D4Science Infrastructure

Jul 06, 2015

04:41 PM Task #281 (Closed): Move to the D4Science.org domain from the Research infrastructure domain

ssl is enabled for both ci.research-infrastructures.eu and ci.d4science.org.
Plain http requests are redirected to... Andrea Dell'Amico

04:19 PM Task #308 (Closed): SSL certificates needed for nexus.d4science.org and ci.d4science.org

The certificates are in place. Andrea Dell'Amico

03:01 PM Support #353: Uri resolver: URL_REWRITE for data.d4science.org

Tommaso, any update on this? Francesco Mangiacrapa

Jul 03, 2015

05:08 PM Task #317: manage.research-infrastructures.eu needs some love

Another problem I've just run into: it does not support UTF8. But could it be a LDAP encoding problem?
Andrea Dell'Amico

04:57 PM Support #353 (Closed): Uri resolver: URL_REWRITE for data.d4science.org

An URL_REWRITE for data.d4science.org should be realized to rewrite following URLs:
http://data.d4science.org/id?q... Francesco Mangiacrapa

04:00 PM Task #324 (Paused): Install haproxy as couchdb frontend

Andrea Dell'Amico

04:00 PM Task #324 (In Progress): Install haproxy as couchdb frontend

haproxy is the default proxy to split the requests to a couchdb cluster > 2.0. We will configure it when a 2.0 cluste... Andrea Dell'Amico

03:59 PM Task #325 (Paused): Nagios monitoring for couchdb

Andrea Dell'Amico

03:58 PM Task #325 (In Progress): Nagios monitoring for couchdb

We will set up the monitoring infrastructure for the 2.0 version. Andrea Dell'Amico

03:57 PM Task #323 (Paused): Install couchdb 2.0 with fauxton

Andrea Dell'Amico

03:57 PM Task #323 (In Progress): Install couchdb 2.0 with fauxton

couchdb 2.0 is a pain to compile and after a lot of manual tweaking it does not start. We will try again when the s... Andrea Dell'Amico

03:56 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

couchdb 2.0 is still too immature to be used.
There's a single couchdb 1.6.1 instance answering at http://accounti... Andrea Dell'Amico

12:31 PM Task #348 (Closed): Reset crontab required on the development environment AMQ

Andrea Dell'Amico

12:31 PM Task #348 (In Progress): Reset crontab required on the development environment AMQ

Done:
~~~
00 00 * * 0 /root/restartBroker.sh > /root/restartBroker.log 2>&1
~~~ Andrea Dell'Amico

12:29 PM Task #348 (Closed): Reset crontab required on the development environment AMQ

The previous periodic reset crontab should be reactivated. Gianpaolo Coro

Jul 01, 2015

02:57 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension

The files currently produced by StatMan are:
png
csv
gif
zip
txt
no-extension (binary)
The images produced b... Gianpaolo Coro

02:30 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension

Gianpaolo, can you provide a list of expected mimetypes that we could check/fix when we import resources onto Tabular... Fabio Sinibaldi

01:33 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension

The problem is that a invalid MimeType is set. PNG image has MimeType "image/png", instead is set "png".
~~~
R... Giancarlo Panichi

01:12 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension

The files are still downloaded without extension. Probably the mime-type is still not associated to the images produc... Gianpaolo Coro

12:32 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

**This ticket demonstrates how the D4Science e-Infrastructure is able to operate advanced management and processing o... Gianpaolo Coro

12:24 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

As last step, we forecasted the signals of the barycentres for 2013, given the history of data between 1983 and 2012.... Gianpaolo Coro

11:57 AM Support #327 (Closed): Cluster MongoDB (dev and prod): distribution of members

All members must be completely separated from each other:
-server
-storage server
-physical disk
could you plea... Roberto Cirillo

10:30 AM Task #296 (Closed): Ask https certificate for bluebridge.d4science.org

Certificate for bluebridge.d4science.org received. Tommaso Piccioli

Jun 30, 2015

04:45 PM Task #287: Integrate IRD-IFREMER stock assessment processes

The integration of the ICCAT-VPA algorithm on the Statistical Manager (SM) was successful.
An algorithm is available... Gianpaolo Coro

12:26 PM Task #325 (Closed): Nagios monitoring for couchdb

* nagios
* ganglia
Andrea Dell'Amico

12:25 PM Task #324 (Closed): Install haproxy as couchdb frontend

* Install haproxy on accounting-d4s.d4science.org
* Configure haproxy as couchdb frontend Andrea Dell'Amico

12:24 PM Task #323 (Closed): Install couchdb 2.0 with fauxton

Install coucdb0[1:4]-d4s.d4science.org with couchdb 2.0 and fauxton
Andrea Dell'Amico

12:18 PM Task #294 (Closed): SSL certificates for the couchdb cluster

Andrea Dell'Amico

Jun 29, 2015

07:57 PM Task #299: New VM to host a Virtuoso instance

Added a role that installs virtuoso from the ubuntu packages and sets a more sane 'virtuoso' user instead of root.
Andrea Dell'Amico

07:31 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

In order to discover inner periodicities in the trends, we applied short-time Fourier analysis. This technique uses a... Gianpaolo Coro

05:15 PM Task #319 (Closed): Mount /tmp folder on SAN for descramble.d4science.org

Done. Tommaso Piccioli

03:43 PM Task #319 (Closed): Mount /tmp folder on SAN for descramble.d4science.org

The /tmp folder of descramble.d4science.org should be on a SAN and of at least 50 GB Massimiliano Assante

04:44 PM Incident #318 (Closed): Error uploading file onto the Workspace from service

Valentina Marioli

04:44 PM Incident #318: Error uploading file onto the Workspace from service

We have fixed the issue removing all RMI calls from HL to Jackrabbit. Valentina Marioli

02:58 PM Incident #318: Error uploading file onto the Workspace from service

Up to now, in order to address the issue we have:
1. updated security packages on statistical-manager.d.d4science.... Gianpaolo Coro

02:52 PM Incident #318 (Closed): Error uploading file onto the Workspace from service

After introducing https communication with the Workspace, there is a blocking issue on the Statistical Manager when u... Gianpaolo Coro

Jun 26, 2015

06:27 PM Task #317: manage.research-infrastructures.eu needs some love

I forgot: the ability to bulk add users from a text file.
Andrea Dell'Amico

06:26 PM Task #317 (Rejected): manage.research-infrastructures.eu needs some love

The application needs a better look and lacks some basic functionalities. While waiting a more modern authentication ... Andrea Dell'Amico

04:49 PM Incident #258: TabMan - the files associated to the resources are downloaded without extension

One possible solution has been realized and is put on dev portal.
GP can check if it is okay. Giancarlo Panichi

04:36 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

Figure 7 reports the spatial extension of the overall fishing locations and of their respective barycenters at differ... Gianpaolo Coro

03:14 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

The attached figures report several representations of the benchmark IOTC data. Figure 1 and 2 show the spatial distr... Gianpaolo Coro

02:29 PM Task #172: Shut down the old d4science Trac instance

Pasquale Pagano wrote:
> According to my knowledge
>
> > d4science.research-infrastructures.eu
> - to be dismis... Andrea Dell'Amico

01:51 PM Task #307 (In Progress): New SSL certificates for manage.research-infrastructures.eu and issue.openaire.research-infrastructures.eu

These are all the names in the manage.research-infrastructures.eu
X509v3 Subject Alternative Name:
... Tommaso Piccioli

01:45 PM Support #306 (Feedback): Install additional R packages on the Worker nodes to support IRD - IFREMER computations

The two plugins are installed on all the worker nodes. Hope I got the right nodes list:
~~~
node11.d4science.org ... Andrea Dell'Amico

01:43 PM Support #306: Install additional R packages on the Worker nodes to support IRD - IFREMER computations

I added a new script called `install_R_modules.sh` inside the d4science-ghn-cluster.
It runs the playbook with the... Andrea Dell'Amico

01:41 PM Task #315 (Closed): Expand the R ansible role to let it install R plugins from sources

Andrea Dell'Amico

01:41 PM Task #315 (In Progress): Expand the R ansible role to let it install R plugins from sources

The source files are downloaded inside /var/cache/R and installed from there.
Andrea Dell'Amico

01:40 PM Task #315 (Closed): Expand the R ansible role to let it install R plugins from sources

Some R plugins need to be installed from source.
Add this step to the library R role. Andrea Dell'Amico

Jun 25, 2015

05:53 PM Task #299: New VM to host a Virtuoso instance

We will start with a 300GB data disk Andrea Dell'Amico

05:33 PM Task #299 (In Progress): New VM to host a Virtuoso instance

Other requirements:
8 GB RAM
2 CPUs
1 TB data disk
Andrea Dell'Amico

05:32 PM Task #299: New VM to host a Virtuoso instance

The new VM hostname will be virtuoso-openaire.d4science.org. Its IP 146.48.123.6.
Andrea Dell'Amico

05:36 PM Support #306 (In Progress): Install additional R packages on the Worker nodes to support IRD - IFREMER computations

Only a fraction of the worker nodes are installed via the provisioning system. I'm going to create a (hopefully) temp... Andrea Dell'Amico

03:12 PM Support #306 (Closed): Install additional R packages on the Worker nodes to support IRD - IFREMER computations

The following packages are required on the Worker nodes machines both in the development and the production environme... Gianpaolo Coro

05:32 PM Task #301 (Closed): New servername for node0.d.dli.research-infrastructures.eu

Andrea Dell'Amico

01:11 PM Task #301 (Feedback): New servername for node0.d.dli.research-infrastructures.eu

Done. Andrea Dell'Amico

12:47 PM Task #301: New servername for node0.d.dli.research-infrastructures.eu

I need also installed the following python modules using pip:
-flask (latest)
-pysolr Sandro La Bruzzo

11:32 AM Task #301 (In Progress): New servername for node0.d.dli.research-infrastructures.eu

The hostname has been registered on the DNS server.
The virtualhost is ready to be provided.
Andrea Dell'Amico

11:13 AM Task #301 (Closed): New servername for node0.d.dli.research-infrastructures.eu

The hostname is crossdata.research-infrastructure.eu and needs to be associated to a virtualhost that redirects all t... Andrea Dell'Amico

04:09 PM Task #281: Move to the D4Science.org domain from the Research infrastructure domain

The new URL are now working for plain http.
Andrea Dell'Amico

03:42 PM Task #281 (In Progress): Move to the D4Science.org domain from the Research infrastructure domain

Added nexus.d4science.org as CNAME for maven.research-infrastructures.eu and ci.d4science.org as CNAME for master.ci.... Andrea Dell'Amico

03:57 PM Task #294: SSL certificates for the couchdb cluster

These 2 certificate requested:
accounting-d4s.d4science.org
couchdb-d4s.d4science.org
with alternative nam... Tommaso Piccioli

03:56 PM Task #308 (In Progress): SSL certificates needed for nexus.d4science.org and ci.d4science.org

3 certificates requested Tommaso Piccioli

03:44 PM Task #308: SSL certificates needed for nexus.d4science.org and ci.d4science.org

Andrea Dell'Amico wrote:
> We need SSL certificates for the two hosts:
>
> nexus.d4science.org
> ci.d4science.or... Andrea Dell'Amico

03:38 PM Task #308 (Closed): SSL certificates needed for nexus.d4science.org and ci.d4science.org

We need SSL certificates for the two hosts:
nexus.d4science.org
ci.d4science.org Andrea Dell'Amico

03:29 PM Task #307 (Closed): New SSL certificates for manage.research-infrastructures.eu and issue.openaire.research-infrastructures.eu

The two services need certificates from a _known_ CA. Andrea Dell'Amico

03:16 PM Task #287: Integrate IRD-IFREMER stock assessment processes

The process is compatible with the e-Infrastructure nodes.
I have parametrized the inputs and made the process re... Gianpaolo Coro

12:46 PM Incident #303 (Closed): Create alias for support.d4science.org (support.d4science.research-infrastructures.eu)

We still have production applications redirecting to the previous TRAC (support.d4science.research-infrastructures.eu... Massimiliano Assante

12:16 PM Task #296 (In Progress): Ask https certificate for bluebridge.d4science.org

Certificate requested. Tommaso Piccioli

10:10 AM Support #280 (Closed): ETICS down

Roberto Cirillo

Jun 24, 2015

10:03 PM Support #300 (Closed): Add the D-Net people to the d4science project

Luca Frosini

10:01 PM Support #300 (In Progress): Add the D-Net people to the d4science project

Luca Frosini

08:40 PM Support #300 (Closed): Add the D-Net people to the d4science project

The D-Net people need access to the d4science infrastructure project Andrea Dell'Amico

08:38 PM Task #299 (Closed): New VM to host a Virtuoso instance

A new VM is needed to host a virtuoso install for the OpenAire project. See https://issue.openaire.research-infrastru... Andrea Dell'Amico

07:50 PM Task #290 (In Progress): Update D4Science Org Website Empowering Section with new projects served by the Infrastructure

Please find below some candidate text I managed to draft. Comments are welcome.
I doubt the current layout works w... Leonardo Candela

04:48 PM Task #294 (In Progress): SSL certificates for the couchdb cluster

We only need a certificate for accounting-d4s.d4science.org, for now.
Andrea Dell'Amico

12:05 PM Task #294 (Paused): SSL certificates for the couchdb cluster

We have to wait, the final architecture could be different. Andrea Dell'Amico

12:04 PM Task #294 (In Progress): SSL certificates for the couchdb cluster

Andrea Dell'Amico

04:47 PM Task #279 (Closed): Install the Fauxton couchdb interface

This becomes part of the couchdb 2.0 install
Andrea Dell'Amico

04:46 PM Task #110 (In Progress): Create 3 Virtual Machine for developement to host new noSQL Db cluster

couchdb 1.6 is too limited and its replica mechanism very fragile.
The still unreleased 2.0 version has a better c... Andrea Dell'Amico

03:41 PM Task #289 (Closed): Create Liferay Theme for Descramble Project VRE

Massimiliano Assante

03:40 PM Task #288 (Closed): Deploy gCube Portal Bundle on descramble.d4science.org

Massimiliano Assante

12:17 PM Task #297: New ldap instance

Actually it will be used by liferay to export all the users registered on the portals, whether they are or not presen... Massimiliano Assante

12:10 PM Task #297 (Closed): New ldap instance

A new (open)ldap instance is needed.
It will be used by liferay to memorize the users registered on the portals and ... Andrea Dell'Amico

12:07 PM Task #207 (Closed): Document the R installation on the statistical-manager nodes.

Gianpaolo Coro

10:43 AM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)

Luca Frosini wrote:
> @massimiliano.assante so you can patch liferay to insert in the "external" LDAP the users inst... Massimiliano Assante

10:40 AM Task #296 (Closed): Ask https certificate for bluebridge.d4science.org

A new certificate should is necessary for bluebridge.d4science.org Massimiliano Assante

09:47 AM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

In the following, I report a workflow for this activity. The approach will use catch statistics by IOTC as a case stu... Gianpaolo Coro

08:47 AM Incident #295 (Closed): D4Science site down ...

Massimiliano Assante

08:47 AM Incident #295 (In Progress): D4Science site down ...

Massimiliano Assante

Jun 23, 2015

07:34 PM Incident #295 (Closed): D4Science site down ...

While editing one of the pages of www.d4science.org the site start becoming unresponsive.
It is currently down.
... Leonardo Candela

05:40 PM Task #110 (Feedback): Create 3 Virtual Machine for developement to host new noSQL Db cluster

Andrea Dell'Amico

05:40 PM Task #110 (In Progress): Create 3 Virtual Machine for developement to host new noSQL Db cluster

Andrea Dell'Amico

04:57 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

The three machines are configured. There is an admin user.
Andrea Dell'Amico

05:40 PM Task #279 (In Progress): Install the Fauxton couchdb interface

The git repo: https://github.com/apache/couchdb-fauxton Andrea Dell'Amico

05:32 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)

@massimiliano.assante so you can patch liferay to insert in the "external" LDAP the users instead of creating only on... Luca Frosini

04:36 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)

Yes liferay can support more than one ldap server Massimiliano Assante

04:09 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)

Massimiliano Assante wrote:
> The Redmine instance for a given project should be accessed by any VRE user serving th... Andrea Dell'Amico

03:26 PM Task #293: Make any Liferay user to access Redmine (through LDAP Credentials)

For example the users belonging to the PARTHENOS VRE should be able to join the Redmine instance of Parthenos Massimiliano Assante

03:25 PM Task #293 (Closed): Make any Liferay user to access Redmine (through LDAP Credentials)

The Redmine instance for a given project should be accessed by any VRE user serving this project.
In this moment we... Massimiliano Assante

05:10 PM Task #294 (Closed): SSL certificates for the couchdb cluster

Four cerficates are needed for the hosts:
couchdb01-d4s.d4science.org
couchdb02-d4s.d4science.org
couchdb03-d4s.d4... Andrea Dell'Amico

04:49 PM Task #288: Deploy gCube Portal Bundle on descramble.d4science.org

The Portal Bundle was Deployed, configuration is in progress http://descramble.d4science.org Massimiliano Assante

12:16 PM Task #288 (In Progress): Deploy gCube Portal Bundle on descramble.d4science.org

Massimiliano Assante

12:14 PM Task #288 (Closed): Deploy gCube Portal Bundle on descramble.d4science.org

The descramble.d4science.org should me empowered by the gCube Portal Bundle Massimiliano Assante

04:24 PM Task #286 (Closed): Integrate algorithms developed by Brazilian student

The integration was successful also on the student's side. Gianpaolo Coro

01:11 PM Task #286 (In Progress): Integrate algorithms developed by Brazilian student

The algorithm has been integrated and is currently running in the PGFA-UFMT vre.
Here is the link to the StatMan in... Gianpaolo Coro

10:45 AM Task #286 (Closed): Integrate algorithms developed by Brazilian student

A request came to integrate an algorithm developed by a Brazilian student on the PGFA-UFMT VRE. Gianpaolo Coro

03:24 PM Task #290: Update D4Science Org Website Empowering Section with new projects served by the Infrastructure

EGI-Engage should be reported but not here. In this case we should report that D4Science exploits EGI FedCloud resour... Pasquale Pagano

03:14 PM Task #290 (Closed): Update D4Science Org Website Empowering Section with new projects served by the Infrastructure

This page (https://www.d4science.org/empowering) should be modified by adding the new projects
* PARTHENOS
* DES... Massimiliano Assante

12:15 PM Task #289 (Closed): Create Liferay Theme for Descramble Project VRE

A new Liferay 6.0 Theme should be created for supporting the Descramble Project VRE Massimiliano Assante

10:52 AM Task #287 (Closed): Integrate IRD-IFREMER stock assessment processes

A stock assessment process developed by IRD and IFREMER has to be integrated with StatMan and possibly parallelised. ... Gianpaolo Coro

Jun 22, 2015

06:48 PM Task #262 (Closed): Create new VM for descramble.d4science.org

descramble.d4science.org up and running
apache proxy reconfigured with new name and SSL certificate
Note that you m... Tommaso Piccioli

10:28 AM Task #262: Create new VM for descramble.d4science.org

Tom, we need this VM asap Massimiliano Assante

06:48 PM Task #259 (Closed): Ask https certificate for descramble.d4science.org

Tommaso Piccioli

06:23 PM Task #259 (Resolved): Ask https certificate for descramble.d4science.org

Tommaso Piccioli

Jun 20, 2015

09:14 AM Support #280 (In Progress): ETICS down

DNS issues have been solved. The system is now accessible.
Please check from your side. Paolo Fabriani

Jun 19, 2015

06:49 PM Task #172: Shut down the old d4science Trac instance

Pasquale Pagano wrote:
> Claudio/ Paolo, please tell us what to do with the following
> > driver.research-infrast... Claudio Atzori

06:33 PM Task #172: Shut down the old d4science Trac instance

According to my knowledge
> d4science.research-infrastructures.eu
- to be dismissed
> gcore.research-infrastruc... Pasquale Pagano

06:15 PM Incident #163 (Closed): Redmine - change the duration of the working day

Luca Frosini

05:55 PM Incident #171 (Closed): Recently updated file for gCubeApps/BlueBridgeProject Folder error

Valentina Marioli

05:45 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error

Ok, thanks. This issue is therefore related to a bud in the HL. I suggest to close this ticket and open a specific on... Pasquale Pagano

05:15 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error

The problem for "BlueBRIDGE_Part_B_Sec1-3 20150113.docx" file, has been identified:
if we try to move a file to anot... Roberto Cirillo

05:54 PM Task #281 (Closed): Move to the D4Science.org domain from the Research infrastructure domain

The following machine should become available under the d4science.org domain
- http://maven.research-infrastructur... Pasquale Pagano

05:15 PM Support #280: ETICS down

I got confirmation there are DNS problems at company level. The support team is currently working at it.
Paolo Fabriani

04:52 PM Support #280: ETICS down

The server and service are up; however they seem to be unreachable from the outside.
I'm asking support to the netwo... Paolo Fabriani

04:34 PM Support #280 (Closed): ETICS down

The etics server seems to be down:
https://etics.esl.eng.it/etics-gui/
Could anyone check it, please? Roberto Cirillo

03:53 PM Task #87: Make new gCube and D4Science wiki available only on https

The ssl certificates are in place. To enable ssl the needed steps are:
Set
~~~
http_ssl_enabled
~~~
to *True*
... Andrea Dell'Amico

03:47 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Two mediawiki instances are now deployed on wiki.d4science.org. The root directories are:
~~~
ls -l /var/www/
... Andrea Dell'Amico

03:16 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

The latest stable version has a PPA, here: https://launchpad.net/~couchdb/+archive/ubuntu/stable
Andrea Dell'Amico

03:13 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

The VMs will be: couch{01:03}-d4s.d4science.org.
The same cluster will serve devel and production.
Andrea Dell'Amico

02:17 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

Reference for couchdb can be found here
http://docs.couchdb.org/en/latest/cluster/theory.html Luca Frosini

03:15 PM Task #279 (Closed): Install the Fauxton couchdb interface

On a dedicated machine. Needs node.js.
fauxton-d4s.d4science.org
Andrea Dell'Amico

Jun 18, 2015

04:35 PM Task #272 (In Progress): Enabling Secure Connections to node11.d.d4science.research-infrastructures.eu

Installed apache, mod-proxy, ajp enabled
Now the proxy answer on https://workspace-repository-dev.research-infrast... Tommaso Piccioli

12:32 PM Task #272 (Closed): Enabling Secure Connections to node11.d.d4science.research-infrastructures.eu

Home Library 2.0 needs secure connections to pass Jackrabbit credentials from client to server.
Please, enable secur... Valentina Marioli

12:04 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error

History of "BlueBRIDGE_Part_B_Sec1-3 20150113.docx" in attachment. Valentina Marioli

10:50 AM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error

No I wanted to recover another older backup but unfortunately we don't have a backup before the 31 January.
I've als... Roberto Cirillo

11:37 AM Incident #258: TabMan - the files associated to the resources are downloaded without extension

We cannot assume here that file names always have or always miss extension (I think also it depends on the particular... Fabio Sinibaldi

10:59 AM Incident #258 (In Progress): TabMan - the files associated to the resources are downloaded without extension

If we determine that any resource that reaches the portlet has a name without an extension and a mimetype correct, th... Giancarlo Panichi

11:20 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

@andrea.dellamico as far as I know, we don't have any requirements in this sense. I think the best way is the simples... Luca Frosini

11:17 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Why me? Who is the owner of this activity? I don't have never worked on wiki media... but, of course, if I can help y... Roberto Cirillo

11:03 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

@roberto.cirillo can collaborate with @andrea.dellamico and @tommaso.piccioli for this task and the task #87 Luca Frosini

Jun 17, 2015

12:19 PM Task #87: Make new gCube and D4Science wiki available only on https

Remember that the configuration steps can chagne depending on the number of VMs. See ticket #85 Andrea Dell'Amico

11:46 AM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

Andrea Dell'Amico wrote:
> The two mediawiki instances will run on the same server or there will be two separate VMs... Andrea Dell'Amico

Jun 16, 2015

05:36 PM Task #99 (Closed): run mongoDB as unprivileged user

done on all nodes, al mongodb now running as mongodb user, automatic start and stop script tested. Tommaso Piccioli

03:49 PM Task #259 (In Progress): Ask https certificate for descramble.d4science.org

SSL certificate requested Tommaso Piccioli

12:35 PM Task #259 (Closed): Ask https certificate for descramble.d4science.org

DESCRAMBLE Project to be hosted on the D4Science Infrastructure Massimiliano Assante

01:05 PM Task #262 (Closed): Create new VM for descramble.d4science.org

The VM should be a clone of egip.d4science.org Massimiliano Assante

11:22 AM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

I'm ready for testing CouchDB.
I'm going to read the deployment documentation for production environment to decide w... Luca Frosini

09:59 AM Support #246: Comment editing changes comment "metadata" namely data

My proposal is as follows:
* mark the comment as "edited" and keep the time of the first comment;
* change the but... Leonardo Candela

Jun 15, 2015

11:58 PM Task #110: Create 3 Virtual Machine for developement to host new noSQL Db cluster

Do we have a hint about the couchdb architecture that is to be implemented?
Andrea Dell'Amico

10:11 PM Support #246: Comment editing changes comment "metadata" namely data

I did not completely understand the answer. If the time time is changed and this breaks the discussion thread then we... Pasquale Pagano

10:06 PM Incident #171: Recently updated file for gCubeApps/BlueBridgeProject Folder error

why this activity has been paused? Are you waiting for feedback? Pasquale Pagano

09:32 PM Task #88: Migrate gCube and D4Science WIKI content on new installation

It is not possible to accumulate so much delay on an activity. If the task is not intended to be supported please rea... Pasquale Pagano

06:31 PM Incident #258 (Closed): TabMan - the files associated to the resources are downloaded without extension

After producing an image via StatMan, the resources attached to the table have correct names but they are downloaded ... Gianpaolo Coro

06:21 PM Incident #257 (Closed): TabMan - GIS Legend

When producing a GIS map with TabMan in the production environment, if the column to attach to the map contains numbe... Gianpaolo Coro

02:52 PM Task #176 (In Progress): Configure DSS to support EUDAT-D4Science integration

New document from Cineca: http://eudat.eu/User%20Documentation%20-%20B2STAGE.html
Andrea Dell'Amico

12:36 PM Task #248 (Closed): No mongodb server rotates its logs

Roberto Cirillo

12:36 PM Task #248 (In Progress): No mongodb server rotates its logs

I've enabled the log rotation on all the instances in this way:
From the mongo shell, issue the logRotate command ... Roberto Cirillo

Jun 12, 2015

06:22 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

The two mediawiki instances will run on the same server or there will be two separate VMs?
Andrea Dell'Amico

06:19 PM Task #87 (In Progress): Make new gCube and D4Science wiki available only on https

The SSL configuration is ready to be deployed.
Before switching to ssl it should be better to test if the site works... Andrea Dell'Amico

02:29 PM Task #249 (Closed): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure

Massimiliano Assante

02:28 PM Task #249 (Resolved): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure

Massimiliano Assante

11:03 AM Task #249 (In Progress): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure

Massimiliano Assante

02:27 PM Task #172: Shut down the old d4science Trac instance

Any news?
Andrea Dell'Amico

02:26 PM Task #98 (Closed): MongoDB in production: allow only trusted connections

Andrea Dell'Amico

02:07 PM Task #99: run mongoDB as unprivileged user

This activity has already been done by Tommaso in development environment. I guess Tommaso know the sequence of steps... Roberto Cirillo

01:24 PM Task #99: run mongoDB as unprivileged user

I assume the nodes are:
~~~
node58.p.d4science.research-infrastructures.eu
node67.p.d4science.research-infrastru... Andrea Dell'Amico

11:03 AM Support #246: Comment editing changes comment "metadata" namely data

the time is modified you are right, but that was thought to not make people change their previous pretend to have sai... Massimiliano Assante

10:22 AM Incident #171 (Paused): Recently updated file for gCubeApps/BlueBridgeProject Folder error

Roberto Cirillo

Jun 11, 2015

07:28 PM Task #176: Configure DSS to support EUDAT-D4Science integration

We had a conference call with Giovanni Morelli, he asked to wait for more precise guidelines. He will send them in th... Andrea Dell'Amico

05:55 PM Task #249: Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure

The portlet for the banner working on Liferay 6.0 is already implemented and deployed on social.isti.cnr.it, I am goi... Massimiliano Assante

05:51 PM Task #249 (Closed): Add Cookies Policy and Cookies Banner to Portals served by the Infrastructure

In particular the Cookies Policy should be added to:
* services.d4science.org
* i-marine.d4science.org
* egip.d4... Massimiliano Assante

05:37 PM Task #248 (Closed): No mongodb server rotates its logs

All the mongodb instances never rotate their log files. The production cluster log files are over 1GB on every node.
Andrea Dell'Amico

04:29 PM Task #98 (Feedback): MongoDB in production: allow only trusted connections

The iptables rules are now active.
Andrea Dell'Amico

03:43 PM Task #98: MongoDB in production: allow only trusted connections

Yes Andrea. Please, include all these network. Roberto Cirillo

03:35 PM Task #98 (In Progress): MongoDB in production: allow only trusted connections

I did not found any connections from .tw hosts, but I composed a list that includes more that what initially asked:
... Andrea Dell'Amico

03:51 PM Support #246 (Closed): Comment editing changes comment "metadata" namely data

The semantic of the edit is quite questionable since I'm allowed to modify my comment yet:
* the comment time is mod... Leonardo Candela

03:11 PM Incident #245: When an invite is performed more than once the button invite disappears and only Close is available

Ready To Release Massimiliano Assante

03:11 PM Incident #245 (Closed): When an invite is performed more than once the button invite disappears and only Close is available

Massimiliano Assante

03:10 PM Incident #245 (Closed): When an invite is performed more than once the button invite disappears and only Close is available

Massimiliano Assante

Jun 10, 2015

05:07 PM Task #98: MongoDB in production: allow only trusted connections

I've found some networks recently used to protect another service on node21.p.d4science.research-infrastructures.eu:
... Andrea Dell'Amico

04:35 PM Support #238 (Rejected): The nagios check 'gcube search' goes often in critical state

Andrea Dell'Amico

04:35 PM Support #238: The nagios check 'gcube search' goes often in critical state

then the ticket can be closed for me. Massimiliano Assante

04:07 PM Support #238: The nagios check 'gcube search' goes often in critical state

It's working correctly since the start of the month, but it flipped a lot in May.
When if fails it's always becaus... Andrea Dell'Amico

02:04 PM Support #238: The nagios check 'gcube search' goes often in critical state

okay, clear now.
Is the second (search) failing now? It should not because if I click on http://portal.i-marine.d4sc... Massimiliano Assante

01:00 PM Support #238: The nagios check 'gcube search' goes often in critical state

I attach the two scripts to clarify.
Andrea Dell'Amico

12:55 PM Support #238: The nagios check 'gcube search' goes often in critical state

Sorry, I just noted that the formatting lost a part of the script. The line
~~~
wget http://$1/images/report/xml ... Andrea Dell'Amico

12:47 PM Support #238: The nagios check 'gcube search' goes often in critical state

If my Analysis is right you may need to correct the Nagios check Massimiliano Assante

12:44 PM Support #238: The nagios check 'gcube search' goes often in critical state

I think this check is messy, it seems mixing the check on the Images Servlet serving the iOS and Android app AppliFis... Massimiliano Assante

12:21 PM Task #208: Prepare and process Indian Ocean Tuna Commission catch statistics

In this ticket we report a process for catch statistics having the following aims:
1. producing the trends of the ... Gianpaolo Coro

11:26 AM Task #117 (Closed): Execute FAO MSY on the complete FAO Dataset

The results have been sent to Yimin Ye of FAO. Gianpaolo Coro

Jun 09, 2015

05:11 PM Task #100: Increase ram Memory on IS-Collector services in production

It needs to be done during the next downtime.
Andrea Dell'Amico

05:09 PM Task #85: Deploy wikimedia on wiki.gcube-system.org and wiki.d4science.org

It seems that we only need to ask for the wiki backups.
Tommaso is going to email the Greeks.
After that we will ... Andrea Dell'Amico

01:16 PM Incident #232 (Closed): node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

The iptables rules are active. Andrea Dell'Amico

12:42 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

No it is a feature of ehcache that is not being exploited. Searchsystem's ehcache does not talk with other service in... John Gerbesiotis

12:37 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

John Gerbesiotis wrote:
> Yes searchsystem uses ehcache and the default port of ehcache is 4446.
And that port is... Andrea Dell'Amico

12:26 PM Incident #232 (In Progress): node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

Andrea, do you want to add an iptables rule for this port? Roberto Cirillo

12:24 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

I think we can close the ticket now Roberto Cirillo

12:21 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

Yes searchsystem uses ehcache and the default port of ehcache is 4446. John Gerbesiotis

Jun 08, 2015

06:31 PM Support #238 (Rejected): The nagios check 'gcube search' goes often in critical state

The "Gcube search" nagios check on portal.i-marine.d4science.org is often in critical state. The script source code i... Andrea Dell'Amico

06:19 PM Task #213 (Closed): Create a new machine to host the mongodb server used by the accounting service

The nagios checks are active.
Andrea Dell'Amico

06:16 PM Support #233 (Closed): node65.p.d4science.research-infrastructures.eu increase memory RAM

Roberto Cirillo

06:15 PM Support #233: node65.p.d4science.research-infrastructures.eu increase memory RAM

The VM and the IS-Registry service have been restarted succesfully Roberto Cirillo

12:31 PM Support #233: node65.p.d4science.research-infrastructures.eu increase memory RAM

I've also increased the heap size. We could restart the VM today at 18:10 CEST Roberto Cirillo

12:05 PM Support #233 (In Progress): node65.p.d4science.research-infrastructures.eu increase memory RAM

I've just increased the available RAM in the xen configuration file for the machine. A shutdown is needed, let me kn... Andrea Dell'Amico

10:23 AM Support #233 (Closed): node65.p.d4science.research-infrastructures.eu increase memory RAM

The IS-Registry service hosted on node65.p.d4science.research-infrastructures.eu has memory problems. it need to incr... Roberto Cirillo

06:02 PM Support #229 (Closed): Create a new virtual machine to host the ic-proxy webapp managed by smartgears

Andrea Dell'Amico

04:44 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

I've notice on node51.p there are the ehcache jars. I don't know how the ehcache is configured but I've seen that a k... Roberto Cirillo

04:26 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

I suggest limiting 4446 to subnet only. John Gerbesiotis

04:23 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

Port 8009 is now closed. What's worrying me is udp 4446, it's opened by one of the tomcat webapps but I don't know if... Andrea Dell'Amico

04:15 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

Well, search services should be publicly available for REST APIs also, as such, 8080 should be public at least. We co... John Gerbesiotis

04:03 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

as John said, for this VM I think is better to limit access to our subnet. The services hosted on node51.p have to ... Roberto Cirillo

12:49 PM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

Searchsystem service communicates with elasticsearch, which is on another vm and with pottal.
To my knowledge, ela... John Gerbesiotis

11:52 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

I don't know this. The d4science services hosted on this VM are related to an elastic search cluster and, maybe, this... Roberto Cirillo

11:38 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

It surely needs to be closed.
The ajp port is always of no use on our systems, because we always use the http port... Andrea Dell'Amico

11:34 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

If there isn't an apache frontend on this host, I think is better to disable the 8009 port in the server.xml file. I... Roberto Cirillo

11:04 AM Incident #232: node51.p.d4science.research-infrastructures.eu webapp unresponsive. The ajp port is open with connections from China

On node51.p (pre production host) there are the following services:
- executionengineservice-search
- searchsystems... Roberto Cirillo