D4science

Mar 03, 2018

08:25 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

I also changed the r_connector playbook so that we can choose the correct parameters for the GARR instances. Next mon... Andrea Dell'Amico

08:10 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

I just committed all the configuration templates and tasks needed to setup a provider/consumer configuration. I chose... Andrea Dell'Amico

07:20 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

It works, with start_tls and not SSL, because the certificate does not match the hostname (we are using the private I... Andrea Dell'Amico

06:18 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

We have a working replica. I'm now going to reconfigure one of the rstudio servers and check if the setup works. Andrea Dell'Amico

Mar 02, 2018

05:39 PM D4Science Infrastructure Task #11347 (Closed): Add RAM to geonetwork-sdi-lab.d4science.org

Done. Andrea Dell'Amico

04:11 PM D4Science Infrastructure Task #11347 (In Progress): Add RAM to geonetwork-sdi-lab.d4science.org

Added 2 GB in the configuration, I will restart it later Andrea Dell'Amico

04:10 PM D4Science Infrastructure Task #11347 (Closed): Add RAM to geonetwork-sdi-lab.d4science.org

The VM needs more memory Andrea Dell'Amico

04:14 PM D4Science Infrastructure Task #11348 (Rejected): Remove the elasticsearch instance from wds-dli.dnet.d4science.org

And reduce the VM memory accordingly.
Andrea Dell'Amico

11:49 AM D4Science Infrastructure Task #11175 (Closed): Revert the workaround on the ckan solr reverse proxy

Done. Andrea Dell'Amico

Mar 01, 2018

10:06 PM D4Science Infrastructure Task #11333 (Closed): Reconfigure jenkins-dnet.d4science.org to authenticate against ldap.d4science.org

Nothing should change for the users. Andrea Dell'Amico

10:01 PM D4Science Infrastructure Task #11332 (Closed): Change the openaire redmine instance to use ldap.d4science.org for the authentication

Nothing should change for the users.
Andrea Dell'Amico

09:51 PM D4Science Infrastructure Task #7476 (Closed): Change hostname of IC proxy service from node79 to "registry.d4science.org" and move it over https

Andrea Dell'Amico

09:48 PM D4Science Infrastructure Task #10938 (Closed): Reconfigure geonetwork.geothermaldata.d4science.org

Done. Andrea Dell'Amico

09:47 PM D4Science Infrastructure Task #10940 (Closed): Move the geonetwork.geothermaldata services on a new VM

Andrea Dell'Amico

09:45 PM D4Science Infrastructure Task #11175: Revert the workaround on the ckan solr reverse proxy

@francesco.mangiacrapa@isti.cnr.it can we proceed?
Andrea Dell'Amico

09:44 PM D4Science Infrastructure VM Creation #11266 (Closed): Provide new VM for hosting the sdmx-datasource service

Andrea Dell'Amico

09:44 PM D4Science Infrastructure Task #10859 (Closed): Different Mono versions on servers?

Andrea Dell'Amico

09:42 PM D4Science Infrastructure Task #10826 (Closed): CPU vulnerability

I'm closing this one. We cannot do anything on our running VMs because we cannot upgrade the kernel, and the only way... Andrea Dell'Amico

09:38 PM D4Science Infrastructure Task #3262: Change the ldap authentication for the d4science subversion repository

Now that we have the required VREs and the ldap contents have been completely migrated, we can switch the authenticat... Andrea Dell'Amico

08:56 PM D4Science Infrastructure Task #8104 (Closed): Merge the manage.research-infrastructures.eu users into ldap.d4science.org

The users were imported by @massimiliano.assante@isti.cnr.it and @tommaso.piccioli@isti.cnr.it Andrea Dell'Amico

08:10 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

Update: I tried in more than one way to add the consumer configuration to the GARR instance, but without success. I'l... Andrea Dell'Amico

Feb 28, 2018

08:19 PM D4Science Infrastructure Task #11313 (In Progress): Activate a LDAP slave at the GARR facility

Andrea Dell'Amico

04:44 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

I'm not adding a hostname under the d4science.org domain right now, we cannot wait for a certificate. Andrea Dell'Amico

04:43 PM D4Science Infrastructure Task #11313: Activate a LDAP slave at the GARR facility

hostname and IP: ip-90-147-166-165.ct1.garrservices.it, 90.147.166.165. Private IP: 192.168.100.32 Andrea Dell'Amico

Feb 27, 2018

02:53 PM D4Science Infrastructure Task #11313 (Closed): Activate a LDAP slave at the GARR facility

Some of the recent rstudio problems are attributable to long timeouts in the ldap connections. The local cache is not... Andrea Dell'Amico

Feb 25, 2018

09:47 PM D4Science Infrastructure VM Creation #11298 (Feedback): WECAFC-FIRMS dedicated GeoNetwork

Andrea Dell'Amico

09:19 PM D4Science Infrastructure VM Creation #11266 (Feedback): Provide new VM for hosting the sdmx-datasource service

The VM is ready. There is no X.509 certificate yet.
Andrea Dell'Amico

Feb 22, 2018

07:18 PM D4Science Infrastructure VM Creation #11266 (In Progress): Provide new VM for hosting the sdmx-datasource service

@roberto.cirillo@isti.cnr.it I gave you ssh access, you can provision the VM as soon as the DNS starts resolving its ... Andrea Dell'Amico

07:09 PM D4Science Infrastructure VM Creation #11266: Provide new VM for hosting the sdmx-datasource service

The VM is ready to be deployed with openjdk, waiting for the DNS. Andrea Dell'Amico

06:40 PM D4Science Infrastructure VM Creation #11266: Provide new VM for hosting the sdmx-datasource service

The running prod is using openjdk. Do we want to switch to the Oracle JDK?
Andrea Dell'Amico

06:35 PM D4Science Infrastructure VM Creation #11266: Provide new VM for hosting the sdmx-datasource service

hostname and IP: wecafc-sdmx-datasource.d4science.org 146.48.122.79
Andrea Dell'Amico

07:14 PM D4Science Infrastructure Task #9213: enable calDAV authentication on D4Science Gateways

Yes, port 443 and hostname without the URL. Andrea Dell'Amico

06:48 PM D4Science Infrastructure Task #9213: enable calDAV authentication on D4Science Gateways

It's getting personal, it seems. It's working for me using `aginfra.d4science.org` as server and `/webdav/user/calend... Andrea Dell'Amico

11:06 AM D4Science Infrastructure Task #11257 (Feedback): DataMiners not responding

I just requested new scopes for all the GARR dataminer, tomcat has been restarted on all hosts (on some of them is ... Andrea Dell'Amico

10:42 AM D4Science Infrastructure Task #11257 (In Progress): DataMiners not responding

I understood what happened
When a GARR VM restarts the hostname is changed by the dhcp server. And when we executed ... Andrea Dell'Amico

Feb 21, 2018

01:08 PM D4Science Infrastructure Task #11257: DataMiners not responding

I've seen this behaviour in the past, on other VMs. I had to request the scopes again.
What's also worrying is tha... Andrea Dell'Amico

Feb 20, 2018

12:38 PM D4Science Infrastructure Task #10940 (Feedback): Move the geonetwork.geothermaldata services on a new VM

Done. We need to give the DNS records some time to propagate.
Keep in mind that I just copied the application, so ... Andrea Dell'Amico

12:33 PM D4Science Infrastructure Task #10940: Move the geonetwork.geothermaldata services on a new VM

Thanks Fabio, I'm going to switch the hostname to the new node. Andrea Dell'Amico

11:45 AM D4Science Infrastructure VM Creation #11202 (Closed): Install ElasticHQ for ES 5 cluster

Andrea Dell'Amico

Feb 19, 2018

07:50 PM D4Science Infrastructure Task #10940: Move the geonetwork.geothermaldata services on a new VM

I configured the new node and copied the old geonetwork instance. It answers here: http://geonetwork1.geothermaldata.... Andrea Dell'Amico

05:40 PM D4Science Infrastructure Task #10940 (In Progress): Move the geonetwork.geothermaldata services on a new VM

Andrea Dell'Amico

05:24 PM D4Science Infrastructure Task #11047: Install PhotoScan license server on dlib8x.dom0.research-infrastructures.eu (rename the host)

I don't know why a license manager must run as root. But yes, we can do it. We must reinstall that server anyway, bec... Andrea Dell'Amico

03:54 PM D4Science Infrastructure Task #7476: Change hostname of IC proxy service from node79 to "registry.d4science.org" and move it over https

And removed the nagios configuration. Andrea Dell'Amico

03:51 PM D4Science Infrastructure Task #7476 (Feedback): Change hostname of IC proxy service from node79 to "registry.d4science.org" and move it over https

I turned it off. Andrea Dell'Amico

12:33 PM D4Science Infrastructure Task #7476: Change hostname of IC proxy service from node79 to "registry.d4science.org" and move it over https

Roberto Cirillo wrote:
> I've notice node79.d4science.org is still running under gCubeApps VO and with a different I... Andrea Dell'Amico

Feb 17, 2018

01:56 PM D4Science Infrastructure Task #10859 (Feedback): Different Mono versions on servers?

I did not find any discrepancies between the installed mono packages, but in the past weeks we solved a couple of pro... Andrea Dell'Amico

01:54 PM D4Science Infrastructure Task #10859 (In Progress): Different Mono versions on servers?

Andrea Dell'Amico

01:33 PM D4Science Infrastructure Task #11047 (Paused): Install PhotoScan license server on dlib8x.dom0.research-infrastructures.eu (rename the host)

What kind of problem, anyway? Can it be related to the relatively old distribution installed? Andrea Dell'Amico

01:32 PM D4Science Infrastructure VM Creation #11126 (Closed): Access to a VM with Geoserver v2.10 istance

Andrea Dell'Amico

01:32 PM D4Science Infrastructure Task #11182 (Closed): DataMiner - Error misaligned algorithms in Proto Cluster

Andrea Dell'Amico

01:31 PM D4Science Infrastructure VM Creation #10927 (Closed): GeoNetwork 3.2.1 for development environment

Andrea Dell'Amico

01:03 PM D4Science Infrastructure VM Creation #11202: Install ElasticHQ for ES 5 cluster

The service is running. I was not able to test it because the access is open from our office and eduroam networks.
... Andrea Dell'Amico

11:59 AM D4Science Infrastructure Task #11204 (Closed): Upgrate smartgears on thredds.d4science.org

To overcome the accounting bugs.
Andrea Dell'Amico

Feb 16, 2018

05:11 PM D4Science Infrastructure VM Creation #11202 (In Progress): Install ElasticHQ for ES 5 cluster

The VM will run at the GARR facilities. The hostname is going to be elastichq.garr.d4science.org
Andrea Dell'Amico

02:50 PM D4Science Infrastructure VM Creation #11202: Install ElasticHQ for ES 5 cluster

ElasticHQ wants python 3.4, so better run it on a dedicated machine.
The 9300 port has been opened, FYI
Andrea Dell'Amico

Feb 15, 2018

04:36 PM D4Science Infrastructure Task #11176 (Closed): The OpenJDK installation does not build /etc/ssl/certs/cacerts correctly

Done. Andrea Dell'Amico

04:34 PM D4Science Infrastructure Task #11176 (In Progress): The OpenJDK installation does not build /etc/ssl/certs/cacerts correctly

Andrea Dell'Amico

Feb 14, 2018

12:48 PM D4Science Infrastructure Task #11182 (Feedback): DataMiner - Error misaligned algorithms in Proto Cluster

This time the script should have been fixed properly.
If not, check if a file named /home/gcube/wps_algorithms_insta... Andrea Dell'Amico

11:51 AM D4Science Infrastructure Task #11182 (In Progress): DataMiner - Error misaligned algorithms in Proto Cluster

No, it's the same problem: the lock file inhibits subsequent runs of the algorithm installer script.
The check seem... Andrea Dell'Amico

Feb 13, 2018

04:07 PM D4Science Infrastructure Task #11174: Please connect to the CKAN solr instance over https

Costantino Perciante wrote:
> Very likely the issue wasn't related to https. In dev I did use https and I don't thin... Andrea Dell'Amico

02:51 PM D4Science Infrastructure Task #11174 (Closed): Please connect to the CKAN solr instance over https

From the infra-gateway servers Andrea Dell'Amico

03:16 PM D4Science Infrastructure Task #11162 (Feedback): both d4science portal cluster nodes accessibile directly via http

Andrea Dell'Amico

03:15 PM D4Science Infrastructure Task #11162 (In Progress): both d4science portal cluster nodes accessibile directly via http

Andrea Dell'Amico

03:15 PM D4Science Infrastructure Task #11162: both d4science portal cluster nodes accessibile directly via http

Massimiliano Assante wrote:
> We have the firewall cluster issue since about 2 years now, but we never had this issu... Andrea Dell'Amico

03:00 PM D4Science Infrastructure Task #11176 (Closed): The OpenJDK installation does not build /etc/ssl/certs/cacerts correctly

The story here: https://bugs.launchpad.net/ubuntu/+source/ca-certificates-java/+bug/1396760 but a faster way to sol... Andrea Dell'Amico

02:53 PM D4Science Infrastructure Task #11175 (Closed): Revert the workaround on the ckan solr reverse proxy

The configuration was manually changed to permit the portal to connect to solr over http instead of https Andrea Dell'Amico

12:54 PM D4Science Infrastructure Task #11173 (Closed): Give the same scopes on all the rstudio instances

Done. Reworked the ansible variable groups to build a proper hierarchy.
Andrea Dell'Amico

12:50 PM D4Science Infrastructure Task #11173 (Closed): Give the same scopes on all the rstudio instances

and authorize all the VREs Andrea Dell'Amico

12:40 PM D4Science Infrastructure VM Creation #11163: Recolecta

Hmm:
~~~
4 240 ACCEPT tcp -- * * 146.48.122.254 0.0.0.0/0 state NEW tcp d... Andrea Dell'Amico

12:04 PM D4Science Infrastructure Task #11171 (Feedback): Please give access to ckan-solr-d4s.d4science.org from portal-production machines

I just added the exception. Beware that the redirection from http to https does not work anymore. That should be harm... Andrea Dell'Amico

11:50 AM D4Science Infrastructure Task #11171 (In Progress): Please give access to ckan-solr-d4s.d4science.org from portal-production machines

From what I see the solr index is already accessible from all our datacenter network via both http and https. But the... Andrea Dell'Amico

Feb 12, 2018

07:54 PM D4Science Infrastructure VM Creation #11163 (Feedback): Recolecta

The VM is ready. You have access as 'michele.debonis', 'claudio.atzori', 'miriam.baglioni'.
You have write access in... Andrea Dell'Amico

04:52 PM D4Science Infrastructure VM Creation #11163 (In Progress): Recolecta

hostname and IP address are going to be recolecta-d.dnet.d4science.org 146.48.122.254 Andrea Dell'Amico

04:33 PM D4Science Infrastructure VM Creation #11035 (Closed): SDI_Lab dedicated GeoNetwork

Andrea Dell'Amico

04:33 PM D4Science Infrastructure VM Creation #11036 (Closed): SDI_Lab dedicated GeoServer

We also have a valid certificate now. Andrea Dell'Amico

04:30 PM D4Science Infrastructure VM Creation #11038 (Closed): FrenchTropicalTunaAtlas dedicated GeoNetwork

Andrea Dell'Amico

04:29 PM D4Science Infrastructure VM Creation #11038: FrenchTropicalTunaAtlas dedicated GeoNetwork

I see that it's crashing because it exhausts the memory. I'm increasing the available RAM to 6GB.
Andrea Dell'Amico

04:30 PM D4Science Infrastructure VM Creation #11045 (Closed): FrenchTropicalTunaAtlas dedicated GeoServer

Andrea Dell'Amico

12:01 PM D4Science Infrastructure Task #11162: both d4science portal cluster nodes accessibile directly via http

Yes, my fault. It's related to #6232, I don't have managed to find the time to investigate the cluster issue yet. Andrea Dell'Amico

Feb 09, 2018

04:22 PM D4Science Infrastructure VM Creation #11126: Access to a VM with Geoserver v2.10 istance

Vincenzo Terrano wrote:
> The "GEOSERVER_DATA_DIR" environment variable has to point to /home/gcube/tomcat/webapps/g... Andrea Dell'Amico

11:32 AM D4Science Infrastructure Incident #11147: The proto dataminers are running out of space

Keep also in mind that the proto dataminers have half the RAM of the other production ones. Andrea Dell'Amico

09:11 AM D4Science Infrastructure Incident #11147 (Closed): The proto dataminers are running out of space

There's data under `/home/gcube/tomcat/webapps/wps/ecocfg` that seems left by past computations, from February 6th an... Andrea Dell'Amico

09:36 AM D4Science Infrastructure VM Creation #11036: SDI_Lab dedicated GeoServer

2.10.0 is running now. Andrea Dell'Amico

09:15 AM D4Science Infrastructure VM Creation #11036: SDI_Lab dedicated GeoServer

I usually install the latest minor because I assume there are bug fixes only. I'm going to install the 2.10.0 version... Andrea Dell'Amico

Feb 08, 2018

05:59 PM D4Science Infrastructure VM Creation #11036: SDI_Lab dedicated GeoServer

@emmanuel.blondel@fao.org I'm really sorry but there's nothing I can do right now. The letsencrypt.org rules are beco... Andrea Dell'Amico

05:37 PM D4Science Infrastructure VM Creation #11126 (Feedback): Access to a VM with Geoserver v2.10 istance

The VM is up, with a geoserver 2.10.5 installed and configured. All the databases descripted in #10956 are accessible... Andrea Dell'Amico

04:33 PM D4Science Infrastructure VM Creation #11126 (In Progress): Access to a VM with Geoserver v2.10 istance

hostname and IP are going to be: geoserver2-d.dev.d4science.org 146.48.122.252
Andrea Dell'Amico

Feb 07, 2018

08:07 PM D4Science Infrastructure VM Creation #11126: Access to a VM with Geoserver v2.10 istance

What smartgears scopes? Andrea Dell'Amico

08:06 PM D4Science Infrastructure VM Creation #11126: Access to a VM with Geoserver v2.10 istance

Do you also need all the old data?
Andrea Dell'Amico

08:06 PM D4Science Infrastructure Task #10956 (Closed): Clone geoserver.d4science.org

Andrea Dell'Amico

05:05 PM D4Science Infrastructure Task #11055: Do not install ganglia anymore

Added the role again, so that we can purge the packages and the configuration from the hosts.
Removed all the gangli... Andrea Dell'Amico

03:04 PM D4Science Infrastructure VM Creation #11122: Provide new VM for hosting the sdmx-datasource service

Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > The VM is ready.
> >
> > About the smartgears version, th... Andrea Dell'Amico

12:46 PM D4Science Infrastructure VM Creation #11122 (Feedback): Provide new VM for hosting the sdmx-datasource service

The VM is ready.
About the smartgears version, the one installed is `2.2.0-4.10.0-162179` even if I set `latest` ... Andrea Dell'Amico

01:11 PM D4Science Infrastructure Task #11125 (Closed): dataminer instances @garr: set heap to 5 GB

Done. Andrea Dell'Amico

12:50 PM D4Science Infrastructure Task #11125 (In Progress): dataminer instances @garr: set heap to 5 GB

Andrea Dell'Amico

Feb 06, 2018

07:36 PM D4Science Infrastructure VM Creation #11122: Provide new VM for hosting the sdmx-datasource service

The hostname is going to be sdmx-datasource.d4science.org
Andrea Dell'Amico

07:29 PM D4Science Infrastructure VM Creation #11122 (In Progress): Provide new VM for hosting the sdmx-datasource service

Andrea Dell'Amico

06:39 PM D4Science Infrastructure VM Creation #11036: SDI_Lab dedicated GeoServer

@emmanuel.blondel@fao.org you can now access as user `emmanuel.blondel`. The geoserver data directory is /srv/geoserv... Andrea Dell'Amico

04:44 PM D4Science Infrastructure VM Creation #11036: SDI_Lab dedicated GeoServer

Emmanuel Blondel wrote:
> For this Geoserver, https is not yet available apparently... can we get it?
A certifica... Andrea Dell'Amico

Feb 05, 2018

05:47 PM D4Science Infrastructure Task #11106 (Closed): Certificate issue at ckan-d-d4s

It's fixed now. The script that updates the certificate was missing, I don't know why.
Andrea Dell'Amico