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From Jun 22, 2015 to Jul 21, 2015

Jul 21, 2015

08:58 PM Task #405 (Closed): Replace workspace-repository-dev.research-infrastructures.eu with ws-repo-test.d4science.org?
The old dev VM is very different to the production one.
So it could be replaced with the newer machine created to te...
Andrea Dell'Amico
08:55 PM Task #404 (In Progress): Configure JackRabbit with a reverse proxy over ssl
The web proxy is active.
It was not possible to close the tomcat http port because the portal servers need to talk w...
Andrea Dell'Amico
08:53 PM Task #404 (Closed): Configure JackRabbit with a reverse proxy over ssl
* An apache webserver configured as reverse proxy needs to be configured
* A valid x509 certificate for workspace-re...
Andrea Dell'Amico
08:19 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Massimiliano Assante wrote:
> Just found out the LDAP instance syncs with Redmine every 30 minutes, if this can't be...
Andrea Dell'Amico
08:12 PM Task #293 (Feedback): Make any Liferay user to access Redmine (through LDAP Credentials)
The authentication against the second ldap server is now working. There was a problem with the ACLs that is now fixed.
Andrea Dell'Amico
04:18 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
descramble users exported successfully Massimiliano Assante
03:37 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Just found out the LDAP instance syncs with Redmine every 30 minutes, if this can't be changed there's no point for t... Massimiliano Assante
03:37 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
sure, I will if not today, tomorrow Massimiliano Assante
03:15 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Will you then integrate this list of users with the ones registered to the other portals? Pasquale Pagano
03:09 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
350 production users (circa) were successfully exported to the new LDAP instance (350 is the number of users of servi... Massimiliano Assante
08:10 PM Support #397 (In Progress): Export Liferay Portal users to LDAP
One small quirk:
the main ldap server uses 'givenName' for the First name, 'cn:' for "first name last name', 'sn' fo...
Andrea Dell'Amico
06:52 PM Incident #402 (Closed): Messages does not work at all
The problem was due to a bug handling the home library items: gCubeItemDocument and WorkflowReport.
The bug has bee...
Valentina Marioli
06:46 PM Incident #402 (In Progress): Messages does not work at all
Valentina Marioli
04:04 PM Incident #402 (Closed): Messages does not work at all
https://services.d4science.org/group/data-e-infrastructure-gateway/messages an error is reported Massimiliano Assante
06:41 PM Incident #403 (Resolved): HomeLibrary Exception when a user register to any VRE
Massimiliano Assante
06:35 PM Incident #403 (In Progress): HomeLibrary Exception when a user register to any VRE
Massimiliano Assante
06:31 PM Incident #403: HomeLibrary Exception when a user register to any VRE
it is not related to HL Massimiliano Assante
06:10 PM Incident #403 (Closed): HomeLibrary Exception when a user register to any VRE
Path /Home/d4science.research-infrastructures.eu-gCubeApps-VesselActivitiesAnalyzer-Manager/Workspace/MySpecialFolder... Massimiliano Assante
04:02 PM Support #353 (In Progress): Uri resolver: URL_REWRITE for data.d4science.org
Andrea Dell'Amico
03:34 PM Incident #401: Tabular Data Manager Portlet allows to Share Tabular Data Resources with the whole set of portal users
wonder why this problem was not found before Massimiliano Assante
03:15 PM Incident #401 (Closed): Tabular Data Manager Portlet allows to Share Tabular Data Resources with the whole set of portal users
I can share Tabular Data Resources with any user of the portal regardless its membership to the VRE. This causes the ... Massimiliano Assante
02:20 PM Task #100: Increase ram Memory on IS-Collector services in production

News: dlib18.isti.cnr.it is monitor.d4science.research-infrastructures.eu. It cannot be dismissed, so I moved it to...
Andrea Dell'Amico
11:44 AM Task #100 (Closed): Increase ram Memory on IS-Collector services in production
dlib18.isti.cnr.it has been shut down. The disks are still there and the VM definition is under /etc/xen/disabled (on... Andrea Dell'Amico
12:39 PM Support #399: Etics build show status not found
gCube ... sounds interesting. I should google a bit about it :) Paolo Fabriani
11:51 AM Support #399: Etics build show status not found
You should replace Condor with gCube as HTC environment to deliver large amounts of computational power over a long p... Pasquale Pagano
09:59 AM Support #399 (In Progress): Etics build show status not found
We had a problem with condor (the master daemon crashed). It should be working now. Paolo Fabriani
08:53 AM Support #399 (Closed): Etics build show status not found
If I submit a remote build, I see in the submission tab, the status of the component set to "Not Found": https://etic... Roberto Cirillo

Jul 20, 2015

08:17 PM Task #297 (Closed): New ldap instance
Andrea Dell'Amico
08:17 PM Task #100: Increase ram Memory on IS-Collector services in production
* Shutdown dlib18.isti.cnr.it so that there's no need to move node1.p.d4science.research-infrastructures.eu to anothe... Andrea Dell'Amico
06:45 PM Incident #395 (Closed): HomeLibrary: VRE Folder creation fails during new VRE Deployment
Bug fixed. Valentina Marioli
11:58 AM Incident #395 (In Progress): HomeLibrary: VRE Folder creation fails during new VRE Deployment
Valentina Marioli
06:26 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
We are ready to export the users in this new LDAP instance, tomorrow (Tue 21st) Redmine should be plugged to this new... Massimiliano Assante
12:08 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
LR does not export, my feeling is that if the import is not enabled then the export will not work. I'm now going to t... Massimiliano Assante
06:16 PM Support #397 (Resolved): Export Liferay Portal users to LDAP
Massimiliano Assante
05:11 PM Support #397 (In Progress): Export Liferay Portal users to LDAP
We were able to programmatically export the users of dev.d4science.org to this new LDAP instance Massimiliano Assante
03:41 PM Support #397: Export Liferay Portal users to LDAP
if it finds an already existing user it will update the user password regardless Massimiliano Assante
03:20 PM Support #397: Export Liferay Portal users to LDAP
In the meantime we may decide the policy to adopt in case of user conflict. What should the script do if it finds tha... Massimiliano Assante
03:17 PM Support #397 (Paused): Export Liferay Portal users to LDAP
I was able to setup a script that does the Job, however I don't have permission to write to LDAP. Tommaso is working ... Massimiliano Assante
03:07 PM Support #397 (In Progress): Export Liferay Portal users to LDAP
Massimiliano Assante
03:06 PM Support #397 (Closed): Export Liferay Portal users to LDAP
The Liferay Portal users should be exported to the new LDAP instance Massimiliano Assante
12:23 PM Support #396 (Closed): D4Science Portals should be powered by D4Science and not by gCube
Massimiliano Assante

Jul 17, 2015

05:15 PM Incident #394 (Closed): 2918 Generic Resource of type ResourceRegistryModel in pre production environment
Roberto Cirillo
04:10 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
restarted, you can close the issue Massimiliano Assante
04:05 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
All not needed resources have been deleted. You can restart portal now. John Gerbesiotis
03:53 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
Hi Yannis, I can see resources with the same name but with different ids. Lucio Lelii
03:40 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
Sorry for the delay Massi, but we were trying to figure out why all those resources were created. As I can see many r... John Gerbesiotis
03:29 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
Sorry Yannis,
we'd need this as soon as possible, any plan to be able to do it by today? If not we would have to del...
Massimiliano Assante
12:54 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
Thanks I'll restart the pre-production portal as soon as i get your reply on the clean up is done. Massimiliano Assante
12:46 PM Incident #394: 2918 Generic Resource of type ResourceRegistryModel in pre production environment
You are right, there are many old resource that probably have not been cleaned for a long time.
On the other hand,...
John Gerbesiotis
12:13 PM Incident #394 (Closed): 2918 Generic Resource of type ResourceRegistryModel in pre production environment
There are 2918 Generic Resources of type ResourceRegistryModel.
This number of resources is very big for a single se...
Roberto Cirillo
04:59 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Tom fixed the issue, however the users do not seem to get exported from Liferay to LDAP. We're not sure when Liferay ... Massimiliano Assante
04:09 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Updated: we're having troubles mapping users into LDAP, Tom is trying to fix the issue Massimiliano Assante
02:14 PM Task #293 (In Progress): Make any Liferay user to access Redmine (through LDAP Credentials)
the ldap instance is ready, trying to export Liferay users now Massimiliano Assante
04:23 PM Incident #395 (Closed): HomeLibrary: VRE Folder creation fails during new VRE Deployment
However no exception are shown in the server's log. Everything's seems ok but the folder is not in the workspace for ... Massimiliano Assante
12:29 PM Incident #391: Recently Updated Files Portlet does not work due to exception in HL 2.0
it seems so Massimiliano Assante
12:22 PM Incident #391: Recently Updated Files Portlet does not work due to exception in HL 2.0
Can you please check if the bug has been fixed? Valentina Marioli
12:17 PM Incident #391 (In Progress): Recently Updated Files Portlet does not work due to exception in HL 2.0
Valentina Marioli
12:29 PM Incident #393 (Closed): Share Updates: users tagging does not work in Firefox
Massimiliano Assante
10:57 AM Incident #393 (Resolved): Share Updates: users tagging does not work in Firefox
Massimiliano Assante
10:31 AM Incident #393 (In Progress): Share Updates: users tagging does not work in Firefox
Massimiliano Assante
12:26 PM Incident #392 (Closed): VRE Folder, removing users from VRE cause VRE Folder name to change badly
Bug fixed, it was due to a bug deserializing xml file from xstream. Valentina Marioli
12:15 PM Incident #392 (In Progress): VRE Folder, removing users from VRE cause VRE Folder name to change badly
Valentina Marioli

Jul 16, 2015

06:53 PM Incident #393 (Closed): Share Updates: users tagging does not work in Firefox
Share Updates: users tagging does not work in Firefox Massimiliano Assante
06:31 PM Incident #392 (Closed): VRE Folder, removing users from VRE cause VRE Folder name to change badly
e.g.
Recently updated in <string>&lt;string&gt;&amp;lt;string&amp;gt;&amp;amp;lt;string&amp;amp;gt;&amp;amp;amp;lt;...
Massimiliano Assante
05:42 PM Incident #391 (Closed): Recently Updated Files Portlet does not work due to exception in HL 2.0
This is what I get in the server's log
eed.server.NewsServiceImpl - Returning 4 users for scope /d4science.resear...
Massimiliano Assante
04:59 PM Task #390: Deploy VRE-Modeler service on Ecosystem VO
Already asked for this last Monday. Massimiliano Assante
04:58 PM Task #390 (Closed): Deploy VRE-Modeler service on Ecosystem VO
In order to properly test the VRE Creation in pre production, especially with the part concerning HomeLibrary 2.0 We ... Massimiliano Assante

Jul 15, 2015

11:53 AM Support #372: Quality/Testing a.k.a. pre production Infrastructure request for creation
I'm not sure who has to prepare an estimate of the cost involved, but at least 4 machines dedicated to the root VO (*... Massimiliano Assante

Jul 14, 2015

03:58 PM Task #386 (In Progress): ssl certificate for ldap-liferay.d4science.org
SSL certificate requested to helpreti@isti.cnr.it Tommaso Piccioli
01:17 PM Task #386 (Closed): ssl certificate for ldap-liferay.d4science.org
A x.509 certificate is needed
Andrea Dell'Amico
03:10 PM Task #299 (Closed): New VM to host a Virtuoso instance
The VM is running virtuoso 7.2.
There's now a playbook that manages the virtuoso install and basic configuration.
Andrea Dell'Amico
01:07 PM Support #372: Quality/Testing a.k.a. pre production Infrastructure request for creation
I think, before start with the creation of a new infrastructure is better to discuss about it, prepare an estimate o... Roberto Cirillo
12:16 PM Support #372 (Feedback): Quality/Testing a.k.a. pre production Infrastructure request for creation
Rob, can we start this activity after the gCube 3.8.0 rollout? Massimiliano Assante
12:14 PM Support #372 (In Progress): Quality/Testing a.k.a. pre production Infrastructure request for creation
The trade-off is indeed to create a new infrastructure named /d4s, move the resources of Ecosystem into it, and reuse... Massimiliano Assante
10:04 AM Incident #376 (Closed): Chimaera "find" service endpoint is down
Emmanuel Blondel
10:03 AM Incident #376: Chimaera "find" service endpoint is down
Thanks Kostas, everything is up and running now.
Kostas Kakaletris wrote:
> There was a power issue that caused s...
Emmanuel Blondel
09:57 AM Incident #376 (Feedback): Chimaera "find" service endpoint is down
There was a power issue that caused systems restart and there was problem after that.
The system was rebooted and n...
Kostas Kakaletris
09:14 AM Incident #376 (In Progress): Chimaera "find" service endpoint is down
Roberto Cirillo

Jul 13, 2015

06:46 PM Task #297 (In Progress): New ldap instance
The VM is up and running.
We are setting che new configuration up.
Andrea Dell'Amico
05:52 PM Task #374 (In Progress): Clone of node76.p.d4science.research-infrastructures.eu
ws-repo-test.d4science.org up and running, complete clone of workspace-repository.d4science.org with system package u... Tommaso Piccioli
02:58 PM Task #374: Clone of node76.p.d4science.research-infrastructures.eu
new machine to be named ws-repo-test.d4science.org Massimiliano Assante
02:55 PM Task #374 (Closed): Clone of node76.p.d4science.research-infrastructures.eu
We would need to clone node76.p.d4science.research-infrastructures.eu as we need to test the new HL configuration to ... Massimiliano Assante
05:48 PM Task #373 (Closed): New VM for the Mincyt project
The VM has been configured.
Andrea Dell'Amico
01:31 PM Task #373 (In Progress): New VM for the Mincyt project
Andrea Dell'Amico
01:31 PM Task #373 (Closed): New VM for the Mincyt project
See https://issue.openaire.research-infrastructures.eu/issues/1424 for the details Andrea Dell'Amico
04:56 PM Incident #376 (Closed): Chimaera "find" service endpoint is down
The Chimaera "find" service endpoint is down (Internal Error of servlet):
http://dl051.madgik.di.uoa.gr:8080/smartfi...
Emmanuel Blondel
04:34 PM Incident #368: LifeRay instance supporting D4Science and gCube website enable to browse gCube content only
it was not a PEBCAK, Leo was not assigned to the users belonging to the D4Science Site Massimiliano Assante
03:49 PM Incident #368 (Closed): LifeRay instance supporting D4Science and gCube website enable to browse gCube content only
It is neither a bug or a misconfiguration, it's a PEBCAK :) Massimiliano Assante
03:46 PM Task #366 (Closed): Temporary suspension of gCubeApps/iSearch VRE
Massimiliano Assante
03:45 PM Task #366 (Rejected): Temporary suspension of gCubeApps/iSearch VRE
Search and results portlets have been upgraded to HL 2.0 and do build now, thanks for your cooperation. The temporar... Massimiliano Assante
03:22 PM Support #372: Quality/Testing a.k.a. pre production Infrastructure request for creation
To minimize the impact of a new infrastructure to install, maintain, and manage we need to be sure to configure it to... Pasquale Pagano
12:57 PM Support #372 (Closed): Quality/Testing a.k.a. pre production Infrastructure request for creation
So far we utilised a separate VO for pre production testing. However some applications run at Infrastructure level (e... Massimiliano Assante
11:53 AM Task #290 (Feedback): Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
I fixed html tags, spacing, logo size and other html and css properties. Tell me if you want to preserve this new lay... Luca Frosini

Jul 10, 2015

07:00 PM Task #290: Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
Communication expert should make a try to beautify the page. Leonardo Candela
05:58 PM Incident #368 (Closed): LifeRay instance supporting D4Science and gCube website enable to browse gCube content only
It seems that there is either a bug or a misconfiguration in the LR instance that prevents me to browse the "content"... Leonardo Candela
01:57 PM Task #366: Temporary suspension of gCubeApps/iSearch VRE
We are going to release these 2 portlets asap, so as to avoid the suspension of the iSearch VRE. Suspending a VRE aft... Panagiota Koltsida

Jul 09, 2015

06:37 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
due to changes in a related task Pasquale Pagano
06:35 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
We need to complete this activity since we have more than 40 people registered to Liferay that need to use redmine. W... Pasquale Pagano
06:04 PM Incident #303 (Closed): Create alias for support.d4science.org (support.d4science.research-infrastructures.eu)
sorry it was a temporary network problem, it works Massimiliano Assante
06:02 PM Incident #303: Create alias for support.d4science.org (support.d4science.research-infrastructures.eu)
the redirect does not work with https://support.d4science.research-infrastructures.eu Massimiliano Assante
05:06 PM Task #366 (Closed): Temporary suspension of gCubeApps/iSearch VRE
As the portlet related to the Discovery framework have not been portlet to HL 2.0 (In particular search and results p... Massimiliano Assante
03:03 PM Task #299: New VM to host a Virtuoso instance
The progress (or lack of) can be followed here: https://issue.openaire.research-infrastructures.eu/issues/1391 Andrea Dell'Amico

Jul 08, 2015

04:33 PM Task #362: Limit HTTP Method on accounting-d4s.d4science.org
No, I don't need it now. It is not urgent.
We discussed about to have only the PUT method accessible from everywhe...
Luca Frosini
04:09 PM Task #362: Limit HTTP Method on accounting-d4s.d4science.org
Do you need this now? It can be done putting an haproxy instance in front of couchdb, and that's the plan for the pro... Andrea Dell'Amico
12:31 PM Task #362 (Closed): Limit HTTP Method on accounting-d4s.d4science.org
Only HTTP PUT Method should be allowed on accounting-d4s.d4science.org:5984 for the whole internet.
All the other ...
Luca Frosini
04:30 PM Task #364 (Closed): Nagios: create a new hostgroup and assign all the CNR monitored hosts to it
We need a way to list all the monitored hosts that run inside our data center.
Andrea Dell'Amico

Jul 07, 2015

11:28 AM Task #359 (Closed): Register Descramble portal to Google Analytics
Massimiliano Assante
11:23 AM Task #359 (In Progress): Register Descramble portal to Google Analytics
Massimiliano Assante
11:23 AM Task #359 (Closed): Register Descramble portal to Google Analytics
The Descramble portal should be registered in the D4Science portal Google Analytics Massimiliano Assante
10:55 AM Support #358 (Closed): Release 3.8, build4 FAILS
Roberto Cirillo
10:28 AM Support #358 (Closed): Release 3.8, build4 FAILS
The following link give me an error 500:
http://eticsbuild2.research-infrastructures.eu:8080/BuildReport/home/AllB...
Roberto Cirillo

Jul 06, 2015

04:41 PM Task #281 (Closed): Move to the D4Science.org domain from the Research infrastructure domain
ssl is enabled for both ci.research-infrastructures.eu and ci.d4science.org.
Plain http requests are redirected to...
Andrea Dell'Amico
04:19 PM Task #308 (Closed): SSL certificates needed for nexus.d4science.org and ci.d4science.org
The certificates are in place. Andrea Dell'Amico
03:01 PM Support #353: Uri resolver: URL_REWRITE for data.d4science.org
Tommaso, any update on this? Francesco Mangiacrapa

Jul 03, 2015

05:08 PM Task #317: manage.research-infrastructures.eu needs some love
Another problem I've just run into: it does not support UTF8. But could it be a LDAP encoding problem?
Andrea Dell'Amico
04:57 PM Support #353 (Closed): Uri resolver: URL_REWRITE for data.d4science.org
An URL_REWRITE for data.d4science.org should be realized to rewrite following URLs:
http://data.d4science.org/id?q...
Francesco Mangiacrapa
04:00 PM Task #324 (Paused): Install haproxy as couchdb frontend
Andrea Dell'Amico
04:00 PM Task #324 (In Progress): Install haproxy as couchdb frontend
haproxy is the default proxy to split the requests to a couchdb cluster > 2.0. We will configure it when a 2.0 cluste... Andrea Dell'Amico
03:59 PM Task #325 (Paused): Nagios monitoring for couchdb
Andrea Dell'Amico
03:58 PM Task #325 (In Progress): Nagios monitoring for couchdb
We will set up the monitoring infrastructure for the 2.0 version. Andrea Dell'Amico
03:57 PM Task #323 (Paused): Install couchdb 2.0 with fauxton
Andrea Dell'Amico
03:57 PM Task #323 (In Progress): Install couchdb 2.0 with fauxton

couchdb 2.0 is a pain to compile and after a lot of manual tweaking it does not start. We will try again when the s...
Andrea Dell'Amico
03:56 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
couchdb 2.0 is still too immature to be used.
There's a single couchdb 1.6.1 instance answering at http://accounti...
Andrea Dell'Amico
12:31 PM Task #348 (Closed): Reset crontab required on the development environment AMQ
Andrea Dell'Amico
12:31 PM Task #348 (In Progress): Reset crontab required on the development environment AMQ
Done:
~~~
00 00 * * 0 /root/restartBroker.sh > /root/restartBroker.log 2>&1
~~~
Andrea Dell'Amico
12:29 PM Task #348 (Closed): Reset crontab required on the development environment AMQ
The previous periodic reset crontab should be reactivated. Gianpaolo Coro

Jul 01, 2015

02:57 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension
The files currently produced by StatMan are:
png
csv
gif
zip
txt
no-extension (binary)
The images produced b...
Gianpaolo Coro
02:30 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension
Gianpaolo, can you provide a list of expected mimetypes that we could check/fix when we import resources onto Tabular... Fabio Sinibaldi
01:33 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension
The problem is that a invalid MimeType is set. PNG image has MimeType "image/png", instead is set "png".
~~~
R...
Giancarlo Panichi
01:12 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension
The files are still downloaded without extension. Probably the mime-type is still not associated to the images produc... Gianpaolo Coro
12:32 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
**This ticket demonstrates how the D4Science e-Infrastructure is able to operate advanced management and processing o... Gianpaolo Coro
12:24 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
As last step, we forecasted the signals of the barycentres for 2013, given the history of data between 1983 and 2012.... Gianpaolo Coro
11:57 AM Support #327 (Closed): Cluster MongoDB (dev and prod): distribution of members
All members must be completely separated from each other:
-server
-storage server
-physical disk
could you plea...
Roberto Cirillo
10:30 AM Task #296 (Closed): Ask https certificate for bluebridge.d4science.org
Certificate for bluebridge.d4science.org received. Tommaso Piccioli

Jun 30, 2015

04:45 PM Task #287: Integrate IRD-IFREMER stock assessment processes
The integration of the ICCAT-VPA algorithm on the Statistical Manager (SM) was successful.
An algorithm is available...
Gianpaolo Coro
12:26 PM Task #325 (Closed): Nagios monitoring for couchdb
* nagios
* ganglia
Andrea Dell'Amico
12:25 PM Task #324 (Closed): Install haproxy as couchdb frontend
* Install haproxy on accounting-d4s.d4science.org
* Configure haproxy as couchdb frontend
Andrea Dell'Amico
12:24 PM Task #323 (Closed): Install couchdb 2.0 with fauxton
Install coucdb0[1:4]-d4s.d4science.org with couchdb 2.0 and fauxton
Andrea Dell'Amico
12:18 PM Task #294 (Closed): SSL certificates for the couchdb cluster
Andrea Dell'Amico

Jun 29, 2015

07:57 PM Task #299: New VM to host a Virtuoso instance
Added a role that installs virtuoso from the ubuntu packages and sets a more sane 'virtuoso' user instead of root.
Andrea Dell'Amico
07:31 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
In order to discover inner periodicities in the trends, we applied short-time Fourier analysis. This technique uses a... Gianpaolo Coro
05:15 PM Task #319 (Closed): Mount /tmp folder on SAN for descramble.d4science.org
Done. Tommaso Piccioli
03:43 PM Task #319 (Closed): Mount /tmp folder on SAN for descramble.d4science.org
The /tmp folder of descramble.d4science.org should be on a SAN and of at least 50 GB Massimiliano Assante
04:44 PM Incident #318 (Closed): Error uploading file onto the Workspace from service
Valentina Marioli
04:44 PM Incident #318: Error uploading file onto the Workspace from service
We have fixed the issue removing all RMI calls from HL to Jackrabbit. Valentina Marioli
02:58 PM Incident #318: Error uploading file onto the Workspace from service
Up to now, in order to address the issue we have:
1. updated security packages on statistical-manager.d.d4science....
Gianpaolo Coro
02:52 PM Incident #318 (Closed): Error uploading file onto the Workspace from service
After introducing https communication with the Workspace, there is a blocking issue on the Statistical Manager when u... Gianpaolo Coro

Jun 26, 2015

06:27 PM Task #317: manage.research-infrastructures.eu needs some love
I forgot: the ability to bulk add users from a text file.
Andrea Dell'Amico
06:26 PM Task #317 (Rejected): manage.research-infrastructures.eu needs some love
The application needs a better look and lacks some basic functionalities. While waiting a more modern authentication ... Andrea Dell'Amico
04:49 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension
One possible solution has been realized and is put on dev portal.
GP can check if it is okay.
Giancarlo Panichi
04:36 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
Figure 7 reports the spatial extension of the overall fishing locations and of their respective barycenters at differ... Gianpaolo Coro
03:14 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
The attached figures report several representations of the benchmark IOTC data. Figure 1 and 2 show the spatial distr... Gianpaolo Coro
02:29 PM Task #172: Shut down the old d4science Trac instance
Pasquale Pagano wrote:
> According to my knowledge
>
> > d4science.research-infrastructures.eu
> - to be dismis...
Andrea Dell'Amico
01:51 PM Task #307 (In Progress): New SSL certificates for manage.research-infrastructures.eu and issue.openaire.research-infrastructures.eu
These are all the names in the manage.research-infrastructures.eu
X509v3 Subject Alternative Name:
...
Tommaso Piccioli
01:45 PM Support #306 (Feedback): Install additional R packages on the Worker nodes to support IRD - IFREMER computations
The two plugins are installed on all the worker nodes. Hope I got the right nodes list:
~~~
node11.d4science.org ...
Andrea Dell'Amico
01:43 PM Support #306: Install additional R packages on the Worker nodes to support IRD - IFREMER computations
I added a new script called `install_R_modules.sh` inside the d4science-ghn-cluster.
It runs the playbook with the...
Andrea Dell'Amico
01:41 PM Task #315 (Closed): Expand the R ansible role to let it install R plugins from sources
Andrea Dell'Amico
01:41 PM Task #315 (In Progress): Expand the R ansible role to let it install R plugins from sources
The source files are downloaded inside /var/cache/R and installed from there.
Andrea Dell'Amico
01:40 PM Task #315 (Closed): Expand the R ansible role to let it install R plugins from sources
Some R plugins need to be installed from source.
Add this step to the library R role.
Andrea Dell'Amico

Jun 25, 2015

05:53 PM Task #299: New VM to host a Virtuoso instance
We will start with a 300GB data disk Andrea Dell'Amico
05:33 PM Task #299 (In Progress): New VM to host a Virtuoso instance
Other requirements:
8 GB RAM
2 CPUs
1 TB data disk
Andrea Dell'Amico
05:32 PM Task #299: New VM to host a Virtuoso instance
The new VM hostname will be virtuoso-openaire.d4science.org. Its IP 146.48.123.6.
Andrea Dell'Amico
05:36 PM Support #306 (In Progress): Install additional R packages on the Worker nodes to support IRD - IFREMER computations
Only a fraction of the worker nodes are installed via the provisioning system. I'm going to create a (hopefully) temp... Andrea Dell'Amico
03:12 PM Support #306 (Closed): Install additional R packages on the Worker nodes to support IRD - IFREMER computations
The following packages are required on the Worker nodes machines both in the development and the production environme... Gianpaolo Coro
05:32 PM Task #301 (Closed): New servername for node0.d.dli.research-infrastructures.eu
Andrea Dell'Amico
01:11 PM Task #301 (Feedback): New servername for node0.d.dli.research-infrastructures.eu
Done. Andrea Dell'Amico
12:47 PM Task #301: New servername for node0.d.dli.research-infrastructures.eu
I need also installed the following python modules using pip:
-flask (latest)
-pysolr
Sandro La Bruzzo
11:32 AM Task #301 (In Progress): New servername for node0.d.dli.research-infrastructures.eu
The hostname has been registered on the DNS server.
The virtualhost is ready to be provided.
Andrea Dell'Amico
11:13 AM Task #301 (Closed): New servername for node0.d.dli.research-infrastructures.eu
The hostname is crossdata.research-infrastructure.eu and needs to be associated to a virtualhost that redirects all t... Andrea Dell'Amico
04:09 PM Task #281: Move to the D4Science.org domain from the Research infrastructure domain
The new URL are now working for plain http.
Andrea Dell'Amico
03:42 PM Task #281 (In Progress): Move to the D4Science.org domain from the Research infrastructure domain
Added nexus.d4science.org as CNAME for maven.research-infrastructures.eu and ci.d4science.org as CNAME for master.ci.... Andrea Dell'Amico
03:57 PM Task #294: SSL certificates for the couchdb cluster
These 2 certificate requested:
accounting-d4s.d4science.org
couchdb-d4s.d4science.org
with alternative nam...
Tommaso Piccioli
03:56 PM Task #308 (In Progress): SSL certificates needed for nexus.d4science.org and ci.d4science.org
3 certificates requested Tommaso Piccioli
03:44 PM Task #308: SSL certificates needed for nexus.d4science.org and ci.d4science.org
Andrea Dell'Amico wrote:
> We need SSL certificates for the two hosts:
>
> nexus.d4science.org
> ci.d4science.or...
Andrea Dell'Amico
03:38 PM Task #308 (Closed): SSL certificates needed for nexus.d4science.org and ci.d4science.org
We need SSL certificates for the two hosts:
nexus.d4science.org
ci.d4science.org
Andrea Dell'Amico
03:29 PM Task #307 (Closed): New SSL certificates for manage.research-infrastructures.eu and issue.openaire.research-infrastructures.eu
The two services need certificates from a _known_ CA. Andrea Dell'Amico
03:16 PM Task #287: Integrate IRD-IFREMER stock assessment processes
The process is compatible with the e-Infrastructure nodes.
I have parametrized the inputs and made the process re...
Gianpaolo Coro
12:46 PM Incident #303 (Closed): Create alias for support.d4science.org (support.d4science.research-infrastructures.eu)
We still have production applications redirecting to the previous TRAC (support.d4science.research-infrastructures.eu... Massimiliano Assante
12:16 PM Task #296 (In Progress): Ask https certificate for bluebridge.d4science.org
Certificate requested. Tommaso Piccioli
10:10 AM Support #280 (Closed): ETICS down
Roberto Cirillo

Jun 24, 2015

10:03 PM Support #300 (Closed): Add the D-Net people to the d4science project
Luca Frosini
10:01 PM Support #300 (In Progress): Add the D-Net people to the d4science project
Luca Frosini
08:40 PM Support #300 (Closed): Add the D-Net people to the d4science project
The D-Net people need access to the d4science infrastructure project Andrea Dell'Amico
08:38 PM Task #299 (Closed): New VM to host a Virtuoso instance
A new VM is needed to host a virtuoso install for the OpenAire project. See https://issue.openaire.research-infrastru... Andrea Dell'Amico
07:50 PM Task #290 (In Progress): Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
Please find below some candidate text I managed to draft. Comments are welcome.
I doubt the current layout works w...
Leonardo Candela
04:48 PM Task #294 (In Progress): SSL certificates for the couchdb cluster
We only need a certificate for accounting-d4s.d4science.org, for now.
Andrea Dell'Amico
12:05 PM Task #294 (Paused): SSL certificates for the couchdb cluster
We have to wait, the final architecture could be different. Andrea Dell'Amico
12:04 PM Task #294 (In Progress): SSL certificates for the couchdb cluster
Andrea Dell'Amico
04:47 PM Task #279 (Closed): Install the Fauxton couchdb interface
This becomes part of the couchdb 2.0 install
Andrea Dell'Amico
04:46 PM Task #110 (In Progress): Create 3 Virtual Machine for developement to host new noSQL Db cluster
couchdb 1.6 is too limited and its replica mechanism very fragile.
The still unreleased 2.0 version has a better c...
Andrea Dell'Amico
03:41 PM Task #289 (Closed): Create Liferay Theme for Descramble Project VRE
Massimiliano Assante
03:40 PM Task #288 (Closed): Deploy gCube Portal Bundle on descramble.d4science.org
Massimiliano Assante
12:17 PM Task #297: New ldap instance
Actually it will be used by liferay to export all the users registered on the portals, whether they are or not presen... Massimiliano Assante
12:10 PM Task #297 (Closed): New ldap instance
A new (open)ldap instance is needed.
It will be used by liferay to memorize the users registered on the portals and ...
Andrea Dell'Amico
12:07 PM Task #207 (Closed): Document the R installation on the statistical-manager nodes.
Gianpaolo Coro
10:43 AM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Luca Frosini wrote:
> @massimiliano.assante so you can patch liferay to insert in the "external" LDAP the users inst...
Massimiliano Assante
10:40 AM Task #296 (Closed): Ask https certificate for bluebridge.d4science.org
A new certificate should is necessary for bluebridge.d4science.org Massimiliano Assante
09:47 AM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics
In the following, I report a workflow for this activity. The approach will use catch statistics by IOTC as a case stu... Gianpaolo Coro
08:47 AM Incident #295 (Closed): D4Science site down ...
Massimiliano Assante
08:47 AM Incident #295 (In Progress): D4Science site down ...
Massimiliano Assante

Jun 23, 2015

07:34 PM Incident #295 (Closed): D4Science site down ...
While editing one of the pages of www.d4science.org the site start becoming unresponsive.
It is currently down.
...
Leonardo Candela
05:40 PM Task #110 (Feedback): Create 3 Virtual Machine for developement to host new noSQL Db cluster
Andrea Dell'Amico
05:40 PM Task #110 (In Progress): Create 3 Virtual Machine for developement to host new noSQL Db cluster
Andrea Dell'Amico
04:57 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster
The three machines are configured. There is an admin user.
Andrea Dell'Amico
05:40 PM Task #279 (In Progress): Install the Fauxton couchdb interface
The git repo: https://github.com/apache/couchdb-fauxton Andrea Dell'Amico
05:32 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
@massimiliano.assante so you can patch liferay to insert in the "external" LDAP the users instead of creating only on... Luca Frosini
04:36 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Yes liferay can support more than one ldap server Massimiliano Assante
04:09 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
Massimiliano Assante wrote:
> The Redmine instance for a given project should be accessed by any VRE user serving th...
Andrea Dell'Amico
03:26 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)
For example the users belonging to the PARTHENOS VRE should be able to join the Redmine instance of Parthenos Massimiliano Assante
03:25 PM Task #293 (Closed): Make any Liferay user to access Redmine (through LDAP Credentials)
The Redmine instance for a given project should be accessed by any VRE user serving this project.
In this moment we...
Massimiliano Assante
05:10 PM Task #294 (Closed): SSL certificates for the couchdb cluster
Four cerficates are needed for the hosts:
couchdb01-d4s.d4science.org
couchdb02-d4s.d4science.org
couchdb03-d4s.d4...
Andrea Dell'Amico
04:49 PM Task #288: Deploy gCube Portal Bundle on descramble.d4science.org
The Portal Bundle was Deployed, configuration is in progress http://descramble.d4science.org Massimiliano Assante
12:16 PM Task #288 (In Progress): Deploy gCube Portal Bundle on descramble.d4science.org
Massimiliano Assante
12:14 PM Task #288 (Closed): Deploy gCube Portal Bundle on descramble.d4science.org
The descramble.d4science.org should me empowered by the gCube Portal Bundle Massimiliano Assante
04:24 PM Task #286 (Closed): Integrate algorithms developed by Brazilian student
The integration was successful also on the student's side. Gianpaolo Coro
01:11 PM Task #286 (In Progress): Integrate algorithms developed by Brazilian student
The algorithm has been integrated and is currently running in the PGFA-UFMT vre.
Here is the link to the StatMan in...
Gianpaolo Coro
10:45 AM Task #286 (Closed): Integrate algorithms developed by Brazilian student
A request came to integrate an algorithm developed by a Brazilian student on the PGFA-UFMT VRE. Gianpaolo Coro
03:24 PM Task #290: Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
EGI-Engage should be reported but not here. In this case we should report that D4Science exploits EGI FedCloud resour... Pasquale Pagano
03:14 PM Task #290 (Closed): Update D4Science Org Website Empowering Section with new projects served by the Infrastructure
This page (https://www.d4science.org/empowering) should be modified by adding the new projects
* PARTHENOS
* DES...
Massimiliano Assante
12:15 PM Task #289 (Closed): Create Liferay Theme for Descramble Project VRE
A new Liferay 6.0 Theme should be created for supporting the Descramble Project VRE Massimiliano Assante
10:52 AM Task #287 (Closed): Integrate IRD-IFREMER stock assessment processes
A stock assessment process developed by IRD and IFREMER has to be integrated with StatMan and possibly parallelised. ... Gianpaolo Coro

Jun 22, 2015

06:48 PM Task #262 (Closed): Create new VM for descramble.d4science.org
descramble.d4science.org up and running
apache proxy reconfigured with new name and SSL certificate
Note that you m...
Tommaso Piccioli
10:28 AM Task #262: Create new VM for descramble.d4science.org
Tom, we need this VM asap Massimiliano Assante
06:48 PM Task #259 (Closed): Ask https certificate for descramble.d4science.org
Tommaso Piccioli
06:23 PM Task #259 (Resolved): Ask https certificate for descramble.d4science.org
Tommaso Piccioli
 

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