Activity

From Sep 20, 2018 to Oct 19, 2018

Oct 19, 2018

06:00 PM Task #12527: Undeploy FARM/AquaMaps VRE: The AquaMaps VRE will be underplayed next Monday, the org.gcube.application.aquamaps.aquamapsportlet.3-1-7 only is de... Massimiliano Assante
04:08 PM Task #12742: DataMiner - Support Python 3.6: The request is described in this ticket #12642
Giancarlo Panichi
03:58 PM Task #12742 (Closed): DataMiner - Support Python 3.6: We have decided to support with DataMiner python 3.6.
So in order to test if the algorithms created for python 3.6 w... Giancarlo Panichi
11:03 AM Upgrade #12739 (Completed): /gcube/preprod upgrade to gCube 4.13: Roberto Cirillo
11:02 AM Upgrade #12738 (Completed): D4Science Infrastructure Upgrade to gCube 4.13.0: Roberto Cirillo
10:29 AM Support #12737 (Closed): Social-ISTI- mongoR4-si heartbeat fails from mongoR2-si: The mongodb server mongoR4-si.isti.cnr.it is often restarted because of communication problem with the primary node: ... Roberto Cirillo

Oct 18, 2018

05:43 PM VM Creation #12661 (Closed): create a new VM same as data-d.d4science.org to test the new URIResolver: It works fine, Thanks Lucio Lelii
03:27 PM VM Creation #12661 (Feedback): create a new VM same as data-d.d4science.org to test the new URIResolver: Done. Now the configuration correctly reports data1-d.d4science.net.
Andrea Dell'Amico
03:21 PM VM Creation #12661 (In Progress): create a new VM same as data-d.d4science.org to test the new URIResolver: There's a problem with the hostname, the VM was created as data1-d.d4science.org. Working on it.
Andrea Dell'Amico
02:46 PM VM Creation #12661 (Feedback): create a new VM same as data-d.d4science.org to test the new URIResolver: Andrea Dell'Amico
02:46 PM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: The hostname is data1-d.d4science.net, Lucio has gcube and root access.
Andrea Dell'Amico
02:32 PM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: The VM is ready, smartgears 2.2.0-4.12.1-162179 is installed. Let us know if you need a different version.
Note th... Andrea Dell'Amico
12:43 PM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: OK. Last question, smartgears from snapshots or staging?
Andrea Dell'Amico
12:30 PM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: I will manually install it for now, it's still under development, I'll give you the coordinate after the tests Lucio Lelii
11:42 AM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: You are right. Can you give us the maven coordinates for the uri-resolver? until now the applications on data*.d4scie... Andrea Dell'Amico
10:09 AM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: We need it for the next release, we have to test the URIResolver, without the new uri resolver all the release is blo... Lucio Lelii
05:42 PM Task #12703: Public pages visualised by data miner services and proxies: The information contained in the DataMiner Service metadata and pages has been updated. The services will be updated ... Giancarlo Panichi
05:21 PM Task #12703: Public pages visualised by data miner services and proxies: open mailing list
dataminer-managers@d4science.org
created, these are the destination addresses:
giancarlo... Tommaso Piccioli
04:17 PM Task #12703 (In Progress): Public pages visualised by data miner services and proxies: Please @tommaso.piccioli@isti.cnr.it , can you create a mail list through which the emails can be sent to all datamin... Giancarlo Panichi
04:37 PM Task #12527: Undeploy FARM/AquaMaps VRE: Not clear if we have to continue with the VRE undeploy or not Massimiliano Assante
03:41 PM Task #12444 (Paused): Enable TLS/SSL on the mongodb production cluster: Roberto Cirillo
03:40 PM Task #12444 (In Progress): Enable TLS/SSL on the mongodb production cluster: The certificates have been already installed on mongodb cluster and mongo volatile area instance. Roberto Cirillo
12:27 PM Upgrade #12729 (Completed): D4Science Infrastructure Upgrade to gCube 4.12.1: Roberto Cirillo
12:27 PM Upgrade #12729 (In Progress): D4Science Infrastructure Upgrade to gCube 4.12.1: Roberto Cirillo
12:26 PM Upgrade #12729 (Planned): D4Science Infrastructure Upgrade to gCube 4.12.1: Roberto Cirillo
12:24 PM Upgrade #12729 (Completed): D4Science Infrastructure Upgrade to gCube 4.12.1: Roberto Cirillo

Oct 17, 2018

08:22 PM Task #12516 (Closed): PF-KPIs VRE: new PostgreSQL database is needed: Andrea Dell'Amico
03:01 PM VRE #12344: AlienAndInvasiveSpecies VRE: do we need to add other data to GN 3? Species distribution maps are not yet present.
Pasquale Pagano
02:58 PM Task #12711 (Closed): GeoNetwork connector provisioning on GN 3.2.1: Fabio Sinibaldi
02:57 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: Ok, I changed the configuration in production by following your instruction and it works.
I renamed the titles in... Pasquale Pagano
02:47 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: Fabio Sinibaldi wrote:
> I don't have the configuration rights on production portals.
@massimiliano.assante@isti.... Andrea Dell'Amico
02:41 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: I don't have the configuration rights on production portals. Fabio Sinibaldi
01:17 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: It works for me in pre. Have you fixed the production? Pasquale Pagano
12:13 PM Task #12711 (Feedback): GeoNetwork connector provisioning on GN 3.2.1: Actually it works (but maybe there's a bug when dealing with anchors).
Double checked in preprod portal, and fixe... Fabio Sinibaldi
02:44 PM Task #12671 (Closed): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: I don't have enough details to perform tests in production via the DataMiner or other services.
Also, I wouldn't ... Fabio Sinibaldi
12:40 PM Task #12671 (Feedback): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: Library upgraded on the services above.
Please @fabio.sinibaldi@isti.cnr.it could you check? Roberto Cirillo
12:09 PM Task #12671 (In Progress): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: Roberto Cirillo
12:08 PM Task #12671: provision of patched org.gcube.spatial-data.geonetwork.3.2.3: I'm goingo to replace the geonetwork library on the following services:
dataminer
spd,
tabulardata
Roberto Cirillo
02:13 PM Task #12599 (In Progress): Is it possible to install rJava on RStudioLab?: I'm still not able to find the reason why the load of the library fails from inside rstudio while it works from a she... Andrea Dell'Amico
12:55 PM VM Creation #12592 (Closed): StorageHub in preproduction: Good news. I'm going to close this ticket Roberto Cirillo
12:23 PM VM Creation #12592: StorageHub in preproduction: it seems ok Lucio Lelii
10:40 AM VM Creation #12592 (Feedback): StorageHub in preproduction: Please @lucio.lelii@isti.cnr.it could you check if the service is configured properly now? Roberto Cirillo
10:38 AM VM Creation #12592: StorageHub in preproduction: I've opened the postgres to the new storagehub instance and now it seems to work fine. Roberto Cirillo
11:18 AM Task #12714 (Rejected): DataMiner - Check svn configuration of dataminer-ghost-d.dev.d4science.org: I'm going to close this ticket since the ghost is just an alias and the dm installation was done manually.
If you ne... Roberto Cirillo

Oct 16, 2018

07:55 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: Note that it does not work even in Pre-production ... The call issued in this case is the following
Public applica... Pasquale Pagano
07:52 PM Task #12711 (In Progress): GeoNetwork connector provisioning on GN 3.2.1: It does not work in production. The call issued by the browser is the following
https://geonetwork-spatialdata.d4s... Pasquale Pagano
07:38 PM Task #12711 (Feedback): GeoNetwork connector provisioning on GN 3.2.1: The connector has been installed into geonetwork-spatialdata.d4science.org too. Andrea Dell'Amico
05:30 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: geonetwork.pre.d4science.net is ready to be tested.
Andrea Dell'Amico
05:20 PM Task #12711: GeoNetwork connector provisioning on GN 3.2.1: The playbook is ready to be tested. I only need to know where. Andrea Dell'Amico
03:02 PM Task #12711 (In Progress): GeoNetwork connector provisioning on GN 3.2.1: Andrea Dell'Amico
12:06 PM Task #12711 (Closed): GeoNetwork connector provisioning on GN 3.2.1: GeoNetwork 3.2.1 provisioning tasks should include the installation and configuration of gcube geonetwork-connector.
... Fabio Sinibaldi
07:12 PM Task #12719 (Closed): Equip FIT4RRI with VRE with Wiki facilities: The wiki is there. Leonardo Candela
06:54 PM Task #12719 (Closed): Equip FIT4RRI with VRE with Wiki facilities: The FIT4RRI should be equipped with a Wiki Leonardo Candela
06:42 PM VM Creation #12592: StorageHub in preproduction: I've pushed right now the new storagehub preproduction files Roberto Cirillo
06:13 PM VM Creation #12592: StorageHub in preproduction: I've launched the playbook but I see the following exception:
~~~
SQLNestedException: Cannot create PoolableConne... Roberto Cirillo
05:29 PM Task #12671: provision of patched org.gcube.spatial-data.geonetwork.3.2.3: DataMiner tests are successful. Please run patch provisioning on production environment. Fabio Sinibaldi
04:06 PM Task #12714: DataMiner - Check svn configuration of dataminer-ghost-d.dev.d4science.org: Roberto Cirillo wrote:
> The dataminer ghost: dataminer-ghost-d.dev.d4science.org is an ALIAS of dataminer1-devnext ... Andrea Dell'Amico
04:02 PM Task #12714: DataMiner - Check svn configuration of dataminer-ghost-d.dev.d4science.org: The dataminer ghost: dataminer-ghost-d.dev.d4science.org is an ALIAS of dataminer1-devnext and it is not present in t... Roberto Cirillo
03:18 PM Task #12714 (Rejected): DataMiner - Check svn configuration of dataminer-ghost-d.dev.d4science.org: Check svn configuration of dataminer-ghost-d.dev.d4science.org.
The DataMiner ghost in dev should point to the algor... Giancarlo Panichi
12:47 PM Task #12678: Ansible-dataminer: manage parallel computation as parameter in web.xml: Roberto Cirillo wrote:
> The new dataminer app has been installed successfully: The new web.xml is properly managed.... Andrea Dell'Amico
11:09 AM Task #12678 (Closed): Ansible-dataminer: manage parallel computation as parameter in web.xml: The new dataminer app has been installed successfully: The new web.xml is properly managed.
I've explicitly set the... Roberto Cirillo
11:04 AM Task #12678: Ansible-dataminer: manage parallel computation as parameter in web.xml: The playbook take very long time: about one hour for update a single instance.
Most of the time used for installing ... Roberto Cirillo
10:23 AM Task #12678 (In Progress): Ansible-dataminer: manage parallel computation as parameter in web.xml: Roberto Cirillo
12:16 PM Task #12058: IS-Collector: Restart all the smartgears services with too many open connections to IS-Collector: socialnetworking should be restarted again. I'm going to restart it. Roberto Cirillo
11:42 AM Task #12705 (Closed): dataminer1-proto: full of twitterMonitor log: Thanks @salvatore.minutoli@iit.cnr.it for your feedback. It's not needed to remove your log from the code since the l... Roberto Cirillo
11:11 AM Task #12705: dataminer1-proto: full of twitterMonitor log: This behaviour is actually normal. I thought old logs would be removed. However, if needed, I could remove the log fr... Salvatore Minutoli
10:09 AM Task #12705: dataminer1-proto: full of twitterMonitor log: @salvatore.minutoli@iit.cnr.it do you think it is a normal behavior?
The log is printed in the dataminer instance. Roberto Cirillo
09:58 AM Task #12705 (Closed): dataminer1-proto: full of twitterMonitor log: Since 27th September, the analysis.log file is full of the following log line:
~~~
2018-09-27 10:21:55,983 [pool-... Roberto Cirillo
10:26 AM Task #12703: Public pages visualised by data miner services and proxies: I'm reassigning to Giancarlo, when he'll have the new index.html ready I'll change the playbook to replace the origin... Andrea Dell'Amico
10:07 AM Task #12703: Public pages visualised by data miner services and proxies: I would also suggest to reconsider the WPS responses.
For instance this is the getCapabilities
~~~
http://data... Leonardo Candela

Oct 15, 2018

07:56 PM Task #12703 (Closed): Public pages visualised by data miner services and proxies: If you access either http://dataminer0-proto.d4science.org//wps/ or http://dataminer-prototypes.d4science.org/wps/ y... Pasquale Pagano
06:41 PM VM Creation #8561 (In Progress): Move authorization service instance on a new VM called auth-dev.d4science.org: I just added the CNAME again, some services still break.
Andrea Dell'Amico
06:02 PM Incident #12696 (Closed): geonetwork-spatialdata.d4science.org denied access to database: GeoNetwork is now connected and the error is no more stated in the webapp logs. Fabio Sinibaldi
05:12 PM Incident #12696 (In Progress): geonetwork-spatialdata.d4science.org denied access to database: I just reloaded the postgresql service to be on the safe side, but in the logs I saw:'
~~~
2018-10-15 16:59:43.41... Andrea Dell'Amico
05:03 PM Incident #12696 (Closed): geonetwork-spatialdata.d4science.org denied access to database: Node configuration seems faulty. From logs I can see the following error (seemingly the cause of other following ones... Fabio Sinibaldi
05:54 PM Incident #12695 (Closed): virtuoso.i-marine.d4science.org certificate is expired, so the service is not working inside the VRE: Fixed. Restarted the service to load the latest certificate.
Kostas Kakaletris
03:47 PM Incident #12695 (Closed): virtuoso.i-marine.d4science.org certificate is expired, so the service is not working inside the VRE: The embedded services, eg https://services.d4science.org/group/biodiversitylab/sparql-search show an empty page bec... Andrea Dell'Amico
04:54 PM Task #12682: Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: Leonardo Candela wrote:
> @francesco.mangiacrapa@isti.cnr.it what about the 43 services?
>
A plausible answer ... Francesco Mangiacrapa
03:56 PM Task #12682: Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: @francesco.mangiacrapa@isti.cnr.it what about the 43 services?
BTW the catalogue is working and "visible" to all ... Leonardo Candela
03:49 PM Task #12682: Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: On the BB Catalogue, the harvesting of dedicated GN (http://geonetwork-french-tunaatlas.d4science.org/geonetwork/) ha... Francesco Mangiacrapa
11:04 AM Task #12682: Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: The proper organization "French Tropical Tuna Atlas" has been created on the BB Catalogue and the view per VRE activa... Francesco Mangiacrapa
10:49 AM Task #12682 (Feedback): Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: Resources created. Please could you enable the view in the VRE and check? Roberto Cirillo
10:36 AM Task #12682 (In Progress): Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: Roberto Cirillo
04:34 PM Task #12694 (Closed): GeoNetwork for AlienAndInvasiveSpecies VRE: Resource found and instance correctly registered in scope by using sdi-service. Thanks Fabio Sinibaldi
04:27 PM Task #12694 (Feedback): GeoNetwork for AlienAndInvasiveSpecies VRE: added. Please could you check? Roberto Cirillo
04:03 PM Task #12694 (In Progress): GeoNetwork for AlienAndInvasiveSpecies VRE: Roberto Cirillo
03:39 PM Task #12694 (Closed): GeoNetwork for AlienAndInvasiveSpecies VRE: Please add the geonetwork hosted on geonetwork-spatialdata.d4science.org to /d4science.research-infrastructures.eu/gC... Fabio Sinibaldi
03:05 PM Task #8673 (Closed): Reconfigure the authorization clients in dev to use https://auth-d.dev.d4science.org/ as the URL for the authentication service: I just removed node7.d.d4science.research-infrastructures.eu record from the DNS.
Andrea Dell'Amico
02:57 PM Task #8673: Reconfigure the authorization clients in dev to use https://auth-d.dev.d4science.org/ as the URL for the authentication service: I think it can be closed. Lucio Lelii
02:35 PM Task #8673: Reconfigure the authorization clients in dev to use https://auth-d.dev.d4science.org/ as the URL for the authentication service: Any news on this one? Andrea Dell'Amico
02:57 PM Task #12678 (Paused): Ansible-dataminer: manage parallel computation as parameter in web.xml: New variable managed. I need to test it in preproduction environment when the new dataminer version (1.5.5) is availa... Roberto Cirillo
02:27 PM Task #12678 (In Progress): Ansible-dataminer: manage parallel computation as parameter in web.xml: Roberto Cirillo
02:31 PM Task #10505 (Closed): R processes out of control on dataminer0-proto.d4science.org: Closing, as nobody is interested. Andrea Dell'Amico
12:53 PM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: As we have to introduce smartgears, the playbook must be changed. We are going to switch from apache to nginx too. Andrea Dell'Amico
11:55 AM VM Creation #12661: create a new VM same as data-d.d4science.org to test the new URIResolver: any news on this ? Lucio Lelii
12:36 PM VM Creation #12592: StorageHub in preproduction: The external storage data disk are specified in the description as usual. Roberto Cirillo
12:26 PM VM Creation #12592: StorageHub in preproduction: Roberto Cirillo wrote:
> I've notice that the external storage data disk described in the description are not added.... Tommaso Piccioli

Oct 12, 2018

06:36 PM Task #12682 (Closed): Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE: The French Tropical Tuna Atlas should be equipped with a CKAN Catalogue. The portlet is already there (visibility is ... Leonardo Candela
05:09 PM Task #12678 (Closed): Ansible-dataminer: manage parallel computation as parameter in web.xml: It's needed to create an ansible task for adding the parallel computation parameter in the web.xml as reported here: ... Roberto Cirillo
03:14 PM Task #12671 (Paused): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: Roberto Cirillo
03:06 PM Task #12671: provision of patched org.gcube.spatial-data.geonetwork.3.2.3: Preliminary test successful.
I'm gonna ask for more detailed tests in this environment in #12428 Fabio Sinibaldi
02:54 PM Task #12671 (Feedback): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: The library has been replaced in preprod on the following instances:
~~~
dataminer-ghost-t.pre.d4science.org
dat... Roberto Cirillo
02:46 PM Task #12671 (In Progress): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: I'm going to replace the geonetwork library first on preproduction dataminer service instance. if it works well, I'm ... Roberto Cirillo
01:03 PM Task #12671 (Closed): provision of patched org.gcube.spatial-data.geonetwork.3.2.3: The library should be provisioned on nodes that are going to interact with GeoNetwork 3.2.1. The patch involves publi... Fabio Sinibaldi

Oct 11, 2018

05:01 PM VM Creation #12592: StorageHub in preproduction: I've notice that the external storage data disk described in the description are not added. Please could you add the ... Roberto Cirillo
03:55 PM VM Creation #12592: StorageHub in preproduction: Roberto Cirillo wrote:
> I'm not able to access to storagehub.pre.d4science.net please could you give me access?
... Tommaso Piccioli
11:21 AM VM Creation #12592: StorageHub in preproduction: @lucio.lelii@isti.cnr.it the smartgears_hostname should be the same of homelibrary hostname as done in production or ... Roberto Cirillo
10:22 AM VM Creation #12592: StorageHub in preproduction: I'm not able to access to storagehub.pre.d4science.net please could you give me access? Roberto Cirillo
04:48 PM VM Creation #12661 (In Progress): create a new VM same as data-d.d4science.org to test the new URIResolver: @lucio.lelii@isti.cnr.it could you please complete the smartgears info? Tommaso Piccioli
04:00 PM VM Creation #12661 (Closed): create a new VM same as data-d.d4science.org to test the new URIResolver: This VM needs the same configuration of apache and tomcat present in data-d.d4science.org.
It needs also the install... Lucio Lelii
09:56 AM Incident #12655 (Closed): workspace down: postgres filesystem is no more accessible: Postgresql disk reactivated Tommaso Piccioli
09:42 AM Incident #12655 (Closed): workspace down: postgres filesystem is no more accessible: the postgres db hosted on
~~~
workspace-repository-pg.d4science.org
~~~
is down and if i try to restart it, I... Roberto Cirillo

Oct 10, 2018

05:07 PM VM Creation #12592 (In Progress): StorageHub in preproduction: New VM storagehub.pre.d4science.net running, to be provisioned. Tommaso Piccioli
04:47 PM Task #12639 (Closed): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: Roberto Cirillo
04:09 PM Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: I can confirm that the proto algorithms are installed correctly.
Giancarlo Panichi
12:23 PM Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: All the instances have been updated. Please @g.panichi@isti.cnr.it could you perform the last check? Roberto Cirillo
11:56 AM Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: The problem is in the web.xml file that have the old folder inside... I'm going to update the web.xml and restart the... Roberto Cirillo
11:48 AM Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: the GetCapabilities doesn't work now. I guess because after the restart the dataminer try to use the deleted folder /... Roberto Cirillo
11:09 AM Task #12639 (Feedback): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: All the instances have been changed and restarted. Please close this ticket if it is ok for you. Roberto Cirillo
10:51 AM Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: For the moment, I've upgraded only dataminer0-gw-proto.d4science.org. I'm going to change the other instances and res... Roberto Cirillo
10:44 AM Task #12639 (In Progress): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: Please @roberto.cirillo@isti.cnr.it, can you restart all DataMiner so that tomcat instances load the correct jar? Tha... Giancarlo Panichi
10:30 AM Task #12639 (Feedback): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: For testing, I've modified only dataminer0-gw-proto.d4science.org
Please @g.panichi@isti.cnr.it could you check if... Roberto Cirillo
10:04 AM Task #12639 (In Progress): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: I've never exectuted this kind of task. I hope it works as I expect Roberto Cirillo
12:53 AM Task #12599: Is it possible to install rJava on RStudioLab?: Hi @andrea.dellamico@isti.cnr.it , the instances i've tried are:
* http://ip-90-147-167-30.ct1.garrservices.it/ (fro... Emmanuel Blondel
12:47 AM Task #12599: Is it possible to install rJava on RStudioLab?: I just tried RStudioLab (my instance was rstudio1.d4science.org) and rJava loaded, here is a screenshot.
I've also ... Andrea Dell'Amico

Oct 09, 2018

04:32 PM Task #12639 (Closed): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.: The Proto Generic Workers have been configured to use the algorithms of production:
~~~
gcube@dataminer0-gw-proto... Giancarlo Panichi
02:36 PM Support #12634 (Closed): Resource leak in geonetwork processes: VM restarted Oct 9 13:25 Tommaso Piccioli
01:51 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: We will integrate it for now into the Dev VRE as well. I will create a sub-ticket on that. Matthias Filter
12:54 PM Task #12599: Is it possible to install rJava on RStudioLab?: I've tried on both RStudioLab and RPrototypingLab, and before i've restarted the R session in case Emmanuel Blondel
12:47 PM Task #12599: Is it possible to install rJava on RStudioLab?: On what instance? I’ll try to reproduce from inside studio, because the library always loads successfully when I run ... Andrea Dell'Amico
11:51 AM Task #12599: Is it possible to install rJava on RStudioLab?: still get the same error
library(rJava)
Error: package or namespace load failed for ‘rJava’:
.onLoad failed i... Emmanuel Blondel
11:39 AM Task #12599: Is it possible to install rJava on RStudioLab?: It's not even that. it seems that I have to setup a full java environment before running `R CMD javareconf`. The comm... Andrea Dell'Amico
11:01 AM Task #12599: Is it possible to install rJava on RStudioLab?: It seems that `rJava` wants `JAVA_HOME="/usr/lib/jvm/java-8-oracle/jre"`, while that variable is usually `JAVA_HOME="... Andrea Dell'Amico
10:13 AM Support #12636 (Closed): Redmine: preventing email addresses to be shown in public projects: As reported in #12333 in the case of Redmine public projects everything (including email addresses of the people invo... Leonardo Candela
09:29 AM Incident #12552 (Closed): VME-DB error after updating a VME report: Thank you all for the effort, I will proceed to close the ticket as everything is working fine. Jesus Santamaria Fernandez

Oct 08, 2018

07:15 PM Task #12614: Need server with joblength 1 to use all 16 cores and a cue system per server.: Good idea to discuss that during PBM. I would like to add a few thoughts for later discussion.
I understand that t... Lars Valentin
05:45 PM Task #12614: Need server with joblength 1 to use all 16 cores and a cue system per server.: I agree to discuss this during the next PBM.
I will add this ticket to the WP6 discussion slot. Matthias Filter
04:42 PM Task #12614: Need server with joblength 1 to use all 16 cores and a cue system per server.: Apart from the technicalities behind this request, there is an organisational issue.
It was clarified many tim... Leonardo Candela
06:41 PM Incident #12552 (Feedback): VME-DB error after updating a VME report: Jesus, good news, Reports manager updated in production and seems working.
Just for testing purposes I committed a... Massimiliano Assante
03:18 PM Incident #12552: VME-DB error after updating a VME report: Jesus, Production has not been updated yet. The fix is in integration now. Will let you know when we put the Reports ... Massimiliano Assante
03:14 PM Incident #12552: VME-DB error after updating a VME report: Dear Massimiliano,
We have tried again but still a warning message appears after updating a report even if the rep... Jesus Santamaria Fernandez
11:37 AM Incident #12552: VME-DB error after updating a VME report: The fix has been done in the code as requested, submitting a remote build now Massimiliano Assante
06:29 PM Support #12634 (Feedback): Resource leak in geonetwork processes: I'm not sure whether the problem is due to lucene or geonetwork using it (probably the use of IndexSearcher), but it'... Fabio Sinibaldi
06:12 PM Support #12634 (Closed): Resource leak in geonetwork processes: on geonetwork1-p-d4s.d4science.org (alias geonetwork.d4science.org) there are many deleted files with existing file s... Tommaso Piccioli
04:17 PM Support #12250: so called "right click feature" to send model file from folder directly to the dataminer: If this feature (the algorithm for executing FSKX-based models) is of interest for the RAKIP community only, there is... Leonardo Candela

Oct 06, 2018

03:22 PM Support #12250 (Closed): so called "right click feature" to send model file from folder directly to the dataminer: As I found out finally the variable name to accept a file and KNIME with FSK plugin is functional now, I tested the s... Lars Valentin
01:57 PM Task #12614 (Closed): Need server with joblength 1 to use all 16 cores and a cue system per server.: as explained here https://support.d4science.org/issues/11605#note-16 I follow the wish from https://support.d4science... Lars Valentin

Oct 05, 2018

02:58 PM Task #12599: Is it possible to install rJava on RStudioLab?: What i got trying to run 'library(rJava)' (in ``RStudioLab`` and ``RPrototypingLab`` VREs)
```
Error: package or ... Emmanuel Blondel
11:53 AM Task #12608 (Closed): Wiki: Update dataminer mandatory resources: The following wiki:
https://gcube.wiki.gcube-system.org/gcube/ServiceManager_Guide#Statistical_Manager
contai... Roberto Cirillo
10:44 AM Support #12607: VREModeler portlet is no more present in dev environment: Thank you @massimiliano.assante@isti.cnr.it Roberto Cirillo
10:37 AM Support #12607 (Closed): VREModeler portlet is no more present in dev environment: devsec: https://next.d4science.org/group/devsec/vre-definition
devNext: https://next.d4science.org/group/devnext/v... Massimiliano Assante
10:31 AM Support #12607 (In Progress): VREModeler portlet is no more present in dev environment: Massimiliano Assante
10:28 AM Support #12607 (Closed): VREModeler portlet is no more present in dev environment: PLease could you add the VREModeler to the dev gateway?
I've not found it in devsec and devNext VOs Roberto Cirillo

Oct 04, 2018

11:59 AM Support #12249 (Closed): Need installed KNIME 3.6 and R 3.4 including the listed plugins: Since everything is working as reported in #12578 I'm going to close this ticket and to say thank you to all the peop... Leonardo Candela
11:58 AM Support #12580 (Closed): WP6: Question on KNIME instances and DM: Leonardo Candela
11:56 AM Task #12578 (Closed): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Ok, it seems that we have completed this task. Going to close the ticket. Pasquale Pagano
10:55 AM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: I just added the test.fskx file for testing the testworkflow and I get no permission error messages anymore and the D... Lars Valentin
10:22 AM Task #12578 (Feedback): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Lars Valentin wrote:
> > It's a different problem: knime wants to write inside the knime distribution somehow, when ... Andrea Dell'Amico
08:59 AM Task #12578 (In Progress): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: > It's a different problem: knime wants to write inside the knime distribution somehow, when using your plugin (oth... Lars Valentin
11:39 AM VRE #12344: AlienAndInvasiveSpecies VRE: The "mess" is back ... my feeling is that it is not a mess at all ;) Leonardo Candela
11:25 AM VRE #12344: AlienAndInvasiveSpecies VRE: I have added GeoExplorer and SPD portlets to the VRE, and removed the mess @leonardo.candela@isti.cnr.it did Massimiliano Assante
11:20 AM VRE #12344: AlienAndInvasiveSpecies VRE: I played a bit with the VRE ... you'll find a "Data Access & Discovery" menu item including the catalogue + SPD & GIS... Leonardo Candela
10:41 AM VRE #12344: AlienAndInvasiveSpecies VRE: As I've said 6 days ago, the SPD and GeoExplorer are already in place. I guess the portlet is missing @massimiliano.... Roberto Cirillo

Oct 03, 2018

06:59 PM Task #12599 (Feedback): Is it possible to install rJava on RStudioLab?: rJava is going to be installed on every rstudio instance in the next minutes. Andrea Dell'Amico
03:02 PM Task #12599 (In Progress): Is it possible to install rJava on RStudioLab?: The problem is still the same (the JDK was updated from 7 to 8 in the meantime). I'm going to install the package glo... Andrea Dell'Amico
02:42 PM Task #12599 (Closed): Is it possible to install rJava on RStudioLab?: trying to do an installation in my environment I get this:
./configure: line 3747: /usr/lib/jvm/default-java/jre/b... Emmanuel Blondel
04:23 PM VRE #12344: AlienAndInvasiveSpecies VRE: In the VRE the following services are required to build the story:
1 - SPD
2 - GeoExplorer Gianpaolo Coro
12:28 PM Incident #10095: Workspace: a .dms strange file is returned when uploading files by Safari: Dunno why this ticket was assigned to me. Moreover, dunno if we can do anything on this type of issue. Leonardo Candela

Oct 02, 2018

08:10 PM Incident #12552: VME-DB error after updating a VME report: No sorry, it is not possible. You need to be a member of the gCube VRE to get access to SVN in write mode. Pasquale Pagano
02:39 PM Incident #12552: VME-DB error after updating a VME report: Dear Massimiliano, would be still possible to give write access to the SVN project using the email address jesus.sant... Jesus Santamaria Fernandez
05:48 PM Support #12580: WP6: Question on KNIME instances and DM: There is (and will be) only one version of KNIME (as well as of other "engines") equipping the machines forming a Dat... Leonardo Candela
11:53 AM Support #12580: WP6: Question on KNIME instances and DM: Yes, the installed KNIME version is 3.6.0 that will become 3.6.1 in the next days.
R is 3.4.4 everywhere.
Andrea Dell'Amico
11:23 AM Support #12580: WP6: Question on KNIME instances and DM: I'm sorry @lars.valentin@bfr.bund.de and @matthias.filter@bfr.bund.de , most likely it was not changed after the lat... Giancarlo Panichi
11:08 AM Support #12580: WP6: Question on KNIME instances and DM: Ja, the information from this wiki page looks also outdated to me. As example, R is mentioned in version 3.4.0 but I ... Lars Valentin
10:56 AM Support #12580: WP6: Question on KNIME instances and DM: Sorry, I'm confused again. According to the tickets:
https://support.d4science.org/issues/12249
https://support.d4s... Matthias Filter
10:34 AM Support #12580: WP6: Question on KNIME instances and DM: Knime-Full 3.3.2 is installed on the computational machines, see:
https://wiki.gcube-system.org/gcube/Pre_Installe... Giancarlo Panichi
09:25 AM Support #12580 (Feedback): WP6: Question on KNIME instances and DM: According to my knowledge there is only one KNIME engine available on DM machines to run KNIME-based workflows.
I... Leonardo Candela
05:48 PM Task #12578 (Feedback): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Andrea Dell'Amico
05:48 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Lars Valentin wrote:
> Thanks for the effort! If I understand you right the dataminer does not yet behave as expecte... Andrea Dell'Amico
02:22 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Thanks for the effort! If I understand you right the dataminer does not yet behave as expected while KNIME in batch m... Lars Valentin
02:12 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: I also run successfully:
~~~
/usr/local/bin/knime -reset -consoleLog -nosplash -application org.knime.product.KNI... Andrea Dell'Amico
01:47 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: I also run the same workflow adding the option `-destFile=workflow.zip`. The result is attached. Andrea Dell'Amico
01:45 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Lars Valentin wrote:
> great, I am looking forward that this will lead to a finally working version. Please let me k... Andrea Dell'Amico
12:13 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: great, I am looking forward that this will lead to a finally working version. Please let me know if it runs in the da... Lars Valentin
12:08 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Lars Valentin wrote:
> Thank you for testing. As stated above FSK seems to be still installed in Version=\"0.1.0.201... Andrea Dell'Amico
11:55 AM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Thank you for testing. As stated above FSK seems to be still installed in Version=\"0.1.0.201808131056\" as you see i... Lars Valentin
11:49 AM Task #12578 (In Progress): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: The installation of the plugin failed because of a bug in my script that only shows up when run by cron. I'm fixing i... Andrea Dell'Amico
11:43 AM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: I assume the DM algorithm you are using for testing purposes is FSKX T E X T (available at)
https://aginfra.d4scie... Leonardo Candela
11:03 AM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Andrea Dell'Amico wrote:
> Scripts and cron job have been installed. I tested the procedure on the dev environment a... Lars Valentin
05:08 PM VM Creation #12592: StorageHub in preproduction: I've just copied the VM requirements used in dev environment: #12592. @lucio.lelii@isti.cnr.it feel free to resize t... Roberto Cirillo
05:06 PM VM Creation #12592 (Closed): StorageHub in preproduction: This new service should serve the preproduction VO: /gcube/preprod Roberto Cirillo

Oct 01, 2018

07:58 PM Task #12578 (Feedback): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Scripts and cron job have been installed. I tested the procedure on the dev environment and the plugin installed succ... Andrea Dell'Amico
07:29 PM Task #12578 (In Progress): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: The one I get installed is `1.2.1.201809271338`. I'm adding a cron job that (re)installs the plugin daily. By tomorro... Andrea Dell'Amico
05:51 PM Task #12578: Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: (I do not have access to that VRE, FYI). Andrea Dell'Amico
05:48 PM Task #12578 (Closed): Need installed FSKlab plugin for KNIME and the provided Testworkflow in Dataminer tested: Hello Andrea,
as requested before in the other ticket above, I would like to ask you to install our latest version... Lars Valentin
07:01 PM Support #12580 (Closed): WP6: Question on KNIME instances and DM: Is there the opportunity to specify different KNIME instances / versions as "executors" when integrating a KNIME WF a... Matthias Filter
06:17 PM Upgrade #12574 (Completed): Infra-gateways third update to gCube 4.12.1: Massimiliano Assante
05:51 PM Upgrade #12574 (In Progress): Infra-gateways third update to gCube 4.12.1: Massimiliano Assante
12:32 PM Upgrade #12574 (Planned): Infra-gateways third update to gCube 4.12.1: Massimiliano Assante
12:32 PM Upgrade #12574 (Completed): Infra-gateways third update to gCube 4.12.1: This update contains the fix for Incident #12563
Massimiliano Assante
05:01 PM VRE #12344: AlienAndInvasiveSpecies VRE: @roberto.cirillo@isti.cnr.it, I just created the GR CkanPorltet and activated the view per VRE (see at https://servic... Francesco Mangiacrapa
03:59 PM Task #12443 (Closed): Enable TLS/SSL on the mongodb development cluster: The CAFile with the root CA and the intermediate one, now is provided directly by playbook and not create on the fly.... Roberto Cirillo
03:15 PM Task #12443: Enable TLS/SSL on the mongodb development cluster: I've tried to delete the following file: /etc/pki/mongodb/lets-encrypt-x3-cross-signed.pem
and re run the playbook ... Roberto Cirillo
03:23 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Lars Valentin wrote:
>
> What Andrea was referring to was the direct use of a .knwf file (KNime WorkFlow).
>
> ... Andrea Dell'Amico
03:19 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Leonardo Candela wrote:
> the effort and time needed to install another version of KNIME will be reported. From a pr... Andrea Dell'Amico

Sep 28, 2018

04:52 PM VRE #12344: AlienAndInvasiveSpecies VRE: I've added the CkanConnector by ansible. Now it is available on AlienAndInvasiveSpecies VRE Roberto Cirillo
04:03 PM VRE #12344: AlienAndInvasiveSpecies VRE: I've added the catalogue and db resources could you check if other resources are needed.
I'm not able to reach the w... Roberto Cirillo
03:46 PM VRE #12344: AlienAndInvasiveSpecies VRE: @roberto.cirillo@isti.cnr.it we need to add the ckan-connector of ckan-d4s1 and the other resources (GR/RR) to presen... Francesco Mangiacrapa
03:33 PM VRE #12344: AlienAndInvasiveSpecies VRE: I just created the organization on the ckan-d4s1 (at https://ckan-d4s1.d4science.org/organization/alienandinvasivespe... Francesco Mangiacrapa
02:47 PM VRE #12344: AlienAndInvasiveSpecies VRE: Roberto Cirillo wrote:
> The resources and services 1,2,3,4 are in place. (4 should be substituted when GN v3 is rea... Leonardo Candela
12:51 PM VRE #12344: AlienAndInvasiveSpecies VRE: The resources and services 1,2,3,4 are in place. (4 should be substituted when GN v3 is ready)
I need to understand ... Roberto Cirillo
02:42 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Dear @lars.valentin@bfr.bund.de and @matthias.filter@bfr.bund.de
the effort and time needed to install another ve... Leonardo Candela
12:11 PM Incident #12552: VME-DB error after updating a VME report: The change is just replacing 5000 in the read timeout by 15000 so if possible please go ahead with the modification. Jesus Santamaria Fernandez
11:16 AM Incident #12552: VME-DB error after updating a VME report: D4Science only hosts the source code and build it to provide the Reports Manager webapp. The library was developed by... Massimiliano Assante
10:46 AM Incident #12552: VME-DB error after updating a VME report: The read timeout is set in the AbstractRSGClient class (line 93):
http://svn.research-infrastructures.eu/public/d4sc... Jesus Santamaria Fernandez

Sep 27, 2018

06:32 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Leonardo Candela wrote:
> This is definitely a good news.
>
Indeed!
> If I get it correctly, the FSK lab file... Lars Valentin
12:03 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Thx for the efforts and the progress.
Two questions:
1): Would it be a big issue for you to install KNIME 3.6.1 ?... Matthias Filter
05:29 PM VRE #12344 (In Progress): AlienAndInvasiveSpecies VRE: In the VRE the following services with respective portlets are requested:
1 - DataMiner
2 - SPD
3 - GeoExplorer
4... Gianpaolo Coro

Sep 26, 2018

07:09 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: This is definitely a good news.
If I get it correctly, the FSK lab files (including the encoding of a model as a ... Leonardo Candela
06:33 PM Support #12249 (Feedback): Need installed KNIME 3.6 and R 3.4 including the listed plugins: Matthias Filter wrote:
> Unfortunately this does not work as our IT does not allow communication via ssh.
> In add... Andrea Dell'Amico
12:09 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: @matthias.filter@bfr.bund.de @lars.valentin@bfr.bund.de I'm wondering you can start a dialogue with the KNIME team, I... Leonardo Candela
09:55 AM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: Unfortunately this does not work as our IT does not allow communication via ssh.
In addition I have to stress that ... Matthias Filter
06:15 PM Incident #12552: VME-DB error after updating a VME report: Jesus Santamaria Fernandez wrote:
> I am checking the reports-store-gateway-client version 1.0.2 where the timeout i... Massimiliano Assante
06:10 PM Incident #12552: VME-DB error after updating a VME report: I am checking the reports-store-gateway-client version 1.0.2 where the timeout is set in the AbstractRSGClient abstra... Jesus Santamaria Fernandez
06:06 PM Incident #12552: VME-DB error after updating a VME report: Jesus Santamaria Fernandez wrote:
> The log is showing a timeout error due to the time that takes the service to res... Massimiliano Assante
05:54 PM Incident #12552: VME-DB error after updating a VME report: The log is showing a timeout error due to the time that takes the service to respond.
Due to the current performance... Jesus Santamaria Fernandez
04:24 PM Incident #12552: VME-DB error after updating a VME report: here's the server log
~~~
Hi Jesus,
please find the server log related oto a VME update report
~~~
2018-0... Massimiliano Assante
10:24 AM Incident #12552 (In Progress): VME-DB error after updating a VME report: Massimiliano Assante
09:37 AM Incident #12552 (Closed): VME-DB error after updating a VME report: In order to reproduce the steps it is necessary to edit an existing VME report in the VME-DB application, update it a... Jesus Santamaria Fernandez
04:57 PM Task #12443 (Feedback): Enable TLS/SSL on the mongodb development cluster: I changed the playbook so that it builds the CAfile adding both the root CA and the intermediate one. To ensure that ... Andrea Dell'Amico
10:33 AM Task #12443: Enable TLS/SSL on the mongodb development cluster: This change doesn't work. Now I see this error server side when I try to connect to the mongo by my client:
~~~
2... Roberto Cirillo
12:03 PM Task #12468 (Closed): Add DataMiner (production cluster) to PerformFish-KPIs VRE: Gianpaolo Coro
08:40 AM Support #12508: Access logs for SDILab geonetwork: In order to better assess what's wrong I would need to access the remote DB. Can this be authorized through online Pg... Emmanuel Blondel

Sep 25, 2018

08:08 PM Task #12443: Enable TLS/SSL on the mongodb development cluster: Well, if it's what they want... I just changed the playbook so that by default it uses the `DST_Root_CA_X3` CA file, ... Andrea Dell'Amico
12:09 PM Task #12443: Enable TLS/SSL on the mongodb development cluster: I think there is a problem with our sslCAFile.
As reported here: https://jira.mongodb.org/browse/SERVER-21003
The ... Roberto Cirillo
11:37 AM Task #12443 (In Progress): Enable TLS/SSL on the mongodb development cluster: I've tried to switch the cluster configuration from allowSSL to preferSSL but I see the following error on the primar... Roberto Cirillo
07:32 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: I run both the workflows, they still fail and there's always the message related to the lock file.
We are stalled,... Andrea Dell'Amico
07:05 PM Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins: The only `lock` files I see are the ones listed (3.6.0 is from our installation, 3.6.1 is your tar file):
~~~
./k... Andrea Dell'Amico
05:13 PM Support #12508: Access logs for SDILab geonetwork: Generated dump file in VRE Folder under "Support Activity" > "12508" (quick link https://goo.gl/7rZPMr). Fabio Sinibaldi
03:44 PM Support #12508 (In Progress): Access logs for SDILab geonetwork: I will investigate a bit more. Some null entry is causing this issue somewhere.. Do you have possibility to make a du... Emmanuel Blondel

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