSIM | Paolo Fabriani | STOCK_ASSESSMENT | Dev | ./addAlgorithm.sh ECOPATH_WITH_ECOSIM STOCK_ASSESSMENT org.gcube.dataanalysis.ewe.SimpleEwE /gcube/devNext/NextNext transducerers N http://data.d4science.org/eDd5b2ovMmpSVEZaZWYvY3g2bDZNcGRFNUIxNi85UFlHbWJQNStIS0N6Yz0 "EwE" | none |
| CATCHES_BY_GEARS | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_BY_GEARS ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesbygears /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/SHBWcmdYWWtiNnhaZWYvY3g2bDZNdlRRQWk0RXhkU3NHbWJQNStIS0N6Yz0 "The output is a plot of the catches by gears for tuna fisheries given the filters applied by the user" | none |
| PROJECTIONS_REPORT_VPA_ICCAT_BFT_E | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh PROJECTIONS_REPORT_VPA_ICCAT_BFT_E ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.ProjectionsreportVPAICCATBFTE /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/LzkxVUM2QkRHcUpaZWYvY3g2bDZNcUpMZ25uanFuUHlHbWJQNStIS0N6Yz0 "Projections_report: ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| COMPUTE_FISHERIES_INDICATORS_FROM_OWN_FORMATTED_DATASET | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh COMPUTE_FISHERIES_INDICATORS_FROM_OWN_FORMATTED_DATASET ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Computefisheriesindicatorsfromownformatteddataset /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/NzNXemNiU3hlelBDZWZucS9UQkJmWE10V09PYlhDQmVHbWJQNStIS0N6Yz0 "Compute some fisheries indicators (plots and maps) from a dataset that you have previously formatted and imported through the algorithm Import Fisheries Formatted Dataset. The codes to use for the filters in this algorithm must be the input dataset ones." | none |
| IMPORT_FISHERIES_FORMATTED_DATASET___QUICK_IMPORT | Paul Taconet | TRANSFORM_AND_LOAD_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh IMPORT_FISHERIES_FORMATTED_DATASET___QUICK_IMPORT TRANSFORM_AND_LOAD_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.ImportFisheriesFormattedDatasetQuickimport /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/N2RMRjZBMG9xeUJaZWYvY3g2bDZNa2Q0WWxjMWVOOEtHbWJQNStIS0N6Yz0 "Import into the global database a dataframe that has previously been formatted to the standard database format. After the import you will be able to compute the fisheries indicators (e.g. the algorithm Compute fisheries indicators from own formatted dataset) using your data." | none |
| GENETICALGORITHM | Scott Large | SAI_IMPORTED | Proto | ./addAlgorithm.sh GENETICALGORITHM SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.GeneticAlgorithm /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/QU83eG1NTkJrQjFaZWYvY3g2bDZNdDV1ZUN4S29RK2xHbWJQNStIS0N6Yz0 "Genetic Algorithm" | none |
| CATCHES_AGGREGATED_FOLLOWING_A_SELECT_VARIABLE | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_AGGREGATED_FOLLOWING_A_SELECT_VARIABLE ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesaggregatedfollowingaselectvariable /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/VWo2QXEycmQ0dERDZWZucS9UQkJmVmFpejZqdnlVTjRHbWJQNStIS0N6Yz0 "The outputs are temporal and spatial distribution of the catches aggregated following a selected variable and given the filters applied by the user" | none |
| SMARTSAMPLEONTABLE | System | DATABASES | Dev | ./addAlgorithm.sh SMARTSAMPLEONTABLE DATABASES org.gcube.dataaccess.algorithms.drmalgorithms.SmartSampleOnTable /gcube/devsec transducerers N k "legacy algorithm" | none |
| WTG | Gianpaolo Coro | ENVRI | Proto | ./addAlgorithm.sh WTG ENVRI org.gcube.dataanalysis.executor.rscripts.WTG /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/TmhZTkY2ZDlnbVRaWExsNnlZU1FWUmx4Z1E4SE9HYTFHbWJQNStIS0N6Yz0 "An algorithm to process Eiscat sites data" | none |
| NCOUTPUTS2CSV_VPA_ICCAT_BFT_E | Taha Imzilen | ICCAT_EASTERN_BFT_STOCK_ASSESSMENT | Proto | ./addAlgorithm.sh NCOUTPUTS2CSV_VPA_ICCAT_BFT_E ICCAT_EASTERN_BFT_STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.ncOutputs2csvVPAICCATBFTE /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/eUUyRjVxeFdPeHdUQ29LNWFERGs5RUkzQnN2RUVxaTdHbWJQNStIS0N6Yz0 "ncOutputs2csv: ICCAT (Eastern) Bluefin Tuna Stock Assessment. This set of R and Fortran code have been provided by ICCAT and IFremer to execute the whole Stock assessment workflow online integration has been done with the help (mediation) of CNR and IRD" | none |
| CMSY_2 | system | STOCK_ASSESSMENT | Prod | ./addAlgorithm.sh CMSY_2 STOCK_ASSESSMENT org.gcube.dataanalysis.executor.rscripts.CMSY2 /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/d2J1RFRLOGw0TEJHV05FbExrRDJjd3dvbDY1aHBDc3RHbWJQNStIS0N6Yz0 "CMSY 2 method" | none |
| CATCHES_AGGREGATED_FOLLOWING_A_SELECTED_DIMENSION | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Prod | ./addAlgorithm.sh CATCHES_AGGREGATED_FOLLOWING_A_SELECTED_DIMENSION ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesaggregatedfollowingaselecteddimension /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/enhFTFVFZVhnOXBHV05FbExrRDJjODBmY3hxaHorYjJHbWJQNStIS0N6Yz0 "The outputs are temporal and spatial distribution of the catches aggregated following a selected variable and given the filters applied by the user" | none |
| CATCHES_AGGREGATED_FOLLOWING_A_SELECTED_DIMENSION_V2 | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh CATCHES_AGGREGATED_FOLLOWING_A_SELECTED_DIMENSION_V2 ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesaggregatedfollowingaselecteddimensionv2 /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/SEQ0ZytYV0REQzhUQ29LNWFERGs5Rnh4YlN1Ulg2OTRHbWJQNStIS0N6Yz0 "The outputs are temporal and spatial distribution of the catches aggregated following a selected variable and given the filters applied by the user" | none |
| FEED_FORWARD_NEURAL_NETWORK_TRAINER | Paolo Scarponi | BAYESIAN_METHODS | Prod | ./addAlgorithm.sh FEED_FORWARD_NEURAL_NETWORK_TRAINER BAYESIAN_METHODS org.gcube.data.analysis.algorithms.neuralnetworks.feedforward.FeedForwardNeuralNetworkTrainer /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/L29XZXQ3Vk04L2tUQ29LNWFERGs5SFdRdy9Db1NZQThHbWJQNStIS0N6Yz0 "The algorithm trains a Feed Forward Artificial Neural Network using an online Back Propagation procedure and returns the training error and a binary file containing the trained network" | none |
| FEED_FORWARD_NEURAL_NETWORK_REGRESSOR | Paolo Scarponi | BAYESIAN_METHODS | Prod | ./addAlgorithm.sh FEED_FORWARD_NEURAL_NETWORK_REGRESSOR BAYESIAN_METHODS org.gcube.data.analysis.algorithms.neuralnetworks.feedforward.FeedForwardNeuralNetworkRegressor /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/Uk44eTVtK0d6a2dUQ29LNWFERGs5QUh1QUJqV21UZkVHbWJQNStIS0N6Yz0 "The algorithm simulate a real-valued vector function using a trained Feed Forward Artificial Neural Network and returns a table containing the function actual inputs and the predicted outputs" | none |
| FEED_FORWARD_NEURAL_NETWORK_CLOUD_REGRESSOR | Paolo Scarponi | BAYESIAN_METHODS | Prod | ./addAlgorithm.sh FEED_FORWARD_NEURAL_NETWORK_CLOUD_REGRESSOR BAYESIAN_METHODS org.gcube.data.analysis.algorithms.neuralnetworks.feedforward.FeedForwardNeuralNetworkCloudRegressor /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab nodealgorithms N http://data.d4science.org/L3g4WWk3VklLa3RHV05FbExrRDJjNXVCMnpHcmNJMVFHbWJQNStIS0N6Yz0 "The algorithm simulate a real-valued vector function using a trained Feed Forward Artificial Neural Network and returns a table containing the function actual inputs and the predicted outputs" | none |
| CATCHES_AGGREGATED_FOLLOWING_A_SELECTED_DIMENSION_V3 | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh CATCHES_AGGREGATED_FOLLOWING_A_SELECTED_DIMENSION_V3 ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Catchesaggregatedfollowingaselecteddimensionv3 /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/NmVmcHVQK05XdWdtN2ovZkNaVkVMQ1hmNnpUSFlMNkVHbWJQNStIS0N6Yz0 "The outputs are temporal and spatial distribution of the catches aggregated following a selected variable and given the filters applied by the user" | none |
| CATCHES_INDICATORS_IOTC_REST_SERVICES | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh CATCHES_INDICATORS_IOTC_REST_SERVICES ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.catchesindicatorsiotcrestservices /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/VHQ0QUdLL2VuU1lZbks5UW5zajNsT2RjZ05NQ2U2QjRHbWJQNStIS0N6Yz0 "Get a set of catches indicators from the IOTC database using IOTC rest services" | none |
| GEOGRSF_INTERSECTS | Emmanuel Blondel | SAI_IMPORTED | Proto | ./addAlgorithm.sh GEOGRSF_INTERSECTS SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.GeoGRSFIntersects /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/cGpzWTMzNENmRU5jZk9qTytQTndqaDVMYUtEM3dPNWNHbWJQNStIS0N6Yz0 "GeoGRSF_Intersects" | none |
| SPATIAL_DISTRIBUTION_OF_CORRELATION | Taha Imzilen | ICHTHYOP_MODEL | Proto | ./addAlgorithm.sh SPATIAL_DISTRIBUTION_OF_CORRELATION ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.SPATIALDISTRIBUTIONOFCORRELATION /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/QnBBaitEdVlaWk5jZk9qTytQTndqbDE3NHJKTmlxR0FHbWJQNStIS0N6Yz0 "plot of the spatial distribution of correlation for two variables in a dataframe" | none |
| KAPPA_COEFFICIENT | system | CORRELATION_ANALYSIS | Proto | ./addAlgorithm.sh KAPPA_COEFFICIENT CORRELATION_ANALYSIS org.gcube.data.analysis.algorithms.kstatistics.KStatistics /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/V0lzeDl2azZhYVpjZk9qTytQTndqblV6WlJ4WEdKeVVHbWJQNStIS0N6Yz0 "This procedure is designed to measure the agreement level among a certain number of raters about the classification of a given set or records. The measurement is carried out using two different metrics depending on the number of raters being equal to two (Cohen's Kappa Coefficient) or greater than two (Fleiss' Kappa Coefficient)" | none |
| TRANSFORM_IOTC_CATCH_AND_EFFORT_DSD_CECOASTAL_AND_CESURFACE | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh TRANSFORM_IOTC_CATCH_AND_EFFORT_DSD_CECOASTAL_AND_CESURFACE ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.TransformIOTCCatchandeffortDSDCECoastalandCESurface /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/aENZM0FIRVhxSm5pdkQ2MEpNbDVKd0Q5aVdQaVF1OWpHbWJQNStIS0N6Yz0 "This script first converts the raw IOTC task 2 CECoastal and CESurface DSD to a pivot DSD that is common to all the IOTC Catch-and-effort datasets. Afterwards it converts this IOTC pivot DSD to the harmonized DSD common to all the RFMOs." | none |
| LOAD_CATCHES_DATASET_IN_SARDARA | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh LOAD_CATCHES_DATASET_IN_SARDARA ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Loadcatchesdatasetinsardara /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/TEkwMk5jUXFLMGxjZk9qTytQTndqazI3R3N4SVJoMlVHbWJQNStIS0N6Yz0 "Load a catches dataset and associated metadata in Sardara Database. The dataset has to be formatted with the harmonized data structure definition which is: Flag | Gear |
| LOAD_EFFORTS_DATASET_IN_SARDARA | Paul Taconet | ACCESS_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh LOAD_EFFORTS_DATASET_IN_SARDARA ACCESS_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.Loadeffortsdatasetinsardara /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/elRwTTBHZE92ejVjZk9qTytQTndqbkh6WHJnUGU1dVpHbWJQNStIS0N6Yz0 "Load an efforts dataset and associated metadata in Sardara Database. The dataset has to be formatted with the harmonized data structure definition which is: Flag | Gear |
| SCATTERPLOTDIAGRAM | Taha Imzilen | ICHTHYOP_MODEL | Proto | ./addAlgorithm.sh SCATTERPLOT_DIAGRAM ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.SCATTERPLOTDIAGRAM /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/blMvZFd1VTRsS2ZpdkQ2MEpNbDVKektyMklYK3BQRzhHbWJQNStIS0N6Yz0 "mathematical diagram using Cartesian coordinates to display values for typically two variables for a set of data" | none |
| SPATIAL_DENSITY_DISTRIBUTION | Taha Imzilen | ICHTHYOP_MODEL | Proto | ./addAlgorithm.sh SPATIAL_DENSITY_DISTRIBUTION ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.SPATIALDENSITYDISTRIBUTION /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/S1ZNbXovekk4K3hjZk9qTytQTndqbTZxRXJ2Mi9ybjZHbWJQNStIS0N6Yz0 "plot of the spatial density distribution of a variable in a dataframe" | none |
| GEOGRSF_BBOXLIST | Emmanuel Blondel | SAI_IMPORTED | Proto | ./addAlgorithm.sh GEOGRSF_BBOXLIST SAI_IMPORTED org.gcube.dataanalysis.executor.rscripts.GeoGRSFBboxlist /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/aXh6WWZCT1lnRFRpdkQ2MEpNbDVKMytrdzZXSW9HemlHbWJQNStIS0N6Yz0 "GeoGRSF_Bboxlist" | none |
| AQUAMAPS_NATIVE_NEURALNETWORK | system | SPECIES_SIMULATION | Proto | ./addAlgorithm.sh AQUAMAPS_NATIVE_NEURALNETWORK SPECIES_SIMULATION org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsNN /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab nodealgorithms N k "legacy algorithm" | none |
| AQUAMAPS_SUITABLE_NEURALNETWORK | system | SPECIES_SIMULATION | Proto | ./addAlgorithm.sh AQUAMAPS_SUITABLE_NEURALNETWORK SPECIES_SIMULATION org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsNNSuitable /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab nodealgorithms N k "legacy algorithm" | none |
| SHAPEFILE_IMPORTER | system | PUBLISHING | Proto | ./addAlgorithm.sh SHAPEFILE_IMPORTER PUBLISHING org.gcube.data.analysis.algorithms.shapefileimporter.ShapefileImporter /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/YTFMWjBrTmU2SS91WGpvZm9xSDBZWmJoOEhqcUNEdkVHbWJQNStIS0N6Yz0 "An algorithm to publish shapefiles under WMS and WFS standards in the e-Infrastructure. The produced WMS, WFS links are reported as output of this process and the map will be available in the VRE for consultation." | none |
| SMOOTH_SCATTERPLOT_DIAGRAM | Taha Imzilen | ICHTHYOP_MODEL | Proto | ./addAlgorithm.sh SMOOTH_SCATTERPLOT_DIAGRAM ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.SMOOTHSCATTERPLOTDIAGRAM /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/MEhCSnJJT1pjRmRxTFcrK3JyVGI3QXhSWDFlN1NTRXRHbWJQNStIS0N6Yz0 "mathematical diagram using Cartesian coordinates to display values for typically two variables for a set of data" | none |
| ENRICHMENT_FROM_NETCDF | Taha Imzilen | ICHTHYOP_MODEL | Proto | ./addAlgorithm.sh ENRICHMENT_FROM_NETCDF ICHTHYOP_MODEL org.gcube.dataanalysis.executor.rscripts.EnrichmentFromNetcdf /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/WXVSNXFaSDM1SUpxTFcrK3JyVGI3RnArNjA3Y3laR01HbWJQNStIS0N6Yz0 "This process take in parameter a spatio-temporal dataset and an OPeNDAP dataset URL and try to enrich the input dataset with OPeNDAP data. Input dataset must be an csv file of point geometry only (actually)" | none |
| CREATE_YOUR_OWN_VERSION_OF_THE_TUNA_ATLAS | Paul Taconet | CREATE_OWN_TUNA_ATLAS | Proto | ./addAlgorithm.sh CREATE_YOUR_OWN_VERSION_OF_THE_TUNA_ATLAS CREATE_OWN_TUNA_ATLAS org.gcube.dataanalysis.executor.rscripts.CreateyourownversionoftheTunaAtlas /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/NFcwOTdXRExRRUJxTFcrK3JyVGI3SnFiOUw0VjZibHhHbWJQNStIS0N6Yz0 "This algorithm allows a user to create its own regional or global tuna altas. It takes as input the latest public domain datasets of the five Tuna Regional Fisheries Management Organizations (IOTC,ICCAT,WCPFC,IATTC,CCSBT) stored within the Sardara database. It proposes a set of parameters to customize the computation of the tuna atlas. In addition to the output dataset it returns a set of information regarding the transformations that are made during the processing" | none |
| LOAD_A_DATASET_IN_SARDARA_DATABASE | Paul Taconet | TRANSFORM_AND_LOAD_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh LOAD_A_DATASET_IN_SARDARA_DATABASE TRANSFORM_AND_LOAD_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.LoadadatasetinSardaraDatabase /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/YlBycExUUnQ2b1JCbkhObjF6T0YzaWlrck1zbFo1a0tHbWJQNStIS0N6Yz0 "Load a dataset and associated metadata in Sardara Database. The dataset has to be formatted with the harmonized data structure definition which is: for catches: flag,gear,time_start,time_end,area,schooltype,species,catchtype,catchunit,v_catch; for efforts : flag,gear,time_start,time_end,area,school,effortunit,v_effort; for catch-at-size : flag,gear,time_start,time_end,area,schooltype,species,sex,catchtype,catchunit,size_step,size_min,v_catch. In case one or several dimension(s) (i.e. column(s)) is/are missing in the dataset to upload it/they will automatically be set to NULL. Additional columns rfmo and ocean might exist in the dataset to upload but are not mandatory." | none |
| SAMPLE_KNIME_WORKFLOW | system | WORKFLOWS | Proto | ./addAlgorithm.sh SAMPLE_KNIME_WORKFLOW WORKFLOWS org.gcube.dataanalysis.executor.rscripts.SampleKnimeWorkflow /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/cHl3RkVuMWNkSDFCbkhObjF6T0YzaVp6aEFYblJPaVdHbWJQNStIS0N6Yz0 "A sample algorithms that invokes a Knime Workflow" | none |
| KNIME_WORKSPACE_FILE_UPLOADER | system | WORKFLOWS | Proto | ./addAlgorithm.sh KNIME_WORKSPACE_FILE_UPLOADER WORKFLOWS org.gcube.dataanalysis.executor.rscripts.KnimeWorkspaceFileUploader /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/RVlFTk02WFlQZlVzRkZjbUNWc0V3enAvMko3SUIxK0VHbWJQNStIS0N6Yz0 "Knime Workflow to upload a file onto the Workspace" | none |
| MAXANDSAM_NETWORK_RECONTRUCTION_METHOD | Tiziano Squartini | NETWORK_RECONSTRUCTION | Proto | ./addAlgorithm.sh MAXANDSAM_NETWORK_RECONTRUCTION_METHOD NETWORK_RECONSTRUCTION org.gcube.dataanalysis.executor.rscripts.MaxAndSamNetworkRecontructionMethod /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/Y0dCYlJqa3FCV0V1d1c5NHc3aDRhenh4Mm1nY1BPa3pHbWJQNStIS0N6Yz0 "Reconstructing networks from partial information" | none |
| DEBTRANK_SYSTEMIC_RISK_ESTIMATION | Tiziano Squartini | SYSTEMIC_RISK_ESTIMATION | Proto | ./addAlgorithm.sh DEBTRANK_SYSTEMIC_RISK_ESTIMATION SYSTEMIC_RISK_ESTIMATION org.gcube.dataanalysis.executor.rscripts.DebtRankSystemicRiskEstimation /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/RG02T1k5emdJUW91d1c5NHc3aDRhNmpLWXk0RVBjOXdHbWJQNStIS0N6Yz0 "Systemic risk estimation through the calculation of the DebtRank index" | none |
| TRANSFORM_CCSBT_TASK2_LONGLINE | Paul Taconet | TRANSFORM_AND_LOAD_TUNA_ATLAS_DATA | Proto | ./addAlgorithm.sh TRANSFORM_CCSBT_TASK2_LONGLINE TRANSFORM_AND_LOAD_TUNA_ATLAS_DATA org.gcube.dataanalysis.executor.rscripts.TransformCCSBTtask2Longline /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/MU5GS0pmNkJzV0V1d1c5NHc3aDRhd0pGSmVMSG9xNUZHbWJQNStIS0N6Yz0 "Convert the structure of CCSBT catch and effort datasets task 2 Longline to the harmonized data structure that is used as input of the toolbox" | none |
| PROJECT_SIMULFISHKPIS_DEV | Gerasimos Antzoulatos | DEVELOPMENT | Proto | ./addAlgorithm.sh PROJECT_SIMULFISHKPIS_DEV DEVELOPMENT org.gcube.dataanalysis.executor.rscripts.ProjectSimulFishKPIsDEV /d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab transducerers N http://data.d4science.org/cXcrMnMvTzllY0VHVmZMUUdvR2UrbVhMZTlDMmRCWDlHbWJQNStIS0N6Yz0 "Project SimulFishKPIs for development purposes" | none |
Updated by Gianpaolo Coro about 8 years ago
- Status changed from In Progress to Closed
This table will be automatically managed by the deployment system. Indeed, so far it has been updated by the installation bot.
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