D4science

Oct 31, 2018

02:50 PM D4Science Infrastructure Task #12614 (Feedback): Need server with joblength 1 to use all 16 cores and a cue system per server.

The dm cluster with queue 1 has been configured on RAKIP_Portal VRE. Please @leonardo.candela@isti.cnr.it could you c... Roberto Cirillo

02:43 PM D4Science Infrastructure Task #12614 (In Progress): Need server with joblength 1 to use all 16 cores and a cue system per server.

Roberto Cirillo

11:17 AM D4Science Infrastructure Task #11821: Ansible: Provide a new role for storageHub webapp

Done. I'm going to test it ASAP. Roberto Cirillo

Oct 30, 2018

06:24 PM D4Science Infrastructure Task #11821 (In Progress): Ansible: Provide a new role for storageHub webapp

Lucio Lelii wrote:
> One thing is missing in the ansible configuration. There is a new parameter in the web.xml file... Roberto Cirillo

06:01 PM D4Science Infrastructure Task #11821 (Closed): Ansible: Provide a new role for storageHub webapp

Roberto Cirillo

05:23 PM D4Science Infrastructure Task #12794: Workspace - Download problem with some file extension

@g.panichi@isti.cnr.it are you referring to a file downloaded by public link? Is it correct?
If it can help, I've ... Roberto Cirillo

12:44 PM D4Science Infrastructure Upgrade #12739 (Completed): /gcube/preprod upgrade to gCube 4.13

Roberto Cirillo

11:42 AM D4Science Infrastructure Task #10954 (Closed): There is no limit to the access log file number

Roberto Cirillo

11:41 AM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

The same cronjob should be added to all the collector instances.
Please could you add it to the following productio... Roberto Cirillo

Oct 29, 2018

10:01 AM D4Science Infrastructure Upgrade #12739 (In Progress): /gcube/preprod upgrade to gCube 4.13

Roberto Cirillo

10:01 AM D4Science Infrastructure Upgrade #12739 (Planned): /gcube/preprod upgrade to gCube 4.13

Roberto Cirillo

Oct 25, 2018

12:18 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

The new VRE has been correctly disposed so I guess it isn't an expired problem.
I'm going to change this ticket to ... Roberto Cirillo

Oct 24, 2018

11:52 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

TestVRE created on FARM, it will expire tomorrow. Now it is present under "deployed VREs" list as expected. Roberto Cirillo

11:41 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

I'm going to create a test VRE on FARM that will expire after one day. In this way I can verify if the new VRE will ... Roberto Cirillo

Oct 23, 2018

05:17 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

I'm not the VREModeler owner and I don't know how it works but my suspect is that the missing VREs are simply expired... Roberto Cirillo

Oct 22, 2018

04:59 PM D4Science Infrastructure Upgrade #12739: /gcube/preprod upgrade to gCube 4.13

**Hosting Nodes**
*WHN to upgrade*
* **(POSTPONED)** data1-d.d4science.net
* **(CNR) DONE** dataminer1-pre.d... Roberto Cirillo

03:44 PM D4Science Infrastructure Task #12527: Undeploy FARM/AquaMaps VRE

I'm trying to remove the GenericResources with SecondaryType: MetadataBrokerXSLT
but I'm not able to do that with re... Roberto Cirillo

03:22 PM D4Science Infrastructure Task #12527: Undeploy FARM/AquaMaps VRE

Accordingly with @fabio.sinibaldi@isti.cnr.it I'm going to open a new ticket for checking if the postgis db used by A... Roberto Cirillo

02:52 PM D4Science Infrastructure Task #12527 (In Progress): Undeploy FARM/AquaMaps VRE

The postGIS resource pointing to aquamapsgeomar is present only on aquamaps VRE so I'm going to drop it and the other... Roberto Cirillo

12:32 PM D4Science Infrastructure Task #12527 (Feedback): Undeploy FARM/AquaMaps VRE

There are some resources deployed only in the aquamaps scope.
Can I definitively remove these resource from the infr... Roberto Cirillo

10:51 AM D4Science Infrastructure Support #12747 (Closed): couchbase08 is not responding

Restarted by @tommaso.piccioli@isti.cnr.it now it seems to be ok Roberto Cirillo

09:49 AM D4Science Infrastructure Support #12747 (Closed): couchbase08 is not responding

All the check nagios are failing. Please could you check? Roberto Cirillo

09:48 AM D4Science Infrastructure Incident #12746 (Closed): geoserver.d4science.org outOfMemory

Roberto Cirillo

09:43 AM D4Science Infrastructure Incident #12746: geoserver.d4science.org outOfMemory

it was running with -Xms3072m -Xmx3072m heap space.
I'm going to restart the service Roberto Cirillo

09:42 AM D4Science Infrastructure Incident #12746 (Closed): geoserver.d4science.org outOfMemory

Roberto Cirillo

Oct 19, 2018

11:03 AM D4Science Infrastructure Upgrade #12739 (Completed): /gcube/preprod upgrade to gCube 4.13

Roberto Cirillo

11:02 AM D4Science Infrastructure Upgrade #12738 (Completed): D4Science Infrastructure Upgrade to gCube 4.13.0

Roberto Cirillo

10:29 AM D4Science Infrastructure Support #12737 (Closed): Social-ISTI- mongoR4-si heartbeat fails from mongoR2-si

The mongodb server mongoR4-si.isti.cnr.it is often restarted because of communication problem with the primary node: ... Roberto Cirillo

Oct 18, 2018

03:41 PM D4Science Infrastructure Task #12444 (Paused): Enable TLS/SSL on the mongodb production cluster

Roberto Cirillo

03:40 PM D4Science Infrastructure Task #12444 (In Progress): Enable TLS/SSL on the mongodb production cluster

The certificates have been already installed on mongodb cluster and mongo volatile area instance. Roberto Cirillo

12:27 PM D4Science Infrastructure Upgrade #12729 (Completed): D4Science Infrastructure Upgrade to gCube 4.12.1

Roberto Cirillo

12:27 PM D4Science Infrastructure Upgrade #12729 (In Progress): D4Science Infrastructure Upgrade to gCube 4.12.1

Roberto Cirillo

12:26 PM D4Science Infrastructure Upgrade #12729 (Planned): D4Science Infrastructure Upgrade to gCube 4.12.1

Roberto Cirillo

12:24 PM D4Science Infrastructure Upgrade #12729 (Completed): D4Science Infrastructure Upgrade to gCube 4.12.1

Roberto Cirillo

Oct 17, 2018

12:55 PM D4Science Infrastructure VM Creation #12592 (Closed): StorageHub in preproduction

Good news. I'm going to close this ticket Roberto Cirillo

10:40 AM D4Science Infrastructure VM Creation #12592 (Feedback): StorageHub in preproduction

Please @lucio.lelii@isti.cnr.it could you check if the service is configured properly now? Roberto Cirillo

10:38 AM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

I've opened the postgres to the new storagehub instance and now it seems to work fine. Roberto Cirillo

12:40 PM D4Science Infrastructure Task #12671 (Feedback): provision of patched org.gcube.spatial-data.geonetwork.3.2.3

Library upgraded on the services above.
Please @fabio.sinibaldi@isti.cnr.it could you check? Roberto Cirillo

12:09 PM D4Science Infrastructure Task #12671 (In Progress): provision of patched org.gcube.spatial-data.geonetwork.3.2.3

Roberto Cirillo

12:08 PM D4Science Infrastructure Task #12671: provision of patched org.gcube.spatial-data.geonetwork.3.2.3

I'm goingo to replace the geonetwork library on the following services:
dataminer
spd,
tabulardata
Roberto Cirillo

11:18 AM D4Science Infrastructure Task #12714 (Rejected): DataMiner - Check svn configuration of dataminer-ghost-d.dev.d4science.org

I'm going to close this ticket since the ghost is just an alias and the dm installation was done manually.
If you ne... Roberto Cirillo

Oct 16, 2018

06:42 PM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

I've pushed right now the new storagehub preproduction files Roberto Cirillo

06:13 PM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

I've launched the playbook but I see the following exception:
~~~
SQLNestedException: Cannot create PoolableConne... Roberto Cirillo

04:02 PM D4Science Infrastructure Task #12714: DataMiner - Check svn configuration of dataminer-ghost-d.dev.d4science.org

The dataminer ghost: dataminer-ghost-d.dev.d4science.org is an ALIAS of dataminer1-devnext and it is not present in t... Roberto Cirillo

12:16 PM D4Science Infrastructure Task #12058: IS-Collector: Restart all the smartgears services with too many open connections to IS-Collector

socialnetworking should be restarted again. I'm going to restart it. Roberto Cirillo

11:42 AM D4Science Infrastructure Task #12705 (Closed): dataminer1-proto: full of twitterMonitor log

Thanks @salvatore.minutoli@iit.cnr.it for your feedback. It's not needed to remove your log from the code since the l... Roberto Cirillo

10:09 AM D4Science Infrastructure Task #12705: dataminer1-proto: full of twitterMonitor log

@salvatore.minutoli@iit.cnr.it do you think it is a normal behavior?
The log is printed in the dataminer instance. Roberto Cirillo

09:58 AM D4Science Infrastructure Task #12705 (Closed): dataminer1-proto: full of twitterMonitor log

Since 27th September, the analysis.log file is full of the following log line:
~~~
2018-09-27 10:21:55,983 [pool-... Roberto Cirillo

11:09 AM D4Science Infrastructure Task #12678 (Closed): Ansible-dataminer: manage parallel computation as parameter in web.xml

The new dataminer app has been installed successfully: The new web.xml is properly managed.
I've explicitly set the... Roberto Cirillo

11:04 AM D4Science Infrastructure Task #12678: Ansible-dataminer: manage parallel computation as parameter in web.xml

The playbook take very long time: about one hour for update a single instance.
Most of the time used for installing ... Roberto Cirillo

10:23 AM D4Science Infrastructure Task #12678 (In Progress): Ansible-dataminer: manage parallel computation as parameter in web.xml

Roberto Cirillo

Oct 15, 2018

04:27 PM D4Science Infrastructure Task #12694 (Feedback): GeoNetwork for AlienAndInvasiveSpecies VRE

added. Please could you check? Roberto Cirillo

04:03 PM D4Science Infrastructure Task #12694 (In Progress): GeoNetwork for AlienAndInvasiveSpecies VRE

Roberto Cirillo

02:57 PM D4Science Infrastructure Task #12678 (Paused): Ansible-dataminer: manage parallel computation as parameter in web.xml

New variable managed. I need to test it in preproduction environment when the new dataminer version (1.5.5) is availa... Roberto Cirillo

02:27 PM D4Science Infrastructure Task #12678 (In Progress): Ansible-dataminer: manage parallel computation as parameter in web.xml

Roberto Cirillo

12:36 PM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

The external storage data disk are specified in the description as usual. Roberto Cirillo

10:49 AM D4Science Infrastructure Task #12682 (Feedback): Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE

Resources created. Please could you enable the view in the VRE and check? Roberto Cirillo

10:36 AM D4Science Infrastructure Task #12682 (In Progress): Add the CKAN Catalogue to the French Tropical Tuna Atlas VRE

Roberto Cirillo

Oct 12, 2018

05:09 PM D4Science Infrastructure Task #12678 (Closed): Ansible-dataminer: manage parallel computation as parameter in web.xml

It's needed to create an ansible task for adding the parallel computation parameter in the web.xml as reported here: ... Roberto Cirillo

03:14 PM D4Science Infrastructure Task #12671 (Paused): provision of patched org.gcube.spatial-data.geonetwork.3.2.3

Roberto Cirillo

02:54 PM D4Science Infrastructure Task #12671 (Feedback): provision of patched org.gcube.spatial-data.geonetwork.3.2.3

The library has been replaced in preprod on the following instances:
~~~
dataminer-ghost-t.pre.d4science.org
dat... Roberto Cirillo

02:46 PM D4Science Infrastructure Task #12671 (In Progress): provision of patched org.gcube.spatial-data.geonetwork.3.2.3

I'm going to replace the geonetwork library first on preproduction dataminer service instance. if it works well, I'm ... Roberto Cirillo

Oct 11, 2018

05:01 PM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

I've notice that the external storage data disk described in the description are not added. Please could you add the ... Roberto Cirillo

11:21 AM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

@lucio.lelii@isti.cnr.it the smartgears_hostname should be the same of homelibrary hostname as done in production or ... Roberto Cirillo

10:22 AM D4Science Infrastructure VM Creation #12592: StorageHub in preproduction

I'm not able to access to storagehub.pre.d4science.net please could you give me access? Roberto Cirillo

09:42 AM D4Science Infrastructure Incident #12655 (Closed): workspace down: postgres filesystem is no more accessible

the postgres db hosted on
~~~
workspace-repository-pg.d4science.org
~~~
is down and if i try to restart it, I... Roberto Cirillo

Oct 10, 2018

04:47 PM D4Science Infrastructure Task #12639 (Closed): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

Roberto Cirillo

12:23 PM D4Science Infrastructure Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

All the instances have been updated. Please @g.panichi@isti.cnr.it could you perform the last check? Roberto Cirillo

11:56 AM D4Science Infrastructure Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

The problem is in the web.xml file that have the old folder inside... I'm going to update the web.xml and restart the... Roberto Cirillo

11:48 AM D4Science Infrastructure Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

the GetCapabilities doesn't work now. I guess because after the restart the dataminer try to use the deleted folder /... Roberto Cirillo

11:09 AM D4Science Infrastructure Task #12639 (Feedback): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

All the instances have been changed and restarted. Please close this ticket if it is ok for you. Roberto Cirillo

10:51 AM D4Science Infrastructure Task #12639: DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

For the moment, I've upgraded only dataminer0-gw-proto.d4science.org. I'm going to change the other instances and res... Roberto Cirillo

10:30 AM D4Science Infrastructure Task #12639 (Feedback): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

For testing, I've modified only dataminer0-gw-proto.d4science.org
Please @g.panichi@isti.cnr.it could you check if... Roberto Cirillo

10:04 AM D4Science Infrastructure Task #12639 (In Progress): DataMiner - Check the configuration of the algorithms for the Proto Generic Workers.

I've never exectuted this kind of task. I hope it works as I expect Roberto Cirillo