D4Science Infrastructure

Please, refer to the FAQs, because this is a known issue: https://wiki.gcube-system.org/gcube/Statistical_Algorithms_Importer:_FAQ

Thanks for the answer. However, the name of the output seems fine. Here are the last lines of the script:

setwd(working_directory_init)
zip_namefile_random <- paste("outputPlot","",Sys.time(),".zip ",sep="")
zip_namefile <- zip_namefile_random
zip_namefile <- sub(pattern = ":", replacement = "-", x = zip_namefile)
zip_namefile <- sub(pattern = ":", replacement = "-", x = zip_namefile)
zip_namefile <- sub(pattern = " ", replacement = "", x = zip_namefile)
zip(zip_namefile, files=c(indicator), flags= "-r9X", extras = "",zip = Sys.getenv("R_ZIPCMD", "zip"))

The switch of the working directory makes the code prone to errors. Please, try to do the following to understand what's happening:

1 - add a cat() instruction to log the full path of the produced file and log a check of existence for the file in working_directory_init/zip_namefile
2 - add a erroneous command at the end of the code to generate an error
3 - download and read the logs after the execution of the algorithm

As a general rule, you should generate an error if the file was not produced by the algorithm due to some error in the execution.
If you cannot understand the issue from the log, please share the SAI folder with me. I guess the issue could be in the indicator variable.

Sorry Paul, I don't see a log containing the full path of the produced file. I see only checks that a certain line of code has been reached.
In summary, I think the issue is that either the zip file is not really created or the path where it has been created is wrong (not really the initial path).
You should check and display this information in the logs.
The issue in sharing the folder with me is that perhaps you are working in a sub-folder of a folder that is already shared with me. Could you tell me the path of your project, please?

The folder is "Tuna_Atlas" and the subfolder is "catches_by_gear"

Great guys!