D4science

May 22, 2018

11:24 PM D4Science Infrastructure Task #11828 (Closed): Add reference country shapefile to production RDB

Since we don't have admin rights to the RDB production (wecafc) database, we are not able to upload a new reference s... Emmanuel Blondel

09:11 PM D4Science Infrastructure Support #11827 (Closed): Geoserver logs unavailable

Hi,
I cannot access the Geoserver logs nor of the French tuna atlas GS (http://geoserver-french-tunaatlas.d4science.... Paul Taconet

06:15 PM StocksAndFisheriesKB Task #11826 (Closed): Purge all data from GRSF_Admin Catalogue

All data saved on the GRSF_Admin catalogue https://bluebridge.d4science.org/group/grsf_admin/data-catalogue must be p... Francesco Mangiacrapa

05:51 PM D4Science Infrastructure Task #11825 (Closed): Setup New gateway performfish.d4science.net

We need to setup a new gateway on liferay cluster and that would respond to https://performfish.d4science.org
Plea... Massimiliano Assante

10:50 AM D4Science Infrastructure Task #11821: Ansible: Provide a new role for storageHub webapp

Now dev works, I got you while restarting it I suppose, please make it work the preprod scopes as well (preVRE, Dorne) Massimiliano Assante

10:48 AM D4Science Infrastructure Task #11821 (In Progress): Ansible: Provide a new role for storageHub webapp

Wonderful nothing works now in dev https://next.d4science.org/group/next/storage-hub
nor in preprod https://pre.d4... Massimiliano Assante

10:47 AM D4Science Infrastructure Task #11821 (Closed): Ansible: Provide a new role for storageHub webapp

It works Lucio Lelii

10:13 AM D4Science Infrastructure Task #11821 (Feedback): Ansible: Provide a new role for storageHub webapp

PLease @lucio.lelii@isti.cnr.it could you close this ticket if the storagehub works well? Roberto Cirillo

10:12 AM D4Science Infrastructure Task #11821 (In Progress): Ansible: Provide a new role for storageHub webapp

The playbook has been run successfully on dev instance. Roberto Cirillo

10:07 AM D4Science Infrastructure Task #11821 (Closed): Ansible: Provide a new role for storageHub webapp

The new role should be tested on
~~~
workspace-repository-devnext.d4science.org
~~~
running on developmnent... Roberto Cirillo

10:11 AM D4Science Infrastructure Support #11823 (Closed): Interaction R - workspace : function to retrieve Link

I need to retrieve through R the URL of some files that are stored in the WS.
The function "getPublicFileLinkWS" (ht... Paul Taconet

09:59 AM D4Science Infrastructure VM Creation #11045: FrenchTropicalTunaAtlas dedicated GeoServer

Hi,
I cannot access the Geoserver logs (see attached image and file). I need to access them to understand why some o... Paul Taconet

09:58 AM D4Science Infrastructure Upgrade #11813 (In Progress): D4Science Preprod Gateway upgrade to gCube 4.11.1

Massimiliano Assante

08:12 AM StocksAndFisheriesKB Task #11786: GRSF-services-core updates

Thank you all for your answers.
The only pending issue, therefore, is the identification of the catalogue prefix.
W... Yannis Marketakis

May 21, 2018

06:29 PM D4Science Infrastructure Upgrade #11814 (Completed): D4Science Gateways upgrade to gCube 4.11.1

Massimiliano Assante

06:28 PM D4Science Infrastructure Upgrade #11813 (Planned): D4Science Preprod Gateway upgrade to gCube 4.11.1

Massimiliano Assante

06:27 PM D4Science Infrastructure Upgrade #11813 (Completed): D4Science Preprod Gateway upgrade to gCube 4.11.1

Massimiliano Assante

06:26 PM D4Science Infrastructure Upgrade #11812 (Completed): D4Science Infrastructure Upgrade to gCube 4.11.1

Massimiliano Assante

06:01 PM StocksAndFisheriesKB Task #11786: GRSF-services-core updates

the above example of SOURCE RECORD CITATION is fine with me. Aureliano Gentile

05:32 PM StocksAndFisheriesKB Task #11786: GRSF-services-core updates

Hi @marketak@ics.forth.gr
it is ok from my side. I already added the support for 'citation' field in the code.
... Luca Frosini

02:33 PM StocksAndFisheriesKB Task #11786: GRSF-services-core updates

Hi Yannis,
I can reply to..
Yannis Marketakis wrote:
> * We tried to improve the readability of species and ... Francesco Mangiacrapa

12:49 PM StocksAndFisheriesKB Task #11786: GRSF-services-core updates

The aforementioned updates have been carried out. There are still the following pending issues, which I would like to... Yannis Marketakis

10:56 AM StocksAndFisheriesKB Task #11786: GRSF-services-core updates

* create a new field called connections_indicator that will contain the values connected / not connected --> **DONE**... Yannis Marketakis

12:39 PM StocksAndFisheriesKB Feature #11806: Add sub-groups for available time series related to GRSF Type "assessment unit"

I checked the sub-groups, also through the "Group Hierarchy" view and looks fine, but at the moment they are all empt... Aureliano Gentile

12:20 PM StocksAndFisheriesKB Feature #11806 (Feedback): Add sub-groups for available time series related to GRSF Type "assessment unit"

@aureliano.gentile@fao.org I just added the new sub-groups of assessment unit as listed above: https://support.d4scie... Francesco Mangiacrapa

12:07 PM StocksAndFisheriesKB Feature #11806 (In Progress): Add sub-groups for available time series related to GRSF Type "assessment unit"

Francesco Mangiacrapa

09:30 AM D4Science Infrastructure Task #11733 (Closed): Dismiss the ganeti cluster: dlib5x, dlib7xx, dlib11x

hardware switched off Tommaso Piccioli

May 18, 2018

05:17 PM D4Science Infrastructure Support #11772: Please provide access to pc-frosini.isti.cnr.it to prod authorization service

Thanks Luca Frosini

05:16 PM D4Science Infrastructure Support #11772 (Closed): Please provide access to pc-frosini.isti.cnr.it to prod authorization service

Lucio Lelii

04:35 PM D4Science Infrastructure Incident #11800 (Closed): BlueBRIDGE catalogue is not responding well

The issue is related to the fact that the gCubeApps VO Is Collector is overloaded and takes time to respond. please f... Massimiliano Assante

04:20 PM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

Francesco Mangiacrapa wrote:
> Massimiliano Assante wrote:
> > The exception you reported (SEVERE: Servlet.service(... Massimiliano Assante

04:13 PM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

Massimiliano Assante wrote:
> The exception you reported (SEVERE: Servlet.service() for servlet jsp threw exception ... Francesco Mangiacrapa

03:37 PM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

The exception you reported (SEVERE: Servlet.service() for servlet jsp threw exception java.lang.IllegalStateException... Massimiliano Assante

03:02 PM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

@roberto.cirillo@isti.cnr.it
About your comments reported at https://support.d4science.org/issues/11800#note-6
... Francesco Mangiacrapa

11:49 AM D4Science Infrastructure Incident #11800 (Feedback): BlueBRIDGE catalogue is not responding well

why do you think this is a problem related to IS-Collector service? Roberto Cirillo

11:48 AM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

Francesco Mangiacrapa wrote:
> Roberto Cirillo wrote:
> > Please @francesco.mangiacrapa@isti.cnr.it could you provi... Roberto Cirillo

11:23 AM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

Roberto Cirillo wrote:
> Please @francesco.mangiacrapa@isti.cnr.it could you provide the logs that you are checking?... Francesco Mangiacrapa

11:03 AM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

Please @francesco.mangiacrapa@isti.cnr.it could you provide the logs that you are checking?
@massimiliano.assante@i... Roberto Cirillo

10:57 AM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

9.41 AM this morning, yesterday 17.30 circa Massimiliano Assante

10:52 AM D4Science Infrastructure Incident #11800: BlueBRIDGE catalogue is not responding well

Another clarification... contacting the BB Catalogue directly by the CKAN URL (https://ckan-bb1.d4science.org/) it re... Francesco Mangiacrapa

10:45 AM D4Science Infrastructure Incident #11800 (In Progress): BlueBRIDGE catalogue is not responding well

Checking the logs it seems that the issue is connected to IS-queries. In fact, when in init phase the responses to IS... Francesco Mangiacrapa

09:49 AM D4Science Infrastructure Incident #11800 (Closed): BlueBRIDGE catalogue is not responding well

Since yesterday I noticed that the BB Catalogue has some issues when loading, the behaviour is not deterministic. Aft... Massimiliano Assante

04:20 PM D4Science Infrastructure Task #11801: Create PerformFish project group in Redmine

Yes. Gianpaolo Coro

04:02 PM D4Science Infrastructure Task #11801: Create PerformFish project group in Redmine

@gianpaolo.coro@isti.cnr.it can you please confirm? Luca Frosini

04:02 PM D4Science Infrastructure Task #11801: Create PerformFish project group in Redmine

I was related to that no one sprint was present. Creating one sprint (i.e. VRE) solved the issue. Luca Frosini

02:39 PM D4Science Infrastructure Task #11801: Create PerformFish project group in Redmine

When I create a Task ticket it gives the error "Sprint can't be blank" Gianpaolo Coro

02:33 PM D4Science Infrastructure Task #11801 (Closed): Create PerformFish project group in Redmine

The project is available with the requested features here
https://support.d4science.org/projects/performfish Luca Frosini

02:27 PM D4Science Infrastructure Task #11801 (In Progress): Create PerformFish project group in Redmine

Luca Frosini

10:27 AM D4Science Infrastructure Task #11801 (Closed): Create PerformFish project group in Redmine

Tickets should be assigned to the PerformFish project (corresponding to the PerformFish VRE). Could you please create... Gianpaolo Coro

04:15 PM StocksAndFisheriesKB Feature #11806: Add sub-groups for available time series related to GRSF Type "assessment unit"

All these are sub-groups of assessment unit https://bluebridge.d4science.org/group/grsf_admin/data-catalogue?path=gro... Aureliano Gentile

04:00 PM StocksAndFisheriesKB Feature #11806: Add sub-groups for available time series related to GRSF Type "assessment unit"

Where should these sub-groups be created?
Under:
1. the group "GRSF Assessment Unit" reachable at https://blue... Francesco Mangiacrapa

03:12 PM StocksAndFisheriesKB Feature #11806: Add sub-groups for available time series related to GRSF Type "assessment unit"

Forgot scientific advice:
> The sub-groups for stock status time series are:
>
> * Abundance Level (FIRMS Stand... Aureliano Gentile

12:42 PM StocksAndFisheriesKB Feature #11806 (Closed): Add sub-groups for available time series related to GRSF Type "assessment unit"

The sub-groups for stock status time series are:
* Abundance Level (FIRMS Standard)
* Abundance Level
* Fishing ... Aureliano Gentile

May 17, 2018

04:37 PM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service

I set The VM creation blocked by the ticket tracking refactoring the smart-executor plugin #11756. You don't need to ... Luca Frosini

10:41 AM D4Science Infrastructure VM Creation #11771: Please create a VM having access to prod authorization service

this VM is not required until the ticket #11770 is not closed. See such tickets for more details Luca Frosini

04:36 PM D4Science Infrastructure VM Creation #11770 (Rejected): Please create a VM having access to dev authorization service

I talk with @pasquale.pagano@isti.cnr.it and we don't need an instance in dev. I'm going to close this ticket. Only p... Luca Frosini

10:40 AM D4Science Infrastructure VM Creation #11770: Please create a VM having access to dev authorization service

I set The VM creation blocked by the ticket tracking refactoring the smart-executor plugin. You don't need to create ... Luca Frosini

10:42 AM StocksAndFisheriesKB Task #11786 (In Progress): GRSF-services-core updates

Yannis Marketakis

10:42 AM StocksAndFisheriesKB Task #11786 (Closed): GRSF-services-core updates

The following updates are required in the grsf-services-core component:
* apply the new types for Stocks: (Assessm... Yannis Marketakis

May 16, 2018

10:49 PM D4Science Infrastructure Support #11763 (Closed): Unable to update algorithms on DataMiner

I built it from scratch and I managed publish it without any errors :).
Thanks,
Daniel
Daniel Williams

03:13 PM StocksAndFisheriesKB Feature #11766 (Closed): Add a tag (or group) for GRSF connected / not connected records

Luca Frosini

03:06 PM StocksAndFisheriesKB Feature #11766: Add a tag (or group) for GRSF connected / not connected records

@marketak@ics.forth.gr is sounds good for me. Thanks a lot. Luca Frosini

07:53 AM StocksAndFisheriesKB Feature #11766: Add a tag (or group) for GRSF connected / not connected records

Of course.
Shall we use the field name **connections_indicator** with the values "connected" and "not connected" ? Yannis Marketakis

02:39 PM D4Science Infrastructure VM Creation #11038: FrenchTropicalTunaAtlas dedicated GeoNetwork

I confirm what @fabio.sinibaldi@isti.cnr.it said. Roberto Cirillo

12:42 PM D4Science Infrastructure VM Creation #11038: FrenchTropicalTunaAtlas dedicated GeoNetwork

IS seems to be correctly configured as you can see at http://sdi.d4science.org/sdi-service/gcube/service/SDI?gcube-to... Fabio Sinibaldi

12:32 PM D4Science Infrastructure VM Creation #11038: FrenchTropicalTunaAtlas dedicated GeoNetwork

@roberto.cirillo@isti.cnr.it please the configuration of the resources in the IS and assign the right GN if needed.
... Pasquale Pagano

12:23 PM D4Science Infrastructure VM Creation #11038: FrenchTropicalTunaAtlas dedicated GeoNetwork

Paul Taconet wrote:
> The Geonetwork catalogue on the French Tropical Tuna Atlas VRE is the FAO Tuna atlas one (i.e.... Andrea Dell'Amico

12:19 PM D4Science Infrastructure VM Creation #11038: FrenchTropicalTunaAtlas dedicated GeoNetwork

The Geonetwork catalogue on the French Tropical Tuna Atlas VRE is the FAO Tuna atlas one (i.e. when I click on "Data ... Paul Taconet

May 15, 2018

06:12 PM D4Science Infrastructure VM Creation #11492 (Closed): Please create new VM for hosting Natural Language Processing (NLP) web applications: nlp.d4science.org

The certificate has been emitted on April 12th.
Andrea Dell'Amico

05:06 PM StocksAndFisheriesKB Feature #11766 (In Progress): Add a tag (or group) for GRSF connected / not connected records

@marketak@ics.forth.gr can we manage such a requirements as done for 'With Similarities' - 'No Similarities' (see #11... Luca Frosini

03:04 PM StocksAndFisheriesKB Feature #11766: Add a tag (or group) for GRSF connected / not connected records

Aureliano Gentile wrote:
> since it would be the same logic as "with/without similarities" tags, maybe it is better ... Francesco Mangiacrapa

12:42 PM StocksAndFisheriesKB Feature #11766: Add a tag (or group) for GRSF connected / not connected records

since it would be the same logic as "with/without similarities" tags, maybe it is better to have "connected/not conne... Aureliano Gentile

11:29 AM StocksAndFisheriesKB Feature #11766: Add a tag (or group) for GRSF connected / not connected records

Have two additional tags "connected / "not connected" is feasible through the (GRSF) publishing service by reading th... Francesco Mangiacrapa

05:06 PM StocksAndFisheriesKB Feature #11749: Add 'With Similarities' - 'No Similarities' tag to GRSF Records

@marketak@ics.forth.gr added the support on KB providing an additional field named 'similarities_indicator' containin... Luca Frosini

04:59 PM StocksAndFisheriesKB Feature #11767 (Closed): Add group for SDG flag

Luca Frosini

12:51 PM StocksAndFisheriesKB Feature #11767: Add group for SDG flag

Aureliano Gentile wrote:
> Thanks, but please note is "SDG" not sdf.
Sure! It was my wrong typing in the previous... Francesco Mangiacrapa

12:39 PM StocksAndFisheriesKB Feature #11767: Add group for SDG flag

Thanks, but please note is "SDG" not sdf. Aureliano Gentile

11:16 AM StocksAndFisheriesKB Feature #11767: Add group for SDG flag

I just created the group "SDF Flag" available at https://bluebridge.d4science.org/group/grsf_admin/data-catalogue?pat... Francesco Mangiacrapa

11:49 AM D4Science Infrastructure Task #11709 (In Progress): Post configuration of the oVirt manager

Andrea Dell'Amico

May 14, 2018

06:02 PM StocksAndFisheriesKB Feature #11773: CKAN enhancements: show a spinner image facility during the page loading

Thanks a lot, I see it in Firefox, not in Chrome. But it might be my persistent browser cache. Anyway thanks a lot! Aureliano Gentile

05:46 PM StocksAndFisheriesKB Feature #11773 (Closed): CKAN enhancements: show a spinner image facility during the page loading

This facility has been released in production. It is available for all CKANs.
Unfortunately, at the moment **it does... Francesco Mangiacrapa

03:45 PM StocksAndFisheriesKB Feature #11773 (Closed): CKAN enhancements: show a spinner image facility during the page loading

Natively the CKAN template does not show a loading facility (i.e. a spinner as popoup) during the page loading.
It ... Francesco Mangiacrapa

05:38 PM D4Science Infrastructure Support #11772: Please provide access to pc-frosini.isti.cnr.it to prod authorization service

@lucio.lelii@isti.cnr.it You had doubts. Can you elaborate?
Andrea Dell'Amico

03:11 PM D4Science Infrastructure Support #11772 (Closed): Please provide access to pc-frosini.isti.cnr.it to prod authorization service

This is needed until I have refactored the smart-executor plugin to support data harvesting.
Luca Frosini

03:18 PM D4Science Infrastructure Task #11769 (Closed): Please provide access to pc-frosini.isti.cnr.it to dev authorization service

The dev authorization service is open to everyone. Lucio Lelii

02:59 PM D4Science Infrastructure Task #11769 (Closed): Please provide access to pc-frosini.isti.cnr.it to dev authorization service

This is needed to develop data harvester smart-executor plugin capable to be scheduled Luca Frosini

03:05 PM D4Science Infrastructure VM Creation #11771 (Closed): Please create a VM having access to prod authorization service

Luca Frosini

03:03 PM D4Science Infrastructure VM Creation #11770 (Rejected): Please create a VM having access to dev authorization service

Luca Frosini

03:01 PM D4Science Infrastructure Support #11763 (Feedback): Unable to update algorithms on DataMiner

I solved the problems with the Workspace.
Please @daniel.williams@southwales.ac.uk , can you try to republish your ... Giancarlo Panichi

10:29 AM D4Science Infrastructure Support #11763 (In Progress): Unable to update algorithms on DataMiner

Hi @daniel.williams@southwales.ac.uk, It would seem like a Workspace issue, I try to investigate it. Giancarlo Panichi

01:39 PM D4Science Infrastructure Task #11762 (Closed): The LDAP server, when in producer (master) mode, never removes the log files used to handle the replica changes

Fixed a bug that prevented the script to find that the service was not running. Now it's reliable. Andrea Dell'Amico

11:52 AM StocksAndFisheriesKB Feature #11767 (Closed): Add group for SDG flag

Similarly to "GRSF Traceability Flag" we need a group for "SDG Flag" Aureliano Gentile

11:49 AM StocksAndFisheriesKB Feature #11766 (Closed): Add a tag (or group) for GRSF connected / not connected records

Equivalently to the tag "With similarities" / "without similarities", to support the validation procedures it would b... Aureliano Gentile

May 13, 2018

11:16 PM D4Science Infrastructure Support #11763: Unable to update algorithms on DataMiner

please @g.panichi@isti.cnr.it look at this issue. Pasquale Pagano

10:35 PM D4Science Infrastructure Support #11763 (Closed): Unable to update algorithms on DataMiner

I am trying to update two "Pre-installed" type projects using the SAI however I am receiving an exception each time I... Daniel Williams

05:37 PM D4Science Infrastructure Task #11762 (Feedback): The LDAP server, when in producer (master) mode, never removes the log files used to handle the replica changes

I split the two cases.
* I added a cron job that runs at 5am every day. It tries a restart of the `slapd` service.... Andrea Dell'Amico

05:33 PM D4Science Infrastructure Task #11762 (In Progress): The LDAP server, when in producer (master) mode, never removes the log files used to handle the replica changes

Andrea Dell'Amico

05:32 PM D4Science Infrastructure Task #11762 (Closed): The LDAP server, when in producer (master) mode, never removes the log files used to handle the replica changes

ldap uses a specialised set of log files, under `/var/lib/ldap/accesslog`, so that the consumers are able to get the ... Andrea Dell'Amico

May 11, 2018

02:27 PM StocksAndFisheriesKB Bug #11754: Wrong or missing format for source/data owner metadata in narrative fields (Assessment Methods ; Scientific advice ; State and trend of Marine Resource)

@marketak@ics.forth.gr thanks for your support Luca Frosini

02:26 PM StocksAndFisheriesKB Bug #11754 (In Progress): Wrong or missing format for source/data owner metadata in narrative fields (Assessment Methods ; Scientific advice ; State and trend of Marine Resource)

As reported from @aureliano.gentile@fao.org "in state an trend of marine resource the reporting year is still missing... Luca Frosini

12:38 PM StocksAndFisheriesKB Bug #11754: Wrong or missing format for source/data owner metadata in narrative fields (Assessment Methods ; Scientific advice ; State and trend of Marine Resource)

Hi Luca,
attached you will find the JSON object for the particular record Yannis Marketakis

11:44 AM StocksAndFisheriesKB Bug #11754 (Closed): Wrong or missing format for source/data owner metadata in narrative fields (Assessment Methods ; Scientific advice ; State and trend of Marine Resource)

In this example ‘Scientific advice” and “State and trend of marine resources” are not consistently referenced as now ... Luca Frosini

02:19 PM StocksAndFisheriesKB Feature #11747 (Closed): CKAN Template enhancement: show full text of TAGs

Aureliano Gentile wrote:
> The display of the tags is now much better, thanks a lot. But to finally clear this point... Luca Frosini

02:18 PM StocksAndFisheriesKB Task #11464 (Closed): Update stock endpoint for GRSF-Publication-Service

Luca Frosini

08:21 AM StocksAndFisheriesKB Task #11464: Update stock endpoint for GRSF-Publication-Service

Yes I think so Yannis Marketakis

11:21 AM StocksAndFisheriesKB Feature #11752 (Closed): "Archived" is missing among the NEW status values to be selected for GRSF records Admin Panel

Luca Frosini

May 10, 2018

06:26 PM StocksAndFisheriesKB Feature #11747: CKAN Template enhancement: show full text of TAGs

The display of the tags is now much better, thanks a lot. But to finally clear this point, may I know the total amoun... Aureliano Gentile

02:48 PM StocksAndFisheriesKB Feature #11747: CKAN Template enhancement: show full text of TAGs

IHMO they are fine. Do you agree @aureliano.gentile@fao.org ? Luca Frosini

02:44 PM StocksAndFisheriesKB Feature #11747 (Feedback): CKAN Template enhancement: show full text of TAGs

I just updated the template adding the above facility. TAGs and Navigation Items (i.e. the labels/links used for filt... Francesco Mangiacrapa

11:02 AM StocksAndFisheriesKB Feature #11747 (Closed): CKAN Template enhancement: show full text of TAGs

From: https://support.d4science.org/projects/stocksandfisherieskb/wiki/18-05-09-GRSF_release
CKAN Template enhance... Francesco Mangiacrapa

05:10 PM StocksAndFisheriesKB Task #11464: Update stock endpoint for GRSF-Publication-Service

It seems working. Do you think I can close the ticket? Luca Frosini

05:09 PM StocksAndFisheriesKB Feature #11749 (Closed): Add 'With Similarities' - 'No Similarities' tag to GRSF Records

Luca Frosini

11:34 AM StocksAndFisheriesKB Feature #11749 (Closed): Add 'With Similarities' - 'No Similarities' tag to GRSF Records

The tag will be added using the value of 'similarities_indicator' field as agreed with @marketak@ics.forth.gr Luca Frosini

11:29 AM D4Science Infrastructure Task #11718 (Closed): please enable context "sports-analytics" to exploratories.d4science.org

Massimiliano Assante

May 09, 2018

06:15 PM D4Science Infrastructure VM Creation #11729: VM for mongo

mongodb is running. You have access as `ubuntu`, the mongodb server will be open to our ISTI networks and to the GARR... Andrea Dell'Amico

05:47 PM D4Science Infrastructure VM Creation #11729: VM for mongo

I'm installing mongo 3.6. The firewall rules cannot be setup correctly until the maintenance window of the GARR clust... Andrea Dell'Amico

04:38 PM D4Science Infrastructure Task #11745 (Closed): node14-d-d4s.d4science.org: Increase file descriptor limit to 16000 on registry service instance

Roberto Cirillo

03:35 PM D4Science Infrastructure Task #11745: node14-d-d4s.d4science.org: Increase file descriptor limit to 16000 on registry service instance

No, I didn't notice that the user is gcube2 and not gcube. Now the limit applies to gcube2 too.
Andrea Dell'Amico

02:45 PM D4Science Infrastructure Task #11745 (Feedback): node14-d-d4s.d4science.org: Increase file descriptor limit to 16000 on registry service instance

Andrea Dell'Amico wrote:
> Done. The service must be restarted to inherit the change.
>
> Next time you can apply... Roberto Cirillo

12:31 PM D4Science Infrastructure Task #11745 (In Progress): node14-d-d4s.d4science.org: Increase file descriptor limit to 16000 on registry service instance

Done. The service must be restarted to inherit the change.
Next time you can apply the change by yourself, running... Andrea Dell'Amico

11:59 AM D4Science Infrastructure Task #11745 (Closed): node14-d-d4s.d4science.org: Increase file descriptor limit to 16000 on registry service instance

As done in production, it's needed to increase the file descriptor limit to 16000 in order to avoid the TooManyOpenFi... Roberto Cirillo

May 08, 2018

06:15 PM D4Science Infrastructure Task #11737: Please setup a Nextcloud instance on D4Science

Better install it in one of the GARR regions, as B2Drop will be a remote service.
If we then like it or some of it... Andrea Dell'Amico

05:04 PM D4Science Infrastructure VM Creation #11729: VM for mongo

The hostname is mongo-playground.dnet.d4science.org Andrea Dell'Amico

04:57 PM D4Science Infrastructure VM Creation #11729 (In Progress): VM for mongo

Andrea Dell'Amico

May 07, 2018

05:05 PM D4Science Infrastructure Task #11732: Please install apa6 CTAN package on ShareLaTex

The apa6 package is available here:
https://www.ctan.org/pkg/apa6
The same functionality are also provided by
... Luca Frosini

04:05 PM D4Science Infrastructure Task #11738 (Closed): Mapping files and URLs

`I gave access permissions from our networks too, let me know if it's OK.`
it's Ok
Miriam Baglioni

03:32 PM D4Science Infrastructure Task #11738 (Feedback): Mapping files and URLs

Done. Everything is also indexed.
I gave access permissions from our networks too, let me know if it's OK.
Andrea Dell'Amico

03:19 PM D4Science Infrastructure Task #11738 (In Progress): Mapping files and URLs

Andrea Dell'Amico

03:13 PM D4Science Infrastructure Task #11738 (Closed): Mapping files and URLs

Please make all the files under the folder `/data/RS` of `dev-openaire.d4science.org` be visible as URLs from
`
de... Miriam Baglioni

02:43 PM D4Science Infrastructure Task #11737 (Closed): Please setup a Nextcloud instance on D4Science

The instance would be needed for the integration between D4Science Workspace and EUDAT B2Drop Massimiliano Assante

May 05, 2018

08:32 PM D4Science Infrastructure Task #11733: Dismiss the ganeti cluster: dlib5x, dlib7xx, dlib11x

I just removed the nodes from nagios.
Andrea Dell'Amico

08:18 PM D4Science Infrastructure Task #11733 (Closed): Dismiss the ganeti cluster: dlib5x, dlib7xx, dlib11x

Those servers can be retired, nothing is running on them.
Andrea Dell'Amico

08:13 PM D4Science Infrastructure Task #11396 (Closed): Move the VM hosted on the Ganeti cluster to the oVirt cluster

ns-cache2 has been moved to oVirt, running unbound instead of bind.
Andrea Dell'Amico

May 04, 2018

07:52 PM D4Science Infrastructure Task #11732 (Closed): Please install apa6 CTAN package on ShareLaTex

I just recognized that for a paper submission apa6 CTAN package is needed (i was using apacite)
https://tex.stackex... Luca Frosini

07:52 PM D4Science Infrastructure Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster

ns-cache1.d4science.org has been moved to the oVirt cluster. It's now backed by unbound instead of bind.
I forced it... Andrea Dell'Amico

03:05 PM D4Science Infrastructure Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster

The SMTP relay has been moved on oVirt.
Andrea Dell'Amico

05:13 PM D4Science Infrastructure Support #11560 (In Progress): Remove old CDH 5.9 Cluster

The CDH 9 cluster at GARR-CT1 has been destroyed. Andrea Dell'Amico

05:07 PM D4Science Infrastructure Task #11728 (Closed): Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration

We chose to disable the check on the swap, it's not so useful in the first place.
I still added a fix to the nrpe co... Andrea Dell'Amico

04:29 PM D4Science Infrastructure Incident #11731 (Closed): geoserver-french-tunaatlas.d4science.org still runs a smartgears with the accounting bug

Done. Andrea Dell'Amico

04:25 PM D4Science Infrastructure Incident #11731 (In Progress): geoserver-french-tunaatlas.d4science.org still runs a smartgears with the accounting bug

Andrea Dell'Amico

04:25 PM D4Science Infrastructure Incident #11731 (Closed): geoserver-french-tunaatlas.d4science.org still runs a smartgears with the accounting bug

It must be upgraded to the latest release. Andrea Dell'Amico

May 03, 2018

06:19 PM D4Science Infrastructure Support #11560: Remove old CDH 5.9 Cluster

Also the Hortonworks cluster should be dismissed. @michele.debonis@isti.cnr.it would you comment here when we are rea... Andrea Dell'Amico

05:45 PM D4Science Infrastructure Task #11717 (Closed): please enable context "well-being" to exploratories.d4science.org

Massimiliano Assante

03:39 PM D4Science Infrastructure Task #11728: Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration

The ntp configuration has been fixed too. Andrea Dell'Amico

12:28 PM D4Science Infrastructure Task #11728: Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration

The check_memory now is handled. On Ubuntu 16.04 a fixed version is installed and used by nrpe.
Andrea Dell'Amico

12:14 PM D4Science Infrastructure Task #11728 (In Progress): Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration

Andrea Dell'Amico

11:46 AM D4Science Infrastructure Task #11728 (Closed): Ubuntu 16.04 needs some fixes on the nagios checks and the ntp configuration

* The NTP configuration is more restrictive than in the previous distribution versions, so an explicit configuratio... Andrea Dell'Amico

02:38 PM D4Science Infrastructure VM Creation #11729 (Closed): VM for mongo

Please create a new VM for mongo to replace the instance on playground.
Miriam Baglioni

12:07 PM D4Science Infrastructure Support #11706 (Closed): Bulk addition of users to VRE

The page linked by Andrea lists all the accounts and allow to select the ones to be added. There is no facility to pr... Massimiliano Assante

May 02, 2018

08:57 PM D4Science Infrastructure Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster

gw1.d4science.org has been created on the ovirt cluster. Andrea Dell'Amico

06:50 PM D4Science Infrastructure Task #11396 (In Progress): Move the VM hosted on the Ganeti cluster to the oVirt cluster

Andrea Dell'Amico

06:49 PM D4Science Infrastructure Task #11396: Move the VM hosted on the Ganeti cluster to the oVirt cluster

The transition of gw2.d4science.org went well. I've found a couple of parameters that needed a refinement, I've commi... Andrea Dell'Amico

07:08 PM D4Science Infrastructure Task #11709: Post configuration of the oVirt manager

I've temporary created the host template.d4science.org with IP 146.48.123.174 to setup a VM that will be used to crea... Andrea Dell'Amico

05:21 PM D4Science Infrastructure Task #11709: Post configuration of the oVirt manager

The already available templates for the virtual machines need some refinement. I'm going to create a new template for... Andrea Dell'Amico

05:21 PM D4Science Infrastructure Task #11709: Post configuration of the oVirt manager

The firewalld related ansible tasks must be the equivalent of the following commands:
~~~
firewall-cmd --zone=pub... Andrea Dell'Amico

05:20 PM D4Science Infrastructure Task #10988 (Closed): Install oVirt on dlib14x-19x

This can be closed, the remaining tasks pertain to #11709 Andrea Dell'Amico

05:16 PM D4Science Infrastructure Task #10988: Install oVirt on dlib14x-19x

The already available templates for the virtual machines need some refinement. I'm going to create a new template for... Andrea Dell'Amico

12:28 PM D4Science Infrastructure Task #11717: please enable context "well-being" to exploratories.d4science.org

that's ok, sorry I misunderstood before.
Now we'd need to give permission to @lucapappalardo1984@gmail.com to uplo... Massimiliano Assante

12:15 PM D4Science Infrastructure Task #11717: please enable context "well-being" to exploratories.d4science.org

You have to create it under `/usr/share/nginx/html/`
I could move that directory under `/home/gcube` but I think th... Andrea Dell'Amico

12:11 PM D4Science Infrastructure Task #11717: please enable context "well-being" to exploratories.d4science.org

I did create a well-being folder under tomcat/webapps and put a sample index.html file but it isn't working
https... Massimiliano Assante

11:59 AM D4Science Infrastructure Task #11717 (Feedback): please enable context "well-being" to exploratories.d4science.org

Andrea Dell'Amico

11:58 AM D4Science Infrastructure Task #11717 (In Progress): please enable context "well-being" to exploratories.d4science.org

The `/usr/share/nginx/html/` is now writeable by the gcube user. It's the web server document root, so you must creat... Andrea Dell'Amico

11:46 AM D4Science Infrastructure Task #11717: please enable context "well-being" to exploratories.d4science.org

Andrea Dell'Amico wrote:
> We are talking about static content, right?
yes. Massimiliano Assante

11:45 AM D4Science Infrastructure Task #11717: please enable context "well-being" to exploratories.d4science.org

We are talking about static content, right?
Andrea Dell'Amico

10:36 AM D4Science Infrastructure Task #11717 (Closed): please enable context "well-being" to exploratories.d4science.org

The story for the wellbeing exploratory is ready, we need a some space to upload the webpage to be linked. Will do it... Massimiliano Assante

11:59 AM D4Science Infrastructure Task #11718 (Feedback): please enable context "sports-analytics" to exploratories.d4science.org

Andrea Dell'Amico

11:59 AM D4Science Infrastructure Task #11718 (In Progress): please enable context "sports-analytics" to exploratories.d4science.org

The `/usr/share/nginx/html/` is now writeable by the gcube user. It's the web server document root, so you must creat... Andrea Dell'Amico

10:44 AM D4Science Infrastructure Task #11718 (Closed): please enable context "sports-analytics" to exploratories.d4science.org

The story for the Sports Data Science exploratory is ready, we need a some space to upload the webpage to be linked. ... Massimiliano Assante

11:17 AM D4Science Infrastructure Support #11706: Bulk addition of users to VRE

From here: https://services.d4science.org/group/dnet/add-existing-users Andrea Dell'Amico

10:58 AM D4Science Infrastructure Support #11706: Bulk addition of users to VRE

What do you mean by manually select one by one each user I want to add? manually select from where? Massimiliano Assante

Apr 30, 2018

04:58 PM D4Science Infrastructure Task #11709 (Closed): Post configuration of the oVirt manager

* Install the ansible tasks that customise the hypervisor firewall
* Customise the ovirtmanager firewall in the same... Andrea Dell'Amico

Apr 27, 2018

04:49 PM D4Science Infrastructure Support #11706 (Closed): Bulk addition of users to VRE

We have a list of users that should be added to the dnet VRE to be enabled to use SVN.
Is there a way to do it in b... Alessia Bardi

Apr 24, 2018

07:24 PM D4Science Infrastructure Task #11700 (Closed): DataMiner - check svn status on Production

I forced a `chown -R gcube:gcube /home/gcube/wps_algorithms/algorithms` on all the production dataminers. Andrea Dell'Amico

07:18 PM D4Science Infrastructure Task #11700: DataMiner - check svn status on Production

The provisioning of that part always happens as `gcube` user. The relevant tasks are:
~~~
- block:
- name: Ins... Andrea Dell'Amico

07:10 PM D4Science Infrastructure Task #11700 (In Progress): DataMiner - check svn status on Production

I have made a check and it seems that this error is present on many production machines always with the same date.
S... Giancarlo Panichi

06:11 PM D4Science Infrastructure Task #11700 (Closed): DataMiner - check svn status on Production

Someone operated the svn repository as root - again - on that dataminer:
~~~
ls -la /home/gcube/wps_algorithms/al... Andrea Dell'Amico

05:56 PM D4Science Infrastructure Task #11700 (Closed): DataMiner - check svn status on Production

I noticed that the DataMiner service in production are not updating the algorithms.
It looks like there are problems... Giancarlo Panichi

05:18 PM D4Science Infrastructure VM Creation #11673: Create 15 dataminer instances in the PA GARR region

All the test passed, can we close the ticket ?
Lucio Lelii

03:06 PM D4Science Infrastructure VM Creation #11673 (Closed): Create 15 dataminer instances in the PA GARR region

The DMs work! Gianpaolo Coro

03:13 PM D4Science Infrastructure VRE #11093 (Released): DOPA spatial planning VRE

Massimiliano Assante

Apr 23, 2018

02:07 PM D4Science Infrastructure VM Creation #11673 (In Progress): Create 15 dataminer instances in the PA GARR region

Gianpaolo Coro

02:06 PM D4Science Infrastructure VM Creation #11673: Create 15 dataminer instances in the PA GARR region

@lucio.lelii@isti.cnr.it please, could you run automatic tests?
The GW cluster is dataminer-genericworkers.d4science... Gianpaolo Coro

12:49 PM D4Science Infrastructure VM Creation #11673 (Closed): Create 15 dataminer instances in the PA GARR region

As I received no feedback, I assume that the instances are working correctly. Andrea Dell'Amico

12:51 PM D4Science Infrastructure Task #11676 (Closed): Destroy the old generic workers dataminer instances and 5 dataminers in the CT GARR region.

The old genericworkers have been destroyed. Andrea Dell'Amico