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From Mar 19, 2016 to Apr 17, 2016

Apr 15, 2016

08:49 PM Task #3481 (Closed): Add ldap.d4science.org as CNAME of ldap-liferay.d4science.org
This ldap will serve all the infrastructure.
Andrea Dell'Amico
08:48 PM Task #3480: Enable SSL on ldap-liferay.d4science.org
@massimiliano.assante@isti.cnr.it let me know when we can make the configuration change. A ldap restart is needed. It... Andrea Dell'Amico
08:46 PM Task #3480 (Closed): Enable SSL on ldap-liferay.d4science.org
The service is still using non encrypted connections.
When all the services will have switched to the encrypted co...
Andrea Dell'Amico
08:43 PM Task #3164 (Closed): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
Closing this one. letsencrypt is a viable solution, the related task is tracking the progress on the services configu... Andrea Dell'Amico
08:41 PM Task #2705 (Feedback): Create new VM for production Infrastructure Gateway (Liferay 6.2)
Are there any other requirements?
Andrea Dell'Amico
08:40 PM Task #2892 (Closed): Provide SoBigData colleagues with details for interfacing with LDAP
Andrea Dell'Amico
08:34 PM Task #3479 (Closed): Letsencrypt hook script for openldap
The openldap playbook has been updated. Andrea Dell'Amico
08:00 PM Task #3479 (In Progress): Letsencrypt hook script for openldap
And the ldif that add the certificates to the openldap configuration:
~~~
dn: cn=config
add: olcTLSCACertificate...
Andrea Dell'Amico
07:59 PM Task #3479: Letsencrypt hook script for openldap
The hook script:
~~~
#!/bin/bash
. /etc/default/letsencrypt
mkdir -p /etc/pki/openldap
chown openldap:open...
Andrea Dell'Amico
07:55 PM Task #3479 (Closed): Letsencrypt hook script for openldap
A script that copies the certificates in a different place with the correct permissions. Andrea Dell'Amico
08:33 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail
I propose to
- @lucio.lelii@isti.cnr.it to report the right rule to write to perform a replace;
- @g.panichi@isti...
Pasquale Pagano
04:59 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail
For the sake of completeness, the rule is as follows
~~~
Equals(Soundex($[Text]),Soundex("skj"))
~~~
Please...
Leonardo Candela
04:42 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail
Please, share the rule with @lucio.lelii@isti.cnr.it (I'm not allowed to do that).
Re error messages, I see it is ...
Leonardo Candela
04:29 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail
In FAO Tuna Atlas, on a file with 'skj', I tried a replace to 'SKJ'
I shared the rule with L.Candela, as Giancarlo...
Anton Ellenbroek
03:18 PM Support #3137 (Closed): Tuna Atlas Tabular Data Manager; Rules fail
Because of the lack of further details I'm going to close the ticket. It is almost impossible to figure out what is g... Leonardo Candela
10:14 AM Support #3137 (Feedback): Tuna Atlas Tabular Data Manager; Rules fail
Giancarlo Panichi
07:57 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates
Or, for the letsencrypt acme tool:
~~~
letsencrypt_acme_install: True
letsencrypt_acme_domains:
- '{{ ansible...
Andrea Dell'Amico
06:18 PM Task #3475 (Closed): Add 2 OrientDB instances
Luca Frosini
05:08 PM Task #3181: Update RStudio on rstudio.d4science.org
rstudio-dev.d4science.org is now running rstudio-server 0.99 and R 3.2.3 with the same set of R plugins that are curr... Andrea Dell'Amico
03:30 PM Task #3181 (In Progress): Update RStudio on rstudio.d4science.org
Andrea Dell'Amico
04:24 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
@roberto.cirillo@isti.cnr.it please install the spd plugin(s) required on the SPD service node of gCubeApps/EuBrazilO... Massimiliano Assante
04:16 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
Those plugins are not part of the spd bundle. The installation is up to the infrastructure manager depending on the r... Lucio Lelii
03:48 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
doesn't all the plugin jars come with the maven build of SPD? Or you have a specific maven profile for each deploymen... Massimiliano Assante
03:41 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
You need intall the plugin jar in the node and load it in the calsspath (here you can check the component that you ne... Lucio Lelii
03:25 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
Thanks Lucio, now that we know which SPD plugins are necessary we need the documentation to enable these plugins. Massimiliano Assante
03:21 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
What leo wrote is correct, the expected plugin for EUBrazil openBio were GBIF, speciesLink, Catalogue of Life and Bra... Lucio Lelii
02:52 PM Task #3254 (Paused): Fix Notification added items path on Production
We found the way to update in 30 minutes, however we just found out we have no backup for the cluster, cannot proceed... Massimiliano Assante
02:51 PM Support #3234 (Closed): Fix Notification added items path
Massimiliano Assante
02:50 PM Task #3355 (Closed): enable backup for cassandra production cluster
It seems that when we switched to the new cassandra cluster we forgot to enable a backup for cassandra production clu... Massimiliano Assante
02:15 PM Task #3285 (Closed): Provide a portal for /gcube/preprod VO
Massimiliano Assante
10:56 AM Task #3285 (In Progress): Provide a portal for /gcube/preprod VO
Massimiliano Assante
10:40 AM Task #3285 (Closed): Provide a portal for /gcube/preprod VO
A new instance of portal is needed for /gcube/preprod VO Roberto Cirillo
01:35 PM Support #3252 (Closed): Please add me to the svn for the d4science
Andrea Dell'Amico
01:03 PM Incident #3206 (Closed): Tabular Data Manager - Open - Does not show correct list of available tabular resources
Since the error cannot be reproduced I'm going to close the ticket Lucio Lelii
11:32 AM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO
This is needed by AquaMaps, which I guess is in the production env. only. Gianpaolo Coro
11:28 AM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO
The following resource: Database/FishCodesConversion , is not present in /gcube/devsec VO. @gianpaolo.coro@isti.cnr.i... Roberto Cirillo
11:06 AM Task #3267 (In Progress): Add Statistical RuntimeResource to /gcube/preprod VO
Roberto Cirillo
11:31 AM Task #3269 (Closed): Add Gis Resources to /gcube/preprod VO
Roberto Cirillo
11:31 AM Task #3269 (In Progress): Add Gis Resources to /gcube/preprod VO
Roberto Cirillo

Apr 14, 2016

07:32 PM Task #3258: letsencrypt script for haproxy
Added support for the letsencrypt acme client. It has different paths.
Andrea Dell'Amico
07:11 PM Task #3254 (In Progress): Fix Notification added items path on Production
The HL Patch provided by Valentina has been deployed on the 4 production gateways with success. Unfortunately we coul... Massimiliano Assante
07:02 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
And it works. So we can convert to ssl with valid certificates almost all our services.
Andrea Dell'Amico
06:55 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
I successfully tested a manual installation on redmine-d.d4science.org. Now trying via provisioning on ldap-liferay-d... Andrea Dell'Amico
02:24 PM Task #3164 (In Progress): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
There are less intrusive clients, that possibly do not need to run as root. I'm going to try this one: https://github... Andrea Dell'Amico
06:29 PM Incident #3235 (Closed): Upload archive does not expand the archive
The issue has been fixed in HL 2.3 and it will be released in gCube 3.11. You can test it in dev3 portal.
I've trie...
Valentina Marioli
03:50 PM Incident #3235: Upload archive does not expand the archive
Valentina is working and performing test on this issue so @leonardo.candela@isti.cnr.it will receive feedback ASAP
I...
Francesco Mangiacrapa
04:58 PM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO
I would advice to copy the resources. Creating them from scratch brings high risk of introducing errors and is **very... Gianpaolo Coro
04:55 PM Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO
There are a lot of resources that aren't defined in the root-vo (/gcube) but they are only defined in the VO scope (/... Roberto Cirillo
11:27 AM Task #3267 (Closed): Add Statistical RuntimeResource to /gcube/preprod VO
The following resources should be added to /gcube/preprod VO:
~~~
DataStorage/StorageManager VO/VRE StorageManage...
Roberto Cirillo
04:49 PM Task #3181: Update RStudio on rstudio.d4science.org
I see #630 more appropriate as parent task for this ticket. If you agree, please update it Gabriele Giammatteo
11:39 AM Task #3269 (Closed): Add Gis Resources to /gcube/preprod VO
The following GIS resources should be added to /gcube/preprod VO
**Service Endpoints**
~~~
Category: Gis - Nam...
Roberto Cirillo

Apr 13, 2016

08:03 PM Task #3262 (Closed): Change the ldap authentication for the d4science subversion repository
From the _old_ ldap server to the new. Possible problems that need to be managed:
* Different usernames
* Users t...
Andrea Dell'Amico
08:02 PM Task #3261 (Closed): Manage more ldap groups from the portal so that we can setup different roles on various services
Needed right now:
* An admin group for redmine
* The 'infrastructure managers' that is now a manually managed gro...
Andrea Dell'Amico
07:55 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates
Inside the ansible playbooks, the following variables need to be defined or set to `True`:
~~~
letsencrypt_instal...
Andrea Dell'Amico
07:49 PM Task #3257: Create a letsencrypt callback for each service that will serve letsencrypt certificates
An example (it's the `haproxy` one):
~~~
#!/bin/bash
LE_SERVICES_SCRIPT_DIR=/usr/local/lib/letsencrypt
LE_CER...
Andrea Dell'Amico
07:48 PM Task #3257 (In Progress): Create a letsencrypt callback for each service that will serve letsencrypt certificates
The scripts need to be installed in the /usr/local/lib/letsencrypt directory and marked as executable. Andrea Dell'Amico
07:41 PM Task #3257 (Closed): Create a letsencrypt callback for each service that will serve letsencrypt certificates
The letsencrypt scripts take care of the certificates requests and renewal. After a certificate has been renewed, the... Andrea Dell'Amico
07:46 PM Task #3260 (Closed): letsencrypt script for nginx
nginx needs to be reloaded after a certificate renewal.
Andrea Dell'Amico
07:45 PM Task #3259 (Closed): letsencrypt script for apache
apache needs to be reloaded after a certificate renewal. Andrea Dell'Amico
07:45 PM Task #3258 (Closed): letsencrypt script for haproxy
The script has been committed to the ansible haproxy role.
Andrea Dell'Amico
07:44 PM Task #3258 (Closed): letsencrypt script for haproxy
The script needs to create the `/etc/pki/certs/haproxy.pem` file from the fullchain.pem and key.pem, and set the corr... Andrea Dell'Amico
06:16 PM Task #3202: add statistical resources to gcube/preprod VO
The generic resources with secondary type: "StatisticalManagerAlgorithm" have been correctly added to /gcube/preprod VO Roberto Cirillo
04:56 PM Task #3202 (In Progress): add statistical resources to gcube/preprod VO
I'm going to write a java tool for adding a set of resource from a scope to another one Roberto Cirillo
11:55 AM Task #3202 (Paused): add statistical resources to gcube/preprod VO
Roberto Cirillo
05:10 PM Support #3252 (Feedback): Please add me to the svn for the d4science
Andrea Dell'Amico
05:08 PM Support #3252: Please add me to the svn for the d4science
Please follow the email instructions to activate your account. Ignore the certificate security warnings.
Andrea Dell'Amico
05:03 PM Support #3252 (In Progress): Please add me to the svn for the d4science
Andrea Dell'Amico
04:17 PM Support #3252 (Closed): Please add me to the svn for the d4science
Ioannis Karkalakos
05:09 PM Task #3254 (Closed): Fix Notification added items path on Production
We have all ready to proceed with the fix caused by the HL bug about items path. @valentina.marioli@isti.cnr.it provi... Massimiliano Assante
04:58 PM Task #3104 (Closed): Please install a reverse proxy over dev2.d4science.org
Massimiliano Assante
04:57 PM Task #1659 (Paused): Federated and Classic Login cannot "live" together
Massimiliano Assante
04:56 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
Leo, we should ask @lucio.lelii@isti.cnr.it or @valentina.marioli@isti.cnr.it Massimiliano Assante
04:53 PM Task #2516 (In Progress): Provide RStudio in the e-Infrastructure VREs
Massimiliano Assante
04:43 PM Task #3141 (Feedback): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
All VMs backup checked, all VMs switched off.
As requested, we will wait few days before remove VM disks
Tommaso Piccioli
03:26 PM Task #3141: Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
All the containers have been stopped. I think is better to wait a couple of day before delete completely the Vms. If ... Roberto Cirillo
12:02 PM Task #3141 (In Progress): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
This is the list of OpenBio VMs:
~~~
node3.p.d4science.research-infrastructures.eu RM, RB
node3.p.d4science.res...
Roberto Cirillo
04:17 PM Task #3164 (Feedback): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
Andrea Dell'Amico
04:16 PM Task #3164: Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
We now have a script to request/renew the certificate, and a cron job that starts the renewal procedure if the certif... Andrea Dell'Amico
03:31 PM Task #3243 (Closed): Remove monitoring checks from openBio VMs
Andrea Dell'Amico
12:26 PM Task #3243 (In Progress): Remove monitoring checks from openBio VMs
Nagios checks removed. The ganglia ones, if any, expire by themselves.
Andrea Dell'Amico
12:13 PM Task #3243 (Closed): Remove monitoring checks from openBio VMs
All VMs belonging to "OpenBio" VO should be dismissed and all related monitoring check should be removed.
This is ...
Roberto Cirillo
03:14 PM Incident #3136 (Closed): From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error
The problem is solved, the fix will be released in gCube3.11. Giancarlo Panichi
11:53 AM Incident #3136: From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error
This problem is clear, and is due to the fact that upon back button the server method (in the portlet java) which is ... Massimiliano Assante
03:02 PM Task #3236: TabMan; Sharing something which is not mine
We need to update the share widget @francesco.mangiacrapa@isti.cnr.it, what do you think? Giancarlo Panichi
11:29 AM Task #3236: TabMan; Sharing something which is not mine
I understand the disappointment and I share your view since this was already discussed internally many months ago. Th... Pasquale Pagano
09:23 AM Task #3236 (Closed): TabMan; Sharing something which is not mine
If I open a table, I can click the share button (useful to see who it was shared with)
When I click "OK" or try t...
Anton Ellenbroek
01:05 PM Incident #3235: Upload archive does not expand the archive
I upload the files by using the services portal.
The two files are available at the following URIs:
* (small t...
Leonardo Candela
11:27 AM Incident #3235: Upload archive does not expand the archive
@leonardo.candela@isti.cnr.it, What is the portal where we should investigate? i-marine or services?
Can you confir...
Francesco Mangiacrapa
10:20 AM Incident #3235 (Feedback): Upload archive does not expand the archive
Francesco Mangiacrapa
10:20 AM Incident #3235 (In Progress): Upload archive does not expand the archive
Leonardo Candela wrote:
> I successfully managed to upload twice a tgz file by using the "upload archive" facility y...
Francesco Mangiacrapa
12:54 PM Task #3109 (Feedback): VREModeler: nightly restart
The cron job will restart the service at 2 am on Saturdays night. Andrea Dell'Amico
12:51 PM Task #3109 (In Progress): VREModeler: nightly restart
Andrea Dell'Amico
12:34 PM Support #3234: Fix Notification added items path
On dev the fix seems to work Costantino Perciante

Apr 12, 2016

07:18 PM Incident #3136: From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error
this is not possible service side, I will assign this ticket to giancarlo that is the responsible for the portlet. Bu... Lucio Lelii
07:17 PM Incident #3235 (Closed): Upload archive does not expand the archive

I successfully managed to upload twice a tgz file by using the "upload archive" facility yet this does not produce ...
Leonardo Candela
07:09 PM Incident #3206: Tabular Data Manager - Open - Does not show correct list of available tabular resources
It seems to be related with a problem we had today in production, We solved it 1 hour ago. Can you retry and let me k... Lucio Lelii
11:55 AM Incident #3206: Tabular Data Manager - Open - Does not show correct list of available tabular resources
And now: "Error retrieving TabularResources: com.sun.xml.internal.ws.client.ClientTransportException: The server sent... Anton Ellenbroek
11:32 AM Incident #3206 (Closed): Tabular Data Manager - Open - Does not show correct list of available tabular resources
The list of Tabular resources availalbe to a user is not always the correct one.
e.g. if I try tabular data lab, ...
Anton Ellenbroek
06:54 PM Task #3141: Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
please list the virtual machines to shut-down and then assign the ticket to the @_InfraScience Admin team Pasquale Pagano
03:12 PM Task #3202 (In Progress): add statistical resources to gcube/preprod VO
Roberto Cirillo
10:38 AM Task #3202 (Closed): add statistical resources to gcube/preprod VO
The statistical manager service need a lot of resources for working. All these resources should be added to the /gcub... Roberto Cirillo
02:54 PM Task #2516 (Feedback): Provide RStudio in the e-Infrastructure VREs
the R Studio has been added to stock assessment VRE, see R Studio tab
https://i-marine.d4science.org/group/stockas...
Massimiliano Assante
02:40 PM Support #3234: Fix Notification added items path
the notification type containing the wrong path is of type NotificationType.WP_ITEM_NEW Massimiliano Assante
02:37 PM Support #3234 (Closed): Fix Notification added items path
For the move operation the notification related could contain a wrong path to the folder containing the item starting... Massimiliano Assante
10:34 AM Task #3127 (Closed): Switch statistical-manager-service from "Ecosystem" to "preprod"
Roberto Cirillo
10:34 AM Task #3127 (In Progress): Switch statistical-manager-service from "Ecosystem" to "preprod"
Roberto Cirillo

Apr 11, 2016

06:15 PM Task #3181: Update RStudio on rstudio.d4science.org
GP is asking to complete the upgrade not later than Friday 15th.
Andrea Dell'Amico
06:11 PM Task #3181: Update RStudio on rstudio.d4science.org
Gianpaolo does not need an updated rstudio.d4science.org for his teaching. Let's proceed this way
* update R and r...
Andrea Dell'Amico
05:01 PM Task #3181: Update RStudio on rstudio.d4science.org
Tomorrow there will be a course in Pisa lasting on Thursday. This is one of the service that will be used. I think it... Pasquale Pagano
04:04 PM Task #3181 (Closed): Update RStudio on rstudio.d4science.org
There is a discrepancy between the RStudio installation and the R installation. When starting the RStudio interface o... Gianpaolo Coro
04:30 PM Incident #258 (Closed): TabMan - the files associated to the resources are downloaded without extension
No feedback received, I suppose I can close this one. Fabio Sinibaldi
12:34 PM Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions
db5.p.d4science.research-infrastructures.eu is used by the other Statistical Manager machines and should not be shut ... Gianpaolo Coro
11:36 AM Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions
Yes it can be dismissed. Gianpaolo Coro
11:09 AM Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions
I guess, the statistical-manager service deployed in EUBrazilOpenBio Scope could be removed: #3141
Do you agree, @pa...
Roberto Cirillo
11:55 AM Task #2516 (In Progress): Provide RStudio in the e-Infrastructure VREs
Massimiliano Assante
11:54 AM Task #2516: Provide RStudio in the e-Infrastructure VREs
Dear Massimiliano
thanks for your message. This is fine like this, we can wait and we can work in RStudio through ...
Julien Barde
11:44 AM Task #2516: Provide RStudio in the e-Infrastructure VREs
Dear @julien.barde@ird.fr I understand your point. However, although the Rstudio is already in the TabMan, in order ... Massimiliano Assante

Apr 08, 2016

07:27 PM Task #2227 (In Progress): test replication tools for postgres
The replication scripts need more testing. And we need some automated tools to remove the WAL archives regularly beca... Andrea Dell'Amico
06:14 PM Task #3104 (Feedback): Please install a reverse proxy over dev2.d4science.org
The haproxy configuration is complete, and the SSL certificates installed.
I used the letsencrypt tools for the SS...
Andrea Dell'Amico
06:13 PM Task #3164 (In Progress): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt
We have a preliminary playbook that installs the tools and requests a certificate (with the machine hostname, if some... Andrea Dell'Amico
06:12 PM Task #3164 (Closed): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt

Letsencrypt, https://letsencrypt.org is an initiative that has the goal to guarantee free (and valid, where _valid_...
Andrea Dell'Amico
12:08 PM Task #2174: Dataminer and Statistical Manager packages
#Packages for I2S processes
install.packages("readxl")
Gianpaolo Coro
12:01 PM Task #2516: Provide RStudio in the e-Infrastructure VREs
Dear all,
I will try to clarify our needs.
At this stage, we are executing the R codes we want to deploy on the ...
Julien Barde

Apr 07, 2016

06:25 PM Task #3159 (Closed): Delete whn-manager version from whn-manager war name
Kostas Kakaletris
06:23 PM Task #3159: Delete whn-manager version from whn-manager war name
Roberto Cirillo wrote:
> In order to improve the nagios monitoring for smartgears containers it's need to remove the...
Kostas Kakaletris
03:47 PM Task #3159 (In Progress): Delete whn-manager version from whn-manager war name
Kostas Kakaletris
03:37 PM Task #3159 (Closed): Delete whn-manager version from whn-manager war name
In order to improve the nagios monitoring for smartgears containers it's need to remove the whn-manager version from ... Roberto Cirillo
04:34 PM Task #3104: Please install a reverse proxy over dev2.d4science.org
The VM has been reconfigured and ready to answer on port 8080.
I'm starting the work on the haproxy configuration an...
Andrea Dell'Amico
03:45 PM Task #3104: Please install a reverse proxy over dev2.d4science.org
A complete reinstall is ongoing for `dev2.d4science.org`. It will be configured in the same way of infra-gateway and ... Andrea Dell'Amico
10:16 AM Task #3104 (In Progress): Please install a reverse proxy over dev2.d4science.org
@andrea.dellamico@isti.cnr.it have the https certificates arrived? Massimiliano Assante
03:46 PM Task #3157 (Closed): Improve the nagios check for the Smartgears (not the smart executor ones) nodes
Andrea Dell'Amico
03:40 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes
OK.
Andrea Dell'Amico
03:25 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes
The problem is not the whn-manager version but the whn-manager deployment. The whn-manager has been deployed with the... Roberto Cirillo
02:58 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes
Could it be a problem caused by the whn-manager version? I see that `node31.p.d4science.research-infrastructures.eu` ... Andrea Dell'Amico
02:51 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes
Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > The check is now active. The following hosts seems not to be ...
Andrea Dell'Amico
02:42 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes
Andrea Dell'Amico wrote:
> The check is now active. The following hosts seems not to be running a smartgear service:...
Roberto Cirillo
01:35 PM Task #3157 (In Progress): Improve the nagios check for the Smartgears (not the smart executor ones) nodes
The check is now active. The following hosts seems not to be running a smartgear service:
~~~
dewn03.madgik.di.uo...
Andrea Dell'Amico
01:24 PM Task #3157 (Closed): Improve the nagios check for the Smartgears (not the smart executor ones) nodes
The check needs to get the `/whn-manager/gcube/resource/` URL and search for the `The resource is active` string
Andrea Dell'Amico
03:42 PM Task #850 (Closed): Investigate a new way for check smartgears container by nagios
Never mind. The war installation name was the problem, see #3159 Andrea Dell'Amico
03:02 PM Task #850 (In Progress): Investigate a new way for check smartgears container by nagios
@lucio.lelii@isti.cnr.it Can you thell when the /whn-manager/gcube/resource/ URL was added to the whn-manager? There ... Andrea Dell'Amico
12:37 PM Task #850 (Closed): Investigate a new way for check smartgears container by nagios
Andrea Dell'Amico
03:41 PM Task #3140 (Closed): Improve nagios checks for gCore container
The new check is active for all the gCore nodes.
Andrea Dell'Amico
02:52 PM Task #3140: Improve nagios checks for gCore container
Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > OK, there is one node that's failing the gCore check:
> >
...
Andrea Dell'Amico
02:36 PM Task #3140: Improve nagios checks for gCore container
Andrea Dell'Amico wrote:
> OK, there is one node that's failing the gCore check:
>
> ~~~
> dewn10.madgik.di.uoa....
Roberto Cirillo
01:21 PM Task #3140 (Feedback): Improve nagios checks for gCore container
OK, there is one node that's failing the gCore check:
~~~
dewn10.madgik.di.uoa.gr
~~~
Andrea Dell'Amico
12:48 PM Task #3140 (In Progress): Improve nagios checks for gCore container
My fault, I used the check that should be used to test the gcore nodes. Andrea Dell'Amico
12:44 PM Task #3140: Improve nagios checks for gCore container
Some more:
~~~
node51.p.d4science.research-infrastructures.eu
dewn08.madgik.di.uoa.gr
dl17.di.uoa.gr
~~~
Andrea Dell'Amico
12:39 PM Task #3140 (Feedback): Improve nagios checks for gCore container
It seems that the following nodes aren't smartgears nodes:
~~~
dewn03.madgik.di.uoa.gr
dewn09.madgik.di.uoa.gr
...
Andrea Dell'Amico
12:38 PM Task #3140 (In Progress): Improve nagios checks for gCore container
I switched to the new check all the nodes described as _SMART_ instances on the attachment.
Andrea Dell'Amico
11:36 AM Support #2799: Report Manager - Use of custom script on top of Report Manager
Thanks a lot Massimiliano, i will have a look to JSNI then. Emmanuel Blondel

Apr 06, 2016

07:54 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
I suggest to reconsider the set of SPD plugins, please do take into account that OpenBio was expected to deal with fl... Leonardo Candela
03:06 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
I saved the list containing SpeciesLab users (names, and emails). Perhaps we could invite these users to the new VRE ... Massimiliano Assante
07:42 PM Task #3144: please add the required statman algorithms to EUBrazilOpenBio VRE
Not clear to me the criterion we use to select algorithms. OpenBio was expected to deal with flora ... I see among th... Leonardo Candela
06:05 PM Incident #3149 (Closed): Tabular Data Manager: import CSV gets stuck
The issue have been solved with a restart of the service. The storage library was not loading the correct ServiceEndp... Lucio Lelii
03:04 PM Incident #3149 (Closed): Tabular Data Manager: import CSV gets stuck
and nothing moves... tried to import a CSV file of few lines (34) which was validated but then it gets stuck see scre... Massimiliano Assante
02:57 PM Support #2799 (Closed): Report Manager - Use of custom script on top of Report Manager
Reports Manager has been written in Google Webtool Kit (GWT), therefore embedding custom Javascript is feasible by us... Massimiliano Assante

Apr 05, 2016

05:55 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
I added the Transect runtime to EuBrazilOpenBio VRE and now the transect functionality works correctly in GeoExplorer. Francesco Mangiacrapa
05:22 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
I cannot access to the new OpenBio VRE. I have just sent the request to join it. Lucio Lelii
04:49 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
StatMan now works with several algorithms added. I see issued when drawing transect lines in GeoExplorer (@francesco.... Gianpaolo Coro
04:29 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
The VRE is deployed and ready in services d4science: https://services.d4science.org/group/eubrazilopenbio
@gianpao...
Massimiliano Assante
11:13 AM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure
Aa agreed in the meeting we had about this, we're going to deploy a new VRE named EuBrazilOpenBio under gCubeApps on ... Massimiliano Assante
10:58 AM Task #2756 (In Progress): Dismiss/Restore EuBrazilOpenBio infrastructure
Massimiliano Assante
05:14 PM Task #3127 (Paused): Switch statistical-manager-service from "Ecosystem" to "preprod"
Roberto Cirillo
05:13 PM Task #3130 (Paused): create a wiki for listening the gcube preprod resources
Roberto Cirillo
05:13 PM Task #3130 (In Progress): create a wiki for listening the gcube preprod resources
Roberto Cirillo
05:08 PM Task #850: Investigate a new way for check smartgears container by nagios
I agree with you, this is the right way to check the smartgears container Lucio Lelii
05:06 PM Task #850: Investigate a new way for check smartgears container by nagios
When the container is down, this url return an error. So, I think, this url should be better than the standard check ... Roberto Cirillo
04:50 PM Task #3144 (Closed): please add the required statman algorithms to EUBrazilOpenBio VRE
Gianpaolo Coro
04:40 PM Task #3144 (Closed): please add the required statman algorithms to EUBrazilOpenBio VRE
https://services.d4science.org/group/eubrazilopenbio Massimiliano Assante
04:38 PM Task #3140: Improve nagios checks for gCore container
In attachment a list of containers where the new check is failing. The smartgears hosts in this list should be equipp... Roberto Cirillo
04:32 PM Task #3140 (Closed): Improve nagios checks for gCore container
At this time we have a simple nagios check on container port but this check often is not enough.
For example, if a c...
Roberto Cirillo
04:36 PM Task #3143 (Closed): Create alias of http://eubrazilopenbio.d4science.org pointing to http://services.d4science.org
Massimiliano Assante
04:35 PM Task #3142 (Closed): Dismiss eubrazilopenbio.d4science.org VM
VM hosting the eubrazilopenbio.d4science.org portal can be dismissed, please save a copy of the VM somewhere if poss... Massimiliano Assante
04:32 PM Task #3141 (Closed): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE
EuBrazilOpenBio VO can be dismissed Massimiliano Assante
02:50 PM Task #536: Thredds: tomcat runs as root
The thredds-p-d4s.d4science.org installation works very well. It can be substituted to thredds.d4science.org in the p... Gianpaolo Coro
01:38 PM Task #3133 (Closed): Install monitoring checks on access.d4science.org
nagios is also active.
Andrea Dell'Amico
12:48 PM Task #3133 (In Progress): Install monitoring checks on access.d4science.org
Roberto Cirillo wrote:
> I think we could progressively migrate all checks "port based" to checks "wsdl based" , fo...
Andrea Dell'Amico
12:24 PM Task #3133: Install monitoring checks on access.d4science.org
I think we could progressively migrate all checks "port based" to checks "wsdl based" , for every container gCore in... Roberto Cirillo
12:04 PM Task #3133: Install monitoring checks on access.d4science.org
Yes, the ghnManager is installed on all gCore container Lucio Lelii
12:02 PM Task #3133: Install monitoring checks on access.d4science.org
@lucio.lelii@isti.cnr.it could this solution be generalized for all ghn containers? Roberto Cirillo
11:57 AM Task #3133: Install monitoring checks on access.d4science.org
the simpler solution is to ask for the wsdl of one of the base services in gcore (eg. http://node1.d.d4science.resear... Lucio Lelii
11:55 AM Task #3133: Install monitoring checks on access.d4science.org
If the WSDL lives at a fixed position, the nagios check could try to fetch it.
A call to the IS to check a service t...
Andrea Dell'Amico
11:50 AM Task #3133: Install monitoring checks on access.d4science.org
Unfortunately, I don't have any information about this, especially since this is an old gCube (WSDL-based) service.
...
Gianpaolo Coro
11:44 AM Task #3133: Install monitoring checks on access.d4science.org
Andrea Dell'Amico wrote:
> Munin will be dismissed in a not so distant future, I hope. I'll add the node to the gcor...
Roberto Cirillo
11:34 AM Task #3133: Install monitoring checks on access.d4science.org
Munin will be dismissed in a not so distant future, I hope. I'll add the node to the gcore ganglia cluster.
About ...
Andrea Dell'Amico
10:55 AM Task #3133 (Closed): Install monitoring checks on access.d4science.org
It's need a standard nagios check on port 8080 and to check the memory usage of this host.
What check do you sugge...
Roberto Cirillo
12:09 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail
@anton.ellenbroek@fao.org could you please provide more details on the settings producing the error, e.g. the rule, t... Leonardo Candela
12:02 PM Support #3137 (Closed): Tuna Atlas Tabular Data Manager; Rules fail
Give me an error "WorkerException: Internal operation error"
But maybe this is not related to the rules engine its...
Anton Ellenbroek
11:58 AM Task #3132 (Closed): Increase RAM on access.d4science.org VM
The container has been restarted with the following heap configuration:
~~~
-Xms2048M -Xmx4000M
~~~
Roberto Cirillo
10:24 AM Task #3132: Increase RAM on access.d4science.org VM
If you are ready, you could restart the VM: now it's running in dev environment. After your restart, I'm going to inc... Roberto Cirillo
11:49 AM Incident #3136 (Closed): From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error
If I am in FAO Tuna Atlas, and use "Go To" to go to another VRE, the use of the back button of the browser results in... Anton Ellenbroek
10:22 AM Task #3131: Create a suitable R environment on statistical-pre.d4science.org
Andrea Dell'Amico wrote:
> It failed because an old version of R, with locally compiled additional packages was inst...
Roberto Cirillo
12:30 AM Task #3131 (Feedback): Create a suitable R environment on statistical-pre.d4science.org
The R installation is complete. Andrea Dell'Amico

Apr 04, 2016

07:41 PM Task #3131: Create a suitable R environment on statistical-pre.d4science.org
It failed because an old version of R, with locally compiled additional packages was installed.
I'm running the pl...
Andrea Dell'Amico
07:04 PM Task #3131 (In Progress): Create a suitable R environment on statistical-pre.d4science.org
The installation is on going.
Andrea Dell'Amico
05:55 PM Task #3131: Create a suitable R environment on statistical-pre.d4science.org
yes, it does. As described in the parent ticket Roberto Cirillo
05:43 PM Task #3131: Create a suitable R environment on statistical-pre.d4science.org
Define *suitable*. Does it mean that it needs to be the same of the dev/production statistical manager nodes?
Andrea Dell'Amico
05:40 PM Task #3131 (Closed): Create a suitable R environment on statistical-pre.d4science.org
A new suitable R environment is needed on the following VM:
~~~
statistical-manager-pre.d4science.org
~~~
Th...
Roberto Cirillo
06:58 PM Task #3132 (Feedback): Increase RAM on access.d4science.org VM
Let me know when it can be restarted. Andrea Dell'Amico
06:54 PM Task #3132 (In Progress): Increase RAM on access.d4science.org VM
Andrea Dell'Amico
06:19 PM Task #3132 (Closed): Increase RAM on access.d4science.org VM
I've found a
~~~
java.lang.OutOfMemoryError: Java heap space
~~~
on the gCore container that hosts the data-tr...
Roberto Cirillo
05:10 PM Task #3130 (Closed): create a wiki for listening the gcube preprod resources
The new wiki will be created on the following page:
https://wiki.d4science.org/GCube-Pre-Production_Resources
Roberto Cirillo
04:36 PM Task #3127 (In Progress): Switch statistical-manager-service from "Ecosystem" to "preprod"
Roberto Cirillo
03:19 PM Task #3127 (Closed): Switch statistical-manager-service from "Ecosystem" to "preprod"
In order to populate the "preprod" VO under the "gcube" infrastructure, the statistical service, hosted on "statistic... Roberto Cirillo
03:53 PM Support #3119 (Closed): HomeLIbrary: registering to VRE and VRE Folder problem
The issue has been fixed for BioDiversityLab and TabularDataLab VRE Folder. It was due to a bug removing an administr... Valentina Marioli

Apr 01, 2016

04:40 PM Incident #3114 (Closed): gCube Releases Portlet no longer deployable on Liferay 6.0
The fix has been released see: #3120 and tested on dev: https://dev.d4science.org/group/devvre/gcubereleases Francesco Mangiacrapa
03:07 PM Incident #3114 (Closed): gCube Releases Portlet no longer deployable on Liferay 6.0
it references a wrong DTD version http://www.liferay.com/dtd/liferay-display_6_2_0.dtd Massimiliano Assante
04:34 PM Task #536: Thredds: tomcat runs as root
Tests for this issue are quite long and require attention. I'm currently managing more urgent issues, whose tickets h... Gianpaolo Coro
04:06 PM Task #536: Thredds: tomcat runs as root
Any other progress?
Andrea Dell'Amico
04:31 PM Support #3119 (In Progress): HomeLIbrary: registering to VRE and VRE Folder problem
Valentina Marioli
04:28 PM Support #3119: HomeLIbrary: registering to VRE and VRE Folder problem
I tried with a different user on services.d4science, still on BioDiversityLab VRE, same exception. Massimiliano Assante
04:21 PM Support #3119: HomeLIbrary: registering to VRE and VRE Folder problem
I tried with a different user that has never belonged to BioDiversityLab VRE, same exception. It feels like we have t... Massimiliano Assante
04:19 PM Support #3119: HomeLIbrary: registering to VRE and VRE Folder problem
The same problem happened with BioDiversityLab VRE, I left the VRE and the VRE Folder was removed from my share, then... Massimiliano Assante
04:16 PM Support #3119 (Closed): HomeLIbrary: registering to VRE and VRE Folder problem
I tried to register to TabularDataLab VRE but the VRE Folder was not assigned to me reporting this exception in the l... Massimiliano Assante
03:48 PM Task #1848: Update VREModelerResource.FunctionalityResource
I'm not able to perform this update without a schema and without understand how this resource works. I'm going to ass... Roberto Cirillo
11:40 AM Task #1848: Update VREModelerResource.FunctionalityResource
Is there a xml schema for "VREModelerResource.FunctionalityResource" resource? Roberto Cirillo
12:00 PM Task #3109 (Closed): VREModeler: nightly restart
A cronjob should be added for restarting the VREModeler service instances. The service should be restarted every sat... Roberto Cirillo

Mar 31, 2016

01:45 PM Task #3105 (Closed): The dev portals need to be able to send email
Andrea Dell'Amico
01:45 PM Task #3105 (In Progress): The dev portals need to be able to send email
Reconfigured the local postfix instances to use smtp-relay.research-infrastructures.eu, with authentication.
Andrea Dell'Amico
01:44 PM Task #3105 (Closed): The dev portals need to be able to send email
Right now they are configured to directly talk with the isti SMTP server without authentication, so they can only del... Andrea Dell'Amico
01:13 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
Done.
Andrea Dell'Amico
12:55 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
yes please
Massimiliano Assante
12:42 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
Massimiliano Assante wrote:
> I don't have access to infra-gateway via ssh, not as root, nor as life user
Sorry,...
Andrea Dell'Amico
12:38 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
I don't have access to infra-gateway via ssh, not as root, nor as life user
~~~
nb-assante:~ massi$ ssh life@i...
Massimiliano Assante
12:36 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
thank you Andrea, we will start the service asap. I don't plan to have any caching server (eg. varnish) in front of l... Massimiliano Assante
12:49 PM Task #3104 (Closed): Please install a reverse proxy over dev2.d4science.org
Currently the tomcat 7 installation on dev2.d4science.org runs over 8080 port. We should move to https and use a reve... Massimiliano Assante
12:35 PM Task #2698 (Closed): enhance dev2.d4science.org VM performance
tommaso switched the disk to a quicker unit and performances have increased (a bit). I consider this sufficient for t... Massimiliano Assante
12:16 PM Upgrade #1956 (Invalid): gCubeApps VO upgrade to gCube 3.10.0
Massimiliano Assante wrote:
> @roberto.cirillo@isti.cnr.it i think this ticket can be closed?
Yes, of course. Thi...
Roberto Cirillo
11:46 AM Upgrade #1956: gCubeApps VO upgrade to gCube 3.10.0
@roberto.cirillo@isti.cnr.it i think this ticket can be closed? Massimiliano Assante

Mar 30, 2016

02:54 PM Task #2192 (Closed): Gcc and boost installation
Andrea Dell'Amico
02:53 PM Task #2192: Gcc and boost installation
Yes you can, thank you. Gianpaolo Coro
02:52 PM Task #2192: Gcc and boost installation
May I close it? A new one should be opened with the installation instructions into the definitive place.
Andrea Dell'Amico
02:50 PM Support #2134 (Closed): Enhancing Statistical Manager performance
An agreement was reached, see https://support.d4science.org/issues/3070
Andrea Dell'Amico
11:03 AM Support #2134: Enhancing Statistical Manager performance
It's ok for me Roberto Cirillo
02:49 PM Task #3070 (Closed): Provide a way of starting and stopping a list of VMs by some users
A web page with a fixed - and checkable - list of hosts should be sufficient.
Associated actions (via a simple cgi...
Andrea Dell'Amico

Mar 26, 2016

10:47 PM Task #2705 (In Progress): Create new VM for production Infrastructure Gateway (Liferay 6.2)
On db-gateway.d4science.org postgresql 9.4 is running. There's a db defined named `infra_liferay`. The db username is... Andrea Dell'Amico

Mar 25, 2016

06:43 PM Task #3064: Investigate the installation of an identity manager
A possibile candidate: https://evolveum.com/midpoint/ Andrea Dell'Amico
06:42 PM Task #3064 (Closed): Investigate the installation of an identity manager
It could be a way to eliminate manage.research-infrastructures.eu and integrate the ldap data from the portals with r... Andrea Dell'Amico
04:41 PM Support #2134: Enhancing Statistical Manager performance
Today we have had a short meeting and it seems that a self service tool can be built to allow people turn machines on... Gianpaolo Coro

Mar 24, 2016

03:41 PM Support #2134: Enhancing Statistical Manager performance
I believe that the static allocation of resources to services is something is going to constraint us too much. Hopefu... Pasquale Pagano
01:51 PM Support #2134: Enhancing Statistical Manager performance
Gianpaolo Coro wrote:
> You're right, this is not the place to talk about the mandates of the projects we are involv...
Andrea Dell'Amico
01:38 PM Support #2134: Enhancing Statistical Manager performance
You're right, this is not the place to talk about the mandates of the projects we are involved in, you should have al... Gianpaolo Coro
01:18 PM Support #2134: Enhancing Statistical Manager performance
I lied. The last question is: why you expose the _mandatory_ requirement as argument only after days of discussion?
...
Andrea Dell'Amico
01:13 PM Support #2134: Enhancing Statistical Manager performance
Gianpaolo Coro wrote:
> So we are stuck. Our platforms has been involved in projects that require embedding software...
Andrea Dell'Amico
01:00 PM Support #2134: Enhancing Statistical Manager performance
So we are stuck. Our platforms has been involved in projects that require embedding software produced by other people... Gianpaolo Coro
12:49 PM Support #2134: Enhancing Statistical Manager performance
Gianpaolo Coro wrote:
> On the dataminer nodes (both dev and prod, see my comment above). Most of the jobs run in th...
Andrea Dell'Amico
12:42 PM Support #2134: Enhancing Statistical Manager performance
On the dataminer nodes (both dev and prod, see my comment above). Most of the jobs run in the JDK heap thus this shou... Gianpaolo Coro
12:38 PM Support #2134: Enhancing Statistical Manager performance
On what? prodution dataminer nodes? devel dataminer nodes? and what about the JDK heap? Do the jobs run inside or out... Andrea Dell'Amico
12:30 PM Support #2134: Enhancing Statistical Manager performance
Let's start rising RAM to 16 GB Gianpaolo Coro
12:22 PM Support #2134: Enhancing Statistical Manager performance
Gianpaolo Coro wrote:
> 16 CPUs or cores should be sufficient if these were averagely free.
(16 * (2 dataminer no...
Andrea Dell'Amico
02:20 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
All the Software is still to be installed. Tommaso Piccioli
02:18 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)
Let's start with two base machines:
infra-gateway.d4science.org Cores: 4, RAM: 5GB, disk: 16GB+100GB (/tmp)
db-g...
Tommaso Piccioli
12:04 PM Task #2764 (Closed): OrientDB installation
Tommaso Piccioli
11:48 AM Task #2764: OrientDB installation
Lucio and Luca can access with ssh to the user orientdb and start the orientdb console,
from our networks you can a...
Tommaso Piccioli
09:33 AM Task #2764 (In Progress): OrientDB installation
I can't login.
Actually I don't know how to configure it. Can you please provide the default configuration, we will ...
Luca Frosini
10:37 AM Upgrade #2461 (Planned): D4Science Infrastructure Upgrade to gCube 3.10.1
Roberto Cirillo

Mar 23, 2016

11:09 PM Support #2134: Enhancing Statistical Manager performance
16 CPUs or cores should be sufficient if these were averagely free.
16 GB of RAM comes from the fact that one of the...
Gianpaolo Coro
06:14 PM Support #2134: Enhancing Statistical Manager performance
Waiting for Tom for the operations.
But we really need some data, because your `top` output is completely useless.
...
Andrea Dell'Amico
05:57 PM Support #2134: Enhancing Statistical Manager performance
Please, could you update me about this ticket? Is there any possibility to have more powerful machines for Dataminer ... Gianpaolo Coro
06:34 PM Upgrade #2462 (Completed): gCubeApps VO upgrade to gCube 3.10.1
Roberto Cirillo
06:33 PM Upgrade #2462 (In Progress): gCubeApps VO upgrade to gCube 3.10.1
Roberto Cirillo
06:31 PM Upgrade #2714 (Completed): D4Science Root VO upgrade to gCube 3.10.1
Roberto Cirillo
06:31 PM Upgrade #2714 (In Progress): D4Science Root VO upgrade to gCube 3.10.1
Roberto Cirillo
05:25 PM Task #536 (Feedback): Thredds: tomcat runs as root
The data-transfer service has been installed (under gcube user) and it is running on devsec scope for testing purpose... Roberto Cirillo
04:53 PM Task #536: Thredds: tomcat runs as root
The ghn will be installed with the user gcube, as it is on the dev machine thredds-d-d4s.d4science.org Tommaso Piccioli
04:06 PM Task #536: Thredds: tomcat runs as root
Could anyone add another user called gcube1 on thredds-p-d4s?
The gcube user is used by tomcat. I think it's better ...
Roberto Cirillo
02:53 PM Task #536 (In Progress): Thredds: tomcat runs as root
It seems that the switch did not happen, the old machine is still active.
Andrea Dell'Amico
02:29 PM Task #2946 (Closed): Install ganglia and the local nagios checks on thredds-p-d4s.d4science.org
What cluster on Ganglia? Andrea Dell'Amico
02:25 PM Task #2764 (Closed): OrientDB installation
orientdb0-d-d4s.d4science.org
You can ssh login as user orientdb
configure orientdb server in /home/orientdb/orie...
Tommaso Piccioli

Mar 22, 2016

07:25 PM Task #2921 (Closed): Please reduce log on couchdb
Thanks a lot Luca Frosini
07:12 PM Task #2921 (Feedback): Please reduce log on couchdb
The log level has been reset to `info` on `couchdb01-d-d4s.d4science.org`
Andrea Dell'Amico
07:11 PM Task #2921 (In Progress): Please reduce log on couchdb
The log level is already set as info by the playbook.
On the production servers, were the logs are at `info` level...
Andrea Dell'Amico
06:48 PM Task #2921 (Closed): Please reduce log on couchdb
Couchdb log level is very low. This create a huge amount of log.
Please modify the ansible script to set couchdb log...
Luca Frosini
07:00 PM Task #2922 (Closed): Dismiss couchdb instance available at http://accounting-d4s.d4science.org:5984/
Done. Andrea Dell'Amico
07:00 PM Task #2922 (In Progress): Dismiss couchdb instance available at http://accounting-d4s.d4science.org:5984/
Andrea Dell'Amico
06:51 PM Task #2922 (Closed): Dismiss couchdb instance available at http://accounting-d4s.d4science.org:5984/
Please do not confuse the couchdb instance with the haproxy instance on accounting-d4s.d4science.org deployed on port... Luca Frosini
06:00 PM Task #2892 (Feedback): Provide SoBigData colleagues with details for interfacing with LDAP
Andrea Dell'Amico
05:59 PM Task #2892 (In Progress): Provide SoBigData colleagues with details for interfacing with LDAP
Andrea Dell'Amico
02:58 PM Task #2892 (Closed): Provide SoBigData colleagues with details for interfacing with LDAP
Please provide @vittorio.romano@isti.cnr.it with details enabling to interface with the LDAP group associated with th... Leonardo Candela
04:59 PM Incident #2903 (Closed): Workspace Explorer: save dialog bug if a folder is selected
The fix has been released in dev environment and it will be released in production for gCube 3.10.1 update Francesco Mangiacrapa
04:37 PM Incident #2903 (Closed): Workspace Explorer: save dialog bug if a folder is selected
Workspace Explorer save dialog doesn't hide the popup and doesn't send the save event (to listeners) if a folder is s... Francesco Mangiacrapa
04:52 PM Task #2227 (Feedback): test replication tools for postgres
Andrea Dell'Amico
04:52 PM Task #2192 (Feedback): Gcc and boost installation
Andrea Dell'Amico
04:52 PM Task #2192 (In Progress): Gcc and boost installation
Andrea Dell'Amico
04:09 PM Task #2192: Gcc and boost installation
Gianpaolo Coro wrote:
> Just one note: to make quickrank compile correctly, the required compilator version is g++ 5...
Andrea Dell'Amico
04:07 PM Task #2192: Gcc and boost installation
Just one note: to make quickrank compile correctly, the required compilator version is g++ 5 Gianpaolo Coro

Mar 21, 2016

06:37 PM Task #2784 (Closed): nagios, ganglia: add credentials to mongodb checks
Ganglia is working again too.
Andrea Dell'Amico
05:34 PM Task #2784: nagios, ganglia: add credentials to mongodb checks
For the future: the arbiter does not work against authentication in the same way the other mongo servers do. So I dis... Andrea Dell'Amico
05:17 PM Task #2784 (In Progress): nagios, ganglia: add credentials to mongodb checks
The nagios part is OK. Andrea Dell'Amico
04:21 PM Task #2784: nagios, ganglia: add credentials to mongodb checks
Andrea Dell'Amico wrote:
> I see that mongo1 (the arbiter?) now fails for every check.
Yes, mongo1 is the arbiter
Roberto Cirillo
04:17 PM Task #2784: nagios, ganglia: add credentials to mongodb checks
I see that mongo1 (the arbiter?) now fails for every check.
Andrea Dell'Amico
04:16 PM Task #2784: nagios, ganglia: add credentials to mongodb checks
About nagios: the checked functionalities are:
~~~
if action == "connections":
elif action == "replicati...
Andrea Dell'Amico
03:18 PM Task #2784: nagios, ganglia: add credentials to mongodb checks
Yes, of course. You can find the credentials on "mongo1-p-d4s.d4science.org" under /root/README. Roberto Cirillo
02:49 PM Task #2784: nagios, ganglia: add credentials to mongodb checks
How? Is there a user/password that nagios (and ganglia) can use to only access the data they need to read?
Andrea Dell'Amico
11:08 AM Task #2784 (Closed): nagios, ganglia: add credentials to mongodb checks
Since last friday, it's need to be authenticated for performing mongodb checks Roberto Cirillo
05:36 PM Task #2764: OrientDB installation
Install how-to can be found here
http://orientdb.com/docs/last/Unix-Service.html
Luca Frosini
02:49 PM Task #2261: Better check for data.d4science.org availability
Andrea Dell'Amico wrote:
> @roberto.cirillo@isti.cnr.it @francesco.mangiacrapa@isti.cnr.it can you provide such URLs...
Andrea Dell'Amico
02:25 PM Task #2774 (Feedback): Configure the mysql and postgresql local backups to not run if the remote backup is active

Both the postgresql and mysql backup cron jobs have been changed.
Andrea Dell'Amico
02:06 PM Task #2774 (In Progress): Configure the mysql and postgresql local backups to not run if the remote backup is active
Andrea Dell'Amico
02:23 PM Task #2775: Configure backuppc to run the local DB backup scripts and write the backup status on the remote host
Andrea Dell'Amico wrote:
> BackupPC can be globally configured to run mysql/postgresql backups as a pre-step.
>
>...
Andrea Dell'Amico
12:34 PM Support #2799 (Closed): Report Manager - Use of custom script on top of Report Manager
Hi, Is it possible (and if yes, how difficult it would be) to let the Report Manager execute a custom javascript?
Fo...
Emmanuel Blondel
12:08 PM Task #2122 (Closed): enable external and internal authentication on mongodb
Roberto Cirillo
12:08 PM Task #2122 (In Progress): enable external and internal authentication on mongodb
Roberto Cirillo
12:07 PM Task #2123 (Closed): Edit the Storage-manager service endpoint
Roberto Cirillo
12:07 PM Task #2123 (In Progress): Edit the Storage-manager service endpoint
Roberto Cirillo
 

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