D4Science Infrastructure

Apr 11, 2016

06:15 PM Task #3181: Update RStudio on rstudio.d4science.org

GP is asking to complete the upgrade not later than Friday 15th.
Andrea Dell'Amico

06:11 PM Task #3181: Update RStudio on rstudio.d4science.org

Gianpaolo does not need an updated rstudio.d4science.org for his teaching. Let's proceed this way
* update R and r... Andrea Dell'Amico

05:01 PM Task #3181: Update RStudio on rstudio.d4science.org

Tomorrow there will be a course in Pisa lasting on Thursday. This is one of the service that will be used. I think it... Pasquale Pagano

04:04 PM Task #3181 (Closed): Update RStudio on rstudio.d4science.org

There is a discrepancy between the RStudio installation and the R installation. When starting the RStudio interface o... Gianpaolo Coro

04:30 PM Incident #258 (Closed): TabMan - the files associated to the resources are downloaded without extension

No feedback received, I suppose I can close this one. Fabio Sinibaldi

12:34 PM Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions

db5.p.d4science.research-infrastructures.eu is used by the other Statistical Manager machines and should not be shut ... Gianpaolo Coro

11:36 AM Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions

Yes it can be dismissed. Gianpaolo Coro

11:09 AM Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions

I guess, the statistical-manager service deployed in EUBrazilOpenBio Scope could be removed: #3141
Do you agree, @pa... Roberto Cirillo

11:55 AM Task #2516 (In Progress): Provide RStudio in the e-Infrastructure VREs

Massimiliano Assante

11:54 AM Task #2516: Provide RStudio in the e-Infrastructure VREs

Dear Massimiliano
thanks for your message. This is fine like this, we can wait and we can work in RStudio through ... Julien Barde

11:44 AM Task #2516: Provide RStudio in the e-Infrastructure VREs

Dear @julien.barde@ird.fr I understand your point. However, although the Rstudio is already in the TabMan, in order ... Massimiliano Assante

Apr 08, 2016

07:27 PM Task #2227 (In Progress): test replication tools for postgres

The replication scripts need more testing. And we need some automated tools to remove the WAL archives regularly beca... Andrea Dell'Amico

06:14 PM Task #3104 (Feedback): Please install a reverse proxy over dev2.d4science.org

The haproxy configuration is complete, and the SSL certificates installed.
I used the letsencrypt tools for the SS... Andrea Dell'Amico

06:13 PM Task #3164 (In Progress): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt

We have a preliminary playbook that installs the tools and requests a certificate (with the machine hostname, if some... Andrea Dell'Amico

06:12 PM Task #3164 (Closed): Investigate the procedures needed to obtain valid X.509 TLS certificates from letsencrypt

Letsencrypt, https://letsencrypt.org is an initiative that has the goal to guarantee free (and valid, where _valid_... Andrea Dell'Amico

12:08 PM Task #2174: Dataminer and Statistical Manager packages

#Packages for I2S processes
install.packages("readxl") Gianpaolo Coro

12:01 PM Task #2516: Provide RStudio in the e-Infrastructure VREs

Dear all,
I will try to clarify our needs.
At this stage, we are executing the R codes we want to deploy on the ... Julien Barde

Apr 07, 2016

06:25 PM Task #3159 (Closed): Delete whn-manager version from whn-manager war name

Kostas Kakaletris

06:23 PM Task #3159: Delete whn-manager version from whn-manager war name

Roberto Cirillo wrote:
> In order to improve the nagios monitoring for smartgears containers it's need to remove the... Kostas Kakaletris

03:47 PM Task #3159 (In Progress): Delete whn-manager version from whn-manager war name

Kostas Kakaletris

03:37 PM Task #3159 (Closed): Delete whn-manager version from whn-manager war name

In order to improve the nagios monitoring for smartgears containers it's need to remove the whn-manager version from ... Roberto Cirillo

04:34 PM Task #3104: Please install a reverse proxy over dev2.d4science.org

The VM has been reconfigured and ready to answer on port 8080.
I'm starting the work on the haproxy configuration an... Andrea Dell'Amico

03:45 PM Task #3104: Please install a reverse proxy over dev2.d4science.org

A complete reinstall is ongoing for `dev2.d4science.org`. It will be configured in the same way of infra-gateway and ... Andrea Dell'Amico

10:16 AM Task #3104 (In Progress): Please install a reverse proxy over dev2.d4science.org

@andrea.dellamico@isti.cnr.it have the https certificates arrived? Massimiliano Assante

03:46 PM Task #3157 (Closed): Improve the nagios check for the Smartgears (not the smart executor ones) nodes

Andrea Dell'Amico

03:40 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

OK.
Andrea Dell'Amico

03:25 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

The problem is not the whn-manager version but the whn-manager deployment. The whn-manager has been deployed with the... Roberto Cirillo

02:58 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

Could it be a problem caused by the whn-manager version? I see that `node31.p.d4science.research-infrastructures.eu` ... Andrea Dell'Amico

02:51 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > The check is now active. The following hosts seems not to be ... Andrea Dell'Amico

02:42 PM Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

Andrea Dell'Amico wrote:
> The check is now active. The following hosts seems not to be running a smartgear service:... Roberto Cirillo

01:35 PM Task #3157 (In Progress): Improve the nagios check for the Smartgears (not the smart executor ones) nodes

The check is now active. The following hosts seems not to be running a smartgear service:
~~~
dewn03.madgik.di.uo... Andrea Dell'Amico

01:24 PM Task #3157 (Closed): Improve the nagios check for the Smartgears (not the smart executor ones) nodes

The check needs to get the `/whn-manager/gcube/resource/` URL and search for the `The resource is active` string
Andrea Dell'Amico

03:42 PM Task #850 (Closed): Investigate a new way for check smartgears container by nagios

Never mind. The war installation name was the problem, see #3159 Andrea Dell'Amico

03:02 PM Task #850 (In Progress): Investigate a new way for check smartgears container by nagios

@lucio.lelii@isti.cnr.it Can you thell when the /whn-manager/gcube/resource/ URL was added to the whn-manager? There ... Andrea Dell'Amico

12:37 PM Task #850 (Closed): Investigate a new way for check smartgears container by nagios

Andrea Dell'Amico

03:41 PM Task #3140 (Closed): Improve nagios checks for gCore container

The new check is active for all the gCore nodes.
Andrea Dell'Amico

02:52 PM Task #3140: Improve nagios checks for gCore container

Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > OK, there is one node that's failing the gCore check:
> >
... Andrea Dell'Amico

02:36 PM Task #3140: Improve nagios checks for gCore container

Andrea Dell'Amico wrote:
> OK, there is one node that's failing the gCore check:
>
> ~~~
> dewn10.madgik.di.uoa.... Roberto Cirillo

01:21 PM Task #3140 (Feedback): Improve nagios checks for gCore container

OK, there is one node that's failing the gCore check:
~~~
dewn10.madgik.di.uoa.gr
~~~ Andrea Dell'Amico

12:48 PM Task #3140 (In Progress): Improve nagios checks for gCore container

My fault, I used the check that should be used to test the gcore nodes. Andrea Dell'Amico

12:44 PM Task #3140: Improve nagios checks for gCore container

Some more:
~~~
node51.p.d4science.research-infrastructures.eu
dewn08.madgik.di.uoa.gr
dl17.di.uoa.gr
~~~ Andrea Dell'Amico

12:39 PM Task #3140 (Feedback): Improve nagios checks for gCore container

It seems that the following nodes aren't smartgears nodes:
~~~
dewn03.madgik.di.uoa.gr
dewn09.madgik.di.uoa.gr
... Andrea Dell'Amico

12:38 PM Task #3140 (In Progress): Improve nagios checks for gCore container

I switched to the new check all the nodes described as _SMART_ instances on the attachment.
Andrea Dell'Amico

11:36 AM Support #2799: Report Manager - Use of custom script on top of Report Manager

Thanks a lot Massimiliano, i will have a look to JSNI then. Emmanuel Blondel

Apr 06, 2016

07:54 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

I suggest to reconsider the set of SPD plugins, please do take into account that OpenBio was expected to deal with fl... Leonardo Candela

03:06 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

I saved the list containing SpeciesLab users (names, and emails). Perhaps we could invite these users to the new VRE ... Massimiliano Assante

07:42 PM Task #3144: please add the required statman algorithms to EUBrazilOpenBio VRE

Not clear to me the criterion we use to select algorithms. OpenBio was expected to deal with flora ... I see among th... Leonardo Candela

06:05 PM Incident #3149 (Closed): Tabular Data Manager: import CSV gets stuck

The issue have been solved with a restart of the service. The storage library was not loading the correct ServiceEndp... Lucio Lelii

03:04 PM Incident #3149 (Closed): Tabular Data Manager: import CSV gets stuck

and nothing moves... tried to import a CSV file of few lines (34) which was validated but then it gets stuck see scre... Massimiliano Assante

02:57 PM Support #2799 (Closed): Report Manager - Use of custom script on top of Report Manager

Reports Manager has been written in Google Webtool Kit (GWT), therefore embedding custom Javascript is feasible by us... Massimiliano Assante

Apr 05, 2016

05:55 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

I added the Transect runtime to EuBrazilOpenBio VRE and now the transect functionality works correctly in GeoExplorer. Francesco Mangiacrapa

05:22 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

I cannot access to the new OpenBio VRE. I have just sent the request to join it. Lucio Lelii

04:49 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

StatMan now works with several algorithms added. I see issued when drawing transect lines in GeoExplorer (@francesco.... Gianpaolo Coro

04:29 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

The VRE is deployed and ready in services d4science: https://services.d4science.org/group/eubrazilopenbio
@gianpao... Massimiliano Assante

11:13 AM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

Aa agreed in the meeting we had about this, we're going to deploy a new VRE named EuBrazilOpenBio under gCubeApps on ... Massimiliano Assante

10:58 AM Task #2756 (In Progress): Dismiss/Restore EuBrazilOpenBio infrastructure

Massimiliano Assante

05:14 PM Task #3127 (Paused): Switch statistical-manager-service from "Ecosystem" to "preprod"

Roberto Cirillo

05:13 PM Task #3130 (Paused): create a wiki for listening the gcube preprod resources

Roberto Cirillo

05:13 PM Task #3130 (In Progress): create a wiki for listening the gcube preprod resources

Roberto Cirillo

05:08 PM Task #850: Investigate a new way for check smartgears container by nagios

I agree with you, this is the right way to check the smartgears container Lucio Lelii

05:06 PM Task #850: Investigate a new way for check smartgears container by nagios

When the container is down, this url return an error. So, I think, this url should be better than the standard check ... Roberto Cirillo

04:50 PM Task #3144 (Closed): please add the required statman algorithms to EUBrazilOpenBio VRE

Gianpaolo Coro

04:40 PM Task #3144 (Closed): please add the required statman algorithms to EUBrazilOpenBio VRE

https://services.d4science.org/group/eubrazilopenbio Massimiliano Assante

04:38 PM Task #3140: Improve nagios checks for gCore container

In attachment a list of containers where the new check is failing. The smartgears hosts in this list should be equipp... Roberto Cirillo

04:32 PM Task #3140 (Closed): Improve nagios checks for gCore container

At this time we have a simple nagios check on container port but this check often is not enough.
For example, if a c... Roberto Cirillo

04:36 PM Task #3143 (Closed): Create alias of http://eubrazilopenbio.d4science.org pointing to http://services.d4science.org

Massimiliano Assante

04:35 PM Task #3142 (Closed): Dismiss eubrazilopenbio.d4science.org VM

VM hosting the eubrazilopenbio.d4science.org portal can be dismissed, please save a copy of the VM somewhere if poss... Massimiliano Assante

04:32 PM Task #3141 (Closed): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE

EuBrazilOpenBio VO can be dismissed Massimiliano Assante

02:50 PM Task #536: Thredds: tomcat runs as root

The thredds-p-d4s.d4science.org installation works very well. It can be substituted to thredds.d4science.org in the p... Gianpaolo Coro

01:38 PM Task #3133 (Closed): Install monitoring checks on access.d4science.org

nagios is also active.
Andrea Dell'Amico

12:48 PM Task #3133 (In Progress): Install monitoring checks on access.d4science.org

Roberto Cirillo wrote:
> I think we could progressively migrate all checks "port based" to checks "wsdl based" , fo... Andrea Dell'Amico

12:24 PM Task #3133: Install monitoring checks on access.d4science.org

I think we could progressively migrate all checks "port based" to checks "wsdl based" , for every container gCore in... Roberto Cirillo

12:04 PM Task #3133: Install monitoring checks on access.d4science.org

Yes, the ghnManager is installed on all gCore container Lucio Lelii

12:02 PM Task #3133: Install monitoring checks on access.d4science.org

@lucio.lelii@isti.cnr.it could this solution be generalized for all ghn containers? Roberto Cirillo

11:57 AM Task #3133: Install monitoring checks on access.d4science.org

the simpler solution is to ask for the wsdl of one of the base services in gcore (eg. http://node1.d.d4science.resear... Lucio Lelii

11:55 AM Task #3133: Install monitoring checks on access.d4science.org

If the WSDL lives at a fixed position, the nagios check could try to fetch it.
A call to the IS to check a service t... Andrea Dell'Amico

11:50 AM Task #3133: Install monitoring checks on access.d4science.org

Unfortunately, I don't have any information about this, especially since this is an old gCube (WSDL-based) service.
... Gianpaolo Coro

11:44 AM Task #3133: Install monitoring checks on access.d4science.org

Andrea Dell'Amico wrote:
> Munin will be dismissed in a not so distant future, I hope. I'll add the node to the gcor... Roberto Cirillo

11:34 AM Task #3133: Install monitoring checks on access.d4science.org

Munin will be dismissed in a not so distant future, I hope. I'll add the node to the gcore ganglia cluster.
About ... Andrea Dell'Amico

10:55 AM Task #3133 (Closed): Install monitoring checks on access.d4science.org

It's need a standard nagios check on port 8080 and to check the memory usage of this host.
What check do you sugge... Roberto Cirillo

12:09 PM Support #3137: Tuna Atlas Tabular Data Manager; Rules fail

@anton.ellenbroek@fao.org could you please provide more details on the settings producing the error, e.g. the rule, t... Leonardo Candela

12:02 PM Support #3137 (Closed): Tuna Atlas Tabular Data Manager; Rules fail

Give me an error "WorkerException: Internal operation error"
But maybe this is not related to the rules engine its... Anton Ellenbroek

11:58 AM Task #3132 (Closed): Increase RAM on access.d4science.org VM

The container has been restarted with the following heap configuration:
~~~
-Xms2048M -Xmx4000M
~~~ Roberto Cirillo

10:24 AM Task #3132: Increase RAM on access.d4science.org VM

If you are ready, you could restart the VM: now it's running in dev environment. After your restart, I'm going to inc... Roberto Cirillo

11:49 AM Incident #3136 (Closed): From Tabular data lab I move to another VRE, then using the browser "Back" button returns an error

If I am in FAO Tuna Atlas, and use "Go To" to go to another VRE, the use of the back button of the browser results in... Anton Ellenbroek

10:22 AM Task #3131: Create a suitable R environment on statistical-pre.d4science.org

Andrea Dell'Amico wrote:
> It failed because an old version of R, with locally compiled additional packages was inst... Roberto Cirillo

12:30 AM Task #3131 (Feedback): Create a suitable R environment on statistical-pre.d4science.org

The R installation is complete. Andrea Dell'Amico

Apr 04, 2016

07:41 PM Task #3131: Create a suitable R environment on statistical-pre.d4science.org

It failed because an old version of R, with locally compiled additional packages was installed.
I'm running the pl... Andrea Dell'Amico

07:04 PM Task #3131 (In Progress): Create a suitable R environment on statistical-pre.d4science.org

The installation is on going.
Andrea Dell'Amico

05:55 PM Task #3131: Create a suitable R environment on statistical-pre.d4science.org

yes, it does. As described in the parent ticket Roberto Cirillo

05:43 PM Task #3131: Create a suitable R environment on statistical-pre.d4science.org

Define *suitable*. Does it mean that it needs to be the same of the dev/production statistical manager nodes?
Andrea Dell'Amico

05:40 PM Task #3131 (Closed): Create a suitable R environment on statistical-pre.d4science.org

A new suitable R environment is needed on the following VM:
~~~
statistical-manager-pre.d4science.org
~~~
Th... Roberto Cirillo

06:58 PM Task #3132 (Feedback): Increase RAM on access.d4science.org VM

Let me know when it can be restarted. Andrea Dell'Amico

06:54 PM Task #3132 (In Progress): Increase RAM on access.d4science.org VM

Andrea Dell'Amico

06:19 PM Task #3132 (Closed): Increase RAM on access.d4science.org VM

I've found a
~~~
java.lang.OutOfMemoryError: Java heap space
~~~
on the gCore container that hosts the data-tr... Roberto Cirillo

05:10 PM Task #3130 (Closed): create a wiki for listening the gcube preprod resources

The new wiki will be created on the following page:
https://wiki.d4science.org/GCube-Pre-Production_Resources Roberto Cirillo

04:36 PM Task #3127 (In Progress): Switch statistical-manager-service from "Ecosystem" to "preprod"

Roberto Cirillo

03:19 PM Task #3127 (Closed): Switch statistical-manager-service from "Ecosystem" to "preprod"

In order to populate the "preprod" VO under the "gcube" infrastructure, the statistical service, hosted on "statistic... Roberto Cirillo

03:53 PM Support #3119 (Closed): HomeLIbrary: registering to VRE and VRE Folder problem

The issue has been fixed for BioDiversityLab and TabularDataLab VRE Folder. It was due to a bug removing an administr... Valentina Marioli

Apr 01, 2016

04:40 PM Incident #3114 (Closed): gCube Releases Portlet no longer deployable on Liferay 6.0

The fix has been released see: #3120 and tested on dev: https://dev.d4science.org/group/devvre/gcubereleases Francesco Mangiacrapa

03:07 PM Incident #3114 (Closed): gCube Releases Portlet no longer deployable on Liferay 6.0

it references a wrong DTD version http://www.liferay.com/dtd/liferay-display_6_2_0.dtd Massimiliano Assante

04:34 PM Task #536: Thredds: tomcat runs as root

Tests for this issue are quite long and require attention. I'm currently managing more urgent issues, whose tickets h... Gianpaolo Coro

04:06 PM Task #536: Thredds: tomcat runs as root

Any other progress?
Andrea Dell'Amico

04:31 PM Support #3119 (In Progress): HomeLIbrary: registering to VRE and VRE Folder problem

Valentina Marioli

04:28 PM Support #3119: HomeLIbrary: registering to VRE and VRE Folder problem

I tried with a different user on services.d4science, still on BioDiversityLab VRE, same exception. Massimiliano Assante

04:21 PM Support #3119: HomeLIbrary: registering to VRE and VRE Folder problem

I tried with a different user that has never belonged to BioDiversityLab VRE, same exception. It feels like we have t... Massimiliano Assante

04:19 PM Support #3119: HomeLIbrary: registering to VRE and VRE Folder problem

The same problem happened with BioDiversityLab VRE, I left the VRE and the VRE Folder was removed from my share, then... Massimiliano Assante

04:16 PM Support #3119 (Closed): HomeLIbrary: registering to VRE and VRE Folder problem

I tried to register to TabularDataLab VRE but the VRE Folder was not assigned to me reporting this exception in the l... Massimiliano Assante

03:48 PM Task #1848: Update VREModelerResource.FunctionalityResource

I'm not able to perform this update without a schema and without understand how this resource works. I'm going to ass... Roberto Cirillo

11:40 AM Task #1848: Update VREModelerResource.FunctionalityResource

Is there a xml schema for "VREModelerResource.FunctionalityResource" resource? Roberto Cirillo

12:00 PM Task #3109 (Closed): VREModeler: nightly restart

A cronjob should be added for restarting the VREModeler service instances. The service should be restarted every sat... Roberto Cirillo

Mar 31, 2016

01:45 PM Task #3105 (Closed): The dev portals need to be able to send email

Andrea Dell'Amico

01:45 PM Task #3105 (In Progress): The dev portals need to be able to send email

Reconfigured the local postfix instances to use smtp-relay.research-infrastructures.eu, with authentication.
Andrea Dell'Amico

01:44 PM Task #3105 (Closed): The dev portals need to be able to send email

Right now they are configured to directly talk with the isti SMTP server without authentication, so they can only del... Andrea Dell'Amico

01:13 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Done.
Andrea Dell'Amico

12:55 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

yes please
Massimiliano Assante

12:42 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Massimiliano Assante wrote:
> I don't have access to infra-gateway via ssh, not as root, nor as life user
Sorry,... Andrea Dell'Amico

12:38 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

I don't have access to infra-gateway via ssh, not as root, nor as life user
~~~
nb-assante:~ massi$ ssh life@i... Massimiliano Assante

12:36 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

thank you Andrea, we will start the service asap. I don't plan to have any caching server (eg. varnish) in front of l... Massimiliano Assante

12:49 PM Task #3104 (Closed): Please install a reverse proxy over dev2.d4science.org

Currently the tomcat 7 installation on dev2.d4science.org runs over 8080 port. We should move to https and use a reve... Massimiliano Assante

12:35 PM Task #2698 (Closed): enhance dev2.d4science.org VM performance

tommaso switched the disk to a quicker unit and performances have increased (a bit). I consider this sufficient for t... Massimiliano Assante

12:16 PM Upgrade #1956 (Invalid): gCubeApps VO upgrade to gCube 3.10.0

Massimiliano Assante wrote:
> @roberto.cirillo@isti.cnr.it i think this ticket can be closed?
Yes, of course. Thi... Roberto Cirillo

11:46 AM Upgrade #1956: gCubeApps VO upgrade to gCube 3.10.0

@roberto.cirillo@isti.cnr.it i think this ticket can be closed? Massimiliano Assante

Mar 30, 2016

02:54 PM Task #2192 (Closed): Gcc and boost installation

Andrea Dell'Amico

02:53 PM Task #2192: Gcc and boost installation

Yes you can, thank you. Gianpaolo Coro

02:52 PM Task #2192: Gcc and boost installation

May I close it? A new one should be opened with the installation instructions into the definitive place.
Andrea Dell'Amico

02:50 PM Support #2134 (Closed): Enhancing Statistical Manager performance

An agreement was reached, see https://support.d4science.org/issues/3070
Andrea Dell'Amico

11:03 AM Support #2134: Enhancing Statistical Manager performance

It's ok for me Roberto Cirillo

02:49 PM Task #3070 (Closed): Provide a way of starting and stopping a list of VMs by some users

A web page with a fixed - and checkable - list of hosts should be sufficient.
Associated actions (via a simple cgi... Andrea Dell'Amico

Mar 26, 2016

10:47 PM Task #2705 (In Progress): Create new VM for production Infrastructure Gateway (Liferay 6.2)

On db-gateway.d4science.org postgresql 9.4 is running. There's a db defined named `infra_liferay`. The db username is... Andrea Dell'Amico

Mar 25, 2016

06:43 PM Task #3064: Investigate the installation of an identity manager

A possibile candidate: https://evolveum.com/midpoint/ Andrea Dell'Amico

06:42 PM Task #3064 (Closed): Investigate the installation of an identity manager

It could be a way to eliminate manage.research-infrastructures.eu and integrate the ldap data from the portals with r... Andrea Dell'Amico

04:41 PM Support #2134: Enhancing Statistical Manager performance

Today we have had a short meeting and it seems that a self service tool can be built to allow people turn machines on... Gianpaolo Coro

Mar 24, 2016

03:41 PM Support #2134: Enhancing Statistical Manager performance

I believe that the static allocation of resources to services is something is going to constraint us too much. Hopefu... Pasquale Pagano

01:51 PM Support #2134: Enhancing Statistical Manager performance

Gianpaolo Coro wrote:
> You're right, this is not the place to talk about the mandates of the projects we are involv... Andrea Dell'Amico

01:38 PM Support #2134: Enhancing Statistical Manager performance

You're right, this is not the place to talk about the mandates of the projects we are involved in, you should have al... Gianpaolo Coro

01:18 PM Support #2134: Enhancing Statistical Manager performance

I lied. The last question is: why you expose the _mandatory_ requirement as argument only after days of discussion?
... Andrea Dell'Amico

01:13 PM Support #2134: Enhancing Statistical Manager performance

Gianpaolo Coro wrote:
> So we are stuck. Our platforms has been involved in projects that require embedding software... Andrea Dell'Amico

01:00 PM Support #2134: Enhancing Statistical Manager performance

So we are stuck. Our platforms has been involved in projects that require embedding software produced by other people... Gianpaolo Coro

12:49 PM Support #2134: Enhancing Statistical Manager performance

Gianpaolo Coro wrote:
> On the dataminer nodes (both dev and prod, see my comment above). Most of the jobs run in th... Andrea Dell'Amico

12:42 PM Support #2134: Enhancing Statistical Manager performance

On the dataminer nodes (both dev and prod, see my comment above). Most of the jobs run in the JDK heap thus this shou... Gianpaolo Coro

12:38 PM Support #2134: Enhancing Statistical Manager performance

On what? prodution dataminer nodes? devel dataminer nodes? and what about the JDK heap? Do the jobs run inside or out... Andrea Dell'Amico

12:30 PM Support #2134: Enhancing Statistical Manager performance

Let's start rising RAM to 16 GB Gianpaolo Coro

12:22 PM Support #2134: Enhancing Statistical Manager performance

Gianpaolo Coro wrote:
> 16 CPUs or cores should be sufficient if these were averagely free.
(16 * (2 dataminer no... Andrea Dell'Amico

02:20 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

All the Software is still to be installed. Tommaso Piccioli

02:18 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Let's start with two base machines:
infra-gateway.d4science.org Cores: 4, RAM: 5GB, disk: 16GB+100GB (/tmp)
db-g... Tommaso Piccioli

12:04 PM Task #2764 (Closed): OrientDB installation

Tommaso Piccioli

11:48 AM Task #2764: OrientDB installation

Lucio and Luca can access with ssh to the user orientdb and start the orientdb console,
from our networks you can a... Tommaso Piccioli

09:33 AM Task #2764 (In Progress): OrientDB installation

I can't login.
Actually I don't know how to configure it. Can you please provide the default configuration, we will ... Luca Frosini

10:37 AM Upgrade #2461 (Planned): D4Science Infrastructure Upgrade to gCube 3.10.1

Roberto Cirillo

Mar 23, 2016

11:09 PM Support #2134: Enhancing Statistical Manager performance

16 CPUs or cores should be sufficient if these were averagely free.
16 GB of RAM comes from the fact that one of the... Gianpaolo Coro

06:14 PM Support #2134: Enhancing Statistical Manager performance

Waiting for Tom for the operations.
But we really need some data, because your `top` output is completely useless.
... Andrea Dell'Amico

05:57 PM Support #2134: Enhancing Statistical Manager performance

Please, could you update me about this ticket? Is there any possibility to have more powerful machines for Dataminer ... Gianpaolo Coro

06:34 PM Upgrade #2462 (Completed): gCubeApps VO upgrade to gCube 3.10.1

Roberto Cirillo

06:33 PM Upgrade #2462 (In Progress): gCubeApps VO upgrade to gCube 3.10.1

Roberto Cirillo

06:31 PM Upgrade #2714 (Completed): D4Science Root VO upgrade to gCube 3.10.1

Roberto Cirillo

06:31 PM Upgrade #2714 (In Progress): D4Science Root VO upgrade to gCube 3.10.1

Roberto Cirillo

05:25 PM Task #536 (Feedback): Thredds: tomcat runs as root

The data-transfer service has been installed (under gcube user) and it is running on devsec scope for testing purpose... Roberto Cirillo

04:53 PM Task #536: Thredds: tomcat runs as root

The ghn will be installed with the user gcube, as it is on the dev machine thredds-d-d4s.d4science.org Tommaso Piccioli

04:06 PM Task #536: Thredds: tomcat runs as root

Could anyone add another user called gcube1 on thredds-p-d4s?
The gcube user is used by tomcat. I think it's better ... Roberto Cirillo

02:53 PM Task #536 (In Progress): Thredds: tomcat runs as root

It seems that the switch did not happen, the old machine is still active.
Andrea Dell'Amico

02:29 PM Task #2946 (Closed): Install ganglia and the local nagios checks on thredds-p-d4s.d4science.org

What cluster on Ganglia? Andrea Dell'Amico

02:25 PM Task #2764 (Closed): OrientDB installation

orientdb0-d-d4s.d4science.org
You can ssh login as user orientdb
configure orientdb server in /home/orientdb/orie... Tommaso Piccioli

Mar 22, 2016

07:25 PM Task #2921 (Closed): Please reduce log on couchdb

Thanks a lot Luca Frosini

07:12 PM Task #2921 (Feedback): Please reduce log on couchdb

The log level has been reset to `info` on `couchdb01-d-d4s.d4science.org`
Andrea Dell'Amico

07:11 PM Task #2921 (In Progress): Please reduce log on couchdb

The log level is already set as info by the playbook.
On the production servers, were the logs are at `info` level... Andrea Dell'Amico

06:48 PM Task #2921 (Closed): Please reduce log on couchdb

Couchdb log level is very low. This create a huge amount of log.
Please modify the ansible script to set couchdb log... Luca Frosini

07:00 PM Task #2922 (Closed): Dismiss couchdb instance available at http://accounting-d4s.d4science.org:5984/

Done. Andrea Dell'Amico

07:00 PM Task #2922 (In Progress): Dismiss couchdb instance available at http://accounting-d4s.d4science.org:5984/

Andrea Dell'Amico

06:51 PM Task #2922 (Closed): Dismiss couchdb instance available at http://accounting-d4s.d4science.org:5984/

Please do not confuse the couchdb instance with the haproxy instance on accounting-d4s.d4science.org deployed on port... Luca Frosini

06:00 PM Task #2892 (Feedback): Provide SoBigData colleagues with details for interfacing with LDAP

Andrea Dell'Amico

05:59 PM Task #2892 (In Progress): Provide SoBigData colleagues with details for interfacing with LDAP

Andrea Dell'Amico

02:58 PM Task #2892 (Closed): Provide SoBigData colleagues with details for interfacing with LDAP

Please provide @vittorio.romano@isti.cnr.it with details enabling to interface with the LDAP group associated with th... Leonardo Candela

04:59 PM Incident #2903 (Closed): Workspace Explorer: save dialog bug if a folder is selected

The fix has been released in dev environment and it will be released in production for gCube 3.10.1 update Francesco Mangiacrapa

04:37 PM Incident #2903 (Closed): Workspace Explorer: save dialog bug if a folder is selected

Workspace Explorer save dialog doesn't hide the popup and doesn't send the save event (to listeners) if a folder is s... Francesco Mangiacrapa

04:52 PM Task #2227 (Feedback): test replication tools for postgres

Andrea Dell'Amico

04:52 PM Task #2192 (Feedback): Gcc and boost installation

Andrea Dell'Amico

04:52 PM Task #2192 (In Progress): Gcc and boost installation

Andrea Dell'Amico

04:09 PM Task #2192: Gcc and boost installation

Gianpaolo Coro wrote:
> Just one note: to make quickrank compile correctly, the required compilator version is g++ 5... Andrea Dell'Amico

04:07 PM Task #2192: Gcc and boost installation

Just one note: to make quickrank compile correctly, the required compilator version is g++ 5 Gianpaolo Coro

Mar 21, 2016

06:37 PM Task #2784 (Closed): nagios, ganglia: add credentials to mongodb checks

Ganglia is working again too.
Andrea Dell'Amico

05:34 PM Task #2784: nagios, ganglia: add credentials to mongodb checks

For the future: the arbiter does not work against authentication in the same way the other mongo servers do. So I dis... Andrea Dell'Amico

05:17 PM Task #2784 (In Progress): nagios, ganglia: add credentials to mongodb checks

The nagios part is OK. Andrea Dell'Amico

04:21 PM Task #2784: nagios, ganglia: add credentials to mongodb checks

Andrea Dell'Amico wrote:
> I see that mongo1 (the arbiter?) now fails for every check.
Yes, mongo1 is the arbiter Roberto Cirillo

04:17 PM Task #2784: nagios, ganglia: add credentials to mongodb checks

I see that mongo1 (the arbiter?) now fails for every check.
Andrea Dell'Amico

04:16 PM Task #2784: nagios, ganglia: add credentials to mongodb checks

About nagios: the checked functionalities are:
~~~
if action == "connections":
elif action == "replicati... Andrea Dell'Amico

03:18 PM Task #2784: nagios, ganglia: add credentials to mongodb checks

Yes, of course. You can find the credentials on "mongo1-p-d4s.d4science.org" under /root/README. Roberto Cirillo

02:49 PM Task #2784: nagios, ganglia: add credentials to mongodb checks

How? Is there a user/password that nagios (and ganglia) can use to only access the data they need to read?
Andrea Dell'Amico

11:08 AM Task #2784 (Closed): nagios, ganglia: add credentials to mongodb checks

Since last friday, it's need to be authenticated for performing mongodb checks Roberto Cirillo

05:36 PM Task #2764: OrientDB installation

Install how-to can be found here
http://orientdb.com/docs/last/Unix-Service.html Luca Frosini

02:49 PM Task #2261: Better check for data.d4science.org availability

Andrea Dell'Amico wrote:
> @roberto.cirillo@isti.cnr.it @francesco.mangiacrapa@isti.cnr.it can you provide such URLs... Andrea Dell'Amico

02:25 PM Task #2774 (Feedback): Configure the mysql and postgresql local backups to not run if the remote backup is active

Both the postgresql and mysql backup cron jobs have been changed. Andrea Dell'Amico

02:06 PM Task #2774 (In Progress): Configure the mysql and postgresql local backups to not run if the remote backup is active

Andrea Dell'Amico

02:23 PM Task #2775: Configure backuppc to run the local DB backup scripts and write the backup status on the remote host

Andrea Dell'Amico wrote:
> BackupPC can be globally configured to run mysql/postgresql backups as a pre-step.
>
>... Andrea Dell'Amico

12:34 PM Support #2799 (Closed): Report Manager - Use of custom script on top of Report Manager

Hi, Is it possible (and if yes, how difficult it would be) to let the Report Manager execute a custom javascript?
Fo... Emmanuel Blondel

12:08 PM Task #2122 (Closed): enable external and internal authentication on mongodb

Roberto Cirillo

12:08 PM Task #2122 (In Progress): enable external and internal authentication on mongodb

Roberto Cirillo

12:07 PM Task #2123 (Closed): Edit the Storage-manager service endpoint

Roberto Cirillo

12:07 PM Task #2123 (In Progress): Edit the Storage-manager service endpoint

Roberto Cirillo

Mar 18, 2016

07:03 PM Task #2775 (Closed): Configure backuppc to run the local DB backup scripts and write the backup status on the remote host

BackupPC can be globally configured to run mysql/postgresql backups as a pre-step.
When the backuppc operations ar... Andrea Dell'Amico

06:59 PM Task #2774 (Closed): Configure the mysql and postgresql local backups to not run if the remote backup is active

The local scripts can check the existance and the state of a local file, eg `/var/log/backuppc.log` to check if a r... Andrea Dell'Amico

06:41 PM Task #1854 (Feedback): Tool for usage statistics on DataMiner

I've imported the logs of the last two days. The procedure will run every hour from now on.
The imported informati... Andrea Dell'Amico

01:57 PM Task #1854: Tool for usage statistics on DataMiner

I'm going to change the dataminer{1,2}-p-d4s.d4science.org nginx configuration to let the access logs be available fo... Andrea Dell'Amico

05:22 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

Gianpaolo Coro wrote:
> OccurrenceManagement was dismissed because it could be replaced by StatMan with only the Occ... Pasquale Pagano

03:40 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

Perhaps the easiest way is to create a VRE under gCubeApps where we put web applications for OpenBio. Currently, it i... Gianpaolo Coro

03:38 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

OccurrenceManagement was dismissed because it could be replaced by StatMan with only the Occurrence Management algori... Gianpaolo Coro

03:26 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

I support Lino's plan and suggest to rename the VRE with something like "EUBrazilOpenBio Species Lab". Leonardo Candela

03:10 PM Task #2756: Dismiss/Restore EuBrazilOpenBio infrastructure

I suggest to proceed as follow since it is too costly to keep it running on a separate installation.
- to host th... Pasquale Pagano

02:40 PM Task #2756 (Closed): Dismiss/Restore EuBrazilOpenBio infrastructure

The EuBrazilOpenBio portal has been just restarted, but I have noticed that all the applications are too old to work.... Gianpaolo Coro

04:20 PM Task #2660 (Closed): Workspace does not delete folders with subfolders

Valentina Marioli

04:19 PM Incident #2747 (Closed): Messages Portlet: message status is always unread, for every message

Bug fixed. The fix will be released in gCube 3.10.1. Valentina Marioli

02:54 PM Incident #2747 (In Progress): Messages Portlet: message status is always unread, for every message

I've checked the issue and I've found a problem during set status to read/unread to a message in the Home Library, th... Francesco Mangiacrapa

11:00 AM Incident #2747 (Closed): Messages Portlet: message status is always unread, for every message

Even when I read it, i refresh the page an the read get lost. Massimiliano Assante

03:35 PM Task #2764 (Closed): OrientDB installation

We need an installation of orientDB to perform some tests.
http://orientdb.com/orientdb/
For now you can instal... Lucio Lelii

01:35 PM Task #2754 (Closed): Activate backup for some analytics.d4science.org, cm.research-infrastructures.eu, code-repo.d4science.org

Of analytics.d4science.org we need a backup o /etc, /usr/share and /data
The others need a complete backup Andrea Dell'Amico

Mar 17, 2016

09:34 PM Task #1854: Tool for usage statistics on DataMiner

The basic configuration is ready. The server answers at http://analytics.d4science.org
It authenticates against lda... Andrea Dell'Amico

05:00 PM Task #2720: Explore rundeck as a better alternative to foreman

A possibile way to ansible integration: https://github.com/srknc/rundeck_ansible_sync Andrea Dell'Amico

04:59 PM Task #2720 (Closed): Explore rundeck as a better alternative to foreman

See http://rundeck.org
Andrea Dell'Amico

02:26 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Andrea Dell'Amico wrote:
> Massimiliano Assante wrote:
> > Using (a customised) liferay bundle as in the past.
>
... Massimiliano Assante

01:22 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Massimiliano Assante wrote:
> Using (a customised) liferay bundle as in the past.
OK

> > * Can we start from ... Andrea Dell'Amico

01:06 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Andrea Dell'Amico wrote:
> Questions:
>
> * Plans to deploy the application? Using the liferay bundle as in the p... Massimiliano Assante

12:20 PM Task #2705: Create new VM for production Infrastructure Gateway (Liferay 6.2)

Questions:
* Plans to deploy the application? Using the liferay bundle as in the past, or using the war(s) on an a... Andrea Dell'Amico

10:54 AM Task #2705 (Closed): Create new VM for production Infrastructure Gateway (Liferay 6.2)

The Liferay 6.2 instance deployed on this VM will serve and host all the current D4Science production Gateways (i-mar... Massimiliano Assante

12:39 PM Task #1285: Explore Zulip as a free alternative to Slack for team collaboration

Alternatives: mattermost http://www.mattermost.org/ and rocket.chat https://rocket.chat/
The first seems the more ma... Andrea Dell'Amico

12:27 PM Upgrade #2714 (Planned): D4Science Root VO upgrade to gCube 3.10.1

**Configuration**
* **(CNR) DONE** Edit storage-manager service endpoint: enable authentication (#2123)
**W... Roberto Cirillo

11:55 AM Upgrade #2714 (Completed): D4Science Root VO upgrade to gCube 3.10.1

This ticket keeps track of the D4Science Root VO upgrades to gCube 3.10.1.
Roberto Cirillo

Mar 16, 2016

06:52 PM Task #2698 (Closed): enhance dev2.d4science.org VM performance

The VM dev2.d4science.org is slow (pare un macinino), not sure if is the disk that is slow, the memory or whatsoever... Massimiliano Assante

03:53 PM Support #2690 (Closed): D4Science svn credentials for Maria Antonietta Di Girolamo

Now, I can access to the D4Science svn.
Thanks Maria. Maria Di Girolamo

03:05 PM Support #2690: D4Science svn credentials for Maria Antonietta Di Girolamo

@andrea.dellamico@isti.cnr.it or @tommaso.piccioli@isti.cnr.it could you enable Maria on SVN? Massimiliano Assante

03:01 PM Support #2690 (Closed): D4Science svn credentials for Maria Antonietta Di Girolamo

I'm not able to access in D4Science svn.Please , cold you check if the user can be access to the svn?
If no,please... Maria Di Girolamo

03:46 PM Task #1854: Tool for usage statistics on DataMiner

Hostname is going to be: analytics.d4science.org, IP 146.48.122.20 Andrea Dell'Amico

03:37 PM Task #1854 (In Progress): Tool for usage statistics on DataMiner

Andrea Dell'Amico

03:26 PM Support #2620 (Closed): Access to D4Science svn

Andrea Dell'Amico

03:06 PM Support #2620 (Resolved): Access to D4Science svn

Panagiota Koltsida

03:05 PM Task #2173 (Closed): Report the installation steps for Mono

Gianpaolo Coro

03:02 PM Task #2173 (Feedback): Report the installation steps for Mono

Paolo Fabriani

01:35 PM Task #2679 (Paused): Reinforce Redmine "forgot password" facility

Luca Frosini

01:35 PM Task #2679 (In Progress): Reinforce Redmine "forgot password" facility

I'm going to set the ticket to paused. I have added the task #1319 as blocking task. Luca Frosini

12:53 PM Task #2275 (Closed): Try foreman with the ansible plugin as an ansible console

An alternative is to ask me or @tommaso.piccioli@isti.cnr.it for an access to `shell.research-infrastructures.eu`, w... Andrea Dell'Amico

12:50 PM Task #2275: Try foreman with the ansible plugin as an ansible console

What's needed to enable the foreman callback on your own desktop:
1. Edit the ansible global configuration file. `... Andrea Dell'Amico

12:32 PM Task #2516: Provide RStudio in the e-Infrastructure VREs

I'm releasing the new RConnector in 3.10.1.
here you can find a small documentation : https://gcube.wiki.gcube-syste... Lucio Lelii

Mar 15, 2016

09:15 PM Task #2679 (Rejected): Reinforce Redmine "forgot password" facility

The reason why we don't have a direct link is because users could belong to different portals and we don't know which... Massimiliano Assante

07:41 PM Task #2679: Reinforce Redmine "forgot password" facility

The previous solution was made in collaboration between @andrea.dellamico@isti.cnr.it and @massimiliano.assante@isti.... Luca Frosini

07:34 PM Task #2679: Reinforce Redmine "forgot password" facility

The assignee is correct. If does not pertain to @luca.frosini@isti.cnr.it then he will reassign it to @andrea.dellami... Pasquale Pagano

07:18 PM Task #2679: Reinforce Redmine "forgot password" facility

The selection of the assignee is tentative. @pasquale.pagano@isti.cnr.it any suggestion on the "right" assignee? Leonardo Candela

06:44 PM Task #2679 (Closed): Reinforce Redmine "forgot password" facility

This ticket stems from #2666 and it is about the creation of a link/button to the procedure for password reset that i... Leonardo Candela

09:06 PM Task #2275: Try foreman with the ansible plugin as an ansible console

I configured authentication against ldap, so everyone can authenticate. After the first authentication I (or another ... Andrea Dell'Amico

09:03 PM Task #2275: Try foreman with the ansible plugin as an ansible console

Foreman is working in some way. An ansible plugin is needed, instructions will follow.
shell.research-infrastructure... Andrea Dell'Amico

08:43 PM Upgrade #2462: gCubeApps VO upgrade to gCube 3.10.1

can you update the ticket? I think other actions have been performed in the meanwhile. Pasquale Pagano

06:44 PM Support #2666 (Closed): Redmine: request to improve "Forgot Password" procedure

#2679 was created Leonardo Candela

06:16 PM Support #2666: Redmine: request to improve "Forgot Password" procedure

Leonardo Candela wrote:
> I'm confident that the request is "technically" possible/feasible, at the end of the story... Luca Frosini

06:03 PM Support #2666: Redmine: request to improve "Forgot Password" procedure

I'm confident that the request is "technically" possible/feasible, at the end of the story it is a matter of adding... Leonardo Candela

05:54 PM Support #2666 (Feedback): Redmine: request to improve "Forgot Password" procedure

I think that is technically possible.
To do it, we should allocate effort to patch Redmine templates and keep the pa... Luca Frosini

05:27 PM Support #2666 (Closed): Redmine: request to improve "Forgot Password" procedure

The current helper for users that forgot their password consists of this string only
"Please note: if you lost yo... Leonardo Candela

06:42 PM Task #2660 (Feedback): Workspace does not delete folders with subfolders

Valentina Marioli

06:42 PM Task #2660 (In Progress): Workspace does not delete folders with subfolders

In Workspace portlet you can already delete folders containing subfolders.
The problem is when folders containing g... Valentina Marioli

04:14 PM Task #2660: Workspace does not delete folders with subfolders

I'm going to assign this ticket to Valentina to check or enable the requested functionality in the Home Library Francesco Mangiacrapa

03:43 PM Task #2660 (Closed): Workspace does not delete folders with subfolders

The Workspace cannot delete folders containing subfolders. Is it possible to have this functionality enabled, since t... Gianpaolo Coro

05:15 PM Incident #2662 (Closed): Etics portal: login fails

Roberto Cirillo

05:15 PM Incident #2662: Etics portal: login fails

It works now Roberto Cirillo

05:12 PM Incident #2662 (In Progress): Etics portal: login fails

I restarted the service, please try now Gabriele Giammatteo

05:00 PM Incident #2662 (Closed): Etics portal: login fails

I'm trying to login in etics web portal but I get an error when I click on Configuration section:
~~~
ERROR
Navi... Roberto Cirillo

04:51 PM Task #2508 (Closed): No firewall on the cassandra hosts

Massimiliano Assante

04:32 PM Task #2508 (Feedback): No firewall on the cassandra hosts

Firewall rules deployed on the production cluster too.
Andrea Dell'Amico

03:56 PM Support #2620 (Feedback): Access to D4Science svn

Andrea Dell'Amico

03:55 PM Support #2620: Access to D4Science svn

User created and access to the D4Science SVN granted. It will be operative when @mnikolopoulos@cite.gr will complete ... Andrea Dell'Amico

03:45 PM Support #2620 (In Progress): Access to D4Science svn

Andrea Dell'Amico

10:42 AM Support #2620 (Closed): Access to D4Science svn

Can you give access to Michalis Nikolopoulos (mnikolopoulos@cite.gr) in D4Science svn?
He is working for CITE and he... Panagiota Koltsida

11:01 AM Task #2516: Provide RStudio in the e-Infrastructure VREs

I my opinion, the user would benefit from opening a new browser tab, because otherwise including RStudio in the porta... Gianpaolo Coro

10:48 AM Task #2516: Provide RStudio in the e-Infrastructure VREs

@gianpaolo.coro@isti.cnr.it It is unclear to me whether the requirement is to have RStudio embedded into an iFrame wi... Massimiliano Assante

Mar 14, 2016

06:39 PM Task #2516: Provide RStudio in the e-Infrastructure VREs

I have already changed the r-connector server and client. Now the tabular resource ID is not required and the usernam... Lucio Lelii

06:16 PM Task #2516: Provide RStudio in the e-Infrastructure VREs

I believe the part on connection of a user from D4Science to RStudio should be isolated from the TabMan specific beha... Pasquale Pagano

04:20 PM Task #2516: Provide RStudio in the e-Infrastructure VREs

The current RConnector implementation is TabMan specific. For now it requires a username and a TabularResourceId. Wha... Lucio Lelii

05:54 PM Task #2507: Move the transect app from dlib18.isti.cnr.it to data.d4science.org

dlib18.isti.cnr.it down after last backup Tommaso Piccioli

04:59 PM Task #2507 (Closed): Move the transect app from dlib18.isti.cnr.it to data.d4science.org

OK, I'm going to shutdown dlib18.isti.cnr.it.
Andrea Dell'Amico

04:30 PM Task #2507: Move the transect app from dlib18.isti.cnr.it to data.d4science.org

The new ServiceEndpoint has been correctly loaded by Geo portlet, so no portal restart is needed. The geo portlet che... Roberto Cirillo

03:43 PM Task #2507: Move the transect app from dlib18.isti.cnr.it to data.d4science.org

I've moved the Transect webapp to data.d4science.org and update the releated serviceEndpoint. At next portal restart,... Roberto Cirillo

01:07 PM Task #2507: Move the transect app from dlib18.isti.cnr.it to data.d4science.org

Ah OK, perfect.
Andrea Dell'Amico

12:55 PM Task #2507: Move the transect app from dlib18.isti.cnr.it to data.d4science.org

The Transect webapp is used only by Geo portlet (hosted on iMarine portal). I'm going to copy the transect webapp on ... Roberto Cirillo

12:30 PM Task #2507: Move the transect app from dlib18.isti.cnr.it to data.d4science.org

So we can install the transect app on data.d4science.org too, and change the dlib18.isti.cnr.it hostname to become an... Andrea Dell'Amico

11:52 AM Task #2507 (In Progress): Move the transect app from dlib18.isti.cnr.it to data.d4science.org

I've tried to move the transect webapp on "data-d.d4science.org" host,as you suggested, for testing purpose. It works... Roberto Cirillo

05:41 PM Task #2175: Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org

rstudio.d.d4science.research-infrastructures.eu down after last backup. Tommaso Piccioli

05:26 PM Task #2175 (In Progress): Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org

I am going to dismiss rstudio.d.d4science.research-infrastructures.eu now,
there is already a rstudio-dev.d4science.... Tommaso Piccioli

05:41 PM Task #2509 (Closed): Add Ganglia monitoring to the cassandra cluster

Done.
No special cassandra support, because some reconfiguration is needed.
Andrea Dell'Amico

04:57 PM Task #2509 (In Progress): Add Ganglia monitoring to the cassandra cluster

The ganglia basic configuration is ready to be deployed. Andrea Dell'Amico

04:45 PM Task #2583 (Closed): The cassandra services are not enabled at boot time

cassandra enabled at boot on all the servers.
Andrea Dell'Amico

04:40 PM Task #2583 (Closed): The cassandra services are not enabled at boot time

Both in dev and in production.
Andrea Dell'Amico

04:34 PM Task #2508: No firewall on the cassandra hosts

cassandra2-d has been restarted.
Let me know if it's all OK on the cluster.
Andrea Dell'Amico

04:11 PM Task #2508: No firewall on the cassandra hosts

The firewall rules are active on cassandra1-d-d4s. cassandra2-d-d4s needs a reboot to activate the firewall, because ... Andrea Dell'Amico

03:52 PM Task #2508: No firewall on the cassandra hosts

Massimiliano Assante wrote:
> the d4science gateways and the Elastic Search Cluster (Not yet in production, but exis... Andrea Dell'Amico

03:43 PM Task #2508: No firewall on the cassandra hosts

and my IP and Constantino's Massimiliano Assante

03:43 PM Task #2508: No firewall on the cassandra hosts

the d4science gateways and the Elastic Search Cluster (Not yet in production, but existing in dev) and a Smart Execut... Massimiliano Assante

03:36 PM Task #2508 (In Progress): No firewall on the cassandra hosts

Andrea Dell'Amico

03:35 PM Task #2508: No firewall on the cassandra hosts

The new rules wil permit traffic between the cluster hosts on the ports: 7000, 7001.
Port 9042 and 9160 will be open... Andrea Dell'Amico

04:30 PM Task #307 (Closed): New SSL certificates for manage.research-infrastructures.eu and issue.openaire.research-infrastructures.eu

Tommaso Piccioli

01:17 PM Task #184 (In Progress): Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions

These nodes (EUBrazilOpenBio production) upgraded:
node3.p.d4science.research-infrastructures.eu migrated to 14.04
... Tommaso Piccioli

11:28 AM Task #1743 (Closed): Create iMarine board / community mailing list

Done, new mailing list created and popolated. Tommaso Piccioli

10:58 AM Task #1919 (Closed): dismiss node1.p.cassandra.research-infrastructures.eu and node2.p.cassandra.research-infrastructures.eu

Tommaso Piccioli

10:57 AM Task #2547 (Closed): The backup service must run a post-script on the ldap servers

post-dump script running /usr/local/bin/ldap_logs_cleaner on
issue.research-infrastructures.eu
ldap-liferay.... Tommaso Piccioli

Mar 13, 2016

08:47 PM Task #2516: Provide RStudio in the e-Infrastructure VREs

I know nothing about this app, don't even know where we hosting it on our infrastructure and how we auth on it , can ... Massimiliano Assante