D4science

Apr 03, 2018

06:52 PM D4Science Infrastructure VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

As we discussed, all the applications should be installable from a public repository. I can create the VM in the mean... Andrea Dell'Amico

03:43 PM D4Science Infrastructure Support #11561: OpenAIRE-Connect user cannot access the OpenAIRE-Connect redmine but can login into the VRE

Massimiliano Assante wrote:
> Andrea Dell'Amico wrote:
> > Keep in mind that the portal (VRE) and redmine could hav... Andrea Dell'Amico

03:00 PM D4Science Infrastructure Support #11561: OpenAIRE-Connect user cannot access the OpenAIRE-Connect redmine but can login into the VRE

Keep in mind that the portal (VRE) and redmine could have different usernames/password.
Maybe it's time to change t... Andrea Dell'Amico

02:10 PM D4Science Infrastructure Task #11548 (Closed): Create a ldap replica in the garr-pa1 region

I've found and fixed the problem. Now there's a `README_ldap.md` file that explains the procedure and offers some com... Andrea Dell'Amico

Mar 30, 2018

07:17 PM D4Science Infrastructure Task #11548: Create a ldap replica in the garr-pa1 region

The replica has been configured in the same way of the other one, but it's not working.
Andrea Dell'Amico

03:14 PM D4Science Infrastructure Task #11548 (In Progress): Create a ldap replica in the garr-pa1 region

Andrea Dell'Amico

Mar 29, 2018

06:13 PM D4Science Infrastructure Task #11546 (Closed): Create a instance at in the garr-pa1 region to act as shell server and ssh proxy

The VM is ready. Access is granted with the ldap username (and root, if needed).
Andrea Dell'Amico

Mar 28, 2018

09:00 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

The problem with the interfaces on dlib 14x/17x is bad. There's no way to make them working reliably it seems. I trie... Andrea Dell'Amico

05:06 PM D4Science Infrastructure Task #11522 (Feedback): Provide a cronjob for removing old access.log files

In installed the cron jobs for the users `gcube` and `gcube3`.
Andrea Dell'Amico

05:05 PM D4Science Infrastructure Task #11522 (In Progress): Provide a cronjob for removing old access.log files

Andrea Dell'Amico

11:31 AM D4Science Infrastructure Task #11548 (Closed): Create a ldap replica in the garr-pa1 region

To be used by the local instances. Andrea Dell'Amico

11:29 AM D4Science Infrastructure Task #11546 (Closed): Create a instance at in the garr-pa1 region to act as shell server and ssh proxy

It is going to be used as a proxy to reach the instances without a public IP address Andrea Dell'Amico

11:08 AM D4Science Infrastructure Task #2106 (Closed): Install Joomla for the new PUMA portal

Andrea Dell'Amico

Mar 27, 2018

04:55 PM D4Science Infrastructure Task #2106 (Feedback): Install Joomla for the new PUMA portal

I just enabled the ULR shortening and it's working. Andrea Dell'Amico

04:42 PM D4Science Infrastructure Task #2106: Install Joomla for the new PUMA portal

OK, I'm starting now.
Andrea Dell'Amico

02:08 PM D4Science Infrastructure Task #2106: Install Joomla for the new PUMA portal

The Joomla redirect rules do not work on the apache version installed on the VM. We must move from apache to nginx, t... Andrea Dell'Amico

03:12 PM D4Science Infrastructure VM Creation #11509: Create a VM for hosting VocBench

We do not know what to install on it yet. I can create an empty VM, for now.
Andrea Dell'Amico

02:10 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

Was the change on node66 done manually or by ansible?
Andrea Dell'Amico

Mar 26, 2018

07:47 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

All the hosts are up. Andrea Dell'Amico

Mar 25, 2018

07:44 PM D4Science Infrastructure VM Creation #11482 (Feedback): Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org

Andrea Dell'Amico

07:20 PM D4Science Infrastructure VM Creation #11482: Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org

(it seems that this `anonymous` thing is working). Andrea Dell'Amico

Mar 23, 2018

07:43 PM D4Science Infrastructure VM Creation #11482: Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org

There's a problem with one of the plugins, I'll deal with it in the w.e.
Andrea Dell'Amico

04:18 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

I've found the configuration dashboards that was missing. I never tried to click directly on the network name :-(.
N... Andrea Dell'Amico

01:39 PM D4Science Infrastructure Task #11513 (Feedback): Dataminer - Update playbook

I double checked the playbook and it downloads - and installs - the latest version from maven.
The contents of the d... Andrea Dell'Amico

Mar 22, 2018

08:06 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

The hyperconverged host installation went well, but I'm now stuck because there should be a configuration section in ... Andrea Dell'Amico

04:22 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

about the firewall rules: it's possible to use the `direct rules` functionality of firewalld, to add plain iptables r... Andrea Dell'Amico

12:34 PM D4Science Infrastructure VM Creation #11482: Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org

Andrea Dell'Amico wrote:
> Catalogue username (solr id): bluebridge_catalogue_two
Sorry: bluebridge_catalogue_one... Andrea Dell'Amico

12:34 PM D4Science Infrastructure VM Creation #11482: Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org

Catalogue username (solr id): bluebridge_catalogue_two
Andrea Dell'Amico

11:59 AM D4Science Infrastructure VM Creation #11439: Preproduction GeoServer 2.10.5

What was the matter? So if we need to copy the geoserver data again, we know how to do it properly. Andrea Dell'Amico

Mar 21, 2018

02:03 PM D4Science Infrastructure VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

Massimiliano Assante wrote:
> Applicable for NLPHub not for the others derived from my prortytpe and developed by Cl... Andrea Dell'Amico

02:02 PM D4Science Infrastructure VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

Pasquale Pagano wrote:
> Third, each single exploitation of the application is not heavy but we hope to have sever... Andrea Dell'Amico

01:59 PM D4Science Infrastructure Support #11500 (Feedback): Error updating GRSF service with ansible

Use the smartgears-node.yml playbook, the other one needs a user with root access to the nagios server.
Other than... Andrea Dell'Amico

Mar 20, 2018

06:30 PM D4Science Infrastructure Task #11450 (Feedback): Install Knime 3.5

knime 3.5.2 has been installed everywhere. It can be invoked as `/usr/local/bin/knime` (or simply `knime` as `/usr/lo... Andrea Dell'Amico

06:08 PM D4Science Infrastructure Task #11450: Install Knime 3.5

But is it OK to remove the old versions, anyway?
Andrea Dell'Amico

05:48 PM D4Science Infrastructure Task #11450 (In Progress): Install Knime 3.5

knime 3.5.2 just replaced knime(-full) 3.2.2 on the dev dataminers dataminer[1:2]-d-d4s.d4science.org. @gianpaolo.cor... Andrea Dell'Amico

06:07 PM D4Science Infrastructure VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

Do you know the applications context names yet or do I have to reverse proxy `/`?
Who do must have access to the V... Andrea Dell'Amico

05:56 PM D4Science Infrastructure VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

Also, please fill in reasonable values for ram, cpu and disk space. Andrea Dell'Amico

05:53 PM D4Science Infrastructure VM Creation #11492: Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

> We take care of deploying war in the tomcat instance. No need for tomcat manager activated.
That should neve... Andrea Dell'Amico

05:55 PM D4Science Infrastructure VM Creation #11439: Preproduction GeoServer 2.10.5

As I'm out of town until Thursday it's maybe better if you do it by yourself.
Stop the geoserver running in geoser... Andrea Dell'Amico

04:48 PM D4Science Infrastructure VM Creation #11439: Preproduction GeoServer 2.10.5

@fabio.sinibaldi@isti.cnr.it did you try to move all the `data` directory contents up one level, as I wrote in #11442... Andrea Dell'Amico

11:13 AM D4Science Infrastructure VM Creation #11482: Create a new ckan instance for BB catalogue: ckan-bb1.d4science.org

ckan-bluebridge.d4science.org will be the hostname associated to the load balancer (it already is).
Andrea Dell'Amico

Mar 19, 2018

08:08 PM D4Science Infrastructure Task #11442 (Feedback): Copy data_dir to new instances

Data copied on geoserver1-d-d4s.d4science.org.
On both hosts, under `/srv/geoserver_data/data`. I don't know if it... Andrea Dell'Amico

07:04 PM D4Science Infrastructure Task #11442 (In Progress): Copy data_dir to new instances

data copied into the preproduction geoserver instance. Andrea Dell'Amico

08:04 PM D4Science Infrastructure Task #11446 (Feedback): Update Development Geoserver to 2.10.5

Geoserver upgraded to 2.10.5, with additional resources.
Andrea Dell'Amico

07:15 PM D4Science Infrastructure Task #11446 (In Progress): Update Development Geoserver to 2.10.5

Andrea Dell'Amico

07:03 PM D4Science Infrastructure VM Creation #11439 (Feedback): Preproduction GeoServer 2.10.5

All the data has been copied. Andrea Dell'Amico

06:51 PM D4Science Infrastructure VM Creation #11439: Preproduction GeoServer 2.10.5

The server is up. I'm copying the data from geoserver-dev.d4science-ii.research-infrastructures.eu. No DB configurati... Andrea Dell'Amico

03:53 PM D4Science Infrastructure VM Creation #11439 (In Progress): Preproduction GeoServer 2.10.5

Hostname and IP are going to be: geoserver1-t.pre.d4science.org 146.48.123.27 Andrea Dell'Amico

06:46 PM D4Science Infrastructure Task #11369 (Closed): VMs with docker do not start the firewall correctly at boot time

Successfully tested. Andrea Dell'Amico

03:46 PM D4Science Infrastructure Task #11369 (Feedback): VMs with docker do not start the firewall correctly at boot time

I have a fix that I'm going to test at the next service reconfiguration.
Andrea Dell'Amico

03:31 PM D4Science Infrastructure Task #11369 (In Progress): VMs with docker do not start the firewall correctly at boot time

I'm implementing the following option: the docker demon will be restarted just after the iptables service. No contain... Andrea Dell'Amico

Mar 18, 2018

06:29 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

I've reported the required steps and links to the documentation in the internal wiki: https://support.d4science.org/p... Andrea Dell'Amico

05:19 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

Update:
I was able to complete the installation of the oVirt engine in virtualized/HA mode, and the installation o... Andrea Dell'Amico

Mar 14, 2018

08:09 PM D4Science Infrastructure Task #11442: Copy data_dir to new instances

Is it OK to settle for `/srv/geoserver_data` as data directory? All the recent geoservers use that path.
Andrea Dell'Amico

08:07 PM D4Science Infrastructure VM Creation #11439: Preproduction GeoServer 2.10.5

About the DB part: do we need any new database or do we stay with the old ones?
Andrea Dell'Amico

Mar 13, 2018

09:02 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

Still no progress. I've something else to try tomorrow, after than I'll install the engine host outside a VM.
Andrea Dell'Amico

08:45 PM D4Science Infrastructure Task #11395 (Feedback): Reinstall dlib8x.dom0.research-infrastructures.eu changing its hostname. It is not going to be an hypervisor.

The server should be ready. I installed the software in a more proper place, under `/opt/agisoft/photoscan_lm/agisoft... Andrea Dell'Amico

06:59 PM D4Science Infrastructure Task #11395: Reinstall dlib8x.dom0.research-infrastructures.eu changing its hostname. It is not going to be an hypervisor.

Please wait, the machine has not been completely set up yet. I'll run the same playbook, only installing the service ... Andrea Dell'Amico

02:51 PM D4Science Infrastructure Task #11409: Upgrade mapping-d-parthenos.d4science.org to the latest smartgears distribution

If you can, it's OK by me. That distribution is quite old I see, but it runs against Java 8.
Andrea Dell'Amico

01:46 PM D4Science Infrastructure Task #11409: Upgrade mapping-d-parthenos.d4science.org to the latest smartgears distribution

As I suspected, smartgears was manually installed and never touched after that. I can try and merge the smartgears pl... Andrea Dell'Amico

11:59 AM D4Science Infrastructure Support #11423: Selecting the OS

@bartj@hum.ku.dk the D4Science inffrastructure is based on Ubuntu 14.04, there are plans to upgrade but not before th... Andrea Dell'Amico

Mar 12, 2018

05:30 PM D4Science Infrastructure Task #11420: DataMiner - Install new sofware to support the new algorithm Rubrica

What's the meaning of *at the java level*? Do we have to install it as a tomcat library? as a tomcat webapp? Is it a ... Andrea Dell'Amico

02:27 PM D4Science Infrastructure Task #11418 (Closed): CkanConnectors: whn-manager is not listening on http

All the CKAN nodes are now up to date. Andrea Dell'Amico

12:33 PM D4Science Infrastructure Task #11418: CkanConnectors: whn-manager is not listening on http

You can do it running
~~~
./run.sh ckan.yml -i inventory/hosts.production -t nginx -l ckan_web
~~~ Andrea Dell'Amico

12:32 PM D4Science Infrastructure Task #11418 (In Progress): CkanConnectors: whn-manager is not listening on http

The nginx template was fixed time ago but not installed everywhere. I just installed it on ckan-d4s.d4science.org, ca... Andrea Dell'Amico

11:46 AM D4Science Infrastructure Task #2106 (Closed): Install Joomla for the new PUMA portal

Andrea Dell'Amico

Mar 08, 2018

06:11 PM D4Science Infrastructure Task #11409: Upgrade mapping-d-parthenos.d4science.org to the latest smartgears distribution

Roberto Cirillo wrote:
> This node is configured as dnet node. I guess we haven't a dev instance for this service.
... Andrea Dell'Amico

Mar 07, 2018

06:55 PM D4Science Infrastructure Task #11396 (Closed): Move the VM hosted on the Ganeti cluster to the oVirt cluster

When the oVirt cluster will be working, and tested. The services hosted on the ganeti cluster are:
* internal smtp... Andrea Dell'Amico

06:51 PM D4Science Infrastructure Task #11395 (Closed): Reinstall dlib8x.dom0.research-infrastructures.eu changing its hostname. It is not going to be an hypervisor.

As per parent task, it is going to host the photoscan license server software.
The system OS can be Ubuntu 16.04 or... Andrea Dell'Amico

06:33 PM D4Science Infrastructure Task #11394 (Closed): Dismiss certs.research-infrastructures.eu

When the activity listed in #4243 will be complete, that VM will be of no use. Andrea Dell'Amico

06:30 PM D4Science Infrastructure Task #4243: Migrate SSL certificate from GARR/TERENA to Let's Encrypt

From that list the only missing host seems to be svn.research-infrastructures.eu. Another reason to move the service ... Andrea Dell'Amico

06:25 PM D4Science Infrastructure Support #11391: Increment Thredds-dev allocated storage

@tommaso.piccioli@isti.cnr.it can you work on this? Andrea Dell'Amico

04:28 PM D4Science Infrastructure Task #11368 (Feedback): Recolecta VM

Andrea Dell'Amico

04:27 PM D4Science Infrastructure Task #11368 (In Progress): Recolecta VM

The old index is still phisically on the system, but it should be imcompatible with the new solr instance.
solr 5.... Andrea Dell'Amico

12:00 PM D4Science Infrastructure Task #11368: Recolecta VM

Can I proceed? Can I destroy the old index? Andrea Dell'Amico

03:59 PM D4Science Infrastructure Task #11055 (Closed): Do not install ganglia anymore

Removed the configurations from the hardware hosts and fixed the nagios configurations so that they will not check th... Andrea Dell'Amico

03:55 PM D4Science Infrastructure Task #11369: VMs with docker do not start the firewall correctly at boot time

A couple of possible solutions:
* https://blog.daknob.net/debian-firewall-docker/
* https://github.com/moby/moby... Andrea Dell'Amico

03:24 PM D4Science Infrastructure Task #11369: VMs with docker do not start the firewall correctly at boot time

The existing VMs were fixed as soon as the problem arised. I just started studying a permanent solution. Andrea Dell'Amico

03:07 PM D4Science Infrastructure Task #2106 (Feedback): Install Joomla for the new PUMA portal

Also reinstalled joomla and the mongo and solr php plugins. Andrea Dell'Amico

12:19 PM D4Science Infrastructure Task #2106: Install Joomla for the new PUMA portal

I'm going to install mysql and the php mysql driver, there's no need to touch the joomla instance. Andrea Dell'Amico

Mar 06, 2018

12:24 PM D4Science Infrastructure Incident #11365 (Closed): Workspace is not working!

I see that @tommaso.piccioli@isti.cnr.it restarted the DB server. Andrea Dell'Amico

Mar 05, 2018

05:30 PM D4Science Infrastructure Task #10264: Add /data as separate file system on workspace-repository-prod.d4science.org

OK. @tommaso.piccioli@isti.cnr.it when you want :). No backup is needed, the configuration is completetly automated. Andrea Dell'Amico

04:32 PM D4Science Infrastructure Task #10264: Add /data as separate file system on workspace-repository-prod.d4science.org

This one should become *destroy workspace-repository-prod.d4science.org, create a new VM when the service will be rea... Andrea Dell'Amico

04:40 PM D4Science Infrastructure Task #4852 (Rejected): Split the ganglia and nagios servers

ganglia is dead, working on prometheus. Andrea Dell'Amico

04:38 PM D4Science Infrastructure Task #11348 (Rejected): Remove the elasticsearch instance from wds-dli.dnet.d4science.org

That elasticsearch instance is needed. Andrea Dell'Amico

03:40 PM D4Science Infrastructure Task #11313 (Closed): Activate a LDAP slave at the GARR facility

Done. The new ldap server now is used to authenticate all the rstudio GARR instances.
Andrea Dell'Amico