Activity

From Jun 25, 2016 to Jul 24, 2016

Jul 24, 2016

02:30 PM Task #4782: Provide ansible playbook for dataminer deployment: I've just added the following files:
~~~
52n-wps-algorithm-3.5.0.jar
52n-wps-commons-3.5.0.jar
52n-wps-database... Andrea Dell'Amico

Jul 23, 2016

02:00 AM Task #4782: Provide ansible playbook for dataminer deployment: The 3:6 services are not running because there are 52North WPS 3.5.0 libraries together with the (required) 3.3.2 lib... Gianpaolo Coro

Jul 22, 2016

04:58 PM Task #4640 (In Progress): Dismiss BiOnym apps: Massimiliano Assante
04:58 PM Task #4450 (Closed): Modify the Email Notification sent over new user registrations: Massimiliano Assante
04:58 PM Task #4450 (In Progress): Modify the Email Notification sent over new user registrations: Massimiliano Assante
04:57 PM Task #4723 (Closed): smartgears configuration: handle the case where a smartgears must run without a VO: It works.
Andrea Dell'Amico
04:56 PM Task #4782: Provide ansible playbook for dataminer deployment: A couple of notes:
~~~
dataminer1-p-d4s.d4science.org
dataminer2-p-d4s.d4science.org
~~~
will be upgraded ne... Andrea Dell'Amico
04:31 PM Task #4782 (Feedback): Provide ansible playbook for dataminer deployment: Roberto Cirillo
09:59 AM Task #4782 (In Progress): Provide ansible playbook for dataminer deployment: Roberto Cirillo
09:36 AM Task #4782 (Closed): Provide ansible playbook for dataminer deployment: Provide an ansible playbook that deploys the dataminer instances in production environment:
~~~
dataminer1-p-d4s.... Roberto Cirillo
02:23 PM Task #4606 (Closed): Geonetwork dev 64 bit: Andrea Dell'Amico
02:22 PM Task #205 (In Progress): Automate the installation and configuration of the geonetwork servers: Work in progress. See also #4606 Andrea Dell'Amico
02:19 PM Task #183 (In Progress): tomcat running as root user under port 80: tomcat instances still running as root:
* wps.statistical.d4science.org
* the geonetworks (there's a dev installa... Andrea Dell'Amico
02:13 PM Task #4771 (Closed): Run smartgears on the rstudio-server instances as unprivileged user: Working correctly in production too.
Andrea Dell'Amico
01:12 PM Task #4771: Run smartgears on the rstudio-server instances as unprivileged user: I provisioned the production instance too, in the same way. I also changed the home directory permissions for the exi... Andrea Dell'Amico
02:04 PM Task #4783 (Closed): Please create new email account for sobigdata gateway: Done Tommaso Piccioli
01:56 PM Task #4783 (Closed): Please create new email account for sobigdata gateway: sobigdata@d4science.org Massimiliano Assante

Jul 21, 2016

07:37 PM Task #2174: Dataminer and Statistical Manager packages: All added to the playbook lists.
Andrea Dell'Amico
02:36 PM Task #2174: Dataminer and Statistical Manager packages: ~~~
install.packages("gdata")
~~~ Gianpaolo Coro
07:27 PM Task #4771 (Feedback): Run smartgears on the rstudio-server instances as unprivileged user: It seems I got it working. I heavily modified the script that adds the users so that it uses sudo.
It also creates a... Andrea Dell'Amico
12:04 PM Task #4771 (In Progress): Run smartgears on the rstudio-server instances as unprivileged user: Starting with rstudio-dev Andrea Dell'Amico
12:02 PM Task #4771: Run smartgears on the rstudio-server instances as unprivileged user: We need to:
* Give sudo privileges to the commands esecuted by the `Ruseradd.sh` script
* Add firewall rules to i... Andrea Dell'Amico
12:00 PM Task #4771 (Closed): Run smartgears on the rstudio-server instances as unprivileged user: We need to:
* Give sudo privileges to the commands esecuted by the `Ruseradd.sh` script
* Andrea Dell'Amico
07:26 PM Incident #4778 (Closed): Workspace interaction is very slow: Massimiliano Assante
07:25 PM Incident #4778 (In Progress): Workspace interaction is very slow: Massimiliano Assante
06:38 PM Incident #4778: Workspace interaction is very slow: i marine gateway has been restarted, up again in few minutes Massimiliano Assante
06:37 PM Incident #4778: Workspace interaction is very slow: no, we're getting rid of this VM on Monday, I suppose a server restart would be enough to temporarily fix this problem Massimiliano Assante
06:26 PM Incident #4778: Workspace interaction is very slow: The slower portal is on a slower xen server, I can move it on another hardware, it requires very few minutes of downt... Tommaso Piccioli
05:39 PM Incident #4778: Workspace interaction is very slow: i-marine.d4science.org Gianpaolo Coro
05:35 PM Incident #4778: Workspace interaction is very slow: @gianpaolo.coro@isti.cnr.it what portal are you using? Roberto Cirillo
05:04 PM Incident #4778: Workspace interaction is very slow: The iMarine portal seems to be very slow, while Services portal is ok. To upload a file (77 KB) to the Workspace, iMa... Valentina Marioli
04:22 PM Incident #4778: Workspace interaction is very slow: I confirm that it is very slow, too slow to be real. It happens since yesterday. I am changing the assignee since it ... Pasquale Pagano
04:10 PM Incident #4778 (Closed): Workspace interaction is very slow: The Workspace requires 2 minutes for a ~100k file upload.
Overall it makes very difficult to use StatMan because ge... Gianpaolo Coro
06:58 PM Support #4764 (Closed): BiodiversityLab - SAI - Impossible to open a project: Support. Solved.
(Thanks Gianpaolo for your support! I'm going to work more with SAI/Dataminer now) Emmanuel Blondel
06:53 PM Support #4764 (In Progress): BiodiversityLab - SAI - Impossible to open a project: is this a request of support? if yes, has it been satisfied? If yes, please close the ticket.
If it is not a reques... Pasquale Pagano
06:21 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project: At each saving step also a consistency check is made. For example, the save button on the parameters does some checks... Gianpaolo Coro
05:37 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Sorry for the delay in responding, i tried to access the project, it works now.
Before closing the issue, can you cl... Emmanuel Blondel
04:50 PM Incident #4774 (Closed): Issues with the WS in the production environment: If you are referring to the "gcf problem", the "gcf problem" cannot happen in the future because this problem was alr... Roberto Cirillo
04:03 PM Incident #4774: Issues with the WS in the production environment: What is planned to avoid this issue in the future or to be alerted? It was very difficult to understand that it was d... Gianpaolo Coro
03:58 PM Incident #4774 (Resolved): Issues with the WS in the production environment: The problem was due to a bad gcf library deployed on IS-Collector. Anyway, if the system is slow this is not related ... Roberto Cirillo
03:46 PM Incident #4774: Issues with the WS in the production environment: The exception has disappeared and this is good.
However, the system is slow (5 strings displayed in half minute). P... Gianpaolo Coro
03:42 PM Incident #4774: Issues with the WS in the production environment: Could you retry now, please? Roberto Cirillo
03:18 PM Incident #4774 (In Progress): Issues with the WS in the production environment: Roberto Cirillo
03:08 PM Incident #4774: Issues with the WS in the production environment: I'm referring to the BioDiversityLab VRE for the algorithms. We see these errors on the portal: http://paste.research... Gianpaolo Coro
03:01 PM Incident #4774: Issues with the WS in the production environment: Please, could you add some details? Have you seen any exception in statistical service? The problem is only in upload... Roberto Cirillo
02:47 PM Incident #4774 (Closed): Issues with the WS in the production environment: It seems that something is wrong with the Workspace. The StatMan computations do not report output anymore and people... Gianpaolo Coro
04:34 PM Task #4720: Deploy FhnManager service in /gcube/preprod: Roberto Cirillo wrote:
> I've deployed fhn-manager-service on node75.d4science.org but I see on starting a certifica... Nunzio Andrea Galante
02:26 PM Task #4735 (Closed): Change the owner of storage files according to Jackrabbit information: The metadata 'owner' of Storage has been updated according to Jackrabbit information. For 10.199 files the owner has ... Valentina Marioli
01:39 PM Task #4773 (Closed): The nagios check that verifies the support expiry day does not work anymore: It seems that uses a deprecated API version Andrea Dell'Amico

Jul 20, 2016

03:23 PM Task #2946 (Closed): Install ganglia and the local nagios checks on thredds-p-d4s.d4science.org: Done. Andrea Dell'Amico
02:26 PM Task #2946 (In Progress): Install ganglia and the local nagios checks on thredds-p-d4s.d4science.org: Ganglia is active.
Andrea Dell'Amico
03:23 PM Task #4196 (Closed): Restore nagios check on thredds VM: Done. Andrea Dell'Amico
02:24 PM Task #4196 (In Progress): Restore nagios check on thredds VM: Andrea Dell'Amico
03:14 PM Task #4734: Set .application folders to hidden: ".application" folders have been set to hidden. Valentina Marioli
03:01 PM Task #4735 (In Progress): Change the owner of storage files according to Jackrabbit information: Valentina Marioli
12:45 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Have you solved the issue?
Just as a clarification: After you change something you should save your project as in a ... Gianpaolo Coro
12:19 AM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Further, do not open take the Workspace and the SAI Web interface opened in two tabs in the browser, because this mix... Gianpaolo Coro
12:16 AM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Please, try selecting the folder but not double clicking it when you open the project; i.e., do not enter in the fold... Gianpaolo Coro

Jul 19, 2016

11:55 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Files (R script, and stat_algo project file) are there if i look into the workspace from the portal. If i look into t... Emmanuel Blondel
11:13 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Hi Emmanuel, the SAI project corresponds to a folder on the Workspace. To see if you saved the project, go to the WS ... Gianpaolo Coro
03:54 PM Support #4764: BiodiversityLab - SAI - Impossible to open a project: Now i realize that possibly i didn't save the project once assigned the VREs, because i don't see any of this informa... Emmanuel Blondel
03:20 PM Support #4764 (Closed): BiodiversityLab - SAI - Impossible to open a project: I've created a project in SAI + its R script. I've then assigned the R environment + the BiodiversityLab as target VR... Emmanuel Blondel
07:12 PM Task #4765 (Closed): Renew the wiki certificates: The Terena TLS certificate is missing some host aliases, let's ask for a Letsencrypt certificate that lists all the h... Andrea Dell'Amico
05:42 PM Task #3064 (Closed): Investigate the installation of an identity manager: It's working. I just reconfigured redmine to use the new ldap `redmine_admins` group as the administrators group.
Andrea Dell'Amico
04:07 PM Task #3064: Investigate the installation of an identity manager: It's working, I'm installing it on ldap.d4science.org too. Andrea Dell'Amico
12:05 PM Task #3064: Investigate the installation of an identity manager: I'm experimenting with fusiondirectory, reachable here: https://ldap-d.d4science.org/fusiondirectory/
The admin us... Andrea Dell'Amico
05:41 PM Task #4720 (Feedback): Deploy FhnManager service in /gcube/preprod: Roberto Cirillo

Jul 18, 2016

03:02 PM Task #4720 (In Progress): Deploy FhnManager service in /gcube/preprod: Roberto Cirillo
03:02 PM Task #4720: Deploy FhnManager service in /gcube/preprod: I've deployed fhn-manager-service on node75.d4science.org but I see on starting a certificate exception (I haven't in... Roberto Cirillo
02:53 PM Task #4721 (Closed): Migrate node75.d4science.org from gCubeapps VO to preprod VO: Roberto Cirillo
02:53 PM Task #4721 (In Progress): Migrate node75.d4science.org from gCubeapps VO to preprod VO: Roberto Cirillo
01:40 PM Task #4733: Remove node74.d4science.org from smart-executor ganglia cluster: This will happen automatically if the host will be provisioned by an ansible playbook.
Andrea Dell'Amico
01:38 PM Task #4742 (Closed): Registry services: Increase the maximum number of file descriptor to 32000: The limits were raised in 2013, but the pam configuration for the `su` command was not fixed. So the new limits were ... Andrea Dell'Amico
09:50 AM Task #4742 (Closed): Registry services: Increase the maximum number of file descriptor to 32000: This setting should be applied on all instances running in production:
~~~
node2.p.d4science.research-infrastruct... Roberto Cirillo
12:22 PM Task #2174: Dataminer and Statistical Manager packages: Postgres and PostGIS clients are required (have been already installed on dataminer1-d):
~~~
apt-get install post... Gianpaolo Coro
11:59 AM Incident #4743 (Closed): problems on nexus: Pasquale Pagano
11:57 AM Incident #4743 (Resolved): problems on nexus: OK, problem founded in the pam configuration, at boot processes started with "su" didn't set ulimit correctly.
Fix... Tommaso Piccioli
11:39 AM Incident #4743: problems on nexus: The limit for the open files was already setted to 16000/32000 years ago and nexus restarted after that for sure.
... Tommaso Piccioli
11:10 AM Incident #4743: problems on nexus: @tommaso.piccioli@isti.cnr.it please increase the number of descriptors and close the ticket. Thanks Pasquale Pagano
10:53 AM Incident #4743 (In Progress): problems on nexus: I could resolve all the artifacts to compile and release a module. For the moment nexus seems to be back to work. Tha... Claudio Atzori
10:36 AM Incident #4743: problems on nexus: For the moment I've restarted the nexus server.
Could you retry now, please? Roberto Cirillo
10:23 AM Incident #4743: problems on nexus: The maximum number of open files has been reached.
From shell I see that the nexus process has 1024 files opened.
u... Roberto Cirillo
09:57 AM Incident #4743 (Closed): problems on nexus: The nexus server on maven.research-infrastructure.eu seems to be misbehaving, see attached screenshots.
Although s... Claudio Atzori

Jul 15, 2016

07:13 PM Task #3064: Investigate the installation of an identity manager: midPoint is way too much and way too complex for our needs. Better try a plain ldap manager:
https://www.fusiondir... Andrea Dell'Amico
03:55 PM Task #3064 (In Progress): Investigate the installation of an identity manager: idm.d4science.org. IN A 146.48.122.94 Andrea Dell'Amico
03:46 PM Task #469 (Closed): Move some VMs to the new hypervisor to set some servers free and usable to experiment with OpenStack: Andrea Dell'Amico
03:45 PM Task #2514 (Closed): Free dlib8x and dlib10x and assign them to the ganeti cluster: We are not sure that using old and low capacity servers to host corporate services is a good idea. Closing for now.
Andrea Dell'Amico
03:44 PM Task #472 (Closed): Move the VMs from the 'OpenStack servers' to the new hypervisor: Andrea Dell'Amico
03:44 PM Task #471 (Closed): Locate the hypervisors to dedicate to OpenStack: We are going to start with two new servers. Andrea Dell'Amico
01:39 PM Task #4736 (Closed): smartgears container.xml: the context specific scope configuration needs to be generic: Done. Modified all the use cases accordingly.
Andrea Dell'Amico
01:04 PM Task #4736 (In Progress): smartgears container.xml: the context specific scope configuration needs to be generic: Andrea Dell'Amico
01:04 PM Task #4736 (Closed): smartgears container.xml: the context specific scope configuration needs to be generic: The template automation was created for the smart executor, but it's needed by other applications.
So it needs to ... Andrea Dell'Amico
11:37 AM Upgrade #4730 (Planned): Upgrade JackRabbit Repository: Valentina Marioli
11:09 AM Upgrade #4730 (Completed): Upgrade JackRabbit Repository: Massimiliano Assante
11:37 AM Task #4735 (Closed): Change the owner of storage files according to Jackrabbit information: Old files in Storage have a wrong owner. They have to be updated according to Jackrabbit information. Valentina Marioli
11:30 AM Task #4734 (Closed): Set .application folders to hidden: Since HL 2.4 will display folders with a dot at the start, ".application" folders have to be set to hidden (as proper... Valentina Marioli
11:22 AM Task #4733 (Closed): Remove node74.d4science.org from smart-executor ganglia cluster: This node now hosts a service gCore based: SPD Roberto Cirillo
11:21 AM Upgrade #4732 (Completed): Update Node Type Definition of Jackrabbit: Node type definition (CND) of Jackrabbit defines the structure of nodes. It has to be updated in order to enable new ... Valentina Marioli
11:20 AM Task #4728 (Closed): Deploy SPD service on node74.d4science.org in /gcube/preprod VO: Roberto Cirillo
11:20 AM Task #4728 (In Progress): Deploy SPD service on node74.d4science.org in /gcube/preprod VO: Roberto Cirillo
09:59 AM Task #4728 (Closed): Deploy SPD service on node74.d4science.org in /gcube/preprod VO: Roberto Cirillo
11:19 AM Task #4729 (Closed): Migrate node74.d4science.org from gCubeapps VO to /gcube/preprod VO: Roberto Cirillo
11:19 AM Task #4729 (In Progress): Migrate node74.d4science.org from gCubeapps VO to /gcube/preprod VO: Roberto Cirillo
10:03 AM Task #4729 (Closed): Migrate node74.d4science.org from gCubeapps VO to /gcube/preprod VO: It's need to install a gCore based container and the SPD service Roberto Cirillo
11:18 AM Upgrade #4324 (Completed): /gcube/preprod upgrade to gCube 4.0.0: Roberto Cirillo
11:15 AM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0: due to changes in a related task Valentina Marioli
11:15 AM Upgrade #4731 (Completed): Update Jackrabbit WebApp: Jackrabbit WebApp has to be updated to version 1.4. Valentina Marioli

Jul 14, 2016

05:00 PM Task #4442 (Closed): Create Custom Fields in Liferay DB for Site: Massimiliano Assante
03:30 PM Task #4442 (In Progress): Create Custom Fields in Liferay DB for Site: Massimiliano Assante
02:17 PM Task #4364: Update production keyspace definition on Cassandra Cluster to support new notification system: Also, a script should be run to migrate the current unread notifications to the new column family Massimiliano Assante
02:14 PM Task #4364 (In Progress): Update production keyspace definition on Cassandra Cluster to support new notification system: Massimiliano Assante
01:16 PM Task #4723 (Feedback): smartgears configuration: handle the case where a smartgears must run without a VO: Andrea Dell'Amico
12:22 PM Task #4723 (In Progress): smartgears configuration: handle the case where a smartgears must run without a VO: Andrea Dell'Amico
12:22 PM Task #4723 (Closed): smartgears configuration: handle the case where a smartgears must run without a VO: Add a conditional in the container.xml template to handle the case.
Andrea Dell'Amico
12:11 PM Task #4476: Please create new VM for production HA Proxy and deploy it: Massimiliano Assante wrote:
> Please remember that all these domains below, including some others yet to be created ... Andrea Dell'Amico
12:09 PM Task #4476: Please create new VM for production HA Proxy and deploy it: Please remember that all these domains below, including some others yet to be created (bluebridge.d4science.org smart... Massimiliano Assante
12:03 PM Task #4476 (Feedback): Please create new VM for production HA Proxy and deploy it: sobigdata.research-infrastructures.eu added as CNAME, x509 certificate updated with the new alias.
I increased the... Andrea Dell'Amico
11:58 AM Task #4606 (Feedback): Geonetwork dev 64 bit: Smartgears and postgresql 9.4 installed. The `geonetwork` db has the postgis extensions active.
Andrea Dell'Amico
11:52 AM Task #4722 (Closed): Enable Nagios check on SmartExecutor nodes: It's need to enable the standard nagios check for smart-executor service on all smartExecutor nodes, if it is not pre... Roberto Cirillo
11:32 AM Task #4718: installation of fhn-manager on gcube/preprod: Please refer to #4720 for this activity Roberto Cirillo
10:39 AM Task #4721 (Closed): Migrate node75.d4science.org from gCubeapps VO to preprod VO: The smart-executor hosted on node75.d4science.org will be dismissed and the container will be upgraded and migrated f... Roberto Cirillo
10:26 AM Task #4720 (Closed): Deploy FhnManager service in /gcube/preprod: The new service will be hosted on node75.d4science.org Roberto Cirillo

Jul 13, 2016

08:19 PM Task #4476: Please create new VM for production HA Proxy and deploy it: Also the http call timeout on infra gateways seems to be default one, could you check? Massimiliano Assante
08:08 PM Task #4476 (In Progress): Please create new VM for production HA Proxy and deploy it: please add the following domain just like you added the others:
* sobigdata.research-infrastructures.eu Massimiliano Assante
07:47 PM Task #4606: Geonetwork dev 64 bit: The db user will be `geonetwork`.
I need the name of the application context for the virtualhost configuration.
Andrea Dell'Amico
03:12 PM Task #4606 (In Progress): Geonetwork dev 64 bit: We are going to try another approach.
Please, make it a Smartgear installation and also install an updated version ... Fabio Sinibaldi
07:18 PM Task #4648 (Closed): Add Ganglia monitoring to the couchbase cluster: You can see the couchbase nodes here: http://monitoring.research-infrastructures.eu/ganglia/?c=D4science%20Couchdb%20... Andrea Dell'Amico
07:10 PM Task #4648 (In Progress): Add Ganglia monitoring to the couchbase cluster: Andrea Dell'Amico
05:19 PM Task #4648: Add Ganglia monitoring to the couchbase cluster: Yes, you can. Soon (September with the release of gCube 4.1) CouchDB will be dismissed. Pasquale Pagano
05:14 PM Task #4648: Add Ganglia monitoring to the couchbase cluster: Can we add them to the actual `couchdb` ganglia cluster or we need a new one? Andrea Dell'Amico
06:42 PM Upgrade #4323 (Planned): D4Science Root VO upgrade to gCube 4.0: Roberto Cirillo
10:29 AM Upgrade #4323: D4Science Root VO upgrade to gCube 4.0: **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** node1.p.d4science.research-infrastructures.eu
* **(CNR) DO... Roberto Cirillo
06:41 PM Upgrade #4322 (Planned): gCubeApps VO upgrade to gCube 4.0: Roberto Cirillo
03:55 PM Upgrade #4322: gCubeApps VO upgrade to gCube 4.0: **Hosting Nodes**

*GHN to upgrade*
* **(CNR) DONE** gcube01.vliz.be:8080
* **(CNR) DONE** node64.p.d4sc... Roberto Cirillo
06:40 PM Upgrade #4320 (Planned): FARM VO upgrade to gCube 4.0: Roberto Cirillo
11:56 AM Upgrade #4320: FARM VO upgrade to gCube 4.0: **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** node24.p.d4science.research-infrastructures.eu:8080
* **(C... Roberto Cirillo
06:06 PM Task #4717 (Closed): Modify the solr_over_tomcat ansible playbook to support multiple core: Done.
Andrea Dell'Amico
05:16 PM Task #4717 (In Progress): Modify the solr_over_tomcat ansible playbook to support multiple core: Andrea Dell'Amico
05:16 PM Task #4717 (Closed): Modify the solr_over_tomcat ansible playbook to support multiple core: We need to be able to statically configure multiple solr cores, starting from a pristine `collection1` data set.
Andrea Dell'Amico
05:45 PM Task #4718 (Closed): installation of fhn-manager on gcube/preprod: The requirements of the node that will host the service are:
- SmartGears
- RAM: >= 4
- CPU: no particular require... Gabriele Giammatteo
11:54 AM Upgrade #4325 (Planned): SoBigData VO upgrade to gCube 4.0: Roberto Cirillo
10:26 AM Upgrade #4325: SoBigData VO upgrade to gCube 4.0: **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sbd.d4science.org:8080
* **(CNR) DONE** collecto... Roberto Cirillo
11:53 AM Upgrade #4326 (Planned): SmartArea VO upgrade to gCube 4.0: Roberto Cirillo
10:35 AM Upgrade #4326: SmartArea VO upgrade to gCube 4.0: **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sa-d4s.smart-applications.area.pi.cnr.it:8080
* ... Roberto Cirillo
10:01 AM Task #4714 (Closed): MongoDB: convert mongo2-p from MMAPv1 to wiredTiger: Roberto Cirillo
10:01 AM Task #4714: MongoDB: convert mongo2-p from MMAPv1 to wiredTiger: mongo2-p has been successfully resynchronized with the new WiredTiger engine.
The space used by MongoDB is decreased... Roberto Cirillo

Jul 12, 2016

07:12 PM Task #2227: test replication tools for postgres: Added ganglia monitoring, within a general "D4Science Development servers" cluster. http://monitoring.research-infras... Andrea Dell'Amico
05:21 PM Task #2227 (Closed): test replication tools for postgres: Andrea Dell'Amico
03:28 PM Task #2227 (Feedback): test replication tools for postgres: The two servers are now up to date.
Andrea Dell'Amico
09:19 AM Task #2227: test replication tools for postgres: you can restart the node with pgpool, we are not using it yet. Lucio Lelii
07:11 PM Task #4241 (Closed): Convert the ganglia configuration setups to talk unicast: I've tested a working configuration. Changed the ganglia and iptables roles accordingly.
Andrea Dell'Amico
05:20 PM Task #4144: Two VMs are needed to test the pgpool replication functionalities: I destroyed the VMs.
Andrea Dell'Amico
03:47 PM Task #4714 (In Progress): MongoDB: convert mongo2-p from MMAPv1 to wiredTiger: Roberto Cirillo
03:47 PM Task #4714 (Closed): MongoDB: convert mongo2-p from MMAPv1 to wiredTiger: Change allocation engine from MMAPv1 to WiredTiger Roberto Cirillo
12:13 PM Upgrade #4328 (Completed): Preprod Gateway upgrade to gCube 4.0: Massimiliano Assante

Jul 11, 2016

05:46 PM Task #4703 (Feedback): Create Tomcat startup script at boot: The startup scripts are ready. They are _upstart based_ because, with a manual installed tomcat, it's way easiers.
... Andrea Dell'Amico
03:47 PM Task #4703 (In Progress): Create Tomcat startup script at boot: Andrea Dell'Amico
12:38 PM Task #4703 (Closed): Create Tomcat startup script at boot: Massimiliano Assante
04:43 PM Upgrade #4324 (In Progress): /gcube/preprod upgrade to gCube 4.0.0: Roberto Cirillo
12:38 PM Upgrade #4319: D4Science Infrastructure Upgrade to gCube 4.0: due to changes in a related task Massimiliano Assante
12:23 PM Task #4379 (Paused): Update Tomcat7 servers (server.xml) to add cluster configuration: this activity cannot be performed as the HTTP Session cannot be transparently brought on the other instance (due to t... Massimiliano Assante
12:22 PM Task #4379 (In Progress): Update Tomcat7 servers (server.xml) to add cluster configuration: Massimiliano Assante
11:52 AM Task #4606 (Closed): Geonetwork dev 64 bit: No, thanks, just the tomcat. Fabio Sinibaldi
10:20 AM Task #4617 (In Progress): Smart-executor- node24.d4science.org: Too Many Open Files: The problem arises from the fact that I used two libraries in the plugin, namely the social networking library and th... Costantino Perciante

Jul 08, 2016

06:58 PM Task #4606: Geonetwork dev 64 bit: does it need to be a smartgears installation?
Andrea Dell'Amico
06:56 PM Task #4606 (Feedback): Geonetwork dev 64 bit: The VM is ready. You can access as `root` and `gcube` users. The tomcat instance runs as `gcube`, into the home direc... Andrea Dell'Amico
04:49 PM Task #4606: Geonetwork dev 64 bit: host is going to be geonetwork1-d-d4s.d4science.org, IP 146.48.122.226
Andrea Dell'Amico
05:22 PM Task #4466 (In Progress): Export Accounting Data from Couchdb to Couchbase: Alessandro Pieve
02:57 PM Task #4688 (Closed): Fix the foreman ansible callback to run asynchronously: Andrea Dell'Amico
02:57 PM Task #4688: Fix the foreman ansible callback to run asynchronously: The diff file against the old version.
Andrea Dell'Amico
02:55 PM Task #4688 (In Progress): Fix the foreman ansible callback to run asynchronously: Thanks to @sandro.labruzzo@isti.cnr.it we have a new callback with a much lesser overhead.
Andrea Dell'Amico
01:19 PM Task #4688 (Closed): Fix the foreman ansible callback to run asynchronously: The ansible callback that post data to foreman is synchronous, and each POST action needs 20/30 second for each inv... Andrea Dell'Amico
02:38 PM Task #4670 (Closed): Endow database with PostGis functions: The mpa DB works for our scopes with the installation of Andrea. I close this ticket and maybe you can open another o... Gianpaolo Coro
01:15 PM Task #4670: Endow database with PostGis functions: It should be much better, yes.
I assumed that the old version was needed because of some kind of compatibility probl... Andrea Dell'Amico
12:35 PM Task #4670: Endow database with PostGis functions: Sorry, I can't do it. But why use this old machine? We are going to dismiss it as soon as we migrate GeoServer and Ge... Fabio Sinibaldi
01:23 PM Task #2227: test replication tools for postgres: @lucio.lelii@isti.cnr.it I need a short downtime to update the pgpool configuration on those hosts to be identical to... Andrea Dell'Amico
01:12 PM Support #4687 (Closed): Alias for node0-d-puma.d4science.org: The apache configuration has been changed, and https (with redirection from http) enabled.
Andrea Dell'Amico
11:54 AM Support #4687 (In Progress): Alias for node0-d-puma.d4science.org: Done.
I'm now changing the virtualhost on the server so that it will answer correctly.
Andrea Dell'Amico
11:51 AM Support #4687 (Closed): Alias for node0-d-puma.d4science.org: It is necessary to create an alias for node0-d-puma.d4science.org.
The new name should be openportal.isti.cnr.it. Michele Artini
10:17 AM Task #4125 (Closed): create 6 istances of Couchbase for production: Cluster completed Alessandro Pieve

Jul 07, 2016

07:23 PM Task #4670: Endow database with PostGis functions: Wow, Ubuntu 9.04 and postgres 8.3. The postgis packages are installed, but the extensions need to be installed on eac... Andrea Dell'Amico
01:30 PM Task #4670 (Closed): Endow database with PostGis functions: The "mpa" database schema should be endowed with PostGis functions on geoserver-dev4.d4science.org.
I have tried ... Gianpaolo Coro
12:29 PM Task #3895: Upgrade the jackrabbit devel environment: so? what is now the plan to export form Derby? Pasquale Pagano
11:34 AM Task #3895: Upgrade the jackrabbit devel environment: ws-repo-test.d4science.org (Jackrabbit preprod) is now using postgreSQL to store data, but I have not tested the Jack... Valentina Marioli
11:30 AM Task #3980 (In Progress): Configure geonetwork users in order to integrate CKAN: Leonardo Candela
10:19 AM Task #4667 (Closed): Undeploy gCubeApps/DocumentsWorkflow VRE: The applications related to DocumentsWorkflow VRE have been dismissed on gCube 4, therefore the VRE should be removed. Massimiliano Assante

Jul 06, 2016

11:11 PM Task #2174: Dataminer and Statistical Manager packages: install.packages("httr")
install.packages("XML") Gianpaolo Coro
04:55 PM Task #2174: Dataminer and Statistical Manager packages: ~~~
install.packages("curl")
install.packages("caret")
~~~
Gianpaolo Coro
03:10 PM Task #2174: Dataminer and Statistical Manager packages: Gianpaolo Coro wrote:
> The following python packages are required:
>
> ~~~
> numpy, matplotlib, psycopg2, scipy... Andrea Dell'Amico
05:58 PM Upgrade #4329: Produce Release Notes for gCube 4.0.0: Please find the notes for the gCube 4.0 release on the following link:
https://goo.gl/MMoUfS
Nikolas Laskaris
04:31 PM Task #3980: Configure geonetwork users in order to integrate CKAN: Preproduction environment has been configured. Fabio Sinibaldi
04:03 PM Task #4606: Geonetwork dev 64 bit: I tried to put the entire webapp folder in a SmartGear installed in my machine (tomcat 7, java 64, Ubuntu 12). Just c... Fabio Sinibaldi
12:21 PM Task #4648 (Closed): Add Ganglia monitoring to the couchbase cluster: Add Ganglia monitoring to the couchbase cluster Alessandro Pieve
11:27 AM Task #4647 (Closed): node24.d4science.org : Increase the maximum number of file descriptors: done Tommaso Piccioli
11:23 AM Task #4647 (Closed): node24.d4science.org : Increase the maximum number of file descriptors: The maximum number of file descriptor for user gcube should be set to 16000. Now we have the limit set to 1024. Roberto Cirillo
10:57 AM Upgrade #4328 (In Progress): Preprod Gateway upgrade to gCube 4.0: Massimiliano Assante
10:57 AM Upgrade #4328 (Planned): Preprod Gateway upgrade to gCube 4.0: Massimiliano Assante

Jul 01, 2016

06:12 PM Task #4476: Please create new VM for production HA Proxy and deploy it: ~~~
infra-lb.d4science.org: 146.48.122.98
infra-lb1.d4science.org: 146.48.122.115
infra-lb2.d4science.org: 146.4... Andrea Dell'Amico
06:03 PM Task #4477: Create a new VM for tomcat production cluster: IP is going to be 146.48.122.87 Andrea Dell'Amico
05:19 PM Task #4610 (In Progress): Algorithms installation in D4Science: Gianpaolo Coro
05:11 PM Task #4610: Algorithms installation in D4Science: The installation package is a zip file available here:
~~~
https://svn.research-infrastructures.eu/public/d4scien... Gianpaolo Coro
05:10 PM Task #4610 (Closed): Algorithms installation in D4Science: With the passage to Dataminer, an installation script has been developed to add an algorithm to Dataminer after a pub... Gianpaolo Coro
04:11 PM Task #4606: Geonetwork dev 64 bit: No way. The running kernel is 64 bit, but the whole distribution is a 32 bit one.
We can surely create a new VM (s... Andrea Dell'Amico
04:01 PM Task #4606 (In Progress): Geonetwork dev 64 bit: WOW :).
It seems that the JDK was manually installed, I'm trying to install the latest jdk 7 using the Ubuntu PPA.
Andrea Dell'Amico
03:38 PM Task #4606 (Closed): Geonetwork dev 64 bit: Java in geoserver-dev2.d4science-ii.research-infrastructures.eu is 32 bit.
Can you please update to 64 bit?
Maybe ... Fabio Sinibaldi
01:59 PM Task #4534 (Closed): Expand GN resources RAM in dev: Andrea Dell'Amico

Jun 30, 2016

06:56 PM Task #4598 (Closed): Deploy Patch for Incident #4246 In some cases notification email resulting from posts are "broken": Massimiliano Assante
06:56 PM Task #4598 (Closed): Deploy Patch for Incident #4246 In some cases notification email resulting from posts are "broken": Massimiliano Assante
05:16 PM Task #4594 (Closed): SmartExecutor services migration from production to pre-production: The following services should be migrated from Production environment to Pre-Production environment and their contain... Roberto Cirillo
05:08 PM Task #4584 (Closed): Provide a script for upgrading a container gCore based: The new scripts are available here:
~~~
https://wiki.d4science.org/index.php/GHN_clean_601
https://wiki.d4scienc... Roberto Cirillo
03:11 PM Task #4584 (In Progress): Provide a script for upgrading a container gCore based: Roberto Cirillo
03:10 PM Task #4584 (Closed): Provide a script for upgrading a container gCore based: The script should upgrade a container gCore based to version 6.0.1-4.0.0 Roberto Cirillo
05:06 PM Upgrade #4324 (Planned): /gcube/preprod upgrade to gCube 4.0.0: Roberto Cirillo
05:03 PM Upgrade #4324: /gcube/preprod upgrade to gCube 4.0.0: **Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-pre.d4science.org:8080
* **(CNR) DONE** collecto... Roberto Cirillo
04:14 PM Task #4414: New server for the Broker Service: We only need the reverse proxy.
Andrea Dell'Amico
04:00 PM Task #4534 (Feedback): Expand GN resources RAM in dev: VM rebooted
Andrea Dell'Amico
02:01 PM Task #4534: Expand GN resources RAM in dev: Reboot it whenever you're ready. Fabio Sinibaldi
12:44 PM Task #4534 (In Progress): Expand GN resources RAM in dev: I added 2GB of ram to the configuration. Let me know when I can reboot it.
Andrea Dell'Amico
01:08 PM Task #4125: create 6 istances of Couchbase for production: fourth instance ready
couchbase04-d4s.d4science.org Tommaso Piccioli

Jun 29, 2016

06:41 PM Task #4414 (In Progress): New server for the Broker Service: You can access the machine and the services are running. rabbitmq needs some love:
* Can you remind me of what plu... Andrea Dell'Amico
05:49 PM Task #4534 (Closed): Expand GN resources RAM in dev: We need to test GeoNetwork capabilities in updates, that crashed 3 times with 3GB of RAM (tomcat option is -Xmx3072M ... Fabio Sinibaldi
11:15 AM Task #4125: create 6 istances of Couchbase for production: 3 from existing instance of couchbase dev
3 from new instance Alessandro Pieve

Jun 28, 2016

02:46 PM Task #4477 (Closed): Create a new VM for tomcat production cluster: A "copy" of infra-gateway.d4science.org (named infra-gateway1.d4science.org) should be added to the cluster Massimiliano Assante
02:43 PM Task #4476 (Closed): Please create new VM for production HA Proxy and deploy it: Possibly we should have 2 HA Proxys.
Also,
in order to configure the production environment in advance the follow... Massimiliano Assante
12:24 PM Incident #4468 (Closed): Cannot unassign algorithm from FAO TUNA ATLAS VRE: Gianpaolo Coro
11:02 AM Incident #4468 (Feedback): Cannot unassign algorithm from FAO TUNA ATLAS VRE: The problem was due to a missing GCoreEndpoint. The GCoreEndpoint of ResourceManager service was missing but the serv... Roberto Cirillo
10:54 AM Incident #4468 (In Progress): Cannot unassign algorithm from FAO TUNA ATLAS VRE: Roberto Cirillo
12:21 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2): You can find it into the file /home/life/infra_db_pwd
Andrea Dell'Amico
12:19 PM Task #4141 (Closed): Deploy Auth Service on the following scopes: Massimiliano Assante
10:56 AM Task #3475 (Closed): Add 2 OrientDB instances: Luca Frosini

Jun 27, 2016

05:40 PM Incident #4468 (Closed): Cannot unassign algorithm from FAO TUNA ATLAS VRE: Selecting "Remove from scope->FAO_TunaAtlas" causes "500 Internal Server Error The call failed on the server; see ser... Gianpaolo Coro
04:57 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2): @andrea.dellamico@isti.cnr.it could you put the db password of the db named infra_liferay whose username is infra on ... Massimiliano Assante
04:44 PM Task #4418 (Closed): Add RConnector service to gCubeApps/FAO_TunaAtlas: Roberto Cirillo
04:44 PM Task #4416 (Closed): Enable Statistical Manager service and algorithms on gCubeApps/FAO_TunaAtlas: Roberto Cirillo
03:10 PM Task #4446 (Closed): Add DBManager-portlet to gCubeApps/FAO_TunaAtlas: It's OK now. Gianpaolo Coro
03:08 PM Task #4466: Export Accounting Data from Couchdb to Couchbase: Export a data from couchdb into file json
Create a bucket and map reduce Alessandro Pieve
03:07 PM Task #4466 (Closed): Export Accounting Data from Couchdb to Couchbase: * Create a 5 bucket (job,portlet,task,service and storage)
* Create map-reduce for Cluster couchbase
* Export data ... Alessandro Pieve
02:53 PM Task #4125: create 6 istances of Couchbase for production: change server node and ip start for all istances:
/opt/couchbase/var/lib/couchbase/couchbase-server.node
/opt/couch... Alessandro Pieve
12:49 PM Task #4125 (In Progress): create 6 istances of Couchbase for production: couchbase01-d4s.d4science.org
couchbase02-d4s.d4science.org
couchbase03-d4s.d4science.org
on each node:
8 GB Ra... Tommaso Piccioli
10:36 AM Task #4125: create 6 istances of Couchbase for production: Furthermore please Change Hostname and Dns for 3 existing instance of couchbase dev
E.g.
From
couchbase03-d-d4s... Alessandro Pieve
01:25 PM Task #3895: Upgrade the jackrabbit devel environment: Done.
Andrea Dell'Amico
12:41 PM Task #3895: Upgrade the jackrabbit devel environment: To perform the migration, I need to shutdown the tomcat, but I can't do that on node11.d. So I'm going to use ws-repo... Valentina Marioli
10:30 AM Task #4137: create 1 instance of couchbase: The development couchbase cluster is definivetly constituted by:
couchbase01-d-d4s.d4science.org
couchbase02-d-d4... Tommaso Piccioli

Jun 25, 2016

04:06 PM Task #4414: New server for the Broker Service: VM name is going to be broker1-dev-dnet.d4science.org, IP 146.48.123.4 Andrea Dell'Amico
03:36 PM Task #4456 (Feedback): Switch the ubuntu mirrors away from it.archive.ubuntu.com: xen-tools.conf changed on all the hypervisors.
Andrea Dell'Amico
03:30 PM Task #4456 (In Progress): Switch the ubuntu mirrors away from it.archive.ubuntu.com: Andrea Dell'Amico
02:15 PM Task #4456 (Closed): Switch the ubuntu mirrors away from it.archive.ubuntu.com: The italian mirrors are often unreachable or misaligned. The generic `archive.ubuntu.com` are more reliable.
Andrea Dell'Amico

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