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From Nov 04, 2017 to Dec 03, 2017

Dec 03, 2017

08:25 PM Task #10518 (Closed): Add the CMSY_LEGACY algorithm to the StockAssessment VRE
The new CMSY_LEGACY algorithm should be added to the StockAssessment VRE ASAP. Gianpaolo Coro
08:23 PM Task #10479: Cloud Provisioning Requests
OK that explains everything. Is it possible perhaps to use the -genericworkers prefix for the generic workers machine... Gianpaolo Coro
08:08 PM Task #10479: Cloud Provisioning Requests
The script is running. But I just realized that the hosts you reported in your first comment but http://ip-90-147-167... Andrea Dell'Amico
07:59 PM Task #10479: Cloud Provisioning Requests
No problem doing it. But the haproxy statistics don't lie
Andrea Dell'Amico
07:39 PM Task #10479: Cloud Provisioning Requests
I simply repeatedly invoked the HTTP Get request above, but eventually the calls did not go on all the machines. This... Gianpaolo Coro
07:21 PM Task #10479: Cloud Provisioning Requests
I don't know what you did, but the requests are always perfectly balanced between all servers. You can see by yoursel... Andrea Dell'Amico
07:11 PM Task #10479: Cloud Provisioning Requests
Friday I run 200 executions towards Cloud1 by repeatedly invoking this HTTP Get request:
~~~
http://dataminer-clo...
Gianpaolo Coro
07:01 PM Task #10479: Cloud Provisioning Requests
Are you sure that those instances received any job request after Nov 29th? Because the logs configuration were update... Andrea Dell'Amico
06:36 PM Task #10479: Cloud Provisioning Requests
What about point 3 and https://support.d4science.org/issues/10479#note-1 ?
Logs are still empty.
Gianpaolo Coro
05:42 PM Task #10479 (Closed): Cloud Provisioning Requests
Andrea Dell'Amico
05:41 PM Task #10479: Cloud Provisioning Requests
The new configuration is operational. I removed the `cloud1` cluster configuration from the CNR haproxy instance. Andrea Dell'Amico
02:08 PM Task #10479: Cloud Provisioning Requests
The haproxy stats on dataminer-lb.garr.d4science.org:8880 are accessible with the same credentials that are valid for... Andrea Dell'Amico
01:47 PM Task #10479: Cloud Provisioning Requests
I just reconfigured the dataminer haproxy and moved the host dataminer-cloud1.d4science.org. It is now a CNAME of dat... Andrea Dell'Amico

Dec 01, 2017

08:04 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
Still to be moved:
~~~
mongo2-d-d4s.d4science.org (waiting Roberto to switch the PRIMARY node)
slave1.ci.rese...
Tommaso Piccioli
07:51 PM Task #10479: Cloud Provisioning Requests
I just adopted a configuration on both the CNR haproxy instance and the dataminer.garr loadbalancer that makes all th... Andrea Dell'Amico
06:28 PM Task #8555: Please provide more resource to Redmine
I think we can close this one. There's space for more optimisations but we should disable some features we rely on. A... Andrea Dell'Amico
11:20 AM Task #8555: Please provide more resource to Redmine
I confirm it is better now, I think we reduced the waiting time of 50% in average Massimiliano Assante
01:23 AM Task #8555: Please provide more resource to Redmine
I added again the global_roles plugin too, btw. Andrea Dell'Amico
01:20 AM Task #8555: Please provide more resource to Redmine
I also see that we are using both the problematic configurations reported in the ticket:
* Allow issue assignment...
Andrea Dell'Amico
01:16 AM Task #8555 (Feedback): Please provide more resource to Redmine
Things seem slightly better now. I would not say that's fast now, but better. Andrea Dell'Amico
01:14 AM Task #8555: Please provide more resource to Redmine
I just applied the fix suggested here: http://www.redmine.org/issues/17700 Andrea Dell'Amico
01:10 AM Task #8555: Please provide more resource to Redmine
But I think I've found the culprit: http://www.redmine.org/issues/14906
I think we can live without that.
Andrea Dell'Amico
01:07 AM Task #8555: Please provide more resource to Redmine
I added again `Redmine Code Review plugin`. While the other one was already installed.
Andrea Dell'Amico
06:17 PM Task #10504 (Feedback): SAI - Remove SAI portlets from environments that are not development VRE
Roberto Cirillo
05:34 PM Task #10504 (In Progress): SAI - Remove SAI portlets from environments that are not development VRE
I pass now the ticket to Roberto to add the right resources. Massimiliano Assante
03:21 PM Task #10504: SAI - Remove SAI portlets from environments that are not development VRE
It is also good to assign the proto cluster, but then we need to add all the DMPoolManager and SAI resources on the I... Giancarlo Panichi
03:10 PM Task #10504: SAI - Remove SAI portlets from environments that are not development VRE
we should not remove SAI from the VREs that are using it. Rather, we should assign the proper resources to these VREs... Pasquale Pagano
12:56 PM Task #10504 (Closed): SAI - Remove SAI portlets from environments that are not development VRE
Remove SAI portlets from VRE that are not development VRE.
For example:
Taras Günther use SAI in /d4science.resea...
Giancarlo Panichi
03:49 PM Task #10487 (Closed): Give access to UOA machines to contact SimulFishGrowth_prod
Yes, we now have access. Dimitris Katris
03:17 PM Task #10487 (Feedback): Give access to UOA machines to contact SimulFishGrowth_prod
Done. Can you check?
Andrea Dell'Amico
03:17 PM Task #10487 (In Progress): Give access to UOA machines to contact SimulFishGrowth_prod
Andrea Dell'Amico
03:04 PM Task #10487: Give access to UOA machines to contact SimulFishGrowth_prod
I think that we need access to all. Thank you! Dimitris Katris
02:32 PM Task #10487: Give access to UOA machines to contact SimulFishGrowth_prod
What databases do you need to access? All the SimulFishGrowth ones?
~~~
SimulFishGrowth | sfguser
SimulFi...
Andrea Dell'Amico
03:12 PM Task #10505: R processes out of control on dataminer0-proto.d4science.org
Since the incident has been solved, please either change the tracker or close this issue. Pasquale Pagano
01:05 PM Task #10505: R processes out of control on dataminer0-proto.d4science.org
I just killed them to be able to start the dataminer again, but as it's not the first time that it happens it should ... Andrea Dell'Amico
01:04 PM Task #10505 (Closed): R processes out of control on dataminer0-proto.d4science.org
There are a lot of them, and dataminer cannot start because they are using too much RAM:
~~~
gcube 4623 0.0 ...
Andrea Dell'Amico
02:41 PM Task #9213: enable calDAV authentication on D4Science Gateways
I don't think so: from the haproxy point of view they are all remote targets, it never points to 'localhost' or somet... Andrea Dell'Amico
10:44 AM Task #9213: enable calDAV authentication on D4Science Gateways
The difference between liferay/tomcat preproduction cluster and the production one is that in case of preproduction t... Massimiliano Assante
12:59 AM Task #9213: enable calDAV authentication on D4Science Gateways
I also tried to start a http frontend on port 8443 and use it to backend a single tomcat instance. It does not work (... Andrea Dell'Amico
12:51 AM Task #9213: enable calDAV authentication on D4Science Gateways
I just made another test, to add confusion. On both the pre and production load balancers I activated a frontend that... Andrea Dell'Amico
12:30 AM Task #9213: enable calDAV authentication on D4Science Gateways
It does not work, really. I can add a calendar only when a single tomcat instance is running, and this explains why i... Andrea Dell'Amico
01:06 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> As a last yesterday's resort I have used the old command I'd been using to upload packages befo...
Costantino Perciante
11:59 AM Task #10279: Large file upload limit on the workspace
As a last yesterday's resort I have used the old command I'd been using to upload packages before (but which at some ... Marek Horst
12:40 PM Task #10187 (In Progress): Enhance SAI
The following points have been resolved in the release gCube 4.8:
* avoid users to put special characters in the d...
Giancarlo Panichi
12:08 AM Task #7356 (Feedback): Please check HA Load Balancer on preprod
Andrea Dell'Amico
12:07 AM Task #7356 (In Progress): Please check HA Load Balancer on preprod
I tried all the possible combinations, alternatively restarting nginx on the two nodes, and the requests are always b... Andrea Dell'Amico
12:05 AM Task #6232 (In Progress): Enable Infrastructure Gateway cluster communication behind firewall
I'm going to test on preproduction Andrea Dell'Amico

Nov 30, 2017

11:46 PM Task #6232 (Feedback): Enable Infrastructure Gateway cluster communication behind firewall
Andrea Dell'Amico
11:45 PM Task #6232 (In Progress): Enable Infrastructure Gateway cluster communication behind firewall
(sorry, the comment was meant to another ticket) Andrea Dell'Amico
06:42 PM Task #8555: Please provide more resource to Redmine
Luca Frosini wrote:
> Repository tab in gcube project seems not working properly anymore. The revision and the comme...
Andrea Dell'Amico
06:16 PM Task #8555: Please provide more resource to Redmine
@andrea.dellamico@isti.cnr.it Repository tab in gcube project seems not working properly anymore. The revision and th... Luca Frosini
06:15 PM Task #9213: enable calDAV authentication on D4Science Gateways
It's now working on preproduction. It seems that it could depend by some configuration that I just moved from global ... Andrea Dell'Amico
06:10 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Marek Horst wrote:
> > Costantino Perciante wrote:
> > >
> > > Marek, we incremented some n...
Costantino Perciante
05:14 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Costantino Perciante wrote:
> >
> > Marek, we incremented some nginx parameters to avoid tim...
Marek Horst
04:31 PM Task #10279: Large file upload limit on the workspace
Costantino Perciante wrote:
>
> Marek, we incremented some nginx parameters to avoid timeouts. Could you retry onc...
Marek Horst
04:26 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Another attempt of `epmc-text-20171017.gz` upload has just finished with the same result.
>
...
Costantino Perciante
03:12 PM Task #10495 (Closed): Update nginx configuration on preprod homelibrary webapp: requests with file too big are rejected
Done. The limit is now 50GB as in the production environment. Andrea Dell'Amico
03:05 PM Task #10495: Update nginx configuration on preprod homelibrary webapp: requests with file too big are rejected
from nginx logs I see the following error:
~~~
2017/11/30 14:51:01 [error] 630#0: *216751 client intended to send...
Roberto Cirillo
03:02 PM Task #10495 (Closed): Update nginx configuration on preprod homelibrary webapp: requests with file too big are rejected
I'm not able to upload a file of 9GB on the home-library-webapp in preprod.
Could you increment the size of the al...
Costantino Perciante
02:52 PM VM Creation #10482 (Closed): New Joomla Portal
Andrea Dell'Amico
09:10 AM Task #10487 (Closed): Give access to UOA machines to contact SimulFishGrowth_prod
Some firewall rules are probably blocking some servers in University of Athens to contact a database located at a CNR... Dimitris Katris

Nov 29, 2017

08:37 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
Only some dev VMs on dlib18x remains (thanks to Tom, he is doing all the work). Andrea Dell'Amico
12:36 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
Host node26.d.d4science.research-infrastructures.eu deleted
Host node1-d-d4s.d4science.org has been already migrat...
Tommaso Piccioli
08:20 PM Task #10279: Large file upload limit on the workspace
Another attempt of `epmc-text-20171017.gz` upload has just finished with the same result.
Time taken suggest whol...
Marek Horst
06:50 PM Task #10279: Large file upload limit on the workspace
Costantino Perciante wrote:
> Everything should work now, so if something fails we must check the reason why it did....
Marek Horst
06:21 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Costantino Perciante wrote:
> > There is a scheduled maintainance downtime of the infrastructu...
Costantino Perciante
05:50 PM Task #10279: Large file upload limit on the workspace
Costantino Perciante wrote:
> There is a scheduled maintainance downtime of the infrastructure today. Some of the er...
Marek Horst
01:39 PM Task #10279: Large file upload limit on the workspace
There is a scheduled maintainance downtime of the infrastructure today. Some of the errors may be related to this. It... Costantino Perciante
01:16 PM Task #10279 (In Progress): Large file upload limit on the workspace
I need to reopen this ticket because we have to reupload packages.
Currently the problem is I am unable to delete ...
Marek Horst
07:58 PM VM Creation #10482 (Feedback): New Joomla Portal
Andrea Dell'Amico
05:24 PM VM Creation #10482 (In Progress): New Joomla Portal
demo.openportal.d4science.org 146.48.123.161
Andrea Dell'Amico
03:57 PM VM Creation #10482 (Closed): New Joomla Portal
I need a new Joomla Installation (similar to #2106).
It is necessary for the deployment of a DEMO portal (it must ...
Michele Artini
06:46 PM Upgrade #10073 (Completed): D4Science Infrastructure Upgrade to gCube 4.8.0
Roberto Cirillo
06:45 PM Upgrade #10073 (In Progress): D4Science Infrastructure Upgrade to gCube 4.8.0
Roberto Cirillo
06:44 PM Upgrade #10073 (Planned): D4Science Infrastructure Upgrade to gCube 4.8.0
Roberto Cirillo
05:06 PM Upgrade #10454 (Completed): FARM VO upgrade to gCube 4.8.0
Roberto Cirillo
03:45 PM Upgrade #10454 (In Progress): FARM VO upgrade to gCube 4.8.0
Roberto Cirillo
05:04 PM Upgrade #10453 (Completed): gCubeApps VO upgrade to gCube 4.8.0
Roberto Cirillo
02:53 PM Upgrade #10453 (In Progress): gCubeApps VO upgrade to gCube 4.8.0
Roberto Cirillo
04:57 PM Upgrade #10458 (Completed): D4Science Root VO upgrade to gCube 4.8
Roberto Cirillo
02:06 PM Upgrade #10458 (In Progress): D4Science Root VO upgrade to gCube 4.8
Roberto Cirillo
04:56 PM Upgrade #10456 (In Progress): ParthenosVO VO upgrade to 4.8.0
Roberto Cirillo
04:14 PM Upgrade #10468 (Completed): SoBigData VO upgrade to 4.8.0
Roberto Cirillo
04:07 PM Upgrade #10468 (In Progress): SoBigData VO upgrade to 4.8.0
Roberto Cirillo
04:08 PM Upgrade #10455 (Completed): D4Research VO upgrade to 4.8.0
Roberto Cirillo
03:58 PM Upgrade #10455 (In Progress): D4Research VO upgrade to 4.8.0
Roberto Cirillo
04:04 PM Task #8555: Please provide more resource to Redmine
Removed. It's still very slow, but I'll need some quiet hours to examine the postgresql queries again. Andrea Dell'Amico
12:04 PM Task #8555: Please provide more resource to Redmine
OK, I'll do it at the start of the downtime window. Andrea Dell'Amico
09:51 AM Task #8555: Please provide more resource to Redmine
So I think we cam manage the rest of the people manually. Luca Frosini
03:51 PM Task #10479 (In Progress): Cloud Provisioning Requests
Gianpaolo Coro wrote:
> 3 - save the DM logs up to 3 months earlier
I'm running the log reconfiguration right now...
Andrea Dell'Amico
01:15 PM Task #10479: Cloud Provisioning Requests
There are Garr machines that need to have logging double checked:
Machines that are not logging at all:
http://...
Gianpaolo Coro
12:37 PM Task #10479 (Closed): Cloud Provisioning Requests
A number of requests for the Cloud computing provisioning service:
1 - access the dataminer.d4science.org:8880 pag...
Gianpaolo Coro
03:12 PM Incident #10262: Cannot see who liked posts on VREs of Parthenos
The issue has been fixed in production with the rollout of gCube 4.8.0 Massimiliano Assante
03:08 PM Upgrade #10277 (Completed): D4Science Preprod Gateway upgrade to gCube 4.8.0
Massimiliano Assante
02:40 PM Upgrade #10278 (Completed): D4Science Gateways upgrade to gCube 4.8.0
Massimiliano Assante
02:09 PM Upgrade #10278 (In Progress): D4Science Gateways upgrade to gCube 4.8.0
Massimiliano Assante
12:33 PM Task #10358 (Closed): Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
We will destroy this one, and a couple of the ones from the ones requested for the FAO course. See #10223 Andrea Dell'Amico
12:31 PM Task #10223: Provide machines for FAO course
After talking with GP we decided to finally add those VMs to the `cloud1` cluster. We also destroy some of them: two ... Andrea Dell'Amico

Nov 28, 2017

06:01 PM Task #10478 (Closed): Dismiss old message-broker
In order to dismiss the message-broker VM
~~~
message-broker.d4science.research-infrastructures.eu
~~~
it's ...
Roberto Cirillo
04:35 PM Task #10223: Provide machines for FAO course
As those VMs were requested to face the FAO course, can we destroy some of them?
Andrea Dell'Amico
04:19 PM Task #10467 (In Progress): I need a way to communicate with the IS from a script
A link to the REST API was provided: https://dev.d4science.org/swagger/registry/ Andrea Dell'Amico
04:03 PM Task #10317: Increase the resources of dataminer[1:5]-p-d4s.d4science.org
dataminer1-p-d4s.d4science.org: move from dlib23x.dom0.research-infrastructures.eu to dlib34x.dom0.research-infrastru... Andrea Dell'Amico
03:56 PM VM Creation #10382 (Closed): Extend Resources to D-Net Index
Andrea Dell'Amico
03:31 PM Upgrade #10455 (Planned): D4Research VO upgrade to 4.8.0
Roberto Cirillo
03:30 PM Upgrade #10468 (Planned): SoBigData VO upgrade to 4.8.0
Roberto Cirillo
10:14 AM Upgrade #10468: SoBigData VO upgrade to 4.8.0
**HostingNode**
*WHN to upgrade*
* **(CNR) DONE** twittermon1.d4science.org
**Smartgears services**
* *...
Roberto Cirillo
10:11 AM Upgrade #10468 (Completed): SoBigData VO upgrade to 4.8.0
Roberto Cirillo
03:30 PM Upgrade #10456 (Planned): ParthenosVO VO upgrade to 4.8.0
Roberto Cirillo
10:16 AM Upgrade #10456: ParthenosVO VO upgrade to 4.8.0
**Configuration**
* add ParthenosVO scope to all the WHNs under the following clusters:
* **(CNR) DONE** data...
Roberto Cirillo
03:30 PM Upgrade #10454 (Planned): FARM VO upgrade to gCube 4.8.0
Roberto Cirillo
03:28 PM Upgrade #10453 (Planned): gCubeApps VO upgrade to gCube 4.8.0
Roberto Cirillo
02:02 PM Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
I talked with Roberto. The dataminer will be moved into the production pool.
Andrea Dell'Amico
11:50 AM Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
I read the description, but @gianpaolo.coro@isti.cnr.it told me repeatedly that he's sure it's still needed for TextC... Andrea Dell'Amico
10:24 AM Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
As explained in the description, TextCrowd is served by "dataminer-prototypes" cluster so this instance should be add... Roberto Cirillo
01:28 PM Task #8555: Please provide more resource to Redmine
Luca Frosini wrote:
> Instead the following the has to be admin
> Pasquale Pagano
> Luca Frosini
> Andrea Dell'...
Andrea Dell'Amico
11:25 AM Task #8555: Please provide more resource to Redmine
I just remember that we installed such a plugin to avoid to grant them admin role to people which has to be manager i... Luca Frosini
12:56 PM Support #10470 (Closed): Create new user Vincenzo Terrano
I sent a welcome email to the user to complete the registration on https://manage.research-infrastructures.eu (to acc... Tommaso Piccioli
12:26 PM Support #10470 (In Progress): Create new user Vincenzo Terrano
Tommaso Piccioli
12:22 PM Support #10470 (Closed): Create new user Vincenzo Terrano
For WP7 a new developer will support ENG activities: Vincenzo Terrano (vincenzo.terrano@eng.it). May you create an u... Ciro Formisano
11:47 AM Task #10237: Please raise the timeout-limit of virtuoso.parthenos.d4science.org
@matej.durco@oeaw.ac.at please verify that he SPARQL query runs now and close the ticket if ok. Massimiliano Assante
11:37 AM Task #10440: Please add a smart-executor instance with accounting-insert-rstudio-se-plugin on each RStudio nodes
I think this task should be reconsidered. In addition, what happens if an user has more than one home (not duplicated... Roberto Cirillo
11:16 AM Task #8526 (Closed): Upgrade smart-executor service in production environment
All the instances were upgraded. Roberto Cirillo

Nov 27, 2017

07:40 PM Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
@roberto.cirillo@isti.cnr.it @g.panichi@isti.cnr.it @gianpaolo.coro@isti.cnr.it can I have an answer please?
Can we ...
Andrea Dell'Amico
07:32 PM Task #9551: Some jobs wrote big chunks of data into the persistence jackrabbit table
Some days ago, the DB size increased by almost 10GB in 48 hours. It's been stable again since than, but those increme... Andrea Dell'Amico
07:28 PM Task #10287 (Closed): Schedule downtime for GN DB
The DB was moved to another hypervisor on Nov 22 as scheduled. Now the clients are working correctly. Andrea Dell'Amico
07:24 PM Task #10467 (Closed): I need a way to communicate with the IS from a script
A REST API would be perfect. Otherwise we will need something specific to pass the haproxy configuration data.
Andrea Dell'Amico
06:43 PM Task #8555: Please provide more resource to Redmine
I just removed the plugin on the redmine dev instance, https://redmine-d.d4science.org without any apparent loss of f... Andrea Dell'Amico
11:50 AM Task #8555: Please provide more resource to Redmine
I cannot find a related ticket. There was a spreadsheet with a list of potential plugins at some point, but I cannot ... Andrea Dell'Amico
09:19 AM Task #8555: Please provide more resource to Redmine
Do you remember why we installed the Global Roles plugin. Luca Frosini
04:19 PM Task #10460 (Closed): Upgrade resources for worker[1-3]-hadoop-test.d4science.org
We need to have the same hw resource of the other workers of the cluster Sandro La Bruzzo
03:38 PM Upgrade #10455: D4Research VO upgrade to 4.8.0
**Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** tabulardata2.d4science.org
* **(CNR) DONE** dm-pool-mana...
Roberto Cirillo
12:38 PM Upgrade #10455 (Completed): D4Research VO upgrade to 4.8.0
Roberto Cirillo
03:25 PM Upgrade #10454: FARM VO upgrade to gCube 4.8.0
**Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** tabulardata2.d4science.org
* **(NKUA) DONE** dewn05.madg...
Roberto Cirillo
12:37 PM Upgrade #10454 (Completed): FARM VO upgrade to gCube 4.8.0
Roberto Cirillo
03:04 PM Upgrade #10458 (Planned): D4Science Root VO upgrade to gCube 4.8
Roberto Cirillo
03:00 PM Upgrade #10458: D4Science Root VO upgrade to gCube 4.8
**HostingNode**
* **(CNR) DONE** data.d4science.org
* **(CNR) DONE** data2-d4s.d4science.org
*WHN to upgrade...
Roberto Cirillo
02:50 PM Upgrade #10458 (Completed): D4Science Root VO upgrade to gCube 4.8
Roberto Cirillo
02:44 PM Upgrade #10453: gCubeApps VO upgrade to gCube 4.8.0
**Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** dm-pool-manager-proto.d4science.org
* **(CNR) DONE** ...
Roberto Cirillo
12:34 PM Upgrade #10453 (Completed): gCubeApps VO upgrade to gCube 4.8.0
Roberto Cirillo
12:39 PM Upgrade #10456 (Completed): ParthenosVO VO upgrade to 4.8.0
Roberto Cirillo

Nov 25, 2017

04:57 PM Task #8555: Please provide more resource to Redmine
I just removed the following plugins:
* Advanced roadmap & milestones plugin
* Recurring Tasks (Issues)
* Redmin...
Andrea Dell'Amico
03:40 PM Task #9857 (In Progress): Evacuate the hypervisors from dlib14x to dlib19x
Some VMs have been migrated. Andrea Dell'Amico
12:25 PM Task #10223: Provide machines for FAO course
A working version of the command:
~~~
for i in `ls -l /proc/*/fd/* 2>/dev/null | grep delete | grep tomcat | awk ...
Andrea Dell'Amico

Nov 24, 2017

09:48 PM Task #10223: Provide machines for FAO course
There is a general issue on the DataMiner with the management of some concurrent algorithms, highlighted by a recent ... Gianpaolo Coro
07:13 PM Task #10223 (Closed): Provide machines for FAO course
I'm closing the ticket. Open another one when you feel ready to add them to the cloud1 cluster.
Andrea Dell'Amico
07:14 PM Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
Can anybody give a final answer?
Andrea Dell'Amico
06:00 PM VM Creation #10387 (Closed): Please create a VM to host parthenos-regsitry for pre-production infrastructure
The problem was on the gcube-app.xml configuration file which has a wrong tag name.
@lucio.lelii@isti.cnr.it help ...
Luca Frosini
05:15 PM VM Creation #10387: Please create a VM to host parthenos-regsitry for pre-production infrastructure
We think that the problem is in the configuration because also the version up and running in production has the same ... Luca Frosini
04:47 PM VM Creation #10387: Please create a VM to host parthenos-regsitry for pre-production infrastructure
@lucio.lelii@isti.cnr.it can you investigate too? Luca Frosini
05:14 PM Task #9688 (Closed): handle the applications provisioned using maven_artifact correctly
I'm closing this one. I fixed all the roles but the smart executor plugins ones. They will be modified when the uber ... Andrea Dell'Amico
03:14 PM Task #10440: Please add a smart-executor instance with accounting-insert-rstudio-se-plugin on each RStudio nodes
We could face a problem here: we replicated the users home directories on almost all the rstudio instances. We should... Andrea Dell'Amico
02:53 PM Task #10440 (Rejected): Please add a smart-executor instance with accounting-insert-rstudio-se-plugin on each RStudio nodes
Luca Frosini
03:04 PM Task #10434: Please add accounting-insert-rstudio-se-plugin to quota-plugin.d4science.org smart-executor instance
Yes, fixed the playbook. Andrea Dell'Amico
02:54 PM Task #10434: Please add accounting-insert-rstudio-se-plugin to quota-plugin.d4science.org smart-executor instance
I didn't notice that the plugin has to run on each node where RStudio runs not on quota-plugin.d4science.org as I ind... Luca Frosini
02:38 PM Task #10434 (Closed): Please add accounting-insert-rstudio-se-plugin to quota-plugin.d4science.org smart-executor instance
Up and running. Thanks Luca Frosini
01:24 PM Task #10434 (Feedback): Please add accounting-insert-rstudio-se-plugin to quota-plugin.d4science.org smart-executor instance
Done. Can you check?
Andrea Dell'Amico
01:13 PM Task #10434 (In Progress): Please add accounting-insert-rstudio-se-plugin to quota-plugin.d4science.org smart-executor instance
Andrea Dell'Amico
11:53 AM Task #10434 (Closed): Please add accounting-insert-rstudio-se-plugin to quota-plugin.d4science.org smart-executor instance
Luca Frosini
02:56 PM Task #10439 (Paused): Launch accounting-insert-rstudio-se-plugin
Luca Frosini
02:53 PM Task #10439 (In Progress): Launch accounting-insert-rstudio-se-plugin
Luca Frosini
02:46 PM Task #10439 (Rejected): Launch accounting-insert-rstudio-se-plugin
Luca Frosini
02:41 PM Task #10439 (Closed): Launch accounting-insert-rstudio-se-plugin
The scheduling of the plugin was not present on db for reminiscence. The plugin have to be scheduled manually. Luca Frosini

Nov 23, 2017

07:16 PM Incident #10433 (Closed): couchbase02.d4science.org crashed
Andrea Dell'Amico
07:14 PM Incident #10433 (In Progress): couchbase02.d4science.org crashed
Restarting it right now. Andrea Dell'Amico
07:11 PM Incident #10433 (Closed): couchbase02.d4science.org crashed
The VM crashed. Andrea Dell'Amico
03:21 PM Task #10426 (Closed): new database in dev for storageHub service
Lucio Lelii
02:51 PM Task #10426 (Feedback): new database in dev for storageHub service
Done. Andrea Dell'Amico
02:32 PM Task #10426: new database in dev for storageHub service
workspace db and user:
db: new-ws-repo-dev
user: new-ws-repo-dev-user
workspace cluster journal db and user:
...
Andrea Dell'Amico
02:24 PM Task #10426 (In Progress): new database in dev for storageHub service
Andrea Dell'Amico
11:25 AM Task #10426 (Closed): new database in dev for storageHub service
create a new database in dev for the storageHub service with a copy of the content of the actual workspace repository. Lucio Lelii
01:09 PM Task #10427 (Closed): Rebuild the ip-90-147-167-222.ct1.garrservices.it GARR instance
Done. Andrea Dell'Amico
12:55 PM Task #10427 (Closed): Rebuild the ip-90-147-167-222.ct1.garrservices.it GARR instance
It fails to reboot because of a problem on the hypervisor Andrea Dell'Amico
10:54 AM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
Yes, in case of SVN dependency failure we could add the same information included in the email on the log file. Consi... Giancarlo Panichi

Nov 22, 2017

06:21 PM Task #10147 (Closed): Support varnish as a cache layer in the smartgears nginx
Added a special case for varnish.
Andrea Dell'Amico
06:04 PM Task #10147 (In Progress): Support varnish as a cache layer in the smartgears nginx
Andrea Dell'Amico
06:01 PM Task #10153 (Closed): Support more options in the tomcat server.xml connector configuration
Andrea Dell'Amico
05:40 PM Task #10153 (In Progress): Support more options in the tomcat server.xml connector configuration
Andrea Dell'Amico
04:26 PM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
The current version of DMPM always creates the status file and updates it, and creates the log file only to log the i... Ciro Formisano
04:03 PM VM Creation #10348 (Closed): Installation of Virtuoso Triplestore in the infrastructure
Great thanks
Yannis Marketakis
03:43 PM VM Creation #10348: Installation of Virtuoso Triplestore in the infrastructure
Done. You can reach the service as https://virtuoso-catalogue.d4science.org/ (still no valid certificate).
Andrea Dell'Amico
03:36 PM VM Creation #10348: Installation of Virtuoso Triplestore in the infrastructure
I'm going to add it as a CNAME.
Andrea Dell'Amico
03:32 PM Task #10316 (Closed): Install the new physical hosts
Two new xen dom0, dlib34x and dlib35x, up and running.
Tommaso Piccioli
01:19 PM Task #10223: Provide machines for FAO course
Any progress on this? The deadline was missed already.
Andrea Dell'Amico

Nov 21, 2017

11:19 PM Task #10287: Schedule downtime for GN DB
Scheduled for tomorrow morning (2017-11-22) Andrea Dell'Amico
07:32 PM VM Creation #10387: Please create a VM to host parthenos-regsitry for pre-production infrastructure
The deploy fails with the following exception:
~~~
2017-11-21 19:30:29,757 [localhost-startStop-1] ERROR org.apac...
Andrea Dell'Amico
04:10 PM VM Creation #10387: Please create a VM to host parthenos-regsitry for pre-production infrastructure
You can configure the servive to use the dev instance of orientdb.
In the config file you have to use the root pas...
Luca Frosini
04:08 PM VM Creation #10387: Please create a VM to host parthenos-regsitry for pre-production infrastructure
Issue #10305 has been updated by Tommaso Piccioli.
Status changed from New to In Progress
% Done changed from 0 ...
Luca Frosini
04:01 PM VM Creation #10387 (In Progress): Please create a VM to host parthenos-regsitry for pre-production infrastructure
Luca Frosini
03:59 PM VM Creation #10387 (Closed): Please create a VM to host parthenos-regsitry for pre-production infrastructure
Sorry for the mistake.
Luca Frosini
03:56 PM VM Creation #10387 (Closed): Please create a VM to host parthenos-regsitry for pre-production infrastructure
This ticket has been recreated because I deleted the ticket #10305 for mistake Luca Frosini
07:04 PM Task #8555: Please provide more resource to Redmine
in that case we cannot remove it. Pasquale Pagano
06:53 PM Task #8555: Please provide more resource to Redmine
@pasquale.pagano@isti.cnr.it if we remove scrum2B we remove the sprints. Even we don't use sprints in the proper way,... Luca Frosini
06:14 PM Task #8555: Please provide more resource to Redmine
I believe that any plugin that was installed and then not used intensively can be undeployed.
One that should be ...
Pasquale Pagano
05:57 PM Task #8555: Please provide more resource to Redmine
Luca Frosini wrote:
> Redmine is continuing to degrade. Please find attached the image containing the complete list ...
Andrea Dell'Amico
04:26 PM Task #8555: Please provide more resource to Redmine
Redmine is continuing to degrade. Please find attached the image containing the complete list of installed Redmine pl... Luca Frosini
06:53 PM Task #10377 (Closed): Disable SSL from the pgpool-clustered postgresql instances
Done. Andrea Dell'Amico
06:03 PM Task #10377 (In Progress): Disable SSL from the pgpool-clustered postgresql instances
Just did in the dev cluster. I'm going to do the same in the production one. Andrea Dell'Amico
05:06 PM Upgrade #10074 (Completed): /gcube/preprod upgrade to gCube 4.8.0
Roberto Cirillo
03:52 PM VM Creation #10356 (Closed): Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
Forget the previous comment. The credentials are discovered from IS.
The problem was on orientdb in the database f...
Luca Frosini
11:16 AM VM Creation #10356: Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
The file config.properties needed to get the credentials to connect to database is not present.
@andrea.dellamico@is...
Luca Frosini
11:08 AM VM Creation #10356: Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
The container didn't start correctly. I'm going to investigate it. Luca Frosini
03:14 PM Incident #10373 (Closed): Authorisation service dev and preprod is broken
Massimiliano Assante
12:25 PM Incident #10373 (Feedback): Authorisation service dev and preprod is broken
Andrea Dell'Amico
12:24 PM Incident #10373: Authorisation service dev and preprod is broken
OK, there were a lot of connections from the authorization that were stuck, some lasting 24 hours. I had to kill post... Andrea Dell'Amico
12:24 PM Incident #10373: Authorisation service dev and preprod is broken
it works now Massimiliano Assante
12:09 PM Incident #10373: Authorisation service dev and preprod is broken
The authorisation service is not responding, according to the logs.
~~~
2017-11-21 11:08:40,157 ERROR o.g.c.p.Por...
Massimiliano Assante
12:07 PM Incident #10373: Authorisation service dev and preprod is broken
~~~
2017-11-21 11:06:35,997 ERROR o.g.p.t.SmartGearsPortalValve [http-bio-9090-exec-270,invoke:62][PORTAL] 667919079...
Massimiliano Assante
12:06 PM Incident #10373: Authorisation service dev and preprod is broken
And I don't see any errors in the authorization logs. Can you give any details?
Andrea Dell'Amico
12:04 PM Incident #10373: Authorisation service dev and preprod is broken
Hm. But on one of the servers only. The other one has open connections since yesterday:
~~~
postgres 14025 0.0 ...
Andrea Dell'Amico
12:02 PM Incident #10373: Authorisation service dev and preprod is broken
Wut. Sorry, my fault. I didn't remove a broken script. Andrea Dell'Amico
11:59 AM Incident #10373 (In Progress): Authorisation service dev and preprod is broken
Authorisation service dev and preprod is broken again today Massimiliano Assante
02:20 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
The document has just been amended with information that will be useful to schedule the transferts. Andrea Dell'Amico
02:19 PM Task #10223: Provide machines for FAO course
@lucio.lelii@isti.cnr.it , I checked the packages, I noticed that the sizes are different, so the builds are differen... Giancarlo Panichi
12:10 PM VM Creation #10382 (Feedback): Extend Resources to D-Net Index
The cluster is back on line Andrea Dell'Amico
11:42 AM VM Creation #10382 (In Progress): Extend Resources to D-Net Index
I just destroyed the old VMs and created again with a 250GB volume each.
I'm starting the provisioning right now.
Andrea Dell'Amico
11:34 AM VM Creation #10382 (Closed): Extend Resources to D-Net Index
We need more disk space for the D-Net cluster index.
see ticket #9996
Sandro La Bruzzo
10:31 AM VM Creation #10348: Installation of Virtuoso Triplestore in the infrastructure
Thanks Andrea,
I confirm that virtuoso is up and running properly.
Furthermore, we installed FCT (https://virtuo...
Yannis Marketakis

Nov 20, 2017

08:36 PM Task #10223: Provide machines for FAO course
I do not know if this is important however I noticed that there are different directories in ecocfg:
dm-192-168-10...
Giancarlo Panichi
07:58 PM Task #10223: Provide machines for FAO course
I just checked the version of the Dataminer core libraries in both the installation, and they are the same.
I cannot...
Lucio Lelii
07:08 PM Task #10223: Provide machines for FAO course
@lucio.lelii@isti.cnr.it that log is from the DataMiner not from the script (see the class name).
The R script wri...
Gianpaolo Coro
06:47 PM Task #10223: Provide machines for FAO course
@gianpaolo.coro@isti.cnr.it if you are talking about CMSY_2_FAST, I thing there is an error in the RScript.
It is tr...
Lucio Lelii
01:00 PM Task #10223: Provide machines for FAO course
As the playbook didn't change and from what I can see the algorithms installer is working, I guess it's better that @... Andrea Dell'Amico
07:20 PM VM Creation #10348 (Feedback): Installation of Virtuoso Triplestore in the infrastructure
https://virtuoso-grsf.d4science.org is online. There's no valid X.509 certificate yet, it will be emitted in the next... Andrea Dell'Amico
06:33 PM VM Creation #10348: Installation of Virtuoso Triplestore in the infrastructure
Provisioning in progress. Andrea Dell'Amico
05:41 PM VM Creation #10348: Installation of Virtuoso Triplestore in the infrastructure
hostname and IP address are going to be virtuoso-grsf.d4science.org 146.48.123.160 Andrea Dell'Amico
04:24 PM VM Creation #10348 (In Progress): Installation of Virtuoso Triplestore in the infrastructure
Andrea Dell'Amico
05:57 PM Task #9368 (Closed): JackRabbit Repo cluster over Postgres for development infra
Andrea Dell'Amico
04:04 PM Task #9368: JackRabbit Repo cluster over Postgres for development infra
The infrastructure is in place since months. The cluster features aren't used yet but it's not a matter of configurat... Andrea Dell'Amico
04:44 PM Task #10316: Install the new physical hosts
This task is quite urgent. Is it possible to have the new hardware in place by Wednesday?
Thanks
Pasquale Pagano
03:50 PM VM Creation #8567 (Closed): New VM to host the EFG D-Net service
Andrea Dell'Amico
03:48 PM VM Creation #10361 (Closed): Install a new shinyproxy server
Andrea Dell'Amico
03:48 PM Incident #10372 (Closed): Authorization service: pgpool problem
Andrea Dell'Amico
03:25 PM Incident #10372: Authorization service: pgpool problem
I'm closing the incident. A permanent solution will be provided in #10377 Andrea Dell'Amico
11:54 AM Incident #10372 (Feedback): Authorization service: pgpool problem
The auth service is connected to the pgpool service now. I still need to investigate what's happened. I've found that... Andrea Dell'Amico
11:23 AM Incident #10372 (In Progress): Authorization service: pgpool problem
Andrea Dell'Amico
10:52 AM Incident #10372: Authorization service: pgpool problem

I've tried to restart postgres and pgpool but nothing change. After that, I've tried to perform the procedure to fa...
Roberto Cirillo
10:22 AM Incident #10372: Authorization service: pgpool problem
the error from the authorization service is
~~~
Internal Exception: org.postgresql.util.PSQLException: ERROR: ...
Lucio Lelii
10:18 AM Incident #10372 (Closed): Authorization service: pgpool problem
The pgpool cluster seems to be blocked. I've tried the restore procedure without success. Please, could you take a lo... Roberto Cirillo
02:58 PM Task #10377 (Closed): Disable SSL from the pgpool-clustered postgresql instances
It seems that every problem we've had so far involves the certificate renewals (postgres wants a restart, a reload is... Andrea Dell'Amico
11:46 AM Incident #10373 (Closed): Authorisation service dev and preprod is broken
Massimiliano Assante
10:40 AM Incident #10373 (Closed): Authorisation service dev and preprod is broken
according to @roberto.cirillo@isti.cnr.it and @lucio.lelii@isti.cnr.it the issue is in pgpool Massimiliano Assante
11:30 AM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
Following an offline discussion with @g.panichi@isti.cnr.it and @nunzioandrea.galante@eng.it, it seems that the DMPM... Ciro Formisano

Nov 19, 2017

10:06 PM Task #10223: Provide machines for FAO course
I have just run more than 1000 executions of the CMSY algorithm on dataminer7-p-d4s.d4science.org and I cannot run ev... Gianpaolo Coro
09:38 PM Task #10223: Provide machines for FAO course
Apart from the public/private IP address, there is no other difference between those dataminer and the other GARR one... Andrea Dell'Amico
09:07 PM Task #10223: Provide machines for FAO course
The issue is the following and the logs are plenty of them:
~~~
15:04:46.339 [pool-9-thread-4] DEBUG GenericRScri...
Gianpaolo Coro
07:33 PM Task #10223: Provide machines for FAO course
I checked some of them and I didn't find any tomcat/smartgears related exceptions into the log files.
The dataminer...
Andrea Dell'Amico
04:58 PM VM Creation #10361: Install a new shinyproxy server
We also have a valid certificate now. Andrea Dell'Amico

Nov 18, 2017

02:20 PM Task #10223: Provide machines for FAO course
All the functional tests will be run by Lucio @lucio.lelii@isti.cnr.it on Monday. Meanwhile, for another task I'm run... Gianpaolo Coro

Nov 17, 2017

08:17 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
Anytime is fine with me, but I can speak only for the following VMs
~~~
node5.t.openaire.research-infrastructures...
Claudio Atzori
07:52 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
I see that the document was partially compiled.
We need to know *when* we can restart the production VMs, possibly...
Andrea Dell'Amico
07:24 PM Task #9703 (Closed): wrong software and data distribution on node75.d4science.org
Tommaso Piccioli
07:22 PM Incident #10306 (Closed): mongo3-p-d4s.d4science.org went out of memory more than once
no more connections from portal-si to mongo3.
mongo2-p-d4s and mongo4-p-d4s restarted with 4 GB of ram.
Tommaso Piccioli
05:00 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
Tommaso Piccioli wrote:
> Tommaso Piccioli wrote:
> > portal-si.isti.cnr.it shows established connection on port 27...
Roberto Cirillo
03:42 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
Tommaso Piccioli wrote:
> portal-si.isti.cnr.it shows established connection on port 27017 to all social-isti mongod...
Tommaso Piccioli
06:57 PM Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
@gianpaolo.coro@isti.cnr.it says it must remain?
Andrea Dell'Amico
06:56 PM Incident #10310 (Closed): Rebuild two GARR dataminer VMs
Andrea Dell'Amico
06:43 PM Incident #10345 (Rejected): Gis Viewer does not produce images correctly
Ok, @fabio.sinibaldi@isti.cnr.it, thanks for you reply. I will consider your suggestions in order to reinforce the Ge... Francesco Mangiacrapa
11:59 AM Incident #10345: Gis Viewer does not produce images correctly
Ok, now I understand.
By inspecting the metadata, it seems it is a bit old layer : all publication and creation date...
Fabio Sinibaldi
11:15 AM Incident #10345: Gis Viewer does not produce images correctly
Yes, @fabio.sinibaldi@isti.cnr.it you're right, I presented the problem incorrectly saying 'Thredds side'.
Precisely...
Francesco Mangiacrapa
10:25 AM Incident #10345: Gis Viewer does not produce images correctly
Sorry, but I didn't understand the request :
if the issue is in the ISO metadata we should edit that, which resides...
Fabio Sinibaldi
06:08 PM Task #9576 (Closed): provision the smartgear logback configuration starting from a template
Andrea Dell'Amico
04:01 PM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
The email is sent correctly and contains the issue but the message sent to SAI doesn't. @g.panichi@isti.cnr.it says t... Gianpaolo Coro
03:51 PM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
Thank you for the help Gianpaolo, it has been very important to identify the root cause.
Unluckily I have not so de...
Ciro Formisano
03:16 PM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
My colleague @g.panichi@isti.cnr.it discovered the issue. The "foreach" package was declared as a required package bu... Gianpaolo Coro
03:09 PM Task #10368: DM Pool Manager not working (improvement on the notification mechanism)
Ciro Formisano wrote:
> Please, may you grant me the access to the machine hosting DMPM instance? I need to have a l...
Roberto Cirillo
02:41 PM Task #10368 (In Progress): DM Pool Manager not working (improvement on the notification mechanism)
Please, may you grant me the access to the machine hosting DMPM instance? I need to have a look at the logs and at th... Ciro Formisano
02:32 PM Task #10368 (Feedback): DM Pool Manager not working (improvement on the notification mechanism)
I think this is not a tomcat problem.
I've checked the logs: the file 446642b0-7def-4c4a-b9e9-a1a241088bee is not pr...
Roberto Cirillo
02:30 PM Task #10368 (In Progress): DM Pool Manager not working (improvement on the notification mechanism)

Roberto Cirillo
01:06 PM Task #10368 (Closed): DM Pool Manager not working (improvement on the notification mechanism)
I'm trying to deploy the CMSY_2 algorithm in the RPrototypingLab VRE, but I get this 500 error from the pool manager ... Gianpaolo Coro
03:29 PM Task #10367 (Closed): Distribute a new letsencrypt configuration on all the hosts
Done. I created a small task under library/generic-tasks that only runs the letsencrypt role. I run it on every playb... Andrea Dell'Amico
12:59 PM Task #10367 (In Progress): Distribute a new letsencrypt configuration on all the hosts
Andrea Dell'Amico
12:51 PM Task #10367 (Closed): Distribute a new letsencrypt configuration on all the hosts
letsencrypt changed the TOS, so the client configuration must be changed to obtain new certificates or certificates r... Andrea Dell'Amico
12:31 PM Task #10279 (Closed): Large file upload limit on the workspace
Guys, thank you for your help. I really appreciate it :) Marek Horst
12:29 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> All done.
>
> There is only one file left we need to fix its size: `epmc-meta-20171017.gz`. ...
Costantino Perciante
10:05 AM Task #10279: Large file upload limit on the workspace
All done.
There is only one file left we need to fix its size: `epmc-meta-20171017.gz`. All the other were already...
Marek Horst
11:44 AM VM Creation #10361 (Feedback): Install a new shinyproxy server
You now have both http and https. Still a self signed certificate, right now.
Andrea Dell'Amico
10:21 AM VM Creation #10361 (In Progress): Install a new shinyproxy server
Massimiliano Assante
10:17 AM Task #10366 (Closed): Add ParthenosVO scope to all the dataminer instances
It's needed to add the following scope and the related key in the ansible playbook on every dataminer instances:
~...
Roberto Cirillo
09:50 AM Task #9203 (Closed): Enable access for production EDISON Portal instance
Massimiliano Assante

Nov 16, 2017

09:43 PM Task #10279: Large file upload limit on the workspace
Costantino Perciante wrote:
> I guess nginx closes the connection after a while. @andrea.dellamico@isti.cnr.it cou...
Andrea Dell'Amico
07:00 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> This time I got:
>
> ~~~
> <!DOCTYPE html>
> <html>
> <head>
> <title>Error</title>
> <...
Roberto Cirillo
05:39 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> This time I got:
>
> ~~~
> <!DOCTYPE html>
> <html>
> <head>
> <title>Error</title>
> <...
Costantino Perciante
04:55 PM Task #10279: Large file upload limit on the workspace
This time I got:
~~~
<!DOCTYPE html>
<html>
<head>
<title>Error</title>
<style>
body {
width: 3...
Marek Horst
01:48 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Costantino Perciante wrote:
> > It would be also better to perform a multipart-like post reque...
Costantino Perciante
12:39 PM Task #10279: Large file upload limit on the workspace
Roberto Cirillo wrote:
> Marek Horst wrote:
> > Roberto Cirillo wrote:
> > > Before retry could you try to do a do...
Marek Horst
12:22 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Roberto Cirillo wrote:
> > Before retry could you try to do a double compression of the file l...
Roberto Cirillo
11:48 AM Task #10279: Large file upload limit on the workspace
Costantino Perciante wrote:
> It would be also better to perform a multipart-like post request. Like this:
>
> cu...
Marek Horst
11:44 AM Task #10279: Large file upload limit on the workspace
Roberto Cirillo wrote:
> Before retry could you try to do a double compression of the file like "tar.gz"?
Unfortu...
Marek Horst
09:45 AM Task #10279: Large file upload limit on the workspace
It would be also better to perform a multipart-like post request. Like this:
curl --header "gcube-token:**********...
Costantino Perciante
09:40 AM Task #10279: Large file upload limit on the workspace
Before retry could you try to do a double compression of the file like "tar.gz"? Roberto Cirillo
09:28 AM Task #10279: Large file upload limit on the workspace
I tried to reupload `other-text-20171017.gz` file, this time I got:
~~~
<!DOCTYPE html>
<html>
<head>
<title>E...
Marek Horst
09:33 PM VM Creation #10361 (Closed): Install a new shinyproxy server
Done. We do not have a valid ssh certificate though.
@massimiliano.assante@isti.cnr.it this is the instance to be ...
Andrea Dell'Amico
08:51 PM VM Creation #10361 (In Progress): Install a new shinyproxy server
Andrea Dell'Amico
08:02 PM VM Creation #10361: Install a new shinyproxy server
shinyproxy-nauth1.d4science.org. IN A 146.48.123.122 Andrea Dell'Amico
07:58 PM VM Creation #10361 (Closed): Install a new shinyproxy server
We need a different kind of authentication.
Andrea Dell'Amico
07:51 PM Incident #10345: Gis Viewer does not produce images correctly
Checking with Gianpaolo on this issue We have discovered that the problem is the WMS request stored in the metadata o... Francesco Mangiacrapa
06:15 PM Incident #10345 (In Progress): Gis Viewer does not produce images correctly
Hi Gianpaolo,
analyzing the above link I believe that there is a problem with the field **width** (It is too high)...
Francesco Mangiacrapa
07:10 PM Task #10223: Provide machines for FAO course
@gianpaolo.coro@isti.cnr.it , I did a fast test on some machines and these are the first results. Giancarlo Panichi
06:26 PM Task #10223: Provide machines for FAO course
@lucio.lelii@isti.cnr.it could you run the tests please? The machines are required by tomorrow. Gianpaolo Coro
06:52 PM Task #9703: wrong software and data distribution on node75.d4science.org
Could you please tell me what is doing this node?
If there will be no answer I will shutdown it in 24 hours.
Tommaso Piccioli
05:26 PM VM Creation #10356: Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
The plugin is up and running. The related service endpoint is correctly registered to the infrastructure. Please @luc... Roberto Cirillo
01:16 PM VM Creation #10356 (In Progress): Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
New VM name is quota-plugin.d4science.org Tommaso Piccioli
11:37 AM VM Creation #10356: Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
As far as I understood smart-executor should not be modified. The issue is related to the plugin which has to be pack... Luca Frosini
11:12 AM VM Creation #10356: Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
@luca.frosini@isti.cnr.it is the smart-executor ready to handle the new plugins installation method? Andrea Dell'Amico
04:46 PM Support #10357 (Closed): Support Vector Machines not working
We have switched to the SVMs of Rapid Miner which are equal to the one we were using but it is the "Svm" class instea... Gianpaolo Coro
02:43 PM Support #10357: Support Vector Machines not working
So one way could be to make SVMs use the same lib version of RapidMiner? Gianpaolo Coro
02:10 PM Support #10357: Support Vector Machines not working
It worked in the past only because the svn library integrated in the algortithm was the same version of the one in ra... Lucio Lelii
01:54 PM Support #10357: Support Vector Machines not working
I add that RapidMiner is one of the most important frameworks integrated by the DataMiner (together with Weka), thus ... Gianpaolo Coro
01:32 PM Support #10357: Support Vector Machines not working
No one is. RapidMiner is a third party framework. The current integrated version is 5, the last that was Open Source.... Gianpaolo Coro
12:47 PM Support #10357: Support Vector Machines not working
I'm not the developer of the repidminer jar. I really don't know who is using it in the algorithms and if it can be c... Lucio Lelii
12:40 PM Support #10357 (Closed): Support Vector Machines not working
SVMs are not working on the DataMiner. If this depends on the conflict is in the libsmv inside RapidMiner, this can b... Gianpaolo Coro
04:43 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
last hour news: there are connections to mongod on mongo3-p-d4s.d4science.org from the social-isti portal.
portal-...
Tommaso Piccioli
02:24 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
I think the problem is on mongo3 node. This node has the same configuration and the same workload of mongo2 but the l... Roberto Cirillo
03:36 PM Task #10358 (Closed): Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster
The instance above has been removed from TextCrowd VRE and now it should be integrated into the dataminer-garr cluste... Roberto Cirillo

Nov 15, 2017

07:13 PM VM Creation #10356 (Closed): Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin
The playbook for accounting-insert-storage-se-plugin is available on ansible but it should be modified because previo... Roberto Cirillo
06:46 PM Task #10279: Large file upload limit on the workspace
I've tried to check the integrity with gzip -t and I confirm, the file is not complete. @andrea.dellamico@isti.cnr.it... Roberto Cirillo
06:43 PM Task #10279: Large file upload limit on the workspace
Unfortunately the file named other-text-20171017.gz in the storage layer is 28635607040 so I think it is not complete. Roberto Cirillo
03:55 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Costantino Perciante wrote:
>
> > Please let us know as soon as you finish with them
>
> ...
Marek Horst
12:59 PM Task #10279: Large file upload limit on the workspace
Costantino Perciante wrote:
> Please let us know as soon as you finish with them
The last one (and the largest ...
Marek Horst
11:59 AM Task #10279 (Feedback): Large file upload limit on the workspace
Roberto Cirillo
04:25 PM Task #10351: 404 error of Apache tomcat
The web browser proxies `/ssk` without exception, the 404 is returned by tomcat. It seems that the app does something... Andrea Dell'Amico
03:58 PM Task #10351: 404 error of Apache tomcat
I reproduced the issued, I suspect it is sth about the nginx configuration, I'm reassign the ticket to the sysadmins Massimiliano Assante
03:53 PM Task #10351 (In Progress): 404 error of Apache tomcat
Massimiliano Assante
03:04 PM Task #10351 (Closed): 404 error of Apache tomcat
Hi Massimiliano,
I have an issue on the actual running environment of SSK (http://ssk-application.parthenos.d4scie...
Lionel Tadonfouet
04:25 PM Incident #10306 (In Progress): mongo3-p-d4s.d4science.org went out of memory more than once
I'm reopening it. Let's increase the RAM amount on all the other nodes so that they are identical.
Andrea Dell'Amico
04:08 PM Incident #10306 (Closed): mongo3-p-d4s.d4science.org went out of memory more than once
Thank you @tommaso.piccioli@isti.cnr.it I'm going to close this ticket. Roberto Cirillo
03:04 PM Incident #10306 (In Progress): mongo3-p-d4s.d4science.org went out of memory more than once
Done for mongo3-p-d4s Tommaso Piccioli
02:51 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
I'm going to restart mongo3 with 4GB of ram just now Tommaso Piccioli
02:38 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
Roberto Cirillo wrote:
> it's ok for me. If it's needed only a VM restart you can do it at any time, if it's neede...
Andrea Dell'Amico
02:32 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
Andrea Dell'Amico wrote:
> Roberto Cirillo wrote:
> > It cannot be the cause of the issue #10279 since it is a Seco...
Roberto Cirillo
01:11 PM VM Creation #10348 (Closed): Installation of Virtuoso Triplestore in the infrastructure
So far we have a running triplestore in the infrastructure (http://virtuoso.i-marine.d4science.org:8890).
It is bas...
Yannis Marketakis
09:26 AM Task #10328 (Closed): OpenAIRE datathon schema files
Thanks Andrea! Claudio Atzori
01:04 AM Task #10328 (Feedback): OpenAIRE datathon schema files
If you need to modify/add/whatever file, you can access the directory with the static content using sftp:
~~~
sft...
Andrea Dell'Amico
01:02 AM Task #10328 (In Progress): OpenAIRE datathon schema files
Done. You can access the files at these URLs:
http://datathon.openaire.eu/datathon-schema/oaf-common-1.1.xsd
http...
Andrea Dell'Amico

Nov 14, 2017

06:37 PM Task #10328: OpenAIRE datathon schema files
Let's host the schema files from a static website. Something like the url below will do the job.
~~~
http://datat...
Claudio Atzori
06:12 PM Task #10328: OpenAIRE datathon schema files
Hm. I need to pollute the haproxy configuration to setup explicit URL for each one of those. If they must be hidden i... Andrea Dell'Amico
04:42 PM Incident #10345 (Rejected): Gis Viewer does not produce images correctly
The Gis Viewer stretches the images and does not manage Thrreds layers properly.
Example of the issue and related ...
Gianpaolo Coro
03:04 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Done. I am about to upload 3 more files:
>
> * `epmc-text-20171017.gz` (19GB, ongoing)
> * ...
Costantino Perciante
12:36 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Roberto Cirillo wrote:
> > The file epmc-meta-20171017.gz is present on our storage with the f...
Marek Horst
11:45 AM Task #10279: Large file upload limit on the workspace
Roberto Cirillo wrote:
> The file epmc-meta-20171017.gz is present on our storage with the following size: 875305864...
Marek Horst
11:35 AM Task #10279: Large file upload limit on the workspace
The file epmc-meta-20171017.gz is present on our storage with the following size: 8753058643 bytes.
However this fi...
Roberto Cirillo
10:40 AM Task #10279: Large file upload limit on the workspace
We managed to fix the largest of them (i.e. arxiv-text-20171017.gz); you can now download the entire file.
I kindl...
Costantino Perciante
09:58 AM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Roberto Cirillo wrote:
> >
> > I confirm that the file arxiv-text-20171017.gz is present on...
Marek Horst
09:27 AM Task #10279 (In Progress): Large file upload limit on the workspace
Roberto Cirillo
11:37 AM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
Since information is expected to come from different developers, I'm preparing a google sheet here to collect them : ... Fabio Sinibaldi

Nov 13, 2017

06:46 PM Task #10279: Large file upload limit on the workspace
Roberto Cirillo wrote:
>
> I confirm that the file arxiv-text-20171017.gz is present on our storage. The file siz...
Marek Horst
06:37 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> I managed to upload successfully 8GB file. It took 49 mins.
>
> When I tried to upload 12GB ...
Roberto Cirillo
06:29 PM Task #10279: Large file upload limit on the workspace
Thank you Pasquale.
Tomorrow I will test curl upload against other server to eliminate client side problem. This i...
Marek Horst
06:08 PM Task #10279: Large file upload limit on the workspace
I added few more people from the CNR team to this issue since they are working on the scene to understand the issue. ... Pasquale Pagano
05:22 PM Task #10279: Large file upload limit on the workspace
It seems only the "large enough" files are truncated. Here is the summary of already uploaded files:
|file name|up...
Marek Horst
05:27 PM Task #10328 (Closed): OpenAIRE datathon schema files
Currently I hosted the schema files relative to Dataset #3 in the following directory:
https://goo.gl/e5HwxJ
Is...
Claudio Atzori
03:22 PM Task #10263 (Closed): Chrome non-passive event listener issue on liked posts of VRE Parthenos
Added fix to the release Massimiliano Assante
12:16 PM Task #10317 (Closed): Increase the resources of dataminer[1:5]-p-d4s.d4science.org

RAM and CPU must be increased to 32GB and 16, respectively. This means that at least three of the VMs have to be mo...
Andrea Dell'Amico
12:11 PM Task #10316 (Closed): Install the new physical hosts
We need more resource, so we cannot wait anymore.
They must be installed as the other ones, because to successfully ...
Andrea Dell'Amico
11:46 AM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
Roberto Cirillo wrote:
> It cannot be the cause of the issue #10279 since it is a Secondary member and the writing a...
Andrea Dell'Amico
11:36 AM Incident #10306 (Feedback): mongo3-p-d4s.d4science.org went out of memory more than once
It cannot be the cause of the issue #10279 since it is a Secondary member and the writing are done on the primary mem... Roberto Cirillo
11:30 AM Incident #10306 (In Progress): mongo3-p-d4s.d4science.org went out of memory more than once
Roberto Cirillo

Nov 12, 2017

03:36 PM Incident #10310 (Feedback): Rebuild two GARR dataminer VMs
ip-90-147-167-180.ct1.garrservices.it has been provisioned too.
Andrea Dell'Amico
03:17 PM Incident #10310: Rebuild two GARR dataminer VMs
ip-90-147-167-230.ct1.garrservices.it has been provisioned.
Andrea Dell'Amico
02:55 PM Incident #10310: Rebuild two GARR dataminer VMs
The VMs have been started, and the original public IP address associated to them. Andrea Dell'Amico
02:54 PM Incident #10310 (In Progress): Rebuild two GARR dataminer VMs
The VMs are:
~~~
ip-90-147-167-230.ct1.garrservices.it
ip-90-147-167-180.ct1.garrservices.it (this one is a gene...
Andrea Dell'Amico
02:52 PM Incident #10310 (Closed): Rebuild two GARR dataminer VMs
They fail to restart because of `file system full` on the hypervisor.
Andrea Dell'Amico

Nov 11, 2017

04:18 PM Task #10240: Install a modern virtualisation framework to host the 'corporate' services
A link that explains a scenario that we can implement: https://ovirt.org/documentation/gluster-hyperconverged/Gluster... Andrea Dell'Amico

Nov 10, 2017

06:44 PM Task #10261 (Closed): Move to /data nginx temporary files for all Workspace repository nodes
Andrea Dell'Amico
06:44 PM Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once
Could it be related to #10279?
Andrea Dell'Amico
06:42 PM Incident #10306 (Closed): mongo3-p-d4s.d4science.org went out of memory more than once
I see that it was OOMed, and restarted after that. There are nagios alerts about the sync lag, that follow the restar... Andrea Dell'Amico
04:01 PM Upgrade #10073: D4Science Infrastructure Upgrade to gCube 4.8.0
due to changes in a related task Massimiliano Assante
03:10 PM Task #10223 (Feedback): Provide machines for FAO course
Done. The hosts that answer to the `dataminer.garr.d4science.org` hostname are now
~~~
- { ip: '192.168.100.3',...
Andrea Dell'Amico
03:02 PM Task #10223: Provide machines for FAO course
Yes, go on please. Gianpaolo Coro
02:27 PM Task #10223: Provide machines for FAO course
When you confirm that hostname=dm-192-168-100-104.garr.d4science.org can be excluded from the `dataminer.garr.d4scien... Andrea Dell'Amico
12:32 PM Task #10223 (In Progress): Provide machines for FAO course
Andrea, in order to run our tests we need those machines behind one dedicated cluster. Currently, there is at least a... Gianpaolo Coro
02:13 PM Task #10279: Large file upload limit on the workspace
Pasquale Pagano wrote:
> Dear @marek.horst@gmail.com, today there is a strike in Italy and more than half of the CNR...
Marek Horst
02:05 PM Task #10279: Large file upload limit on the workspace
Dear @marek.horst@gmail.com, today there is a strike in Italy and more than half of the CNR personnel is on strike. I... Pasquale Pagano
01:14 PM Task #10279: Large file upload limit on the workspace
The command I am using at my machine is the following:
~~~
curl --header "Transfer-Encoding: chunked" --header "g...
Marek Horst
12:54 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> Btw, right now I am uploading epmc-meta-20171017.gz file (8GB) to:
>
> ~~~
> /Workspace/VRE...
Marek Horst
12:51 PM Task #10279: Large file upload limit on the workspace
Btw, right now I am uploading epmc-meta-20171017.gz file (8GB) to:
~~~
/Workspace/VRE Folders/1st_OpenAIRE_Datath...
Marek Horst
12:44 PM Task #10279: Large file upload limit on the workspace
Marek Horst wrote:
> The thing is as soon as I got to:
> ~~~
> 247 MB of 247 MB
> ~~~
> the download speed plumm...
Marek Horst
12:38 PM Task #10279: Large file upload limit on the workspace
Pasquale Pagano wrote:
> @marek.horst@gmail.com, have you tried to refresh the workspace to see if the dimension is ...
Marek Horst
12:21 PM Task #10279: Large file upload limit on the workspace
@marek.horst@gmail.com, have you tried to refresh the workspace to see if the dimension is correct? The file dimensio... Pasquale Pagano
09:46 AM Task #10279: Large file upload limit on the workspace
@costantino.perciante@isti.cnr.it @roberto.cirillo@isti.cnr.it do you find any error on the worskpace?
Andrea Dell'Amico
09:34 AM Task #10279: Large file upload limit on the workspace
I managed to upload successfully 8GB file. It took 49 mins.
When I tried to upload 12GB file (arxiv-text-20171017....
Marek Horst
12:24 PM Task #10303: TextCrowd DataMiner service - Errors with HAProxy and virtual hosts
To overcome the problem, only that machine:
dm-192-168-100-104.garr.d4science.org
is added to VRE to remedy th...
Giancarlo Panichi
12:06 PM Task #10303: TextCrowd DataMiner service - Errors with HAProxy and virtual hosts
As reported in this ticket:
https://support.d4science.org/issues/10058
there should be only one machine here:
...
Giancarlo Panichi
11:28 AM Task #10303 (Closed): TextCrowd DataMiner service - Errors with HAProxy and virtual hosts
It looks like that some dataminers have been added to the TextCrowd cluster, but these machines are not all properly ... Giancarlo Panichi
10:58 AM Task #10273: DataMiner algorithms local testing
We may have found a solution, in any case this is not urgent anymore. It's up to Lucio to decide whether to close the... Paolo Scarponi

Nov 09, 2017

07:26 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
At all involved: please report what of these VMs can be migrated without risks, and which ones need a scheduled downt... Andrea Dell'Amico
07:14 PM Task #9857: Evacuate the hypervisors from dlib14x to dlib19x
List of VMs to be migrated:
dlib14x
auth1.research-infrastructures.eu
dlib01.isti.cnr.it
node24.p.d4scien...
Tommaso Piccioli
07:01 PM Task #10287 (Closed): Schedule downtime for GN DB
The GN spatialIndex hosted on geonetwork_rel_4.1@geoserver-db.d4science.org seems to be in a incoherent state accordi... Fabio Sinibaldi
06:38 PM Task #10273: DataMiner algorithms local testing
@lucio.lelii@isti.cnr.it you know that this algorithm is not developed by me. @scarponi@isti.cnr.it is evaluating th... Giancarlo Panichi
05:30 PM Task #10273: DataMiner algorithms local testing
@g.panichi@isti.cnr.it try it on proto and let me know. In case it doesn't work reassign the ticket to me Lucio Lelii
05:23 PM Task #10273: DataMiner algorithms local testing
can we rebuild the rapidminer-custom jar with an up-to-date version of libsvm? Pasquale Pagano
05:21 PM Task #10273: DataMiner algorithms local testing
A simple solution could be to implement the algorithm as Java Black-Box using the SAI Giancarlo Panichi
05:02 PM Task #10273: DataMiner algorithms local testing
I have found the problem. An old version of libsvm is embedded in the rapidminer-custom jar. With the dynamic classlo... Lucio Lelii
12:37 PM Task #10273 (In Progress): DataMiner algorithms local testing
Lucio Lelii
05:25 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Nicolas Longépé wrote:
> What is the user login for the sftp to static-web.d4science.org for the Aquaculture Atlas ?...
Andrea Dell'Amico
03:09 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
What is the user login for the sftp to static-web.d4science.org for the Aquaculture Atlas ? aaps ?
Nicolas Longépé
03:01 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
I added @nlongepe@cls.fr 's key. Andrea Dell'Amico
02:49 PM Task #10223: Provide machines for FAO course
So, I'll wait for some tests before adding them to the cloud1 backend. Andrea Dell'Amico
02:42 PM Task #10279 (Feedback): Large file upload limit on the workspace
Andrea Dell'Amico
02:40 PM Task #10279 (In Progress): Large file upload limit on the workspace
I increased it to 50GB in the workspace nginx configuration. Andrea Dell'Amico
02:08 PM Task #10279 (Closed): Large file upload limit on the workspace
I'm trying to upload large files (up to 20Gb each) on the OpenAIRE datathon workspace using the curl command describe... Claudio Atzori
02:41 PM VRE #9911 (Released): Create a VRE for 1st OpenAIRE Datathon
Massimiliano Assante
02:40 PM VRE #9911 (Available): Create a VRE for 1st OpenAIRE Datathon
Massimiliano Assante
02:39 PM VRE #9911 (Planned): Create a VRE for 1st OpenAIRE Datathon
Massimiliano Assante
01:06 PM Upgrade #10277 (In Progress): D4Science Preprod Gateway upgrade to gCube 4.8.0
Massimiliano Assante
01:04 PM Upgrade #10277 (Planned): D4Science Preprod Gateway upgrade to gCube 4.8.0
Massimiliano Assante
01:01 PM Upgrade #10277 (Completed): D4Science Preprod Gateway upgrade to gCube 4.8.0
Massimiliano Assante
01:06 PM Upgrade #10278 (Planned): D4Science Gateways upgrade to gCube 4.8.0
Massimiliano Assante
01:03 PM Upgrade #10278 (Completed): D4Science Gateways upgrade to gCube 4.8.0
The following custom fields must be added to the Site class.
Tabname
Key: TabName
as Group of Text Values
Tab...
Massimiliano Assante
12:51 PM Upgrade #10074 (In Progress): /gcube/preprod upgrade to gCube 4.8.0
Roberto Cirillo
12:50 PM Upgrade #10074 (Planned): /gcube/preprod upgrade to gCube 4.8.0
Roberto Cirillo
11:11 AM VRE #10151: PerformFish VRE
You re now manager Massimiliano Assante
11:09 AM VRE #10151: PerformFish VRE
I need to be manager of the VRE and have access to the accounting. People are subscribing. Gianpaolo Coro

Nov 08, 2017

09:54 PM Task #5447 (Closed): Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
@andrea.dellamico@isti.cnr.it Forget about my last comments, yet another weird behavior on chrome that is fixed appar... Emmanuel Blondel
08:12 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
I don't know how to help you on this. I made another check and the main page looks always identical to me on every br... Andrea Dell'Amico
07:59 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Ok....apparently Chrome has other weird stuffs, it seems that on D4science default page zooming was on 90% (??!?). I ... Emmanuel Blondel
07:52 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Look at at what I see on my browser. On IRD host it looks exactly as what i develop in localhost, on d4science it's l... Emmanuel Blondel
07:10 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Sorry, I can't spot any differences. Screenshots attached. Andrea Dell'Amico
04:18 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
the entire body of the web-page. Working with Chrome here, same happens on Firefox. Emmanuel Blondel
04:15 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Hm. Where? I don't see any difference on the *browse* and *query* output (safari on OSX, I can test other browsers la... Andrea Dell'Amico
04:01 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
@andrea.dellamico@isti.cnr.it i've uploaded the current tuna atlas prototype here: https://tunaatlas.d4science.org/tu... Emmanuel Blondel
12:37 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Thanks Andrea, now it works. Emmanuel Blondel
11:52 AM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Sorry, my bad. When I added the user for aquacultureatlas a ssh configuration was reset to an incorrect value. I just... Andrea Dell'Amico
10:45 AM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Thanks @andrea.dellamico@isti.cnr.it I've tried to connect through PAIM and TunaAtlas without success. I'm using the ... Emmanuel Blondel
07:25 PM Task #10274: The IRDTunaAtlas R package does not build anymore
Hi Julien @julien.barde@ird.fr, the GitHub package "juldebar/IRDTunaAtlas" was requested to be installed on our machi... Gianpaolo Coro
07:18 PM Task #10274: The IRDTunaAtlas R package does not build anymore
Its compilation sometimes get stuck too, so the process must be killed manually. If it isn't needed anymore, can we r... Andrea Dell'Amico
07:15 PM Task #10274 (Closed): The IRDTunaAtlas R package does not build anymore
Since a long time, apparently. The error log:
~~~
'/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-r...
Andrea Dell'Amico
07:24 PM Task #10272 (Closed): Script that updates the R packages: kill the old instances if they become stuck
It's working. It will be installed everywhere at the next upgrade.
Andrea Dell'Amico
06:52 PM Task #10272 (Feedback): Script that updates the R packages: kill the old instances if they become stuck
Need to test it in dev. I also added a check that skips the procedure if nothing changed in the SVN repository.
Andrea Dell'Amico
06:49 PM Task #10272 (In Progress): Script that updates the R packages: kill the old instances if they become stuck
Andrea Dell'Amico
06:33 PM Task #10272 (Closed): Script that updates the R packages: kill the old instances if they become stuck
The build of some R packages sometimes get stuck and the update script must be manually killed. Andrea Dell'Amico
07:23 PM Support #10259 (Closed): TwitterMonitor plugins installation on twittermon1 production VM
It works. Salvatore Minutoli
03:56 PM Support #10259 (Feedback): TwitterMonitor plugins installation on twittermon1 production VM
The plugins have been upgraded as requested. Please, check the service and close the ticket if it works fine. Roberto Cirillo
03:48 PM Support #10259 (In Progress): TwitterMonitor plugins installation on twittermon1 production VM
Hi Salvatore, the smart-executor libraries are also upgraded to the last version. I'm going to upgrade the twittermon... Roberto Cirillo
01:35 PM Support #10259 (Closed): TwitterMonitor plugins installation on twittermon1 production VM
Could you please install the new version of TwitterMonitor plugins on the twittermon1 VM?
The smart executor librari...
Salvatore Minutoli
06:44 PM Task #10273 (Closed): DataMiner algorithms local testing
Local machine testing of DM algorithms does not work anymore. Further, there are sudden issues now on the Support Vec... Gianpaolo Coro
06:42 PM Task #10223: Provide machines for FAO course
I think that it is a good idea to increase the capacities of the cloud1 cluster but please consider that tomorrow the... Pasquale Pagano
04:55 PM Task #10223: Provide machines for FAO course
No probl, but should'nt it better thest them before? I'm confident that they are OK, but at least some minimal test w... Andrea Dell'Amico
04:05 PM Task #10223: Provide machines for FAO course
Since the course will be made in the StockAssessment VRE, the machines should be assigned to the cloud1 cluster. Gianpaolo Coro
03:40 PM Task #10223 (Feedback): Provide machines for FAO course
Can anybody check them?
Andrea Dell'Amico
03:24 PM Task #10223: Provide machines for FAO course
The VMs have been provisioned. I'm making them available as single nodes and to the `dataminer.garr.d4science.org` cl... Andrea Dell'Amico
05:41 PM Task #10270 (Closed): Configure the xen hypervisor to let the guests talk to the storage network
The VMs should be able to talk to the storage network, it's mandatory so that we can host the Ceph monitors in the hy... Andrea Dell'Amico
04:18 PM Task #10264 (Closed): Add /data as separate file system on workspace-repository-prod.d4science.org
The VM is not in use yet, but we will need a temporary storage to manage big uploads.
Andrea Dell'Amico
04:10 PM Support #10222 (Closed): re-install latest version of dataminer gost on dev environment
Everything works now, thank you Ciro Formisano
11:31 AM Support #10222: re-install latest version of dataminer gost on dev environment
yes because the problematic algorithm was in svn and have been reupdated, I have removed it from the svn folder, plea... Lucio Lelii
11:15 AM Support #10222 (In Progress): re-install latest version of dataminer gost on dev environment
Unluckily I still don't see the algorithms list (http://dataminer-ghost-d.dev.d4science.org/wps/WebProcessingService... Ciro Formisano
11:04 AM Support #10222 (Feedback): re-install latest version of dataminer gost on dev environment
There are one or more algorithms that create the problem, now it is solved (I have removed the MPA* algorithms) but i... Lucio Lelii
04:07 PM Task #10261 (Feedback): Move to /data nginx temporary files for all Workspace repository nodes
Done.
nginx was reloaded and not restarted, so the running upload will fail.
The nginx temporary directory is `...
Andrea Dell'Amico
03:43 PM Task #10261 (In Progress): Move to /data nginx temporary files for all Workspace repository nodes
Andrea Dell'Amico
02:47 PM Task #10261 (Closed): Move to /data nginx temporary files for all Workspace repository nodes
Massimiliano Assante
04:00 PM Incident #10262 (Closed): Cannot see who liked posts on VREs of Parthenos
Issue #10263 created to fix this incident Massimiliano Assante
03:57 PM Incident #10262: Cannot see who liked posts on VREs of Parthenos
Thanks, reproduced.
Chrome complains about non-passive event listener. Will investigate, still unclear why is hap...
Massimiliano Assante
03:48 PM Incident #10262: Cannot see who liked posts on VREs of Parthenos
For example this one: https://parthenos.d4science.org/group/parthenos-gateway?oid=e9e69d4f-b198-4547-8877-46f741df9c7... Alessia Bardi
03:36 PM Incident #10262 (In Progress): Cannot see who liked posts on VREs of Parthenos
Cannot reproduce, can you elaborate more? Which is the post not showing like? All? What browser are you using? Massimiliano Assante
03:32 PM Incident #10262 (Closed): Cannot see who liked posts on VREs of Parthenos
When one clicks to see who liked a post, usually a small window appear with the list of users.
This is not happeni...
Alessia Bardi
03:59 PM Task #10263 (Closed): Chrome non-passive event listener issue on liked posts of VRE Parthenos
Chrome complains about non-passive event listener. Will investigate, still unclear why is happening on Parthenos VRE ... Massimiliano Assante
03:58 PM Support #10260 (Closed): access to dataminer-ghost-d.dev.d4science.org
Done. Andrea Dell'Amico
03:55 PM Support #10260 (In Progress): access to dataminer-ghost-d.dev.d4science.org
Andrea Dell'Amico
02:43 PM Support #10260 (Closed): access to dataminer-ghost-d.dev.d4science.org
Please, may you give me access to dataminer-ghost-d.dev.d4science.org on dev infra? Ciro Formisano
12:08 PM Support #10206 (Closed): Error calling WorkspaceFolder.exists function
Salvatore Minutoli wrote:
> Ok. So each user can have more than one workspace depending on the infrastructure and th...
Costantino Perciante
11:47 AM Support #10206: Error calling WorkspaceFolder.exists function
Ok. So each user can have more than one workspace depending on the infrastructure and the scope.
Can you confirm tha...
Salvatore Minutoli
11:24 AM Task #10239 (Closed): Workspace Dev - Problems with the file copy operation
Giancarlo Panichi
11:23 AM Task #10239 (In Progress): Workspace Dev - Problems with the file copy operation
Now it seems to work Giancarlo Panichi
11:11 AM Task #10239 (Feedback): Workspace Dev - Problems with the file copy operation
Lucio Lelii
11:10 AM Task #10239 (In Progress): Workspace Dev - Problems with the file copy operation
Lucio Lelii

Nov 07, 2017

07:17 PM Task #10223 (In Progress): Provide machines for FAO course
IP and hostnames below, I'll configure them tomorrow. To what cluster do they must be associated? cloud1, with the ot... Andrea Dell'Amico
07:11 PM Support #10206: Error calling WorkspaceFolder.exists function
Yep, but the files were created in the development infrastructure (https://next.d4science.org/group/next/workspace)
...
Costantino Perciante
06:48 PM Support #10206: Error calling WorkspaceFolder.exists function
You are right about the file names. They are both out_000.res .
However I don't see them in the workspace.
Am I l...
Salvatore Minutoli
06:22 PM Support #10206: Error calling WorkspaceFolder.exists function
Salvatore Minutoli wrote:
> I used the code suggested by @costantino.perciante@isti.cnr.it in which I substituted 'g...
Costantino Perciante
05:30 PM Support #10206: Error calling WorkspaceFolder.exists function
I used the code suggested by @costantino.perciante@isti.cnr.it in which I substituted 'getHome()' with 'getHome('user... Salvatore Minutoli
04:49 PM Support #10206: Error calling WorkspaceFolder.exists function
Salvatore Minutoli wrote:
> I need to reload the TwMonCrawler plugin on node19 VM.
Done
Roberto Cirillo
03:44 PM Support #10206: Error calling WorkspaceFolder.exists function
I need to reload the TwMonCrawler plugin on node19 VM. Salvatore Minutoli
10:39 AM Support #10206: Error calling WorkspaceFolder.exists function
I've reinstalled the plugins on node19 and twittermon1 VMs. Roberto Cirillo
06:38 PM Task #10239: Workspace Dev - Problems with the file copy operation
Server side exception may be helpful
~~~
18:36:23.371 [catalina-exec-7] ERROR JCRWorkspaceItem: Error adding meta...
Costantino Perciante
04:09 PM Task #10239: Workspace Dev - Problems with the file copy operation
I see this log on dev portal:
http://paste.research-infrastructures.eu/index.php?id=20171107143831_20263
Giancarlo Panichi
04:02 PM Task #10239 (Closed): Workspace Dev - Problems with the file copy operation
Workspace Dev - Problems with the file copy operation Giancarlo Panichi
05:59 PM Support #10222: re-install latest version of dataminer gost on dev environment
@lucio.lelii@isti.cnr.it, may you complete this activity by reinstalling the algorithms? I need the gost to complete ... Ciro Formisano
05:30 PM Task #10237: Please raise the timeout-limit of virtuoso.parthenos.d4science.org
Matej please verify that he query runs now and close the ticket if ok. Massimiliano Assante
05:27 PM Task #10237 (Feedback): Please raise the timeout-limit of virtuoso.parthenos.d4science.org
Andrea Dell'Amico
05:26 PM Task #10237 (In Progress): Please raise the timeout-limit of virtuoso.parthenos.d4science.org
I just increased the MaxQueryExecutionTime value to 1000 seconds.
Andrea Dell'Amico
04:03 PM Task #10237: Please raise the timeout-limit of virtuoso.parthenos.d4science.org
From the related ticket it seems that the transaction timeout must be increased: http://docs.openlinksw.com/virtuoso/... Andrea Dell'Amico
02:43 PM Task #10237 (Closed): Please raise the timeout-limit of virtuoso.parthenos.d4science.org
The Virtuoso instance responds to https://virtuoso.parthenos.d4science.org Massimiliano Assante
04:35 PM Task #10240 (Closed): Install a modern virtualisation framework to host the 'corporate' services
And the project related services, until we can experiment with OpenStack/Kubernetes.
oVirt https://ovirt.org is th...
Andrea Dell'Amico
04:26 PM Task #9942: Change the way to generate the logback.xml in smartgears container
Any news on this? Andrea Dell'Amico
04:24 PM Task #9933 (Closed): Allow to change identity of resource-registry in resource_registry_parthenos ansible playbook
Andrea Dell'Amico
03:34 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Done. There's no ssl certificate yet for aquacultureatlas.d4science.org.
Andrea Dell'Amico
01:58 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Thanks a lot Andrea, could you please create a separate workspace available for 'aquacultureatlas' and give me access... Emmanuel Blondel
12:52 PM Task #5447 (Feedback): Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
You can now connect via sftp to static-web.d4science.org, this way:
~~~
sftp paim@static-web.d4science.org
sftp ...
Andrea Dell'Amico
12:32 PM VM Creation #10208 (Closed): A VM to host the PAIM static web applications
The VM is ready, we do not have a valid certificate yet.
ssh has been setup so that the users that belong to the `...
Andrea Dell'Amico
12:15 AM VM Creation #10208: A VM to host the PAIM static web applications
The playbook is ready (last famous words).
Andrea Dell'Amico

Nov 06, 2017

06:16 PM Support #10206: Error calling WorkspaceFolder.exists function
@roberto.cirillo@isti.cnr.it could you check it? Thanks Costantino Perciante
06:08 PM Support #10206: Error calling WorkspaceFolder.exists function
Sorry, there was an error in my previous code.
I updated the TwMonCrawler plugin.
Can you reinstall the plugin on n...
Salvatore Minutoli
03:24 PM Support #10206 (Feedback): Error calling WorkspaceFolder.exists function
The plugins have been reinstalled as requested. Roberto Cirillo
02:48 PM Support #10206: Error calling WorkspaceFolder.exists function
I updated the code using the code you suggested and I'm going to test the plugin. Note however that the plugin uses a... Salvatore Minutoli
06:16 PM Task #10058 (Closed): TextCrowd - the new prototyping environment
Thanks @g.panichi@isti.cnr.it I'm going to close this ticket. Roberto Cirillo
06:04 PM Task #10058 (In Progress): TextCrowd - the new prototyping environment
@roberto.cirillo@isti.cnr.it, after you've added the SAI resource now it seems to work.
DataMiner works properly.
Giancarlo Panichi
03:43 PM Task #10058: TextCrowd - the new prototyping environment
I've changed the DMScheduler settings of dm-192-168-100-104.garr.d4science.org (dataminer instance deployed on TextCr... Roberto Cirillo
12:44 PM Task #10058 (Feedback): TextCrowd - the new prototyping environment
I've successfully added the dm-pool-manager instance and the dm-ghost instance so the new prototyping environment sho... Roberto Cirillo
12:41 PM Task #10058 (In Progress): TextCrowd - the new prototyping environment

Roberto Cirillo
12:14 PM Task #10058: TextCrowd - the new prototyping environment
I've added the Dataminer service endpoint resource. Now, it's needed to share the ghost instance and the dm-pool-mana... Roberto Cirillo
06:09 PM Task #10229 (Closed): Do not restart the postgresql instances of a pgpool cluster at the same time
Added a random sleep before the service restart.
Andrea Dell'Amico
06:07 PM Task #10229 (Closed): Do not restart the postgresql instances of a pgpool cluster at the same time
After a certificate renewal, postgresql needs a full restart because a reload is not sufficient.
If all the instance...
Andrea Dell'Amico
05:45 PM Support #10222: re-install latest version of dataminer gost on dev environment
@lucio.lelii@isti.cnr.it is going to investigate. Andrea Dell'Amico
05:34 PM Support #10222 (In Progress): re-install latest version of dataminer gost on dev environment
The problem is still there: @lucio.lelii@isti.cnr.it suggests to update also the algorithms. Please refer to him for ... Ciro Formisano
04:54 PM Support #10222 (Closed): re-install latest version of dataminer gost on dev environment
Done.
Andrea Dell'Amico
04:53 PM Support #10222 (In Progress): re-install latest version of dataminer gost on dev environment
Andrea Dell'Amico
04:51 PM Support #10222: re-install latest version of dataminer gost on dev environment
To be brief, the service does not work any more after some interventions whose details @lucio.lelii@isti.cnr.it knows... Ciro Formisano
04:46 PM Support #10222: re-install latest version of dataminer gost on dev environment
What problems? Andrea Dell'Amico
04:40 PM Support #10222 (Closed): re-install latest version of dataminer gost on dev environment
Dear Andrea,
since we had some strange problems on dev dataminer gost, may you re-install its latest version by usin...
Ciro Formisano
05:36 PM Task #10223: Provide machines for FAO course
We can create 11 full sized dataminers at most, before reaching our quota memory limit. Andrea Dell'Amico
05:12 PM Task #10223 (Closed): Provide machines for FAO course
Between 21-24 Nov. FAO will do a course using the infrastructure and running CMSY. Since this is a highly demanding p... Gianpaolo Coro
02:37 PM Support #10214 (Closed): access to dm-pool-manager-dev.d4science.org
Done. Andrea Dell'Amico
01:14 PM Support #10214 (Closed): access to dm-pool-manager-dev.d4science.org
Please, may I get access to the VM dm-pool-manager-dev.d4science.org of dev infrastructure? Ciro Formisano
01:54 PM VRE #10151: PerformFish VRE
Stat. Alg. Importer tab removed Massimiliano Assante
01:52 PM VRE #10151: PerformFish VRE
@massimiliano.assante@isti.cnr.it , Could you please remove the Stat. Alg. Importer tab from the VRE? Since there is ... Gianpaolo Coro
01:53 PM VM Creation #10208 (In Progress): A VM to host the PAIM static web applications
static-web.d4science.org 146.48.123.62 Andrea Dell'Amico
12:48 PM Task #10127 (Rejected): Ansible: clean the smartgears state if the scope change
This problem happened only with the old smartgears version. With the new Smartgears version it's working fine.
I've ...
Roberto Cirillo
12:09 PM VM Creation #10060 (Closed): TextCrowd DataMiner - create a new DataMiner instance for TextCrowd
Andrea Dell'Amico wrote:
> Roberto Cirillo wrote:
> > I'm going to install the smartgears container and the datamin...
Roberto Cirillo
11:57 AM VM Creation #10060: TextCrowd DataMiner - create a new DataMiner instance for TextCrowd
Roberto Cirillo wrote:
> I'm going to install the smartgears container and the dataminer instance
Why? they are i...
Andrea Dell'Amico
11:55 AM VM Creation #10060: TextCrowd DataMiner - create a new DataMiner instance for TextCrowd
Sorry, my fault. I just need to configure my ssh. Roberto Cirillo
11:34 AM VM Creation #10060: TextCrowd DataMiner - create a new DataMiner instance for TextCrowd
I've tried to access on that VM by public hostname (dm-192-168-100-104.garr.d4science.org) but this VM has only 2GB o... Roberto Cirillo
11:30 AM VM Creation #10060: TextCrowd DataMiner - create a new DataMiner instance for TextCrowd
I'm going to install the smartgears container and the dataminer instance Roberto Cirillo
09:30 AM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Thanks @andrea.dellamico@isti.cnr.it , would it possible to have similar for Tuna Atlas? reachable on https(s)://tuna... Emmanuel Blondel
 

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