D4Science Infrastructure

Jan 28, 2019

07:33 PM Task #13228 (Closed): Geoserver: increase RAM memory

added 1.2 GB of RAM and 1 GB to the tomcat java heap. Tommaso Piccioli

05:35 PM Task #13228 (Closed): Geoserver: increase RAM memory

OutOfMemory found on geoserver.d4science.org.
This is not the first time. We should increase the RAM amount. Now we ... Roberto Cirillo

04:43 PM Task #13193 (Rejected): Dismiss SmartArea VO and related VREs (SmartCamera etc.)

This ticket is a duplicate of #13158 Roberto Cirillo

04:12 PM Incident #13215 (Closed): Some DataMiners not working in PerformFish-KPIs scope

After the clean state I've seen the same problem on the log:
~~~
2019-01-28 14:43:05,955 [pool-9-thread-11] INFO ... Roberto Cirillo

11:50 AM Incident #13215: Some DataMiners not working in PerformFish-KPIs scope

The problem seems to be related to the dataminer service state on some instances deployed at garr.
~~~
2019-01... Roberto Cirillo

11:10 AM Incident #13215 (In Progress): Some DataMiners not working in PerformFish-KPIs scope

I'm going to check the logs. Roberto Cirillo

11:06 AM Upgrade #13225 (Completed): D4Science Root VO upgrade to gCube 4.13.1

Roberto Cirillo

11:03 AM Task #13182 (Closed): StorageHub: provision the gcube-app.xml file

Roberto Cirillo

11:03 AM Task #13130 (Closed): DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo

11:00 AM Upgrade #13224 (Completed): D4Science Infrastructure Upgrade to gCube 4.13.1

Roberto Cirillo

Jan 24, 2019

03:29 PM Incident #13215: Some DataMiners not working in PerformFish-KPIs scope

From the errors that I see into the `ghn.log` file, it could be a registry problem. @roberto.cirillo@isti.cnr.it @luc... Andrea Dell'Amico

12:08 PM Incident #13215: Some DataMiners not working in PerformFish-KPIs scope

From the portlet on the tomcat log I can see the following:
2019-01-24 10:56:37,186 WARN performfish.SubmittedF... Massimiliano Assante

12:00 PM Incident #13215 (Closed): Some DataMiners not working in PerformFish-KPIs scope

Some DataMiner instances in the dataminer.garr cluster are not working in the FARM/PerformFISH-KPIs VRE. They do not ... Gianpaolo Coro

11:07 AM Support #13209 (Closed): Need of a new dir 'faotunaatlas' on static-web.d4science.org

Andrea Dell'Amico

Jan 23, 2019

08:28 PM Support #13209: Need of a new dir 'faotunaatlas' on static-web.d4science.org

Many thanks @andrea.dellamico@isti.cnr.it for your very prompt support, very much appreciated! Emmanuel Blondel

06:23 PM Support #13209 (Feedback): Need of a new dir 'faotunaatlas' on static-web.d4science.org

Done. You can access with your ssh key, the URL is https://tunaatlas.d4science.org/faotunaatlas Andrea Dell'Amico

05:50 PM Support #13209 (In Progress): Need of a new dir 'faotunaatlas' on static-web.d4science.org

Yes, it's doable. I'm going to configure the directory and the load balancer. Andrea Dell'Amico

11:58 AM Support #13209 (Closed): Need of a new dir 'faotunaatlas' on static-web.d4science.org

Hello, by chance would it be possible (if quick, easy and possible to do with existing hardware resources) to have a ... Emmanuel Blondel

06:32 PM VM Creation #13112 (Closed): perform-service development instance

Andrea Dell'Amico

06:30 PM VM Creation #13149 (Closed): perform-service production instance

Andrea Dell'Amico

Jan 21, 2019

05:14 PM Task #12799 (Closed): Memory problems on ckan-d4s1.d4science.org

closing Andrea Dell'Amico

04:54 PM Incident #13162 (Closed): Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

The error was due to a very big *eduPersonEntitlement* field. To make the account work, on @nikosev@admin.grnet.gr su... Andrea Dell'Amico

03:55 PM Incident #13192 (Closed): VRE Modeler service on ParthenosVO not responding

Yes, that is the correct one. I have restarted it, now it appears on the infrastructure monitor. Lucio Lelii

03:37 PM Incident #13192: VRE Modeler service on ParthenosVO not responding

The correct host could be node44.p.d4science.research-infrastructures.eu, see #9092. @lucio.lelii@isti.cnr.it can you... Andrea Dell'Amico

02:49 PM Incident #13192: VRE Modeler service on ParthenosVO not responding

Sorry, I got confused. I'll try to restart it. Andrea Dell'Amico

02:22 PM Incident #13192: VRE Modeler service on ParthenosVO not responding

No Andrea, is not that 3M service. Is the VRE Modeler service, which it is required when creating new VREs. The UI to... Massimiliano Assante

01:08 PM Incident #13192: VRE Modeler service on ParthenosVO not responding

Uh? what URL did you try? it's working here: https://services.d4science.org/group/parthenos/x3ml-mapping-tool/ Andrea Dell'Amico

12:53 PM Incident #13192 (Closed): VRE Modeler service on ParthenosVO not responding

Can someone help? I think it may just need to be restarted. @lucio.lelii@isti.cnr.it since Roberto is not at work can... Massimiliano Assante

02:46 PM Task #13193 (Rejected): Dismiss SmartArea VO and related VREs (SmartCamera etc.)

SmartArea VO and related VREs (SmartCamera etc.) can be dismissed from the Infrastructure. Massimiliano Assante

Jan 18, 2019

06:05 PM Task #13182: StorageHub: provision the gcube-app.xml file

The change works properly: now the port field is optional. Roberto Cirillo

03:49 PM Task #13182: StorageHub: provision the gcube-app.xml file

The storagehub instance deployed in preproduction was going on http and port 80. In this case the proxy tag wasn't ne... Roberto Cirillo

03:26 PM Task #13182: StorageHub: provision the gcube-app.xml file

One consideration: OK to live with whn-manager over http, but the storage hub service should go over https.
Also, ca... Andrea Dell'Amico

03:20 PM Task #13182 (Feedback): StorageHub: provision the gcube-app.xml file

The storagehub service has been upgraded and the gcube-app.xml has been provisioned. Now the gcube-app.xml deployed i... Roberto Cirillo

11:57 AM Task #13182 (In Progress): StorageHub: provision the gcube-app.xml file

Roberto Cirillo

10:36 AM Task #13182: StorageHub: provision the gcube-app.xml file

Here is an example of the gcube-app.xml with the proxy tag:
~~~
<application mode='online'>
<name>StorageHub</... Lucio Lelii

10:28 AM Task #13182 (Feedback): StorageHub: provision the gcube-app.xml file

Roberto Cirillo

10:28 AM Task #13182 (In Progress): StorageHub: provision the gcube-app.xml file

Please @lucio.lelii@isti.cnr.it could you provide an example of StorageHub gcube-app.xml file with the new fields? Roberto Cirillo

10:26 AM Task #13182 (Closed): StorageHub: provision the gcube-app.xml file

In order to manage the proxy address of the storagehub webapp, it's needed to provision the gcube-app.xml file starti... Roberto Cirillo

02:19 PM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

Ok it's not a big deal for now.
Giancarlo Panichi

12:55 PM Task #13130: DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo wrote:
> This is not an explanation and I didn't realize that. IMHO this is not a clean behavior and... Andrea Dell'Amico

12:41 PM Task #13130 (Feedback): DataMiner - Update service on preprod to latest release 4.13.1

This is not an explanation and I didn't realize that. IMHO this is not a clean behavior and should be avoided.
@and... Roberto Cirillo

12:07 PM Task #13130: DataMiner - Update service on preprod to latest release 4.13.1

Change that the container does not reload the algorithms correctly. Giancarlo Panichi

11:54 AM Task #13130: DataMiner - Update service on preprod to latest release 4.13.1

Giancarlo Panichi wrote:
> @roberto.cirillo@isti.cnr.it , now the service has the right libraries, the Etics build i... Roberto Cirillo

11:34 AM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

@roberto.cirillo@isti.cnr.it , now the service has the right libraries, the Etics build is correct.
As for the file ... Giancarlo Panichi

11:21 AM Task #13130 (Feedback): DataMiner - Update service on preprod to latest release 4.13.1

Done. Roberto Cirillo

11:08 AM Task #13130: DataMiner - Update service on preprod to latest release 4.13.1

I'm going to reinstall the dataminer in preproduction Roberto Cirillo

11:04 AM Task #13130: DataMiner - Update service on preprod to latest release 4.13.1

Giancarlo Panichi wrote:
> @roberto.cirillo@isti.cnr.it in pre-production there is the DataMiner service that I had ... Roberto Cirillo

10:50 AM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

@roberto.cirillo@isti.cnr.it in pre-production there is the DataMiner service that I had fixed yesterday, it should s... Giancarlo Panichi

10:35 AM Task #13130 (Closed): DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo

10:34 AM Task #13130: DataMiner - Update service on preprod to latest release 4.13.1

After a new deploy it works now. Roberto Cirillo

10:52 AM Task #13183 (Closed): Remove the services running on SmartArea VO

The following list contains the services currently running on SmartArea VO. The SmartArea VO scopes should be removed... Roberto Cirillo

Jan 17, 2019

05:43 PM Incident #13162: Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

> About your last video, since it is the first time that you've used your EGI SSO account to login, you are not mem... Massimiliano Assante

03:59 PM Incident #13162: Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

I've asked other EGI colleagues to login with their SSO accounts. All of them have the same issue, even if they have ... Giuseppe La Rocca

02:47 PM Incident #13162 (In Progress): Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

Giuseppe I think there might be issues with EGI SSO only. At least in my case when I try to access with the EOSC AAI ... Massimiliano Assante

01:20 PM Incident #13162: Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

Hi,
If I access directly with Google IdP, it works. The server replies with a Bad Request message when I try to ac... Giuseppe La Rocca

12:42 PM Incident #13162: Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

Yes, we need details because I cannot reproduce it. I just tried logging in using Google as the authentication provid... Andrea Dell'Amico

12:27 PM Incident #13162 (Closed): Bad Request message from the server if I try to access the VRE using the EOSC AAI service.

The issue was reported from @giuseppe.larocca@egi.eu
I kindly ask Giuseppe to provide more details about the issu... Massimiliano Assante

01:11 PM Support #13161 (Closed): increase the number of backups kept for the WS database in production

This was the retention policy for the DB dump at day T:
at least daily db dump of days T-1 till T-N with N in the ... Tommaso Piccioli

12:22 PM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

@roberto.cirillo@isti.cnr.it there is a problem of conflicting versions on jersey libraries.
We made a fix and re-... Giancarlo Panichi

10:13 AM Task #13130 (Feedback): DataMiner - Update service on preprod to latest release 4.13.1

please @g.panichi@isti.cnr.it let me know if it works properly now Roberto Cirillo

10:12 AM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo

10:11 AM Task #13130 (Feedback): DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo

10:08 AM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

New build available. I'm going to upgrade the service instances in preproduction Roberto Cirillo

Jan 16, 2019

07:40 PM Support #13161 (Closed): increase the number of backups kept for the WS database in production

now we keep only 10 backups of the WS database, we need to increase it in case we realize that there is an issue 10 d... Lucio Lelii

03:04 PM Task #13158 (Closed): Dismiss SmartArea VO

The SmartArea VO will be disposed.
It's needed to remove the SmartArea VO scope (/d4science.research-infrastructures... Roberto Cirillo

10:47 AM Incident #13096 (Closed): Share Updates mentioning in some VRE may not work

Closing the incident for the moment, hoping that the patch fixes the issue. Massimiliano Assante

10:43 AM Upgrade #13153 (Completed): Infra-gateways first update to gCube 4.13.1

Massimiliano Assante

10:10 AM Upgrade #13153 (In Progress): Infra-gateways first update to gCube 4.13.1

Massimiliano Assante

10:06 AM Upgrade #13153 (Planned): Infra-gateways first update to gCube 4.13.1

Massimiliano Assante

10:05 AM Upgrade #13153 (Completed): Infra-gateways first update to gCube 4.13.1

This update contains the following portlets:
* VREApp-Integration-portlet.1-0-0-SNAPSHOT
* org.gcube.portlets-use... Massimiliano Assante

10:14 AM Task #13130 (Paused): DataMiner - Update service on preprod to latest release 4.13.1

I'm waiting a new build Roberto Cirillo

Jan 15, 2019

06:03 PM VM Creation #13149: perform-service production instance

Thanks for the hint, it's probably the right cause. I'm gonna fix it now. Fabio Sinibaldi

05:40 PM VM Creation #13149: perform-service production instance

I see that there's no gcube-app.xml file inside WEB-INF. Andrea Dell'Amico

05:38 PM VM Creation #13149: perform-service production instance

There's a problem with the container. The error below is from the production instance, but I expect an identical one... Andrea Dell'Amico

01:24 PM VM Creation #13149 (In Progress): perform-service production instance

new VM perform.d4science.org ready to be provided Tommaso Piccioli

11:46 AM VM Creation #13149: perform-service production instance

The production DB published as Service Endpoint
Category = Database
Name = PF_DB
is currently pf_kpi_apps hos... Fabio Sinibaldi

11:24 AM VM Creation #13149: perform-service production instance

Is there a production DB or is it meant to connect to the dev one? Andrea Dell'Amico

11:16 AM VM Creation #13149 (Closed): perform-service production instance

A new VM is needed in order to test the new service 'perform-service'.
Such service needs to connect to the VRE's ... Fabio Sinibaldi

06:02 PM VM Creation #13112: perform-service development instance

Confirm, same error. You have access to both the servers so you can reinstall when ready.
Andrea Dell'Amico

06:01 PM VM Creation #13112: perform-service development instance

Most probably yes. Service's development / testing is still ongoing, so I'm going to run provision frequently in orde... Fabio Sinibaldi

05:42 PM VM Creation #13112: perform-service development instance

provisioning is ongoing, but I expect an error identical to the one present in production. See #13149#note-5
Andrea Dell'Amico

11:06 AM VM Creation #13112: perform-service development instance

Yes, Maven coordinates are :
<groupId>org.gcube.application</groupId>
<artifactId>perform-service</artifactId>
... Fabio Sinibaldi

10:58 AM VM Creation #13112: perform-service development instance

@fabio.sinibaldi@isti.cnr.it do you already have the maven coordinates to the `perform-service` artifact?
Andrea Dell'Amico

05:52 PM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

Hi @roberto.cirillo@isti.cnr.it , the service does not work there are dependencies that have not been correctly inher... Giancarlo Panichi

04:47 PM Task #13130 (Feedback): DataMiner - Update service on preprod to latest release 4.13.1

the dataminer instances have been upgraded. Roberto Cirillo

04:38 PM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo

11:08 AM Task #13148 (New): Dismiss old VO /gcube/preprod

The old VO /gcube/preprod should be dismissed when the new VO /pred4s/preprod become fully operational.
In particula... Roberto Cirillo

Jan 14, 2019

06:09 PM VM Creation #13112 (In Progress): perform-service development instance

new VM perform.dev.d4science.org ready to be provisioned Tommaso Piccioli

03:32 PM Task #13134 (Closed): infrastructure-monitor: I'm not able to create a ServiceEndpoint

Now it works properly. Roberto Cirillo

11:15 AM Task #13134 (Closed): infrastructure-monitor: I'm not able to create a ServiceEndpoint

In order to test the correct encryption/decryption with the new preproduction key, I need to create a new ServiceEndp... Roberto Cirillo

Jan 11, 2019

06:58 PM Task #10270 (Closed): Configure the xen hypervisor to let the guests talk to the storage network

After reading the documentation again, in particular http://docs.ceph.com/docs/master/rados/configuration/network-con... Andrea Dell'Amico

05:56 PM Task #12799: Memory problems on ckan-d4s1.d4science.org

Andrea Dell'Amico wrote:
> @tommaso.piccioli@isti.cnr.it @francesco.mangiacrapa@isti.cnr.it was the RAM amount incre... Andrea Dell'Amico

03:00 PM Task #13130 (Paused): DataMiner - Update service on preprod to latest release 4.13.1

Roberto Cirillo

03:00 PM Task #13130 (In Progress): DataMiner - Update service on preprod to latest release 4.13.1

The dataminer service is failing on gCube 4.13.1.
The service will be upgraded when the new version is available in... Roberto Cirillo

02:41 PM Task #13130 (Closed): DataMiner - Update service on preprod to latest release 4.13.1

In order to work with DataMiner in Preprod it is necessary to update the service to the latest version gCube 4.13.1
... Giancarlo Panichi

12:23 PM Task #13050 (Closed): Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

Tried on both ckan-ecoevo and ckan-sobigdata, both the version with and without the template changes. They do not bre... Andrea Dell'Amico

Jan 10, 2019

08:21 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

OK. The playbook is ready, let's coordinate us to install the patch when a restart of the server is not a problem. Andrea Dell'Amico

04:07 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

Andrea Dell'Amico wrote:
> New patch that includes the changes to the template snippets.
Hi Andrea, thanks for yo... Francesco Mangiacrapa

12:46 PM VRE #12946 (Removed): D4Research/FAIR_DM VRE Removal

Massimiliano Assante

Jan 09, 2019

05:59 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

New patch that includes the changes to the template snippets.
Andrea Dell'Amico

05:06 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

A fixed one, the first ad a syntax error in it. Andrea Dell'Amico

04:56 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

I'm attaching the diff file. Andrea Dell'Amico

04:52 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

The changes are active on ckan-d-d4s.d4science.org. @francesco.mangiacrapa@isti.cnr.it can you test if the involved p... Andrea Dell'Amico

04:40 PM Task #13050: Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

I can anticipate that the changes here: https://github.com/ckan/ckan/pull/3430/commits/5d6949ca7602eb5039227229a01132... Andrea Dell'Amico

04:10 PM Task #13050 (In Progress): Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

I'm going to duplicate the sources on the dev instance and I'll try to produce a patch. Andrea Dell'Amico

Jan 08, 2019

06:45 PM VM Creation #13112 (Closed): perform-service development instance

A new VM is needed in order to test the new service 'perform-service'.
Such service needs to connect to the VRE's ... Fabio Sinibaldi

Jan 07, 2019

11:55 AM Task #12935 (Closed): sdi-service: upgrade commons-codec library

The library has been upgraded in production and preproduction environments. Roberto Cirillo

10:26 AM Task #11229 (Closed): Upgrade jdk on tagme.d4science.org

Roberto Cirillo

Jan 04, 2019

05:39 PM Incident #13096: Share Updates mentioning in some VRE may not work

Could not reproduce, the issue is due to the fact that it seems that arrives an empty mentioned id somehow. Patching ... Massimiliano Assante

05:21 PM Incident #13096 (In Progress): Share Updates mentioning in some VRE may not work

Massimiliano Assante

05:18 PM Incident #13096 (Closed): Share Updates mentioning in some VRE may not work

The following exception is reported.
~~~
16:10:21,919 WARN [ajp-bio-8009-exec-7][SecurityPortletContainerWrapper... Massimiliano Assante

10:44 AM Incident #13090 (Rejected): HomeLibrary stil not return VRE folder in prepod

The error was not related to the VRE folder Luca Frosini

10:24 AM Incident #13090: HomeLibrary stil not return VRE folder in prepod

Lucio please check what's the issue with the preprod repository, if necessary we can "destroy" it and recreate it. Massimiliano Assante

Dec 31, 2018

01:29 PM Incident #13090 (Rejected): HomeLibrary stil not return VRE folder in prepod

Luca Frosini

09:55 AM Task #13087: Please upgrade grsf-publisher-ws to latest version

I'm still getting the same error:
~~~
$ ./run.sh smartgears-node.yml -i inventory/hosts.production -t grsf_publis... Luca Frosini