StocksAndFisheriesKB

An example for testing, we spotted that these two records can be merged:

da7c918f-b370-361c-9251-b4e06aa45d11 Penaeus aztecus - Gulf of Mexico asfis:ABS+lme:5 pending 13893

f8da143d-4b0c-3565-a639-06177cfb626b Farfantepenaeus aztecus - Gulf of Mexico asfis:ABS+unk:USA-NMFS-GM pending BRNSHRIMPGM

FYI:
@bracken.vanniekerk@fao.org

@luca.frosini@isti.cnr.it in order to test its behavior,
can we change the URL of the service used from the management panel (now it should be http://updater.grsf.d4science.org/grsf-services-updater) to another hosted in our premises? I can provide you with the public URL of the service.

Any updates on this?

@francesco.mangiacrapa@isti.cnr.it Are you sure it is this one and not https://updater.grsf.d4science.org/grsf-services-updater/ ?

I just tried doing some activities with the management panel and I see that the second one is used.

@marketak@ics.forth.gr I just performed a test trying to manage a record via "Manage Item" (at https://i-marine.d4science.org/group/grsf_admin/data-catalogue)

The record is the first one in the list, it is http://data.d4science.org/ctlg/GRSF_Admin/99904192-d6fd-39e1-9995-a8a2985b1177

The logs are:

2020-12-17 14:49:10,911 INFO  manage.GRSFNotificationService [ajp-bio-8009-exec-17,notifyProductUpdate:351] %14:49:10,911 INFO  [ajp-bio-8009-exec-17][GRSFNotificationService:351] Creating notification for the bean ManageProductBean [catalogueIdentifier=eb56e191-e6c9-4949-a9c3-939df7fe622b, currentGrsfType=Assessment Unit, newGrsfType=Assessment Unit, shortNameUpdated=Benguela hake - Angola, traceabilityFlag=false, sdgFlag=false, currentStatus=Approved, newStatus=Pending, annotation=test, sources=[SourceRecord [name=FIRMS]], similarGrsfRecords=[SimilarGRSFRecord [record=GenericRecord [knowledgeBaseId=1b81351d-4f54-3734-8d2e-e8410175163e, description=overlapping areas and same species, shortName=Benguela Hake West Africa Subgroup 3, title=Merluccius polli - Central Gulf of Guinea - Southern Gulf of Guinea - 47.1.3. - Cape Salinas - Cape Palmeirinhas, url=http://data.d4science.org/ctlg/GRSF_Admin/1b81351d-4f54-3734-8d2e-e8410175163e, semanticIdentifier=asfis:HKB+fao:34.3.5;fao:34.3.6;fao:47.1.1;fao:47.1.2;fao:47.1.3., domain=Stock], suggestedMerge=false]], suggestedByKnowledgeBaseConnections=[], suggestdByAdministratorConnections=[], currentConnections=[], connections=[], mergesInvolved=false, report=_-Information of the record managed:_ - GRSF Name 'Merluccius polli - Cunene - Cape Salinas - Cape Palmeirinhas' ;_   - Short Name 'Benguela hake - Angola' ;_    - URL 'http://data.d4science.org/ctlg/GRSF_Admin/99904192-d6fd-39e1-9995-a8a2985b1177' ;_   - Semantic Identifier 'asfis:HKB+fao:47.1.1;fao:47.1.2;fao:47.1.3' ;_   - Database Sources involved: FIRMS ;_- The GRSF Type is unchanged;_- Suggested merges:_- Annotation message is: test;_- The Status has been changed to 'Pending'., hashtags=[Pending], GenericRecord=GenericRecord [knowledgeBaseId=99904192-d6fd-39e1-9995-a8a2985b1177, description=Short Name: Benguela hake - Angola_GRSF Semantic identifier: asfis:HKB+fao:47.1.1;fao:47.1.2;fao:47.1.3_Record URL: http://data.d4science.org/ctlg/GRSF_Admin/99904192-d6fd-39e1-9995-a8a2985b1177, shortName=Benguela hake - Angola, title=Merluccius polli - Cunene - Cape Salinas - Cape Palmeirinhas, url=http://data.d4science.org/ctlg/GRSF_Admin/99904192-d6fd-39e1-9995-a8a2985b1177, semanticIdentifier=asfis:HKB+fao:47.1.1;fao:47.1.2;fao:47.1.3, domain=Stock]] to send to the knowledge base [Sanitized]
2020-12-17 14:49:10,919 INFO  o.g.r.d.i.Helper [ajp-bio-8009-exec-17,queryAddAuthenticationControl:200][PORTAL] 629138448 [ajp-bio-8009-exec-17] INFO  org.gcube.resources.discovery.icclient.Helper - submitting filtered query: declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; declare namespace functx = "http://www.functx.com"; declare function functx:is-value-in-sequence   ( $value as xs:anyAtomicType? , $seq as xs:anyAtomicType* )  as xs:boolean { $value = $seq } ;  for  $entry0ValueAuth in  collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource/Scopes   where  (functx:is-value-in-sequence('/d4science.research-infrastructures.eu/FARM/GRSF_Admin',$entry0ValueAuth/child::*[local-name()='Scope']/text()))  and ( ($entry0ValueAuth/../Profile/Name/text() eq 'GRSF Updater') and ($entry0ValueAuth/../Profile/Category/text() eq 'Service')  ) return $entry0ValueAuth/..
2020-12-17 14:49:10,946 INFO  o.g.d.g.s.m.GRSFUpdaterServiceClient [ajp-bio-8009-exec-17,updateKB:147][PORTAL] 629138475 [ajp-bio-8009-exec-17] INFO  org.gcube.datacatalogue.grsf_manage_widget.server.manage.GRSFUpdaterServiceClient - Update request looks like {"old_status":"approved","annotation_message":"test","new_status":"pending","knowledge_base_id":"99904192-d6fd-39e1-9995-a8a2985b1177","similar_grsf_records":[{"merge":false,"knowledge_base_id":"1b81351d-4f54-3734-8d2e-e8410175163e"}],"grsf_type_old":"Assessment Unit","short_name_new":"Benguela hake - Angola","catalog_id":"eb56e191-e6c9-4949-a9c3-939df7fe622b","sdg_flag":false,"grsf_type_new":"Assessment Unit","traceability_flag":false,"administrator_name":"Francesco Mangiacrapa","short_name_old":"Benguela hake - Angola","connections":[]}
2020-12-17 14:49:10,946 INFO  o.g.d.g.s.m.GRSFUpdaterServiceClient [ajp-bio-8009-exec-17,updateKB:149][PORTAL] 629138475 [ajp-bio-8009-exec-17] INFO  org.gcube.datacatalogue.grsf_manage_widget.server.manage.GRSFUpdaterServiceClient - Sending request to http://athena.ics.forth.gr:9000/grsf-services-updater/service/updater/post
2020-12-17 14:49:11,461 ERROR o.g.d.g.s.m.Utils [ajp-bio-8009-exec-17,updateRecord:243]java.lang.IllegalArgumentException: Update failed for the following reason An error occured while retrieving the record URI and type using a particular UUID
    at org.gcube.datacatalogue.grsf_mana

as you can see the request is sent to http://athena.ics.forth.gr:9000/grsf-services-updater/service/updater/post

@marketak@ics.forth.gr, let me know if you want to change that URL and how (from http://athena.ics.forth.gr:9000/grsf-services-updater to ?)

Thanks @francesco.mangiacrapa@isti.cnr.it . For the moment do not change anything. Let me make some test and I'll let you know

Dear CNR and FORTH colleagues, this is a kind reminder for this long awaited issue and ticket, which so much prevent our colleagues to review and approve/merge/archive records in their autonomy.
Thanks in advance for your consideration
@bracken.vanniekerk@fao.org
@anton.ellenbroek@fao.org
@marketak@ics.forth.gr
@francesco.mangiacrapa@isti.cnr.it
@luca.frosini@isti.cnr.it
@pasquale.pagano@isti.cnr.it

@aureliano.gentile@fao.org

Have you tried it? It seems to be working.

Thanks a lot Yannis, I was not aware it was fixed. (Also, FishSource colleagues recently reported it was not working.)

I see you made some changes (and hopefully revert them). I also added an annotation text and seems working (although then I cannot remove it, but that is another story).

Furthermore, in the NewsFeed https://i-marine.d4science.org/group/imarine-gateway this link

You can inspect it here: http://data.d4science.org/ctlg/GRSF_Admin/a0bddbe4-1ccb-365e-98da-7c4f7a20f49b.

is broken since it is pointing to

http://data.d4science.org/ctlg/GRSF_Admin/a0bddbe4-1ccb-365e-98da-7c4f7a20f49b.%3Cbr%3E

but I guess this is for @francesco.mangiacrapa@isti.cnr.it or @massimiliano.assante@isti.cnr.it ?

With whom should I liaise to improve (simplify) the feed?

@francesco.mangiacrapa@isti.cnr.it please check the latest comment from Aureliano.

Hi, the link gets broken because some HTML code is present in the post, and this is not permitted.

You can inspect it here: http://data.d4science.org/ctlg/GRSF_Admin/a0bddbe4-1ccb-365e-98da-7c4f7a20f49b.<br> <br>This is a summary of the actions proposed: <br>
-Information of the record managed:

Please replace the BR tags with new lines. Alternatively you can simply add a space between the dot and the BR tag.

In my opinion, @marketak@ics.forth.gr, if on the KB-side the business logic is OK (see previous #20203#note-13), this activity could be closed.
I just opened the new one (#23406) and after the patch that will be released to fix #23408, a new test of the "GRSF Management Panel" will be performed (by @aureliano.gentile@fao.org)