D4science

Mar 26, 2019

05:50 PM StocksAndFisheriesKB Feature #16372 (New): Add download facility for the CKan catalogue

As per discussion on the 26 March 2019 https://support.d4science.org/projects/stocksandfisherieskb/wiki/19-03-26-GRSF... Aureliano Gentile

02:54 PM StocksAndFisheriesKB Feature #12278: Complete Citation development

Attached you will find the list with the stocks missing creation date.
Yannis Marketakis

11:15 AM StocksAndFisheriesKB Feature #12278: Complete Citation development

yes, in some old files, sorry for that. I think in this case it should remain empty since the issue is on the source ... Aureliano Gentile

11:07 AM StocksAndFisheriesKB Feature #12278: Complete Citation development

Of course. Some indicative ones I found are:
* http://firms.fao.org/fishery/xml/resource/10122/en
* http://firms... Yannis Marketakis

10:49 AM StocksAndFisheriesKB Feature #12278: Complete Citation development

Thanks for your patience, can you please provide one or more example of missing year value so I can check what's wrong? Aureliano Gentile

09:43 AM StocksAndFisheriesKB Feature #12278: Complete Citation development

Some months ago, we have exchanged this doc (https://docs.google.com/document/d/1W7-GSTLFL28bZ8ejJC3O8Bi47kWIvvPCNCq5... Yannis Marketakis

02:37 PM ISTI Open Access Feature #16361 (Closed): new joomla site

The configuration is complete. Andrea Dell'Amico

12:50 PM ISTI Open Access Feature #16361 (In Progress): new joomla site

Andrea Dell'Amico

11:21 AM ISTI Open Access Feature #16361: new joomla site

Sembra che quelli di ISMAR abbiano creato un alias nel loro DNS: **openportal.ismar.cnr.it**
Quindi occorre gesti... Anonymous

10:39 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

Here a list of accented words and characters found in FIRMS
**Country names**
* Côte d'Ivoire
* São Tomé e Prínc... Aureliano Gentile

10:38 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

The issue disappeared only for the two records that are mentioned above (I updated only those).
For sure if we repu... Yannis Marketakis

10:34 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

Thanks a lot to all, do you confirm the accented words issue is over for all of them, or do we need to republish or w... Aureliano Gentile

10:10 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

Thank you Luca Frosini

10:10 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

Perfectly fine.
Works as expected. Yannis Marketakis

10:36 AM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

Thanks, I understand the problem of updating, but fixing a few of them randomly does not help much. Maybe @merul.pate... Aureliano Gentile

10:01 AM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

Aureliano Gentile wrote:
> Thanks. The practical rule mentioned by Yannis "the type of the stock is "Assessment unit... Yannis Marketakis

Mar 25, 2019

12:17 PM ISTI Open Access Feature #16361 (Closed): new joomla site

Can you prepare a new joomla site under openportal.isti.cnr.it?
It should be named: ismar-demo.openportal.isti.cnr... Michele Artini

09:40 AM StocksAndFisheriesKB Bug #12421 (Closed): Accented words are not properly displayed in the "short name" field and in other fields

The patched service is available.
@marketak@ics.forth.gr, can you please try to update one of the identified records?
Luca Frosini

Mar 24, 2019

10:21 AM StocksAndFisheriesKB Bug #16306: Species not included in ASFIS database

Thanks Marina,
if the species is not recognized, the system still keep it with "unk:" as coding system.
But in ... Aureliano Gentile

08:52 AM StocksAndFisheriesKB Bug #16264: capitalized grsf short names

Dear Mike,
Obviously no need to apologize, since the beginning of the GRSF we said that it would have helped also... Aureliano Gentile

Mar 23, 2019

09:41 AM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

Thanks. The practical rule mentioned by Yannis "the type of the stock is "Assessment unit", whenever a stock assessme... Aureliano Gentile

09:34 AM StocksAndFisheriesKB Feature #12278: Complete Citation development

Sorry, I understand the comment was not clear enough. My point was that the legacy firms fact sheet was not updated i... Aureliano Gentile

09:22 AM StocksAndFisheriesKB Bug #16281: SFP fishing gears not under the ISSCFG code

yes, thanks, please proceed at your convenience Aureliano Gentile

Mar 22, 2019

10:02 AM StocksAndFisheriesKB Bug #16281: SFP fishing gears not under the ISSCFG code

OK I will update this (and the corresponding GRSF records).
If this is OK, we will do it for other cases as well (i.... Yannis Marketakis

09:52 AM StocksAndFisheriesKB Feature #12278: Complete Citation development

The issue is not clear to me here.
I see that the latest comment from @aureliano.gentile@fao.org is about "FAO 2018... Yannis Marketakis

09:42 AM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

Of course. Just let me know when ready. Yannis Marketakis

Mar 21, 2019

06:05 PM StocksAndFisheriesKB Feature #16312 (Feedback): GRSF Manage widget: report the name of the editor as tag in the published feed

The GRSF Manage Widget has been updated with the new feature. A test will be performed and, if passed, this ticket wi... Francesco Mangiacrapa

05:53 PM StocksAndFisheriesKB Feature #16312 (In Progress): GRSF Manage widget: report the name of the editor as tag in the published feed

Francesco Mangiacrapa

05:16 PM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

@marketak@ics.forth.gr as soon I deploy the new version of the service can you try to republish one of the record att... Luca Frosini

05:09 PM StocksAndFisheriesKB Bug #12421: Accented words are not properly displayed in the "short name" field and in other fields

The bug has been solved. The service will be deployed as soon as ETICS build the artefact. Luca Frosini

05:02 PM StocksAndFisheriesKB Bug #12421 (In Progress): Accented words are not properly displayed in the "short name" field and in other fields

Luca Frosini

05:14 PM StocksAndFisheriesKB Feature #12278: Complete Citation development

@marketak@ics.forth.gr yesterday I had a phone conference with @aureliano.gentile@fao.org about the citation.
If you... Luca Frosini

Mar 20, 2019

02:54 PM StocksAndFisheriesKB Feature #16312 (Closed): GRSF Manage widget: report the name of the editor as tag in the published feed

A new requirement from: https://support.d4science.org/projects/stocksandfisherieskb/wiki/19-03-20-GRSF_tickets
In ... Francesco Mangiacrapa

12:41 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

Thank you, Yannis.
Both examples shown in note #10 above are Stocks/AssessmentUnits in FishSource, therefore should... Marina Mendes

10:38 AM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

According to the GRSF rules the type of the stock is "Assessment unit", whenever a stock assessment is conducted and ... Yannis Marketakis

11:01 AM StocksAndFisheriesKB Bug #16281: SFP fishing gears not under the ISSCFG code

Thanks a lot, I checked in the Wiki requirement https://support.d4science.org/projects/stocksandfisherieskb/wiki/GRSF... Aureliano Gentile

10:48 AM StocksAndFisheriesKB Bug #16281: SFP fishing gears not under the ISSCFG code

I confirm that the sfp_gear exists in the source record.
@aureliano.gentile@fao.org can you please suggest the name ... Yannis Marketakis

Mar 19, 2019

04:43 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

of the examples we have shared above, all are currently identified correctly as assessment units in bluebridge, excep... Marina Mendes

11:27 AM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

WRT comment 8, the API is definitely returning the root record as an 'AssessmentUnit':... Merul Patel

04:01 PM StocksAndFisheriesKB Bug #16306 (Closed): Species not included in ASFIS database

Hi
Etrumeus teres is the scientific name of a species that is currently known to be only found in the Atlantic and... Marina Mendes

01:55 PM StocksAndFisheriesKB Bug #16275: national authority not showing

I think this one is similar to #13250? Marina Mendes

11:19 AM StocksAndFisheriesKB Bug #16275: national authority not showing

We have added an acronym for the Suriname Fisheries Department, so this is now being returned in the API:... Merul Patel

Mar 18, 2019

05:20 PM StocksAndFisheriesKB Bug #13334 (In Progress): FS type of record harvesting logic

Our API does return nested Assessment Units, see for example the data returned for the *American Sea Scallop - US Atl... Merul Patel

05:15 PM StocksAndFisheriesKB Bug #16281 (In Progress): SFP fishing gears not under the ISSCFG code

I've checked the Fisheries endpoint for this fishery (https://www.fishsource.org/api/bluebridge/v4/fisheries/3547) an... Merul Patel

05:12 PM StocksAndFisheriesKB Bug #16275 (In Progress): national authority not showing

I've checked the *Stocks* endpoint and also the *Fisheries* endpoint (https://www.fishsource.org/api/bluebridge/v4/fi... Merul Patel

Mar 15, 2019

11:07 AM D4Science Infrastructure Task #13245 (Closed): Remove test resources from production

Done Roberto Cirillo

10:56 AM D4Science Infrastructure Task #5440 (Closed): DataMiner in the SoBigData.eu VRE

Gianpaolo Coro

10:52 AM D4Science Infrastructure Task #5440 (Feedback): DataMiner in the SoBigData.eu VRE

This ticket is very very old could we close it?
Now the new SoBigData VREs are switched under SoBigData VO and seve... Roberto Cirillo

10:52 AM D4Science Infrastructure Task #5440 (In Progress): DataMiner in the SoBigData.eu VRE

Roberto Cirillo

Mar 14, 2019

06:18 PM D4Science Infrastructure Task #13183: Remove the services running on SmartArea VO

Removed catalogue-ws by ansible Roberto Cirillo

05:36 PM D4Science Infrastructure Task #13183: Remove the services running on SmartArea VO

Removed icproxy service (registry.d4science.org) by ansible. Roberto Cirillo

12:39 PM D4Science Infrastructure Task #13183: Remove the services running on SmartArea VO

Removed sdi service by Ansible Roberto Cirillo

11:12 AM D4Science Infrastructure Task #13183 (Feedback): Remove the services running on SmartArea VO

accounting services removed.
I've tried also to remove thredds and rstudio instances but I've the following exceptio... Roberto Cirillo

10:13 AM D4Science Infrastructure Task #13183: Remove the services running on SmartArea VO

Dataminer and StorageHub have been removed during the last upgrade. Now I'm going to remove the accouting services. Roberto Cirillo

04:53 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

another example of an AU/stock in FS: https://www.fishsource.org/stock_page/2053 being recognized as a marine resourc... Marina Mendes

12:17 PM StocksAndFisheriesKB Bug #16281 (Closed): SFP fishing gears not under the ISSCFG code

Hi Merul
Handlines hand operated is a type of fishing gear created by SFP (within Hooks and lines group) and not r... Marina Mendes

Mar 13, 2019

06:47 PM StocksAndFisheriesKB Bug #16275 (Closed): national authority not showing

Hi Merul
the following record from Suriname:
http://data.d4science.org/ctlg/GRSF_Admin/6d27d693-878d-33ba-829a-f... Marina Mendes

12:24 PM StocksAndFisheriesKB Bug #16264 (Closed): capitalized grsf short names

I checked the RAM source db V.4.35 and the capitalized names are in the "Stock" worksheet "stocklong" column.
In ... Aureliano Gentile

12:01 PM StocksAndFisheriesKB Bug #16262 (Closed): Spelling error in area name of a RAM record

This record contains a spelling error: it should be **Northwest**
http://data.d4science.org/ctlg/GRSF_Admin/40f5d27d... Aureliano Gentile

11:20 AM StocksAndFisheriesKB Bug #16261 (Closed): FAO3alpha code missing for 2 RAM records

For whatever reason two RAM records are without fao3alpha code
The species is **Cleisthenes herzensteini** and the... Aureliano Gentile

Mar 08, 2019

04:08 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

In example here the iso3 country code for the authority is still missing http://data.d4science.org/ctlg/GRSF_Admin/f8... Aureliano Gentile

03:48 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thanks, I trust that fix is applied to all records and future records generation Aureliano Gentile

03:41 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

You are right!
Just updated it. Yannis Marketakis

02:04 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

With many thanks for this work.
I see a strange "-" following the authority:NAT:HND in the semantic identifier of t... Aureliano Gentile

11:23 AM StocksAndFisheriesKB Bug #13250 (Feedback): Honduran management organization acronym not appearing

Both records (the legacy and the GRSF one) have been updated. Yannis Marketakis

11:18 AM D4Science Infrastructure Task #12703 (Closed): Public pages visualised by data miner services and proxies

Giancarlo Panichi

11:14 AM StocksAndFisheriesKB Bug #13347 (Closed): Cannot update or publish legacy records

It works as expected.
Thanks @luca.frosini@isti.cnr.it Yannis Marketakis

10:51 AM StocksAndFisheriesKB Bug #13347 (Feedback): Cannot update or publish legacy records

@marketak@ics.forth.gr the patched service is available. Luca Frosini

Mar 07, 2019

02:44 PM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

The service has been patched. We have to wait for ETICS build to update the service.
I'm reopening the upgrade ticket. Luca Frosini

12:35 PM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

Yes, these fields (as well as the refers_to) are mandatory for GRSF records Yannis Marketakis

11:01 AM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

Summarizing:
traceability_flag and status are not mandatory for legacy records. I'll not check for them.
Do I h... Luca Frosini

10:57 AM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

The fields traceability_flag and status are optional for legacy records so remove them.
The field short_name is OK. Yannis Marketakis

10:51 AM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

Hi @marketak@ics.forth.gr
thanks for your feedback.
apart refers_to, the code performs the following checks:
... Luca Frosini

10:25 AM StocksAndFisheriesKB Bug #13347 (In Progress): Cannot update or publish legacy records

@luca.frosini@isti.cnr.it thanks for the update.
I am facing a similar issue. Now it fails because it is missing t... Yannis Marketakis

10:46 AM StocksAndFisheriesKB Bug #16223: Duplicated data in Abundance level time series

@aureliano.gentile@fao.org I cannot find the errors you mentioned.
Taking for example line 9 from the XLS I see tha... Yannis Marketakis

Mar 05, 2019

04:46 PM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

@marketak@ics.forth.gr let me know if it works for you. Luca Frosini

04:45 PM StocksAndFisheriesKB Bug #13347 (Closed): Cannot update or publish legacy records

The patched service has been deployed Luca Frosini

Mar 04, 2019

05:03 PM StocksAndFisheriesKB Bug #16223 (Closed): Duplicated data in Abundance level time series

Similarly to ticket https://support.d4science.org/issues/13300 (Duplicated data in Fishing pressure time series), RAM... Aureliano Gentile

01:00 PM D4Science Infrastructure Task #13283 (Closed): PERFORMFISH_DATA_VALIDATOR_V2 fails on garr dataminer instance

Gianpaolo Coro

Feb 28, 2019

05:05 PM D4Science Infrastructure VRE #12959 (Released): EOSC Pilot VisualMedia VRE

Massimiliano Assante

02:33 PM ISTI Open Access Feature #12662 (In Progress): Cater for hosting publications on ISTI premises and maching them available

The FTP is up and running at http://ftp.openportal.isti.cnr.it/
It was agreed that the open access version of the ... Leonardo Candela

Feb 27, 2019

02:37 PM ISTI Open Access Support #16178 (Closed): Joomla Security Update

Andrea Dell'Amico

01:23 PM ISTI Open Access Support #16178 (Feedback): Joomla Security Update

Done. The second configuration entry cannot be applied to our apache server, it works with apache versions newer that... Andrea Dell'Amico

01:17 PM ISTI Open Access Support #16178 (In Progress): Joomla Security Update

Andrea Dell'Amico

12:46 PM ISTI Open Access Support #16178 (Closed): Joomla Security Update

Message after the last Joomla update:
~~~
.htaccess & web.config security Update
Since version 3.9.3
Since Jo... Michele Artini

11:33 AM StocksAndFisheriesKB Bug #13334: FS type of record harvesting logic

Hi Merul, could you please check Susana's request?
Thank you! Marina Mendes

09:45 AM StocksAndFisheriesKB Bug #13347 (In Progress): Cannot update or publish legacy records

Luca Frosini

Feb 26, 2019

05:08 PM ISTI Open Access Support #16161 (Closed): FTP

Andrea Dell'Amico

05:04 PM ISTI Open Access Support #16161: FTP

Ok Andrea, perfetto. Adesso entro e anche le credenziali non mi hanno dato problemi.
Grazie, ciao
Silvia Anonymous

03:03 PM ISTI Open Access Support #16161 (Feedback): FTP

Puoi provare adesso? Andrea Dell'Amico

03:00 PM ISTI Open Access Support #16161 (In Progress): FTP

Nei dati che hai indicato c'è tutto quel che serve. Andrea Dell'Amico

02:59 PM ISTI Open Access Support #16161 (Closed): FTP

Ciao Andrea,
noi non entriamo sul sito FTP, probabilmente perchè siamo sulla sottorete di area. Che informazioni ti ... Anonymous