D4science

Dec 28, 2018

02:54 PM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

Luca Frosini wrote:
> Thanks a lot.
>
> Let me know when you find a solution and what I have to do in the future.... Andrea Dell'Amico

02:36 PM D4Science Infrastructure Task #13087 (Closed): Please upgrade grsf-publisher-ws to latest version

I run the playbook successfully.
About your authentication problems: limiting the run to a selected role it's not e... Andrea Dell'Amico

Dec 27, 2018

06:07 PM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

You must limit the scope of the playbook, as usual: if you run it without specifying any tags it will try to execute ... Andrea Dell'Amico

11:50 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > On the other mongo instances is installed the wrong hook scri... Andrea Dell'Amico

11:35 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Roberto Cirillo wrote:
> After the restart I see the same error on mongo2-d-d4s and mongo4-d-d4s
But mongodb on m... Andrea Dell'Amico

11:34 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

On the other mongo instances is installed the wrong hook script too.
A recap: mongodb does not support a service rel... Andrea Dell'Amico

11:16 AM D4Science Infrastructure Support #13083 (In Progress): mongo2-d-d4s, mongo4-d-d4s: Certificate expired

The certificates were correctly renewed on all the dev mongo instances, Dec 1st. But I see that the restart action is... Andrea Dell'Amico

Dec 21, 2018

04:52 PM ISTI Open Access Feature #11601 (Feedback): Migrate the OpenPortal services to production machines

Andrea Dell'Amico

Dec 20, 2018

07:53 PM ISTI Open Access Feature #13078 (Closed): Put the three openportal servers under backup

The hosts data is listed in the parent task. Andrea Dell'Amico

07:48 PM ISTI Open Access Bug #12670 (Closed): Memory problem

Let's see what happens on the new service, where the PHP frontend runs into its own VM.
Andrea Dell'Amico

07:45 PM ISTI Open Access Feature #12667 (Closed): New joomla portal installation (BETA)

beta is going to be hosted on the same server that hosts production. Andrea Dell'Amico

07:21 PM ISTI Open Access Feature #11601: Migrate the OpenPortal services to production machines

dnet-openportal.isti.cnr.it has been deployed. The dnet application will answer at https://dnet.openportal.isti.cnr.i... Andrea Dell'Amico

Dec 19, 2018

12:14 PM D4Science Infrastructure Task #12384 (Closed): Provide a cronjob for restarting VREModeler service

Andrea Dell'Amico

12:13 PM D4Science Infrastructure Task #12799: Memory problems on ckan-d4s1.d4science.org

@tommaso.piccioli@isti.cnr.it @francesco.mangiacrapa@isti.cnr.it was the RAM amount increased? if not, let's do that.
Andrea Dell'Amico

Dec 14, 2018

05:22 PM ISTI Open Access Feature #11601 (In Progress): Migrate the OpenPortal services to production machines

Michele Artini wrote:
>
> 1. backend.openportal.isti.cnr.it (solr 5.5.x + mongo + mysql)): 4 cpus, 16GB Ram, ~64G... Andrea Dell'Amico

Dec 11, 2018

03:49 PM D4Science Infrastructure Task #12599 (Closed): Is it possible to install rJava on RStudioLab?

Andrea Dell'Amico

Dec 10, 2018

07:23 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

See https://support.d4science.org/projects/aginfraplut/wiki/GCore_based_services for the documentation on how to conf... Andrea Dell'Amico

07:15 PM D4Science Infrastructure Task #12384 (Feedback): Provide a cronjob for restarting VREModeler service

The wiki entry is here: https://support.d4science.org/projects/aginfraplut/wiki/GCore_based_services . I also added a... Andrea Dell'Amico

07:04 PM D4Science Infrastructure Task #12384 (In Progress): Provide a cronjob for restarting VREModeler service

Andrea Dell'Amico

01:18 PM D4Science Infrastructure Incident #12894 (Closed): Update of FSK plugin failed

The plugin is installed everywhere.
Andrea Dell'Amico

01:08 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

The installation of the plugin is ongoing. Andrea Dell'Amico

12:34 PM D4Science Infrastructure Incident #12894 (In Progress): Update of FSK plugin failed

Lars Valentin wrote:
> Hey Andrea,
>
> could you please point me to the parts where you check if any KNIME proces... Andrea Dell'Amico

12:15 PM D4Science Infrastructure Incident #12894 (Feedback): Update of FSK plugin failed

I changed the playbook and the cron job configuration. The plugin installation still fails:
~~~
eclipse.buildId=u... Andrea Dell'Amico

Dec 09, 2018

12:38 PM D4Science Infrastructure Incident #13007: The maven disk is full and a first try to cleanup the space failed

Agree. At this point we should wait for the upgrade to a newer release. We'll try to work it out ASAP. Andrea Dell'Amico

12:36 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

Here is the ansible knime role, anyway. I've not reworked it to supporto multiple knime versions yet.
Andrea Dell'Amico

12:31 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

The daily update is performed by a cron job that runs a shell script:
~~~
#!/bin/bash
RETVAL=
RETVAL_WF=
DATE=... Andrea Dell'Amico

Dec 07, 2018

05:40 PM D4Science Infrastructure VM Creation #12989 (Closed): Please create a VM for new gCat Service

I just added the nagios check too. Andrea Dell'Amico

05:15 PM D4Science Infrastructure VM Creation #12989: Please create a VM for new gCat Service

Luca Frosini wrote:
> @andrea.dellamico@isti.cnr.it I forget to ask to allow gcat.d4science.org host to be able to c... Andrea Dell'Amico

05:08 PM D4Science Infrastructure VM Creation #12989: Please create a VM for new gCat Service

The nagios check can only run GET or POST checks, at least the version that we run right now.
Andrea Dell'Amico

03:43 PM D4Science Infrastructure VM Creation #12989 (Feedback): Please create a VM for new gCat Service

The service is up. Andrea Dell'Amico

04:26 PM D4Science Infrastructure Incident #13007 (In Progress): The maven disk is full and a first try to cleanup the space failed

The file system check did not have any effect. There are ~20GB of free space right now, if I find a way to expand the... Andrea Dell'Amico

03:47 PM D4Science Infrastructure Incident #13007: The maven disk is full and a first try to cleanup the space failed

We brought down the server and I'm running a file system check on the maven data disk, it will take some time.
Andrea Dell'Amico

03:46 PM D4Science Infrastructure Incident #13007 (Closed): The maven disk is full and a first try to cleanup the space failed

@tommaso.piccioli@isti.cnr.it followed the procedure described here: https://support.sonatype.com/hc/en-us/articles... Andrea Dell'Amico

Dec 06, 2018

05:07 PM D4Science Infrastructure Task #12990 (Closed): Thredds: the threddsServlet*.log files are never removed.

Done on all the instances. The log files are now located into `/home/gcube/tomcat/logs/thredds/`
Andrea Dell'Amico

04:41 PM D4Science Infrastructure Task #12990 (In Progress): Thredds: the threddsServlet*.log files are never removed.

Andrea Dell'Amico

03:28 PM D4Science Infrastructure Task #12927 (Closed): Thredds WMS AquaMaps configuration

The templates now reflect the manual changes of the thredds config files.
The mixed content problems cannot be solv... Andrea Dell'Amico

Dec 05, 2018

07:18 PM D4Science Infrastructure Task #12990: Thredds: the threddsServlet*.log files are never removed.

thredds uses log4j, the configuration is `WEB-INF/classes/log4j2.xml` and the `threddsServlet` part misses a `Default... Andrea Dell'Amico

07:17 PM D4Science Infrastructure Task #12990 (Closed): Thredds: the threddsServlet*.log files are never removed.

Also, it puts the logs into the data directory. Better move them into the tomcat logs one.
Andrea Dell'Amico

07:05 PM D4Science Infrastructure Task #12927 (Feedback): Thredds WMS AquaMaps configuration

The changes have been applied.
Andrea Dell'Amico

04:41 PM D4Science Infrastructure Task #12927 (In Progress): Thredds WMS AquaMaps configuration

Andrea Dell'Amico

06:59 PM D4Science Infrastructure VM Creation #12989: Please create a VM for new gCat Service

Please add the vault file with the token into `ansible-playbooks/d4science-ghn-cluster/group_vars/gcat_prod/vault-fil... Andrea Dell'Amico

03:22 PM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service

Nope, the cause must be different. The nagios-related tasks have a `ignore_errors: True` entry.
Andrea Dell'Amico

03:14 PM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service

The correct playbook for the smart excutors is `smartexecutor-services.yml`. They were split some months ago, because... Andrea Dell'Amico

Dec 04, 2018

06:38 PM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service

Yes please. Andrea Dell'Amico

06:33 PM D4Science Infrastructure Task #12599 (Feedback): Is it possible to install rJava on RStudioLab?

Now it's working for me on all the instances I have access to. Any feedback?
Andrea Dell'Amico

03:10 PM D4Science Infrastructure Task #12968 (Rejected): Add the javaIO plugin for Tiff if is missing

We need a different solution. Andrea Dell'Amico

02:26 PM D4Science Infrastructure Task #12968: Add the javaIO plugin for Tiff if is missing

Also, read the latest comments: https://bugs.java.com/bugdatabase/view_bug.do?bug_id=8156745 : not only it's unsuppor... Andrea Dell'Amico

12:44 PM D4Science Infrastructure Task #12968: Add the javaIO plugin for Tiff if is missing

The place should be this one: https://www.oracle.com/technetwork/java/install-jai-imageio-1-0-01-139659.html but ther... Andrea Dell'Amico

12:40 PM D4Science Infrastructure Task #12968: Add the javaIO plugin for Tiff if is missing

That library is so old that I don't find a way to download it...
Andrea Dell'Amico

Nov 30, 2018

09:28 PM D4Science Infrastructure Task #12964 (Closed): logback does not change its configuration at runtime

I added `scanPeriod="60 seconds"` to the logback template in the smartgears playbook.
The change must be provisione... Andrea Dell'Amico

09:25 PM D4Science Infrastructure Task #12964 (In Progress): logback does not change its configuration at runtime

It's a bug, introduced in version 1.1.7 and fixed in 1.1.13. The bug tracking is here: https://jira.qos.ch/browse/LOG... Andrea Dell'Amico

09:22 PM D4Science Infrastructure Task #12964 (Closed): logback does not change its configuration at runtime

It should reload its configuration ad fixed intervals, but it does not.
Andrea Dell'Amico

09:05 PM D4Science Infrastructure VM Creation #11771 (Feedback): Please create a VM having access to prod authorization service

The service has been deployed. I see no errors in the tomcat logs, can you check if it's working?
Andrea Dell'Amico

08:55 PM D4Science Infrastructure Task #12963 (Closed): Routinely restart the ldap service on the replicas

Cron job installed. Andrea Dell'Amico

08:50 PM D4Science Infrastructure Task #12963 (In Progress): Routinely restart the ldap service on the replicas

I'm adding the task that install a cron job to restart the service, at a different hour on the replicas with respect ... Andrea Dell'Amico

06:52 PM D4Science Infrastructure Task #12963 (Closed): Routinely restart the ldap service on the replicas

After some days of uptime, the nagios check starts failing even if the service seems to respond to the local client... Andrea Dell'Amico

06:43 PM D4Science Infrastructure Task #12827 (Closed): Configure CKAN to store .cache files (that are session info) in memory

All the servers have been reconfigured. Andrea Dell'Amico