D4Science Infrastructure

Sep 08, 2015

07:01 PM Support #573 (Closed): Migrate support-social.isti.cnr.it on ISTI dom0

support-social.isti.cnr.it now is running on srv1-isti.isti.cnr.it xen dom0, svn data has been deleted on this server... Tommaso Piccioli

06:51 PM Support #573 (Closed): Migrate support-social.isti.cnr.it on ISTI dom0

Move support-social.isti.cnr.it service (all the host server) to srv1-isti.isti.cnr.it xen dom0 Tommaso Piccioli

06:45 PM Support #353: Uri resolver: URL_REWRITE for data.d4science.org

Any news?
Andrea Dell'Amico

06:09 PM Task #572: Request for new FARM VRE, name WECAFC-FIRMS

I see the logo proposed having a black background, we would need the logo to have either a white or a transparent bac... Massimiliano Assante

06:06 PM Task #572 (Closed): Request for new FARM VRE, name WECAFC-FIRMS

In the context of the “WECAFC project 2015-2016 - Strengthening national data collection and regional data sharing th... Massimiliano Assante

05:13 PM Support #571 (Closed): VREs and VOs user statistics

In view of the BlueBRIDGE kickoff, I and Roberto agreed that would probably be useful to show some statistics about V... Gabriele Giammatteo

03:36 PM Task #569 (Closed): Create Redirections from old ticketing instance to new Redmine installation

Now that task #172 is closed we should think about creating some permanent redirections (Permanently moved) if possib... Luca Frosini

03:24 PM Task #172 (Closed): Shut down the old d4science Trac instance

Seems that the ticket can be closed. We will open a new one to shut down an instance if we will find it. Luca Frosini

03:15 PM Task #172 (Feedback): Shut down the old d4science Trac instance

Andrea Dell'Amico

03:08 PM Task #172: Shut down the old d4science Trac instance

Massimiliano Assante wrote:
> https://issue.imarine.research-infrastructures.eu/ can be turned off
Done. Andrea Dell'Amico

02:45 PM Task #172: Shut down the old d4science Trac instance

https://issue.imarine.research-infrastructures.eu/ can be turned off Massimiliano Assante

11:54 AM Task #515: Investigate Redmine Plugin For Reports

Gianpaolo Coro wrote:
> The software requires direct connection to the Redmine MySQL database.
> @andrea.dellamico ... Andrea Dell'Amico

10:53 AM Task #515: Investigate Redmine Plugin For Reports

The software requires direct connection to the Redmine MySQL database.
@andrea.dellamico could you please share thes... Gianpaolo Coro

10:28 AM Task #515 (Paused): Investigate Redmine Plugin For Reports

Luca Frosini

10:28 AM Task #515: Investigate Redmine Plugin For Reports

The available plugins produce report in terms of open, in progress, closed tickets, providing statistics regarding th... Luca Frosini

10:17 AM Task #515 (In Progress): Investigate Redmine Plugin For Reports

Luca Frosini

11:02 AM Task #564: clean mongodb cluster on dev environment

The new secondary member (mongo2-d-d4s.d4science.org) had completed the full resync to the primary member (node41.d.d... Roberto Cirillo

11:02 AM Task #564 (Closed): clean mongodb cluster on dev environment

The clean is done running a full resync on secondaries member one at a time,and after that, step-down the primary and... Roberto Cirillo

Sep 07, 2015

07:41 PM Support #547 (Feedback): message-broker: increase "open file limit"

Andrea Dell'Amico

12:36 PM Support #547 (In Progress): message-broker: increase "open file limit"

I doubled the soft limit and increased the hard limit to 54000. From /etc/security/limits.conf:
~~~
* soft ... Andrea Dell'Amico

10:43 AM Support #547 (Closed): message-broker: increase "open file limit"

I've found a lot of exception like this:
~~~
2015-09-05 17:55:38,473 | ERROR | Could not accept connection : java.n... Roberto Cirillo

04:10 PM Support #511: Publishing raster data via StatMan

An algorithm has been implemented that allows publishing raster data on the geospatial network of D4Science.
The a... Gianpaolo Coro

01:03 PM Support #511: Publishing raster data via StatMan

The blocking issue has been solved, now it is possible to upload files on thredds and produce layers through GeoNetwo... Gianpaolo Coro

11:17 AM Support #511: Publishing raster data via StatMan

This issue is now blocked by ticket #549 Gianpaolo Coro

12:27 PM Task #488 (In Progress): Increment the message broker heap space

I added the following line to `/etc/default/activemq`:
ACTIVEMQ_OPTS_MEMORY=“-Xms2500m -Xmx2500m”
The service n... Andrea Dell'Amico

11:13 AM Task #501 (Closed): Put some virtuoso directories under backup

All file system under backup except /data Tommaso Piccioli

10:57 AM Task #548 (Closed): Log Rotation With Mongo

mongodb single log file can grow without a limit
(there is a 2.7G mongo_log.txt on node41.d.d4science)
We could ... Tommaso Piccioli

Sep 04, 2015

06:32 PM Support #511: Publishing raster data via StatMan

After investigating with Roberto, we found the issue was maily due to a transformation of smp URIs made by the class:... Gianpaolo Coro

01:08 PM Task #536: Thredds: tomcat runs as root

It's OK to me. Gianpaolo Coro

01:01 PM Task #536: Thredds: tomcat runs as root

Gianpaolo Coro wrote:
> Thredds is an old service installation that needs larger file system capacity with respect t... Andrea Dell'Amico

12:57 PM Task #536: Thredds: tomcat runs as root

Thredds is an old service installation that needs larger file system capacity with respect to other services. It need... Gianpaolo Coro

12:56 PM Task #536: Thredds: tomcat runs as root

Andrea Dell'Amico wrote:
> Is it possibile to create one and perform some basic tests on it?
I guess it is possib... Roberto Cirillo

12:52 PM Task #536: Thredds: tomcat runs as root

Is it possibile to create one and perform some basic tests on it?
Andrea Dell'Amico

12:51 PM Task #536: Thredds: tomcat runs as root

Andrea Dell'Amico wrote:
> As usual, I'd prefer to automate all the VM configuration. Is it possible? Is there a dev... Roberto Cirillo

12:44 PM Task #536: Thredds: tomcat runs as root

As usual, I'd prefer to automate all the VM configuration. Is it possible? Is there a devel instance where we can tes... Andrea Dell'Amico

12:33 PM Task #536 (Closed): Thredds: tomcat runs as root

The tomcat on "thredds.d4science.org" has been installed under the user tomcat but it runs as root. Now it is configu... Roberto Cirillo

12:17 PM Support #510 (Feedback): Data Transfer on the THREDDS instance

The ghn has been installed with the Data-Transfer service under the gcube user, it runs under /gcube/devsec scope. Th... Roberto Cirillo

10:54 AM Support #510 (In Progress): Data Transfer on the THREDDS instance

Roberto Cirillo

Sep 03, 2015

08:04 PM Support #511: Publishing raster data via StatMan

Gianpaolo Coro wrote:
> A publication process core for GIS raster data has been implemented, but still requires data... Pasquale Pagano

05:54 PM Support #511: Publishing raster data via StatMan

A publication process core for GIS raster data has been implemented, but still requires data transfer installation to... Gianpaolo Coro

06:17 PM Task #530: add storage manager service endpoint to new VREs at creation time

This task was already opened (issue #240). Lucio Lelii

11:56 AM Task #530 (Closed): add storage manager service endpoint to new VREs at creation time

Pasquale Pagano

06:16 PM Incident #401 (Resolved): Tabular Data Manager Portlet allows to Share Tabular Data Resources with the whole set of portal users

The fix seems work fine Francesco Mangiacrapa

12:20 PM Task #172: Shut down the old d4science Trac instance

Giuseppe Lipari wrote:
> Redbox Trac instance https://issue.redbox.research-infrastructures.eu/ can be turn off
D... Andrea Dell'Amico

11:43 AM Task #172: Shut down the old d4science Trac instance

Redbox Trac instance https://issue.redbox.research-infrastructures.eu/ can be turn off Giuseppe Lipari

10:55 AM Task #172: Shut down the old d4science Trac instance

@massimiliano.assante can we turn off iMarine Trac instance available here https://issue.imarine.research-infrastruct... Luca Frosini

10:19 AM Task #172: Shut down the old d4science Trac instance

Luca Frosini wrote:
> I'm lost. What is still to be done?
I didn't have any news about the redbox and imarine Tra... Andrea Dell'Amico

09:54 AM Task #172: Shut down the old d4science Trac instance

I'm lost. What is still to be done? Luca Frosini

11:47 AM Task #526 (Closed): add storage manager service endpoint to new BlueBridge VREs

Pasquale Pagano

11:04 AM Task #526: add storage manager service endpoint to new BlueBridge VREs

It seems ok Massimiliano Assante

10:48 AM Task #526 (Feedback): add storage manager service endpoint to new BlueBridge VREs

Could you check if all works now, please? Roberto Cirillo

10:37 AM Task #526 (In Progress): add storage manager service endpoint to new BlueBridge VREs

I'm going to add these resources but I think, the owner of this task should be the VREManager or the VRE Designer. Roberto Cirillo

10:33 AM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

They'll be needed for the production cluster when couchdb 2 will be ready. Until then they can be shut down or even r... Andrea Dell'Amico

10:25 AM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

hosts couch{01:04}-d4s.d4science.org still needed? Tommaso Piccioli

09:50 AM Task #110 (Closed): Create 3 Virtual Machine for developement to host new noSQL Db cluster

Luca Frosini

09:48 AM Task #85 (Closed): Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Luca Frosini

09:47 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Thanks Luca Frosini

09:48 AM Task #88 (Closed): Migrate gCube and D4Science WIKI content on new installation

Luca Frosini

09:47 AM Task #84 (Closed): Create new virtual machines to host gCube and DScience WIKI

Luca Frosini

Sep 02, 2015

11:13 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Luca Frosini wrote:
> Can you please also change the configuration file to point to this logo
> https://wiki.d4sci... Andrea Dell'Amico

02:53 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Can you please also change the configuration file to point to this logo
https://wiki.d4science.org/images/4/4d/D4Sc... Luca Frosini

06:13 PM Task #527 (Closed): Remove wrongly created scopes for the following VREs

Roberto Cirillo

05:53 PM Task #527 (In Progress): Remove wrongly created scopes for the following VREs

Roberto Cirillo

05:21 PM Task #527: Remove wrongly created scopes for the following VREs

A wrong method to undeploy the VRE (removeVRE) is called from the VREDeployment portlet.
The method to use is undepl... Lucio Lelii

03:22 PM Task #527 (Closed): Remove wrongly created scopes for the following VREs

Unfortunately Lino created 3 VREs in gCubeApps with wrong name, they have been undeployed however it seems that for s... Massimiliano Assante

03:18 PM Task #526 (Closed): add storage manager service endpoint to new BlueBridge VREs

You can find the list here
https://i-marine.d4science.org/web/guest/virtual-research-environments
they're all d... Massimiliano Assante

Sep 01, 2015

04:13 PM Support #517 (Resolved): Integrate Redmine in BlueBridgeProject VRE

BlueBridgeProject Issue Tracker integrated https://i-marine.d4science.org/group/bluebridgeproject/issue-tracker Massimiliano Assante

04:09 PM Support #517 (In Progress): Integrate Redmine in BlueBridgeProject VRE

Massimiliano Assante

04:09 PM Support #517 (Closed): Integrate Redmine in BlueBridgeProject VRE

Integrate Redmine in BlueBridgeProject VRE Massimiliano Assante

03:26 PM Task #515 (Closed): Investigate Redmine Plugin For Reports

Luca Frosini

11:38 AM Support #511 (Closed): Publishing raster data via StatMan

A process to publish raster data via StatMan is required. This will publish maps on GeoExplorer via GeoNetwork and Th... Gianpaolo Coro

11:35 AM Support #510 (Closed): Data Transfer on the THREDDS instance

A map production system for raster files needs to be implemented, which will publish GeoTIFFs and NetCDF files on Geo... Gianpaolo Coro

Aug 31, 2015

06:15 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Done. It seems OK now.
Andrea Dell'Amico

05:55 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

I just uploaded a 150x150 png image. Can you please fix LocalSettings.php as indicated in the link you provided?
htt... Luca Frosini

05:34 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

I installed both the favicon.ico and the logo_squared.png files, but the logo seems too big and I don't find any medi... Andrea Dell'Amico

05:15 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

New gCube logo is available here:
https://goo.gl/cd26ky Luca Frosini

05:01 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

The logo is now in place. Andrea Dell'Amico

05:08 PM Task #457: A new backup server

nb-bosio and nb-nardi needs some specific configuration on the client (probably firewall exceptions)
The backup of t... Tommaso Piccioli

05:07 PM Task #457: A new backup server

Already added/moved to this backup server:
data.d4science.org
portal.eubrazilopenbio.d4science.org
newportal.i... Tommaso Piccioli

Aug 28, 2015

11:25 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

The logo is missing. I am checking the web site. As soon as the logo will be added and the check is complete we will ... Pasquale Pagano

10:57 AM Task #85 (Feedback): Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Pasquale Pagano wrote:
> Since Kostas reported
> "
> I do not know if there are any changes from previous backup t... Andrea Dell'Amico

Aug 27, 2015

07:57 PM Task #501 (Closed): Put some virtuoso directories under backup

The only place that needs backup is the /etc/virtuoso-opensource-7 directory Andrea Dell'Amico

Aug 26, 2015

04:36 PM Task #299: New VM to host a Virtuoso instance

By request of UBONN the default virtuoso configuration has been updated, see the attached file virtuoso.ini. The defa... Claudio Atzori

Aug 25, 2015

06:29 PM Task #493 (Closed): Duplicate GenericResources of type VRE in gCubeApps

In gCubeApps we have several duplicate for GenericResources of type VRE, this is probably due to the Resource Manager... Massimiliano Assante

Aug 24, 2015

06:57 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Since Kostas reported
"
I do not know if there are any changes from previous backup that I have uploaded to Andrea.... Pasquale Pagano

05:09 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

https://wiki.d4science.org is also up and running with the contents from the iMarine wiki.
I enabled the ldap auth... Andrea Dell'Amico

05:03 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Pasquale Pagano wrote:
> Can you report the date of the backup you have restored?
August, 4:
ls -l /root/downl... Andrea Dell'Amico

04:54 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Can you report the date of the backup you have restored? Pasquale Pagano

04:51 PM Task #449 (In Progress): New root VO creation for pre production

This is not a duplicate ticket, this ticket is meant to track the activity regarding the new Root VO Creation while t... Massimiliano Assante

04:14 PM Task #449 (Rejected): New root VO creation for pre production

Duplicated, see #451 Pasquale Pagano

Aug 23, 2015

12:43 PM Task #488 (Closed): Increment the message broker heap space

activemq expects 2.3 GB of usable memory but the reserved java heap space is set as the 2G default.
To effectively... Andrea Dell'Amico

Aug 13, 2015

04:02 PM Task #457: A new backup server

redmine.d4science.org moved to the new backup server Tommaso Piccioli

03:32 PM Task #457 (In Progress): A new backup server

Tommaso Piccioli

03:31 PM Task #457: A new backup server

To date these host's backups have been moved to the new backuppc server:
auth1.research-infrastructures.eu
auth2.... Tommaso Piccioli

03:45 PM Incident #482 (Closed): GARR-CERT-16H1208 Unrestricted elasticsearch server access on node13.p.d4science.research-infrastructures.eu

############################################################
Incident Number: GARR-CERT-16H1208 CLOSED
##########... Tommaso Piccioli

03:43 PM Task #470: Install the new hypervisor server

dlib28x installed with debian8 and xen 4.4.1 (xl toolstack)
We lost the xenmap funtionalities because the python x... Tommaso Piccioli

03:25 PM Task #459 (Closed): Install and configure backuppc

debian 8 backuppc 3.3 installed and configured on the new backup server.
I prefere to leave StrictHostKeyChecking ... Tommaso Piccioli

03:18 PM Task #458 (Closed): Reinstall dlibsan1 as the new backup server

Ex dlibsan1 reinstalled as new backup server:
dlib2backup.isti.cnr.it
It's using 6 disk with mirror, resulting ... Tommaso Piccioli

03:13 PM Task #462 (Closed): X.509 certificates for the two backup servers

Due to the nature of these servers, at the moment we are using self signed certificate.
Tommaso Piccioli

Aug 12, 2015

06:26 PM Task #487 (Closed): Nagios monitoring of the ganeti services

We need to monitor the ganeti cluster services, and the DRBD replica state.
Some links:
> http://docs.ganeti.or... Andrea Dell'Amico

06:22 PM Task #484 (Closed): Add new hypervisors to the ganeti cluster

Andrea Dell'Amico

06:22 PM Task #484 (In Progress): Add new hypervisors to the ganeti cluster

All the tasks are complete. Andrea Dell'Amico

06:18 PM Task #484 (Closed): Add new hypervisors to the ganeti cluster

dlib12x and dlib13x can be added to the ganeti cluster already
Andrea Dell'Amico

06:22 PM Task #486 (Closed): Provision the new machines and add them to the cluster

The two hosts are now part of the ganeti cluster Andrea Dell'Amico

06:21 PM Task #486 (In Progress): Provision the new machines and add them to the cluster

Andrea Dell'Amico

06:20 PM Task #486 (Closed): Provision the new machines and add them to the cluster

Modify the xen playbook accordingly.
Andrea Dell'Amico

06:21 PM Task #485 (Closed): Reinstall dlib12x and dlib13x

Andrea Dell'Amico

06:21 PM Task #485 (In Progress): Reinstall dlib12x and dlib13x

@tommaso.piccioli installed both of them.
Andrea Dell'Amico

06:19 PM Task #485 (Closed): Reinstall dlib12x and dlib13x

debian 7, the same version of the other cluster nodes. Andrea Dell'Amico

06:12 PM Task #483 (Rejected): Add iptables rules to the backup server

Install firewall rules on both servers.
Andrea Dell'Amico

04:58 PM Support #478 (Closed): Sprint Creation on Parthenos Issue Tracker

Andrea Dell'Amico

11:37 AM Incident #482 (In Progress): GARR-CERT-16H1208 Unrestricted elasticsearch server access on node13.p.d4science.research-infrastructures.eu

I see that it's an index service that runs on a tomcat instance listening on port 8080. The webapp includes the ela... Andrea Dell'Amico

11:32 AM Incident #482 (Closed): GARR-CERT-16H1208 Unrestricted elasticsearch server access on node13.p.d4science.research-infrastructures.eu

GARR-CERT reports that node13.p.d4science.research-infrastructures.eu has an elasticsearch instance main port open to... Andrea Dell'Amico