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From Nov 13, 2018 to Dec 12, 2018

Dec 12, 2018

05:38 PM Task #12861: Purge old records of the public GRSF Catalogue
Thanks, sorry but I think there is a misunderstanding, that list is for GRSF records and those groups should be there... Aureliano Gentile
05:26 PM Task #12861: Purge old records of the public GRSF Catalogue
@aureliano.gentile@fao.org about the point 1.
I'm going to remove the legacy groups from GRSF Catalogue (they will b...
Francesco Mangiacrapa
04:00 PM Bug #13026: Approved records loose some information and data
We will fix the issue asap. @luca.frosini@isti.cnr.it is working to fix it Francesco Mangiacrapa
12:37 PM Bug #13026 (In Progress): Approved records loose some information and data
The data published in the two VREs are exactly the same. You will see that Catches for example are included (under St... Yannis Marketakis
10:33 AM Bug #13026 (Closed): Approved records loose some information and data
In example
Sebastes mentella East Greenland (Subarea 27.14) Iceland Grounds (Division 27.5.a)
by comparing the r...
Aureliano Gentile

Dec 10, 2018

12:11 PM Task #12861: Purge old records of the public GRSF Catalogue
1: indeed if no legacy records are published it make sense get rid of that group (but to be kept in the GRSF Admin VR... Aureliano Gentile
11:43 AM Task #12861: Purge old records of the public GRSF Catalogue
Yannis Marketakis wrote:
> The publishing of the records was completed a couple of hours after updating the ticket. ...
Francesco Mangiacrapa
08:24 AM Task #12861: Purge old records of the public GRSF Catalogue
The publishing of the records was completed a couple of hours after updating the ticket.
However, I still see that ...
Yannis Marketakis

Dec 07, 2018

09:40 PM Task #12861: Purge old records of the public GRSF Catalogue
thanks, no one was imaging the need to purge the grsf vre again, or at least nobody warned me. Anyway thanks a lot an... Aureliano Gentile
04:03 PM Task #12861: Purge old records of the public GRSF Catalogue
Thanks Luca.
I am re-publishing right away
Yannis Marketakis
03:21 PM Task #12861: Purge old records of the public GRSF Catalogue
We cleaned the catalogue.
@marketak@ics.forth.gr can you republish the records? Thanks a lot
Luca Frosini
12:46 PM Task #12861: Purge old records of the public GRSF Catalogue
This task is critical since Aureliano already sent the invitation to the GRSF colleagues for reviewing the content of... Pasquale Pagano
09:01 AM Task #12861: Purge old records of the public GRSF Catalogue
As soon as there's no other way we will republish them Yannis Marketakis
05:01 PM Bug #13008 (Closed): GRSF Item URLs are not working properly
The Item URLs published for the GRSF Items (at https://bluebridge.d4science.org/group/grsf/data-catalogue?path=/datas... Francesco Mangiacrapa

Dec 06, 2018

06:31 PM Task #12861 (In Progress): Purge old records of the public GRSF Catalogue
@marketak@ics.forth.gr, @aureliano.gentile@fao.org
I just copied via script to the GRSF Catalogue (see at https:/...
Francesco Mangiacrapa
11:16 AM Task #12861 (Closed): Purge old records of the public GRSF Catalogue
I created the ticket #12994 for the Group issue Luca Frosini
04:10 PM Bug #12994 (Rejected): Group are not created in GRSF VRE
The GRSF service automatically associates a group to a record using some defined fields. If the group does not exist ... Luca Frosini
12:46 PM Bug #12994: Group are not created in GRSF VRE
~~~
2018-12-03 10:01:16,677 [Thread-63126] ERROR DataCatalogueImpl: Unable to check if this role was already set, pl...
Luca Frosini
12:46 PM Bug #12994: Group are not created in GRSF VRE
@francesco.mangiacrapa@isti.cnr.it can you please check it? Luca Frosini
12:46 PM Bug #12994: Group are not created in GRSF VRE
It seems an issue related to privileges of grsf.publisher with such catalogue:
~~~
2018-12-03 10:01:16,677 [Threa...
Luca Frosini
11:15 AM Bug #12994 (Rejected): Group are not created in GRSF VRE
Luca Frosini

Dec 05, 2018

04:52 PM Task #12974 (Closed): Update intro text in the GRSF VRE
Francesco Mangiacrapa
04:49 PM Task #12974: Update intro text in the GRSF VRE
More than perfect, thanks!
We are now about to inform the GRSF team colleagues to start the review of the pilot rele...
Aureliano Gentile
04:44 PM Task #12974: Update intro text in the GRSF VRE
Aureliano Gentile wrote:
> Thanks a lot, please see a couple of text modifications in the attached screenshot, if po...
Francesco Mangiacrapa
04:04 PM Task #12974: Update intro text in the GRSF VRE
Thanks a lot, please see a couple of text modifications in the attached screenshot, if possible. Aureliano Gentile
10:30 AM Task #12974 (Feedback): Update intro text in the GRSF VRE
Done. @aureliano.gentile@fao.org, you can check it at https://i-marine.d4science.org/group/grsf/data-catalogue
I hav...
Francesco Mangiacrapa
10:14 AM Task #12974 (In Progress): Update intro text in the GRSF VRE
Francesco Mangiacrapa
10:05 AM Task #12861: Purge old records of the public GRSF Catalogue
Yannis Marketakis wrote:
> @francesco.mangiacrapa@isti.cnr.it the records published in GRSF VRE are replicas of GRSF...
Francesco Mangiacrapa
08:00 AM Task #12861: Purge old records of the public GRSF Catalogue
@francesco.mangiacrapa@isti.cnr.it the records published in GRSF VRE are replicas of GRSF records found in GRSF Admin... Yannis Marketakis

Dec 04, 2018

05:38 PM Task #12861: Purge old records of the public GRSF Catalogue
Yannis Marketakis wrote:
> @aureliano.gentile@fao.org grouping is a facility offered by the catalogue. Such informat...
Francesco Mangiacrapa
05:06 PM Task #12861: Purge old records of the public GRSF Catalogue
thanks, @francesco.mangiacrapa@isti.cnr.it you have your answer from FORTH. Aureliano Gentile
03:52 PM Task #12861: Purge old records of the public GRSF Catalogue
@aureliano.gentile@fao.org grouping is a facility offered by the catalogue. Such information is not stored in the GRS... Yannis Marketakis
12:59 PM Task #12861: Purge old records of the public GRSF Catalogue
As per interaction with @francesco.mangiacrapa@isti.cnr.it I would need assistance from:
@marketak@ics.forth.gr fo...
Aureliano Gentile
12:40 PM Task #12974: Update intro text in the GRSF VRE
The URL of the page is the following https://i-marine.d4science.org/group/grsf/data-catalogue Aureliano Gentile
12:16 PM Task #12974 (Closed): Update intro text in the GRSF VRE
Following the bulk approval of GRSF records (pilot release), please update the introductory text as follows. Once don... Aureliano Gentile

Dec 03, 2018

04:41 PM Task #12861 (In Progress): Purge old records of the public GRSF Catalogue
New records have been published in the GRSF VRE, the entry page is not showing "Browse by Organisations" and "Browse ... Aureliano Gentile
02:36 PM Task #12858 (Closed): Purge old records from public GRSF VRE
Yannis Marketakis
02:35 PM Task #12857 (Closed): Bulk approval of (valid) GRSF records
We have already approved and published the records in the public GRSF VRE.
You can see the results in https://servic...
Yannis Marketakis
01:03 PM Task #12857: Bulk approval of (valid) GRSF records
Dear FORTH colleagues, do you envisage a new data harvest before approving? At least from FIRMS where in the meantime... Aureliano Gentile

Nov 30, 2018

01:12 PM Task #12857 (In Progress): Bulk approval of (valid) GRSF records
Yannis Marketakis

Nov 29, 2018

09:26 AM Bug #12906 (Closed): Update "problematic" records in the GRSF admin catalog
The following records have been updated:
* 701 legacy Stock records (from FIRMS)
* 2928 GRSF Stock records
Yannis Marketakis

Nov 26, 2018

01:01 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
"Sharks - Global" (http://data.d4science.org/ctlg/GRSF_Admin/41cdffcb-fff2-3aaa-ab38-1d23a2b651c4) is marine resource... Aureliano Gentile
12:19 PM Bug #12906 (In Progress): Update "problematic" records in the GRSF admin catalog
I would prefer an automatic way of identifying them (so that we are sure that future updates are consistent). I under... Yannis Marketakis

Nov 23, 2018

05:29 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
I updated the list of FIRMS, please find attached excel file.
The presence of Text in the "State and trend of Marine...
Aureliano Gentile

Nov 22, 2018

02:25 PM Feature #12278: Complete Citation development
I just noticed this citation and it says "FAO 2018" https://bluebridge.d4science.org/group/grsf_admin/data-catalogue?... Aureliano Gentile
02:23 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
Sure. Attached you will find the corresponding titles Yannis Marketakis
01:55 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
Thanks, I'll review. Actually with the title next to the URL it would be much easier for me to spot which are assessm... Aureliano Gentile
12:29 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
Attached you will find the list of stocks records that have state and trend info and do not have time-series info.
...
Yannis Marketakis
11:44 AM Bug #12906: Update "problematic" records in the GRSF admin catalog
One clarification: if the record has status trend indicators then it is an Assessment Unit by default. These status i... Aureliano Gentile
11:25 AM Bug #12906: Update "problematic" records in the GRSF admin catalog
Thank you for the answer. So I will update the type of the record. Would you like to do it for all the records that f... Yannis Marketakis
11:20 AM Bug #12906: Update "problematic" records in the GRSF admin catalog
Thanks, I confirm the overall requirement https://support.d4science.org/projects/stocksandfisherieskb/wiki/GRSF_datab... Aureliano Gentile
11:05 AM Bug #12906: Update "problematic" records in the GRSF admin catalog
@aureliano.gentile@fao.org As regards the record http://data.d4science.org/ctlg/GRSF_Admin/ee1d7967-6da2-3d8a-88d5-c... Yannis Marketakis
11:06 AM Task #12856: Verification of GRSF merging process
Thank you @emmanuel.blondel1@gmail.com .
I will invoke this in the merging process and let you know if we face any p...
Yannis Marketakis
10:59 AM Bug #12419 (Closed): Fishing Pressure time series is missing in several records
Yannis Marketakis
10:54 AM Bug #12419: Fishing Pressure time series is missing in several records
The missing time-series have been added into GRSF KB (aprox. 400 were missing).
As a proof of concept we have update...
Yannis Marketakis

Nov 21, 2018

06:39 PM Task #12856: Verification of GRSF merging process
Dear @marketak@ics.forth.gr for spatial, see https://support.d4science.org/projects/stocksandfisherieskb/wiki/18-11-1... Emmanuel Blondel
11:50 AM Bug #12420 (Closed): Narrative text is messed up when in multiple xml nodes
Yannis Marketakis
11:38 AM Bug #12420: Narrative text is messed up when in multiple xml nodes
Thanks for your reply @francesco.mangiacrapa@isti.cnr.it .
So, I will replace ';' with whitespace.
Yannis Marketakis

Nov 20, 2018

04:47 PM Bug #12420: Narrative text is messed up when in multiple xml nodes
It is (wrongly) correct, I would say ;-)
Anyway, so the best would be to add simply a space.
With thanks
Aureliano Gentile
04:44 PM Bug #12420: Narrative text is messed up when in multiple xml nodes
Yannis Marketakis wrote:
> I think that we cannot use HTML formatting tags (i.e. `<br>, <i>, <b>`, etc.) for the pro...
Francesco Mangiacrapa
03:44 PM Bug #12420 (Feedback): Narrative text is messed up when in multiple xml nodes
I think that we cannot use HTML formatting tags (i.e. `<br>, <i>, <b>`, etc.) for the properties of the catalog. @fra... Yannis Marketakis
03:18 PM Bug #12420: Narrative text is messed up when in multiple xml nodes
Thanks a lot!
Actually multiple text nodes are generated by the FIRMS Word-to-XML converter tool for handling differ...
Aureliano Gentile
01:58 PM Bug #12420 (Closed): Narrative text is messed up when in multiple xml nodes
The issue has been resolved. The narratives for the fields scientific_advice and state_and_trend are concatenated whi... Yannis Marketakis
12:34 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
Practically, if we update a record it will have the same effect with republishing it.
As regards your comment about...
Yannis Marketakis
12:00 PM Bug #12906: Update "problematic" records in the GRSF admin catalog
It might be good to republish the entire data set to avoid any undetected issues.
In example today I was preparing a...
Aureliano Gentile
09:32 AM Bug #12906 (Closed): Update "problematic" records in the GRSF admin catalog
Because of the related issues, there are several records that have problems. Once all these problems are resolved, we... Yannis Marketakis
09:44 AM Bug #12261 (Closed): Multiple time series in GRSF from RAM data
Yannis Marketakis
09:44 AM Bug #12261: Multiple time series in GRSF from RAM data
The issue has been resolved.
As a proof of concept, I ve updated one GRSF record (http://data.d4science.org/ctlg/...
Yannis Marketakis
09:34 AM Bug #12424 (Closed): Stock status FAO categories not properly handled
The issue has been resolved.
As a proof of concept I've updated the records in the catalog (http://data.d4science.o...
Yannis Marketakis

Nov 19, 2018

03:58 PM Bug #12261 (Feedback): Multiple time series in GRSF from RAM data
The publisher client has been updated.
Whenever there are time-series coming from RAM data source, then instead of t...
Yannis Marketakis
03:49 PM Bug #12424 (In Progress): Stock status FAO categories not properly handled
OK. Then I suggest to keep the controlled vocabulary for now and we'll see in the future if we want to relax this con... Yannis Marketakis
03:45 PM Bug #12424: Stock status FAO categories not properly handled
The FAO state of a stock is based on a controlled vocabulary, which however it changes across time. The above new ite... Aureliano Gentile
03:35 PM Bug #12424: Stock status FAO categories not properly handled
Aureliano Gentile wrote:
> I thought the categories were transparent to the process and received blindly whatever is...
Yannis Marketakis
03:21 PM Bug #12424: Stock status FAO categories not properly handled
I thought the categories were transparent to the process and received blindly whatever is in the source databases (le... Aureliano Gentile
02:56 PM Bug #12424 (Feedback): Stock status FAO categories not properly handled
This issue appeared because there were some of the identified categories missing (not fully exploited in this case). ... Yannis Marketakis

Nov 16, 2018

03:49 PM Task #12856: Verification of GRSF merging process
# Merging stocks
## Pre-requisites
* species in the records under merging should be the same. If not the same,...
Yannis Marketakis
01:40 PM Bug #12420: Narrative text is messed up when in multiple xml nodes
This issue happens because the sequence of the narrative texts was not preserved (it was not defined to do so).
FORT...
Yannis Marketakis
01:34 PM Bug #12419: Fishing Pressure time series is missing in several records
Clarification:
The first record has two values for Abundance Level, and one for Fishing Pressure.
These values we...
Yannis Marketakis
01:26 PM Bug #12424 (In Progress): Stock status FAO categories not properly handled
The value in the GRSF KB is correct, so this is an issue appeared during the publishing. Yannis Marketakis
01:21 PM Bug #12261 (In Progress): Multiple time series in GRSF from RAM data
Today we have discussed with FAO, about how to proceed with this issue.
We ended up that the best way to resolve th...
Yannis Marketakis

Nov 13, 2018

05:01 PM Task #12861 (Closed): Purge old records of the public GRSF Catalogue
done https://ckan-grsf.d4science.org/group Francesco Mangiacrapa
04:36 PM Task #12861: Purge old records of the public GRSF Catalogue
Yes please do.
Thanks
Yannis Marketakis
03:02 PM Task #12861: Purge old records of the public GRSF Catalogue
Yannis Marketakis wrote:
> If we remove them they are will be re-created when we publish data. Is that correct?
Y...
Francesco Mangiacrapa
11:41 AM Task #12861: Purge old records of the public GRSF Catalogue
If we remove them they are will be re-created when we publish data. Is that correct? Yannis Marketakis
 

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