D4science

Mar 08, 2019

04:08 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

In example here the iso3 country code for the authority is still missing http://data.d4science.org/ctlg/GRSF_Admin/f8... Aureliano Gentile

03:48 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Thanks, I trust that fix is applied to all records and future records generation Aureliano Gentile

03:41 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

You are right!
Just updated it. Yannis Marketakis

02:04 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

With many thanks for this work.
I see a strange "-" following the authority:NAT:HND in the semantic identifier of t... Aureliano Gentile

11:23 AM StocksAndFisheriesKB Bug #13250 (Feedback): Honduran management organization acronym not appearing

Both records (the legacy and the GRSF one) have been updated. Yannis Marketakis

11:18 AM D4Science Infrastructure Task #12703 (Closed): Public pages visualised by data miner services and proxies

Giancarlo Panichi

11:14 AM StocksAndFisheriesKB Bug #13347 (Closed): Cannot update or publish legacy records

It works as expected.
Thanks @luca.frosini@isti.cnr.it Yannis Marketakis

10:51 AM StocksAndFisheriesKB Bug #13347 (Feedback): Cannot update or publish legacy records

@marketak@ics.forth.gr the patched service is available. Luca Frosini

Mar 07, 2019

02:44 PM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

The service has been patched. We have to wait for ETICS build to update the service.
I'm reopening the upgrade ticket. Luca Frosini

12:35 PM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

Yes, these fields (as well as the refers_to) are mandatory for GRSF records Yannis Marketakis

11:01 AM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

Summarizing:
traceability_flag and status are not mandatory for legacy records. I'll not check for them.
Do I h... Luca Frosini

10:57 AM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

The fields traceability_flag and status are optional for legacy records so remove them.
The field short_name is OK. Yannis Marketakis

10:51 AM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

Hi @marketak@ics.forth.gr
thanks for your feedback.
apart refers_to, the code performs the following checks:
... Luca Frosini

10:25 AM StocksAndFisheriesKB Bug #13347 (In Progress): Cannot update or publish legacy records

@luca.frosini@isti.cnr.it thanks for the update.
I am facing a similar issue. Now it fails because it is missing t... Yannis Marketakis

10:46 AM StocksAndFisheriesKB Bug #16223: Duplicated data in Abundance level time series

@aureliano.gentile@fao.org I cannot find the errors you mentioned.
Taking for example line 9 from the XLS I see tha... Yannis Marketakis

Mar 05, 2019

04:46 PM StocksAndFisheriesKB Bug #13347: Cannot update or publish legacy records

@marketak@ics.forth.gr let me know if it works for you. Luca Frosini

04:45 PM StocksAndFisheriesKB Bug #13347 (Closed): Cannot update or publish legacy records

The patched service has been deployed Luca Frosini

Mar 04, 2019

05:03 PM StocksAndFisheriesKB Bug #16223 (Closed): Duplicated data in Abundance level time series

Similarly to ticket https://support.d4science.org/issues/13300 (Duplicated data in Fishing pressure time series), RAM... Aureliano Gentile

01:00 PM D4Science Infrastructure Task #13283 (Closed): PERFORMFISH_DATA_VALIDATOR_V2 fails on garr dataminer instance

Gianpaolo Coro

Feb 28, 2019

05:05 PM D4Science Infrastructure VRE #12959 (Released): EOSC Pilot VisualMedia VRE

Massimiliano Assante

02:33 PM ISTI Open Access Feature #12662 (In Progress): Cater for hosting publications on ISTI premises and maching them available

The FTP is up and running at http://ftp.openportal.isti.cnr.it/
It was agreed that the open access version of the ... Leonardo Candela

Feb 27, 2019

02:37 PM ISTI Open Access Support #16178 (Closed): Joomla Security Update

Andrea Dell'Amico

01:23 PM ISTI Open Access Support #16178 (Feedback): Joomla Security Update

Done. The second configuration entry cannot be applied to our apache server, it works with apache versions newer that... Andrea Dell'Amico

01:17 PM ISTI Open Access Support #16178 (In Progress): Joomla Security Update

Andrea Dell'Amico

12:46 PM ISTI Open Access Support #16178 (Closed): Joomla Security Update

Message after the last Joomla update:
~~~
.htaccess & web.config security Update
Since version 3.9.3
Since Jo... Michele Artini

11:33 AM StocksAndFisheriesKB Bug #13334: FS type of record harvesting logic

Hi Merul, could you please check Susana's request?
Thank you! Marina Mendes

09:45 AM StocksAndFisheriesKB Bug #13347 (In Progress): Cannot update or publish legacy records

Luca Frosini

Feb 26, 2019

05:08 PM ISTI Open Access Support #16161 (Closed): FTP

Andrea Dell'Amico

05:04 PM ISTI Open Access Support #16161: FTP

Ok Andrea, perfetto. Adesso entro e anche le credenziali non mi hanno dato problemi.
Grazie, ciao
Silvia Anonymous

03:03 PM ISTI Open Access Support #16161 (Feedback): FTP

Puoi provare adesso? Andrea Dell'Amico

03:00 PM ISTI Open Access Support #16161 (In Progress): FTP

Nei dati che hai indicato c'è tutto quel che serve. Andrea Dell'Amico

02:59 PM ISTI Open Access Support #16161 (Closed): FTP

Ciao Andrea,
noi non entriamo sul sito FTP, probabilmente perchè siamo sulla sottorete di area. Che informazioni ti ... Anonymous

Feb 24, 2019

12:42 PM D4Science Infrastructure Task #12608 (Closed): Wiki: Update dataminer mandatory resources

Pasquale Pagano

12:36 PM D4Science Infrastructure Task #5819 (Rejected): Modify use-case functions as e-infrastructure services

Pasquale Pagano

Feb 22, 2019

05:18 PM D4Science Infrastructure Task #8280 (Closed): Update geonetwork installation

Preprod is equipped with GN 3.2 hosted on a SmartGear container as tracked here #12429 Fabio Sinibaldi

04:45 PM ISTI Open Access Feature #11601 (Closed): Migrate the OpenPortal services to production machines

Tommaso Piccioli

04:44 PM ISTI Open Access Feature #13100 (Closed): Switch off demo.openportal.d4science.org and node0-d-puma.d4science.org

> @tommaso.piccioli@isti.cnr.it shut them down, nobody is interested in them anymore.
Done
Tommaso Piccioli

Feb 20, 2019

04:18 PM StocksAndFisheriesKB Support #9283: Enquiry on GRSF merging

ISSUE on area codes resolutions Aureliano Gentile

02:17 PM D4Science Infrastructure Upgrade #13224 (Completed): D4Science Infrastructure Upgrade to gCube 4.13.1

Roberto Cirillo

01:32 PM D4Science Infrastructure Upgrade #13238 (Completed): FARM VO upgrade to gCube 4.13.1

Kostas Kakaletris

01:31 PM D4Science Infrastructure Upgrade #13239 (Completed): gCubeApps VO upgrade to gCube 4.13.1

Kostas Kakaletris

01:31 PM D4Science Infrastructure Upgrade #13239 (In Progress): gCubeApps VO upgrade to gCube 4.13.1

Kostas Kakaletris

11:47 AM D4Science Infrastructure Upgrade #13237 (Completed): D4Research VO upgrade to gCube 4.13.1

Kostas Kakaletris

Feb 19, 2019

11:07 AM D4Science Infrastructure Task #12310 (Closed): is-exporter.d4science.org contains wrong plugin

I'm going to close this ticket giving that the playbook will be changed for other reasons Luca Frosini

Feb 18, 2019

03:44 PM D4Science Infrastructure Task #2679 (Closed): Reinforce Redmine "forgot password" facility

Luca Frosini

03:39 PM D4Science Infrastructure Task #5757 (Closed): Configure GeoNetwork OAI-PMH

This ticket is rather old. I'm going to close it. Luca Frosini

12:54 PM D4Science Infrastructure Task #9958 (Rejected): Investigate the difference between pre-production and production infrastructures

Pasquale Pagano

12:54 PM D4Science Infrastructure Task #8654 (Rejected): Remove VRE Folder D4Research-OpenIt from JCR Repo and storage

Pasquale Pagano

12:54 PM D4Science Infrastructure Task #8210 (Rejected): HL REST API upload: overwrite the file if a file with the same name already exists

Pasquale Pagano

12:54 PM D4Science Infrastructure Task #7574 (Rejected): HL: improve Concurrent uploads

Pasquale Pagano

12:53 PM D4Science Infrastructure Task #4206 (Rejected): Testing backup and recovery in Jackrabbit

Pasquale Pagano

12:53 PM D4Science Infrastructure Task #9570 (Rejected): Metadata information not correctly reported to SAI

Pasquale Pagano

12:50 PM D4Science Infrastructure Task #1984 (Rejected): Reconsider the Experiencing page on the D4Science website

Pasquale Pagano

12:49 PM D4Science Infrastructure Task #5821 (Closed): Prototype fmle_BB()

Pasquale Pagano

12:04 PM D4Science Infrastructure Task #13346 (Closed): common-authorization library: release the new 2.1.4 version to gCube Staging repository

done Lucio Lelii

10:40 AM D4Science Infrastructure Task #13346 (Closed): common-authorization library: release the new 2.1.4 version to gCube Staging repository

I see that you have deployed the new common-authorization version just in gcube-snapshot repository but you haven't u... Roberto Cirillo

10:54 AM D4Science Infrastructure Task #13158: Dismiss SmartArea VO

We should also consider that in the SMAR_Camera VRE Folder there is quite a lot of storage occupied by the photo of t... Massimiliano Assante

10:45 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

There's an issue with the updating of the legacy records (the ones coming from FishSource). I've opened a ticket assi... Yannis Marketakis

10:43 AM StocksAndFisheriesKB Bug #13347 (Closed): Cannot update or publish legacy records

I'm facing the following error when trying to publish or update legacy records.
~~~
2019-02-18 11:36:02 ERROR Gr... Yannis Marketakis

Feb 17, 2019

01:13 PM D4Science Infrastructure Task #13333: Upgrade orientdb dev cluster to 3.0.X version

Luca Frosini wrote:
> Unfortunately, hazelcast encryption is now available only for enterprise users
>
> @andrea.... Andrea Dell'Amico

Feb 15, 2019

04:43 PM D4Science Infrastructure Task #13333 (Closed): Upgrade orientdb dev cluster to 3.0.X version

The dev cluster is up and running now. Luca Frosini

03:17 PM D4Science Infrastructure Task #13333: Upgrade orientdb dev cluster to 3.0.X version

Unfortunately, hazelcast encryption is now available only for enterprise users
@andrea.dellamico@isti.cnr.it is th... Luca Frosini

04:41 PM StocksAndFisheriesKB Bug #13301: Missing catches data in RAM time series

Thanks Yannis.
As you can see in the excel file attached in this ticket (i.e. cell D21): GRSF has 97 and RAM has 170... Aureliano Gentile

11:51 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

OK.
I just checked why the country code is missing and I found out that this type of information was null, by the... Yannis Marketakis

11:37 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

1) the semantic identifier has to be filled with the following logic **authority:NAT:<ISO3code of the country to whic... Aureliano Gentile

11:06 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

Aureliano, your recommendation is not clear to me.
Do you propose adding the acronym of the acronym of the manageme... Yannis Marketakis

11:31 AM D4Science Infrastructure Task #11429 (Closed): Upgrade GS development/pre-production instances

Fabio Sinibaldi

10:35 AM StocksAndFisheriesKB Bug #13300: Duplicated data in Fishing pressure time series

I noticed that in the KB we had two values (with different precision each one).
Since we haven't updated the GRSF KB... Yannis Marketakis

Feb 14, 2019

06:12 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

As per TWG3 workshop on GRSF, it decided to limit the identifier at national level simply by indicating to which coun... Aureliano Gentile

06:02 PM D4Science Infrastructure Task #13333: Upgrade orientdb dev cluster to 3.0.X version

It seems working now.
Thanks a lot. Luca Frosini

05:38 PM D4Science Infrastructure Task #13333: Upgrade orientdb dev cluster to 3.0.X version

Luca Frosini wrote:
> ~~~
> TASK [../../library/roles/nagios : Install the global nrpe commands file] ***********... Andrea Dell'Amico

05:29 PM D4Science Infrastructure Task #13333: Upgrade orientdb dev cluster to 3.0.X version

@andrea.dellamico@isti.cnr.it I'm experiencing a lot of issues to properly run the new version of orientdb because of... Luca Frosini

12:47 PM D4Science Infrastructure Task #13333 (Closed): Upgrade orientdb dev cluster to 3.0.X version

Luca Frosini

05:29 PM StocksAndFisheriesKB Bug #13300: Duplicated data in Fishing pressure time series

With many thanks, appreciated.
I checked the above example and it is fixed. I am going to submit the list of updates... Aureliano Gentile

08:49 AM StocksAndFisheriesKB Bug #13300 (Closed): Duplicated data in Fishing pressure time series

The issue has been resolved.
In total, I've updated 119 GRSF stock records.
Since some of them have been approved,... Yannis Marketakis

03:10 PM StocksAndFisheriesKB Bug #13334 (Closed): FS type of record harvesting logic

We have identified that FishSource assessment unit records that are nested under stocks are not being harvested into ... Susana Segurado

12:51 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

One more that should be an assessment unit (this time source is just FishSource): http://data.d4science.org/ctlg/GRSF... Susana Segurado

12:44 PM StocksAndFisheriesKB Bug #13289 (Feedback): biological stock being recognized as a marine resource

We have found another record that is an assessment unit in FishSource but a marine resource in GRSF: http://data.d4sc... Susana Segurado

12:14 PM D4Science Infrastructure Support #12508: Access logs for SDILab geonetwork

Ok, at some point, I think that we need to clean the DB, and start with an empty catalogue, because at some point som... Emmanuel Blondel

11:55 AM D4Science Infrastructure Support #12508: Access logs for SDILab geonetwork

Hi Emmanuel,
the Select statement returned the following row (column names in first line), so I guess this part of... Fabio Sinibaldi

Feb 13, 2019

04:21 PM StocksAndFisheriesKB Bug #13289 (Closed): biological stock being recognized as a marine resource

Changed the type of 130 records to Assessment Unit.
The URLs of the records that have been updated is attached. Yannis Marketakis

11:43 AM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

I found that the same issue occurs for many fishery records (more than 1000).
Some indicative ones are:
* http:... Yannis Marketakis

10:56 AM D4Science Infrastructure Incident #13326: Shared Folder OceanographyCourse not accessible from Workspace portlet

Massimiliano Assante wrote:
> The files in the folder are accessible with the courses portlet (https://bluebridge.d4... Francesco Mangiacrapa

10:28 AM D4Science Infrastructure Incident #13326: Shared Folder OceanographyCourse not accessible from Workspace portlet

The files in the folder are accessible with the courses portlet (https://bluebridge.d4science.org/group/onlineoceanog... Massimiliano Assante

09:01 AM D4Science Infrastructure Incident #13326: Shared Folder OceanographyCourse not accessible from Workspace portlet

If it regards only my user it is not a big deal. If it affects every user in the group than we have a big issue becau... Massimiliano Assante

Feb 12, 2019

05:42 PM D4Science Infrastructure Incident #13326: Shared Folder OceanographyCourse not accessible from Workspace portlet

it seems that the acl are not assigned and since the sharing and usharing is still done via HL I have to check that l... Lucio Lelii

04:49 PM D4Science Infrastructure Incident #13326 (In Progress): Shared Folder OceanographyCourse not accessible from Workspace portlet

Francesco Mangiacrapa

04:09 PM D4Science Infrastructure Incident #13326 (Closed): Shared Folder OceanographyCourse not accessible from Workspace portlet

When I click in the Workspace tree on the folder below i get "Error on getting items for grid. Try again"
Folder... Massimiliano Assante

01:59 PM StocksAndFisheriesKB Bug #13250 (In Progress): Honduran management organization acronym not appearing

I see that the acronym of the management entity has been added correctly for the legacy record in GRSF_Admin VRE http... Yannis Marketakis

01:57 PM StocksAndFisheriesKB Bug #13289 (In Progress): biological stock being recognized as a marine resource

The type of a stock record is assigned after they are harvested and transformed. Whenever a stock assessment is condu... Yannis Marketakis

12:50 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

Same for http://data.d4science.org/ctlg/GRSF_Admin/acf5f25a-29d0-3d47-a69b-f624eba5de77
and http://data.d4science.... Susana Segurado

Feb 11, 2019

03:57 PM D4Science Infrastructure Support #12508: Access logs for SDILab geonetwork

Hello @sinibaldi sorry to come back so late on that, but this was very low priority on my agenda. Would it be possibl... Emmanuel Blondel

03:43 PM StocksAndFisheriesKB Bug #13300 (In Progress): Duplicated data in Fishing pressure time series

I see that the number of fishing pressure values of the GRSF record (http://data.d4science.org/ctlg/GRSF_Admin/160252... Yannis Marketakis

03:30 PM StocksAndFisheriesKB Bug #13301: Missing catches data in RAM time series

@aureliano.gentile@fao.org I do not understand the issue here.
In fact, I see that the GRSF record has 97 values ... Yannis Marketakis

12:25 PM StocksAndFisheriesKB Bug #13250: Honduran management organization acronym not appearing

The API is exporting the organisation correctly: ... Merul Patel

12:22 PM StocksAndFisheriesKB Bug #13289: biological stock being recognized as a marine resource

FishSource returns this stock as a *Stock*. Yannis please could you look into this. Extract from API below:... Merul Patel

10:59 AM D4Science Infrastructure Upgrade #13239 (Planned): gCubeApps VO upgrade to gCube 4.13.1

Roberto Cirillo

10:59 AM D4Science Infrastructure Upgrade #13238 (In Progress): FARM VO upgrade to gCube 4.13.1

Roberto Cirillo

10:58 AM D4Science Infrastructure Upgrade #13238 (Planned): FARM VO upgrade to gCube 4.13.1

Roberto Cirillo

10:57 AM D4Science Infrastructure Upgrade #13225 (Completed): D4Science Root VO upgrade to gCube 4.13.1

Roberto Cirillo

10:55 AM D4Science Infrastructure Upgrade #13224 (In Progress): D4Science Infrastructure Upgrade to gCube 4.13.1

Roberto Cirillo

10:55 AM D4Science Infrastructure Upgrade #13224 (Planned): D4Science Infrastructure Upgrade to gCube 4.13.1

Roberto Cirillo

Feb 08, 2019

05:20 PM D4Science Infrastructure VRE #13312 (Released): ARIADNEplus_Mappings VRE

VRE available for registered users at https://ariadne.d4science.org/group/ariadneplus_mappings Massimiliano Assante

05:18 PM D4Science Infrastructure VRE #13312 (Available): ARIADNEplus_Mappings VRE

The VRE is ready, I'm now going to invite @minadakn@ics.forth.gr to check if everything works as expected. Massimiliano Assante

02:28 PM D4Science Infrastructure VRE #13312 (In Progress): ARIADNEplus_Mappings VRE

Massimiliano Assante

02:27 PM D4Science Infrastructure VRE #13312 (Planned): ARIADNEplus_Mappings VRE

Massimiliano Assante

02:27 PM D4Science Infrastructure VRE #13312 (Released): ARIADNEplus_Mappings VRE

ARIADNEplus_Project VRE should be created in the D4OS Virtual Organisation and have the 3M Tool as main service Massimiliano Assante

05:17 PM D4Science Infrastructure Task #13313 (Closed): Add mapping.d4science.org to the new VRE ARIANDNEplus_Mappings

It works as expected now, thank you Massimiliano Assante

05:11 PM D4Science Infrastructure Task #13313: Add mapping.d4science.org to the new VRE ARIANDNEplus_Mappings

The urls specified inside the web.xml have been replaced as suggested by @lucio.lelii@isti.cnr.it
Please could you ... Roberto Cirillo

04:32 PM D4Science Infrastructure Task #13313 (Feedback): Add mapping.d4science.org to the new VRE ARIANDNEplus_Mappings

The service is published properly on both the scopes with the new name.
Please, @massimiliano.assante@isti.cnr.it co... Roberto Cirillo

03:48 PM D4Science Infrastructure Task #13313 (In Progress): Add mapping.d4science.org to the new VRE ARIANDNEplus_Mappings

Roberto Cirillo

03:26 PM D4Science Infrastructure Task #13313 (Closed): Add mapping.d4science.org to the new VRE ARIANDNEplus_Mappings

It's needed to change the container hostname from
~~~
mapping-d-parthenos.d4science.org
~~~
to
~~~
mappin... Roberto Cirillo

12:48 PM D4Science Infrastructure Task #13246 (Closed): Setup New D4Science Gateway ariadne.d4science.org

Massimiliano Assante

10:58 AM D4Science Infrastructure Task #13246: Setup New D4Science Gateway ariadne.d4science.org

due to changes in a related task Massimiliano Assante

12:47 PM D4Science Infrastructure VRE #13281 (Released): ARIADNEplus_Project VRE

Massimiliano Assante

11:52 AM D4Science Infrastructure VRE #13281 (Available): ARIADNEplus_Project VRE

Massimiliano Assante

10:58 AM D4Science Infrastructure VRE #13281 (In Progress): ARIADNEplus_Project VRE

Massimiliano Assante

10:58 AM D4Science Infrastructure VRE #13281 (Planned): ARIADNEplus_Project VRE

Massimiliano Assante

10:56 AM D4Science Infrastructure Task #13248 (Closed): Ariadne Gateway Site creation and Theme

Massimiliano Assante

10:55 AM D4Science Infrastructure Task #13248 (In Progress): Ariadne Gateway Site creation and Theme

Massimiliano Assante

Feb 07, 2019

04:17 PM StocksAndFisheriesKB Bug #13301 (Closed): Missing catches data in RAM time series

In example in this record Hake - Bay of Biscay and Iberian Basin http://data.d4science.org/ctlg/GRSF_Admin/1bbbe48c-... Aureliano Gentile

03:12 PM StocksAndFisheriesKB Bug #13300 (Closed): Duplicated data in Fishing pressure time series

in example in this record Sardine - Northern Spain http://data.d4science.org/ctlg/GRSF/16025239-9b00-3099-9cb5-e4690f... Aureliano Gentile