D4Science Infrastructure

Jan 19, 2016

08:36 PM Task #1127 (Feedback): Add cotrix.d4science.org to the nagios monitoring

Andrea Dell'Amico

08:36 PM Task #1127 (In Progress): Add cotrix.d4science.org to the nagios monitoring

Done.
Note that the ajp (8009) and 8080 ports are open to the world. They should be disabled if not used.
Andrea Dell'Amico

08:28 PM Task #1909 (Closed): Access to svn and gCube wiki

Andrea Dell'Amico

08:24 PM Support #1325 (Closed): rstudio.d4science.org: add nagios check

The check was in place already. Andrea Dell'Amico

08:22 PM Task #844: Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"

Roberto Cirillo wrote:

> ~~~
> http://statbase1.smartfish.d4science.org/statbase/StartPage.action?request_locale... Andrea Dell'Amico

08:01 PM Task #844 (Feedback): Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"

Andrea Dell'Amico

08:01 PM Task #844 (In Progress): Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"

Done.
Andrea Dell'Amico

08:07 PM Task #1958 (Feedback): thredds.d4science.org: add Nagios check on ghn

Andrea Dell'Amico

08:07 PM Task #1958 (In Progress): thredds.d4science.org: add Nagios check on ghn

Done.
Note that the server has the ajp port open to the world, and the bluethoot service running (?).
Andrea Dell'Amico

07:55 PM Task #150 (Feedback): Add nagios check for sp.d4science.org tomcat

I added the check.
The certificate expiration date is also checked.
Note that tomcat answers to the 8080 port wit... Andrea Dell'Amico

07:42 PM Task #149 (Feedback): Add nagios check for www.d4science.org and www.gcube-system.org websites

Done. The certificate expiration date is also checked.
Andrea Dell'Amico

07:41 PM Task #149 (In Progress): Add nagios check for www.d4science.org and www.gcube-system.org websites

Andrea Dell'Amico

07:23 PM Support #119 (In Progress): add new nagios check on bionym.d4science.org

Can you provide a URL to test that the application is working? A wsdl perhaps?
Andrea Dell'Amico

03:03 PM Task #206 (Closed): Automate the installation of wps.statistical.d4science.org

This ticket does not have sense anymore, since wps.statistical will be soon substituted by DataMiner.
I have sent a... Gianpaolo Coro

12:12 PM Task #1918: Create new Apache Cassandra cluster on production (3 VMs)

Tom we need to upgrade very soon. We need these machines Massimiliano Assante

12:03 PM Upgrade #1917 (Planned): D4Science Gateways 1st upgrade to gCube 3.10.0

Massimiliano Assante

10:43 AM Task #1628 (Closed): MongoDB-Storage: test new storage engine WiredTiger

Now we have all development nodes running with the new storage engine wiredTiger. All nodes has been upgraded to vers... Roberto Cirillo

Jan 18, 2016

09:16 PM Task #1855: Promote DataMiner for QGIS

This ticket is waiting for someone to answer in the QGIS developers community forum
~~~
http://comments.gmane.org... Gianpaolo Coro

02:58 PM Task #1838 (Closed): Smart-generic worker should download file by uri-resolver

This issue will be solved in #1959. The Smart Generic Worker has now the dependency from the storage-manager-http-han... Gianpaolo Coro

Jan 15, 2016

05:43 PM Task #1985 (Closed): services.d4science: iMarine is missing

https://services.d4science.org/web/guest/virtual-research-environments contains now also iMarine in the Supported Pro... Massimiliano Assante

05:35 PM Task #1985 (In Progress): services.d4science: iMarine is missing

Massimiliano Assante

Jan 14, 2016

07:18 PM Task #1985 (Closed): services.d4science: iMarine is missing

iMarine is not listed in this page https://services.d4science.org/web/guest/virtual-research-environments
It sh... Leonardo Candela

07:15 PM Task #1984 (Rejected): Reconsider the Experiencing page on the D4Science website

Website page https://www.d4science.org/experiencing lists **4 VREs only** (the public access ones). This message risk... Leonardo Candela

Jan 13, 2016

03:40 PM Task #1958 (Closed): thredds.d4science.org: add Nagios check on ghn

The ghn running on port 8080 hosted on
~~~
thredds.d4science.org
~~~
should be monitored by nagios. Now we h... Roberto Cirillo

02:33 PM Support #1721 (Closed): new VM for uri-resolver in dev

Fixed some of the rewrite rules, now they are much simpler. The only one that remains is
~~~
RewriteRule ^/uri-r... Andrea Dell'Amico

10:45 AM Upgrade #1956: gCubeApps VO upgrade to gCube 3.10.0

**Configuration**
* **(CNR) DONE** add following algorithms to the VO:
SEADATANET_INTERPOLATOR, GRID_CWP_T... Roberto Cirillo

10:40 AM Upgrade #1956 (Completed): gCubeApps VO upgrade to gCube 3.10.0

This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.10.0 for the gCubeApps Virtual Organisation Roberto Cirillo

Jan 12, 2016

07:00 PM Task #1909 (Feedback): Access to svn and gCube wiki

Andrea Dell'Amico

03:40 PM Task #1909 (In Progress): Access to svn and gCube wiki

svn and wiki access need a different user. I see that Gerasimos Farantatos already has one: https://manage.research-i... Andrea Dell'Amico

12:47 PM Task #1909: Access to svn and gCube wiki

Sandy is a new colleague from CITE and she will also register to the BlueBridgeProject VRE.
Can they use their exist... Panagiota Koltsida

06:58 PM Support #1721: new VM for uri-resolver in dev

I've added `data.gcube-system.org` as server alias into the apache virtualhost configuration.
Andrea Dell'Amico

06:51 PM Support #1721 (Feedback): new VM for uri-resolver in dev

data-d.d4science.org is now up and running.
Francesco has access as gcube user, Roberto has access as root and gcube... Andrea Dell'Amico

06:42 PM Support #1721: new VM for uri-resolver in dev

CNAME created on DNS zone: data.gcube-system.org -> data-d.d4science.org Tommaso Piccioli

04:58 PM Support #1721: new VM for uri-resolver in dev

The ansible playbook will install and configure:
* apache, with the rewrite rules
* Oracle JDK 7
* Tomcat runnin... Andrea Dell'Amico

04:57 PM Support #1721: new VM for uri-resolver in dev

The VM name is data-d.d4science.org, the needed aliases will be added later.
Andrea Dell'Amico

04:55 PM Support #1721: new VM for uri-resolver in dev

@andrea.dellamico@isti.cnr.it when the machine will be ready, please you should move the rewrite rules created here: ... Francesco Mangiacrapa

04:30 PM Support #1721 (In Progress): new VM for uri-resolver in dev

Tommaso Piccioli

04:56 PM Task #1897 (Closed): replace dev2.d4science.org with this VM

the new host dev2.d4science.org running with ubuntu 14.04, java7 and postgresql 9.4
Access to user life with ssh key Tommaso Piccioli

03:13 PM Upgrade #1917: D4Science Gateways 1st upgrade to gCube 3.10.0

# **Portals**
The portals should be upgraded using the new mavenized portal bundle 3-10-0
## **Portals to upgra... Massimiliano Assante

12:27 PM Task #1702 (Paused): Export LDAP groups to Redmine and populate them

The plan is ready, I'm pausing the ticket waiting for the first upgrade of gCube 3.10 #1911 in production (which will... Massimiliano Assante

12:25 PM Task #1702 (In Progress): Export LDAP groups to Redmine and populate them

Massimiliano Assante

11:45 AM Task #1283 (Closed): Thredds layers colors not visualised on GisViewer

Francesco Mangiacrapa

Jan 11, 2016

07:46 PM Task #1909: Access to svn and gCube wiki

Gerasimos is also a member of BlueBRIDGE, I'm fine with this.
Sandy is a newcomer. Shall she register to the B... Leonardo Candela

01:24 PM Task #1909 (Closed): Access to svn and gCube wiki

Can you give access to the svn and gCube wiki for 2 colleagues?
Their names are:
* Gerasimos Farantatos (register... Panagiota Koltsida

06:33 PM Support #1721: new VM for uri-resolver in dev

any update? Francesco Mangiacrapa

05:51 PM Upgrade #1917: D4Science Gateways 1st upgrade to gCube 3.10.0

due to changes in a related task Massimiliano Assante

05:06 PM Upgrade #1917 (Closed): D4Science Gateways 1st upgrade to gCube 3.10.0

Massimiliano Assante

05:43 PM Upgrade #1923 (Closed): preprod.d4science.org 2nd upgrade to gCube 3.10.0

Massimiliano Assante

05:33 PM Task #1921 (Closed): Copy production keyspace onto new cassandra production cluster

Massimiliano Assante

05:30 PM Task #1919 (Closed): dismiss node1.p.cassandra.research-infrastructures.eu and node2.p.cassandra.research-infrastructures.eu

When the upgrade to 3.10.0 will be completed these machines can be dismissed Massimiliano Assante

05:25 PM Task #1918 (Closed): Create new Apache Cassandra cluster on production (3 VMs)

We'd need 3 brand new VMs having Java7 and Apache Cassandra 2.1.11 (released on 2015-10-16), the same versions of the... Massimiliano Assante

05:11 PM Upgrade #1256 (Closed): Provide an upgrade script for upgrading GCore container

Roberto Cirillo

05:11 PM Upgrade #1256 (Completed): Provide an upgrade script for upgrading GCore container

Roberto Cirillo

05:11 PM Upgrade #1256 (In Progress): Provide an upgrade script for upgrading GCore container

Roberto Cirillo

05:10 PM Upgrade #1071 (Closed): gCubeApps VO upgrade to gCube 3.9.0

Roberto Cirillo

05:10 PM Upgrade #1071 (Completed): gCubeApps VO upgrade to gCube 3.9.0

Roberto Cirillo

05:10 PM Upgrade #1071 (In Progress): gCubeApps VO upgrade to gCube 3.9.0

Roberto Cirillo

05:10 PM Upgrade #1070 (Closed): FARM VO upgrade to gCube 3.9.0

Roberto Cirillo

05:10 PM Upgrade #1070 (Completed): FARM VO upgrade to gCube 3.9.0

Roberto Cirillo

05:10 PM Upgrade #1070 (In Progress): FARM VO upgrade to gCube 3.9.0

Roberto Cirillo

05:09 PM Upgrade #1072 (Closed): D4Science Root VO upgrade to gCube 3.9.0

Roberto Cirillo

05:09 PM Upgrade #1072 (Completed): D4Science Root VO upgrade to gCube 3.9.0

Roberto Cirillo

05:09 PM Upgrade #1072 (In Progress): D4Science Root VO upgrade to gCube 3.9.0

Roberto Cirillo

05:05 PM Upgrade #1916 (Closed): Ecosystem VO upgrade to gCube 3.10.0

Massimiliano Assante

05:03 PM Upgrade #1915 (Closed): D4Science Root VO upgrade to gCube 3.10.0

Massimiliano Assante

05:00 PM Upgrade #1913 (Closed): gCubeApps VO upgrade to gCube 3.10.0

Massimiliano Assante

04:59 PM Upgrade #1912 (Closed): FARM VO upgrade to gCube 3.10.0

This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.10.0 for the FARM Virtual Organisation Massimiliano Assante

04:56 PM Upgrade #1069 (Closed): D4Science Infrastructure Upgrade to gCube 3.9.0

Roberto Cirillo

04:56 PM Upgrade #1069 (Completed): D4Science Infrastructure Upgrade to gCube 3.9.0

Roberto Cirillo

04:50 PM Upgrade #1069 (In Progress): D4Science Infrastructure Upgrade to gCube 3.9.0

Massimiliano Assante

04:50 PM Upgrade #1069 (Planned): D4Science Infrastructure Upgrade to gCube 3.9.0

Massimiliano Assante

04:52 PM Upgrade #1911 (Closed): D4Science Infrastructure Upgrade to gCube 3.10.0

This ticket keeps track of the D4Science infrastructure upgrades to gCube 3.10.0. Massimiliano Assante

04:49 PM Upgrade #1073 (Closed): Ecosystem VO upgrade to gCube 3.9.0

Massimiliano Assante

02:13 PM Task #1207 (Closed): Configure new Apache Cassandra dev version on cassandra1-d-d4s.d4science.org

Massimiliano Assante

11:48 AM Support #1837 (Closed): Add SmartGenericWorkers to the VREs

Roberto Cirillo

Jan 08, 2016

07:42 PM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

the interval from the last action on the ticket is acceptable. Pasquale Pagano

07:38 PM Task #449: New root VO creation for pre production

Root VO has been re-deployed and seems to be working fine. The previusly released servicemap is still valid. Liferay ... Daniele Pavia

07:03 PM Task #1702: Export LDAP groups to Redmine and populate them

Massimiliano Assante wrote:
> My LDAP script reflects the VREs into LDAP Groups, unless we create a VRE for redmine ... Andrea Dell'Amico

05:53 PM Task #1702: Export LDAP groups to Redmine and populate them

My LDAP script reflects the VREs into LDAP Groups, unless we create a VRE for redmine admins is not possible to do it... Massimiliano Assante

05:30 PM Task #1702: Export LDAP groups to Redmine and populate them

Andrea Dell'Amico wrote:
> Massimiliano Assante wrote:
> > I'm not sure that removing that current group is the bes... Luca Frosini

05:13 PM Task #1702: Export LDAP groups to Redmine and populate them

Massimiliano Assante wrote:
> I'm not sure that removing that current group is the best solution, perhaps we could r... Andrea Dell'Amico

03:54 PM Task #1702: Export LDAP groups to Redmine and populate them

I'm not sure that removing that current group is the best solution, perhaps we could remove the ones of partner organ... Massimiliano Assante

Jan 07, 2016

07:34 PM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

The only available option is the interval from the last action on the ticket (any action, the ticket opening coun... Andrea Dell'Amico

07:16 PM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

Pasquale Pagano wrote:
> @massimiliano.assante@isti.cnr.it please provide your feedback here.
>
> IMHO the remind... Massimiliano Assante

06:50 PM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

@massimiliano.assante@isti.cnr.it please provide your feedback here.
IMHO the reminder should notify a user if
- ... Pasquale Pagano

12:46 PM Task #1897 (Closed): replace dev2.d4science.org with this VM

Ubuntu 14.04 + java7 + Postgres 9
user: life Massimiliano Assante

12:17 PM Task #1283: Thredds layers colors not visualised on GisViewer

GeoeExplorer/GisViewer on dev environment (https://dev.d4science.org/group/devvre/geoexplorer) have been updated in o... Francesco Mangiacrapa

11:57 AM Incident #1893 (Closed): Workspace not working on dev infra

Workspace on dev infrastructure is now working. Valentina Marioli

11:53 AM Task #1855 (Paused): Promote DataMiner for QGIS

Gianpaolo Coro

11:53 AM Task #1855 (In Progress): Promote DataMiner for QGIS

Gianpaolo Coro

11:38 AM Task #1838 (Paused): Smart-generic worker should download file by uri-resolver

Gianpaolo Coro

11:38 AM Task #1838 (In Progress): Smart-generic worker should download file by uri-resolver

Gianpaolo Coro

11:36 AM Task #1205 (Closed): Assess RShiny and its usage within D4Science

This issue will be managed in the context of ticket #1825 Gianpaolo Coro

11:31 AM Task #1015 (Paused): Add GIS layers from Slovenia to EGIP catalogue

Gianpaolo Coro

Jan 05, 2016

04:27 PM Task #1283: Thredds layers colors not visualised on GisViewer

In order to manage and discriminate correctly styles and palettes for Geoserver and Thredds layers, I created a proce... Francesco Mangiacrapa

12:19 PM Incident #1893: Workspace not working on dev infra

I would need access to the tomcat hosting the jackrabbit instance at node11.d.d4science.research-infrastructures.eu, ... Massimiliano Assante

11:56 AM Incident #1893 (Closed): Workspace not working on dev infra

see exception below
~~~
2016-01-05 10:49:33,470 INFO repository.JCRRepository [TP-Processor5,init:309] %[PORTAL]... Massimiliano Assante

11:52 AM Upgrade #1074 (Closed): D4Science Gateways upgrade to gCube 3.9.0

Massimiliano Assante

Jan 04, 2016

12:46 PM Incident #1874 (Closed): Redmine automatic update reminders spamming

Andrea Dell'Amico

12:46 PM Incident #1874 (In Progress): Redmine automatic update reminders spamming

I just disabled the cron job. Use #1417 to converge to an acceptable behaviour, then let me know when to activate the... Andrea Dell'Amico

10:50 AM Incident #1874 (Closed): Redmine automatic update reminders spamming

Starting from January Second Redmine started to send automatic update reminders on every ticket not closed (i think)... Massimiliano Assante

Dec 28, 2015

05:18 PM Task #1702: Export LDAP groups to Redmine and populate them

Sounds good.
In my opinion the manually created group can be removed. They was useful when the procedure was manual,... Luca Frosini

Dec 23, 2015

05:47 PM Task #1702: Export LDAP groups to Redmine and populate them

Last, it could be useful to have a LDAP group called something like `redmineAdmins` and assign it to all the people t... Andrea Dell'Amico

05:44 PM Task #1702 (Feedback): Export LDAP groups to Redmine and populate them

I'm attaching a couple of screenshots of the results: the new groups list and the groups properties of @luca.frosini@... Andrea Dell'Amico

05:36 PM Task #1702 (In Progress): Export LDAP groups to Redmine and populate them

I made it work.
The needed steps are:
* Change the cron job's sync action from `sync_users` to `sync_all`
*... Andrea Dell'Amico

03:26 PM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

:D Luca Frosini

03:14 PM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

The cron job is now active, it will run for the first time tomorrow at 5AM.
A not so welcome Christmas present, I su... Andrea Dell'Amico

11:14 AM Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working

I just configured the plugin. @pasquale.pagano@isti.cnr.it is the victim of receiving all the email in CC.
https://s... Luca Frosini

Dec 22, 2015

04:01 PM Task #1638 (Closed): upgrade cluster mongodb to version 3.0

Roberto Cirillo

04:01 PM Task #1638 (In Progress): upgrade cluster mongodb to version 3.0

Now we have:
mongo1 and mongo3 with old storage engine: mmapv1;
mongo2, mongo4 with new storage engine: wiredTige... Roberto Cirillo

Dec 21, 2015

07:23 PM Task #461 (In Progress): Nagios and ganglia monitoring for the backup servers

Ganglia monitoring have been added.
Andrea Dell'Amico

06:56 PM Task #1846 (Closed): Provide an ansible playbook for publishing the smart-executor services at VRE level

Andrea Dell'Amico

05:06 PM Task #1846: Provide an ansible playbook for publishing the smart-executor services at VRE level

I'm starting the upgrade of the node[43:78].d4science.org hosts.
Andrea Dell'Amico

06:56 PM Task #1501 (Closed): Reinstall the 'old' smartexecutors from the provisioning

Andrea Dell'Amico

05:05 PM Task #1501 (Feedback): Reinstall the 'old' smartexecutors from the provisioning

All the listed nodes are up to date and the configuration modified as per https://support.d4science.org/issues/1846
Andrea Dell'Amico

12:51 PM Task #1501 (In Progress): Reinstall the 'old' smartexecutors from the provisioning

I'm starting the servers cleanup. The nodes will be unavailable for a couple of hours.
Andrea Dell'Amico

06:18 PM Support #1557: Multi-core Windows OS machine required for experiments

Works perfectly. Gianpaolo Coro

06:14 PM Support #1557 (Closed): Multi-core Windows OS machine required for experiments

The VM was moved by @tommaso.piccioli@isti.cnr.it on dlib28x.dom0.research-infrastructures.eu.
Andrea Dell'Amico

06:15 PM Task #460 (Closed): Upgrade the old backup server

The _old_ backup server is now running debian 8, thanks to @tommaso.piccioli@isti.cnr.it Andrea Dell'Amico

04:56 PM Task #1343 (Closed): Permit connections to the mongodb servers from the EGI cloud networks

The IN2P3-IRES (FR) cloud provider network: 134.158.0.0/16 Andrea Dell'Amico

02:28 PM Task #449: New root VO creation for pre production

The deployment of a newly created infrastructure requires a proper configuration and a defined order in the starting ... Pasquale Pagano

11:30 AM Task #1852 (Closed): Preparation of PreProduction Gateway for portlet functional testing

Massimiliano Assante