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Task #8895
closed
Reinstall dataminer[1:2]-d-d4s.d4science.org with Ubuntu 14.04
Added by Andrea Dell'Amico about 8 years ago. Updated about 8 years ago.
Status:
Closed
Priority:
Normal
Assignee:
_InfraScience Systems Engineer
Category:
System Application
Target version:
Start date:
Jun 09, 2017
Due date:
% Done:
100%
Estimated time:
Infrastructure:
Development
Description
And the dev version of dataminer, with the separate algorithms repository.
Updated by Andrea Dell'Amico about 8 years ago
- Status changed from New to In Progress
- % Done changed from 0 to 70
@tommaso.piccioli@isti.cnr.it rebuilt the VMs.
The provisioning is running.
Updated by Andrea Dell'Amico about 8 years ago
- Status changed from In Progress to Feedback
- % Done changed from 70 to 90
Configured to run on the scopes
/gcube/devNext/NextNext, /gcube/devNext, /gcube/devsec, /gcube/devsec/devVre
As requested.
data-transfer and whn-manager fail to deploy with the same exception:
javax.servlet.ServletException: cannot manage application @ /whn-manager (see cause)
at org.gcube.smartgears.Bootstrap.onStartup(Bootstrap.java:71)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5493)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:1073)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1857)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NoClassDefFoundError: Could not initialize class org.gcube.common.resources.gcore.utils.Utils
at org.gcube.common.resources.gcore.common.AnyWrapper.<init>(AnyWrapper.java:18)
at org.gcube.common.resources.gcore.GCoreEndpoint$Profile$SpecificData.<init>(GCoreEndpoint.java:372)
at org.gcube.common.resources.gcore.GCoreEndpoint$Profile.<init>(GCoreEndpoint.java:92)
at org.gcube.common.resources.gcore.GCoreEndpoint.<init>(GCoreEndpoint.java:43)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.create(ProfileManager.java:228)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.loadOrCreateProfile(ProfileManager.java:219)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.activated(ProfileManager.java:89)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.onStart(ProfileManager.java:72)
at org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler.onEvent(ApplicationLifecycleHandler.java:42)
at org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler.onEvent(ApplicationLifecycleHandler.java:18)
at org.gcube.smartgears.handlers.Pipeline.forward(Pipeline.java:65)
at org.gcube.smartgears.managers.ApplicationManager.start(ApplicationManager.java:273)
at org.gcube.smartgears.managers.ApplicationManager.start(ApplicationManager.java:120)
at org.gcube.smartgears.Bootstrap.onStartup(Bootstrap.java:61)
... 12 more
While wps fails to deploy with the following exception:
javax.servlet.ServletException: cannot manage application @ /wps (see cause)
at org.gcube.smartgears.Bootstrap.onStartup(Bootstrap.java:71)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5493)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:901)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:877)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:632)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:670)
at org.apache.catalina.startup.HostConfig$DeployDescriptor.run(HostConfig.java:1839)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NoClassDefFoundError: org/w3c/dom/ElementTraversal
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at org.apache.catalina.loader.WebappClassLoader.findClassInternal(WebappClassLoader.java:2966)
at org.apache.catalina.loader.WebappClassLoader.findClass(WebappClassLoader.java:1209)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1689)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1570)
at org.apache.xerces.jaxp.DocumentBuilderImpl.newDocument(Unknown Source)
at org.gcube.common.resources.gcore.utils.Utils.<clinit>(Utils.java:33)
at org.gcube.common.resources.gcore.common.AnyWrapper.<init>(AnyWrapper.java:18)
at org.gcube.common.resources.gcore.GCoreEndpoint$Profile$SpecificData.<init>(GCoreEndpoint.java:372)
at org.gcube.common.resources.gcore.GCoreEndpoint$Profile.<init>(GCoreEndpoint.java:92)
at org.gcube.common.resources.gcore.GCoreEndpoint.<init>(GCoreEndpoint.java:43)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.create(ProfileManager.java:228)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.loadOrCreateProfile(ProfileManager.java:219)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.activated(ProfileManager.java:89)
at org.gcube.smartgears.handlers.application.lifecycle.ProfileManager.onStart(ProfileManager.java:72)
at org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler.onEvent(ApplicationLifecycleHandler.java:42)
at org.gcube.smartgears.handlers.application.ApplicationLifecycleHandler.onEvent(ApplicationLifecycleHandler.java:18)
at org.gcube.smartgears.handlers.Pipeline.forward(Pipeline.java:65)
at org.gcube.smartgears.managers.ApplicationManager.start(ApplicationManager.java:273)
at org.gcube.smartgears.managers.ApplicationManager.start(ApplicationManager.java:120)
at org.gcube.smartgears.Bootstrap.onStartup(Bootstrap.java:61)
... 12 more
Caused by: java.lang.ClassNotFoundException: org.w3c.dom.ElementTraversal
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1719)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1570)
... 35 more
Updated by Lucio Lelii about 8 years ago
this is a known problem. The wps carries a xerces version that is not compatible with the one in the jre. For now I have fixed it replacing the xerces and xml-api jars manually. I will fix it in the next days in the WPS war.
Updated by Andrea Dell'Amico about 8 years ago
- Status changed from Feedback to Closed
- % Done changed from 90 to 100
OK
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