D4science

Jul 27, 2016

01:40 PM D4Science Infrastructure Task #4245 (In Progress): Install NetCDF-C on thredds

Netcdf 4.4.0 is required also on thredds.d4science.org, @tommaso.piccioli@isti.cnr.it could you please run the same i... Gianpaolo Coro

Jul 26, 2016

10:47 PM D4Science Infrastructure Incident #4805: SmartGears on dataminer4 fails to save status

Sorry, let me clarify that I opened this ticket because the issue was frequent but random on the development machines... Gianpaolo Coro

09:57 PM D4Science Infrastructure Incident #4805: SmartGears on dataminer4 fails to save status

Andrea and Tommaso have added useful information, but the solution should be provided by Lucio. This is a long-known ... Gianpaolo Coro

07:02 PM D4Science Infrastructure Incident #4805 (Closed): SmartGears on dataminer4 fails to save status

Each time the SmartGears service on dataminer4-p-d4s.d4science.org is shutdown, the status gets corrupted. This mac... Gianpaolo Coro

01:19 PM D4Science Infrastructure Incident #4789 (Resolved): Workspace does not delete Dataminer folder

Gianpaolo Coro

08:49 AM D4Science Infrastructure Incident #4789 (Closed): Workspace does not delete Dataminer folder

When I try to delete the Dataminer folder (or any of its subfolders) in my Workspace, I get this error and nothing ha... Gianpaolo Coro

01:18 PM D4Science Infrastructure Task #4788 (Closed): StatMan and TrendyLyzer web apps substitution

Another cluster of DataMiners was assigned to this VRE. Dataminer works in all the scopes. Thanks. Gianpaolo Coro

08:40 AM D4Science Infrastructure Task #4788: StatMan and TrendyLyzer web apps substitution

The Dataminer proxy Service Endpoint was missing. The portlet works in the Scalable Data Mining VRE. I have assigned ... Gianpaolo Coro

12:14 PM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

OK, everything works correctly. I think we can close this ticket. Gianpaolo Coro

10:17 AM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

Hi Andrea, the "sobigdata" term makes me thrill... :-S
The distribution of the dataminer should be:

~~~
datam... Gianpaolo Coro

08:52 AM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

I have measured that dataminer4 and dataminer6 are slower than the other machines. Is it possible to move them on a b... Gianpaolo Coro

08:42 AM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

I have run complete tests, also on the geoprocessing algorithms. All the dataminers works. Now it's time to implement... Gianpaolo Coro

Jul 25, 2016

08:10 PM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

dataminer [1:2] work. Perhaps, tomorrow I will be able to test the geoprocessing part. If you create the groups of da... Gianpaolo Coro

06:14 PM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

Dataminer 3:6 have been tested on non-geospatial algorithms. I'm waiting for the geospatial infrastructure to be up a... Gianpaolo Coro

08:54 AM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

Yes Andrea, I will fix the 52-North dependencies as soon as I will be back to work on DataMiner.
However, I have c... Gianpaolo Coro

06:13 PM D4Science Infrastructure Upgrade #4785: Is it possible to have an RStudio accessible from the BiodiversityLab VRE?

Yes we can install RStudio in BiodiversityLab. Users will be able to install packages for their own personal working ... Gianpaolo Coro

06:09 PM D4Science Infrastructure Task #4788 (Closed): StatMan and TrendyLyzer web apps substitution

The TrendyLyzer portlet should be removed and the StatMan portlet should be substituted by DataMiner in the following... Gianpaolo Coro

Jul 23, 2016

02:00 AM D4Science Infrastructure Task #4782: Provide ansible playbook for dataminer deployment

The 3:6 services are not running because there are 52North WPS 3.5.0 libraries together with the (required) 3.3.2 lib... Gianpaolo Coro

Jul 21, 2016

06:21 PM D4Science Infrastructure Support #4764: BiodiversityLab - SAI - Impossible to open a project

At each saving step also a consistency check is made. For example, the save button on the parameters does some checks... Gianpaolo Coro

05:39 PM D4Science Infrastructure Incident #4778: Workspace interaction is very slow

i-marine.d4science.org Gianpaolo Coro

04:10 PM D4Science Infrastructure Incident #4778 (Closed): Workspace interaction is very slow

The Workspace requires 2 minutes for a ~100k file upload.
Overall it makes very difficult to use StatMan because ge... Gianpaolo Coro

04:03 PM D4Science Infrastructure Incident #4774: Issues with the WS in the production environment

What is planned to avoid this issue in the future or to be alerted? It was very difficult to understand that it was d... Gianpaolo Coro

03:46 PM D4Science Infrastructure Incident #4774: Issues with the WS in the production environment

The exception has disappeared and this is good.
However, the system is slow (5 strings displayed in half minute). P... Gianpaolo Coro

03:08 PM D4Science Infrastructure Incident #4774: Issues with the WS in the production environment

I'm referring to the BioDiversityLab VRE for the algorithms. We see these errors on the portal: http://paste.research... Gianpaolo Coro

02:47 PM D4Science Infrastructure Incident #4774 (Closed): Issues with the WS in the production environment

It seems that something is wrong with the Workspace. The StatMan computations do not report output anymore and people... Gianpaolo Coro

02:36 PM D4Science Infrastructure Task #2174: Dataminer and Statistical Manager packages

~~~
install.packages("gdata")
~~~ Gianpaolo Coro

Jul 20, 2016

12:45 PM D4Science Infrastructure Support #4764: BiodiversityLab - SAI - Impossible to open a project

Have you solved the issue?
Just as a clarification: After you change something you should save your project as in a ... Gianpaolo Coro

12:19 AM D4Science Infrastructure Support #4764: BiodiversityLab - SAI - Impossible to open a project

Further, do not open take the Workspace and the SAI Web interface opened in two tabs in the browser, because this mix... Gianpaolo Coro

12:16 AM D4Science Infrastructure Support #4764: BiodiversityLab - SAI - Impossible to open a project

Please, try selecting the folder but not double clicking it when you open the project; i.e., do not enter in the fold... Gianpaolo Coro

Jul 19, 2016

11:13 PM D4Science Infrastructure Support #4764: BiodiversityLab - SAI - Impossible to open a project

Hi Emmanuel, the SAI project corresponds to a folder on the Workspace. To see if you saved the project, go to the WS ... Gianpaolo Coro

Jul 18, 2016

12:22 PM D4Science Infrastructure Task #2174: Dataminer and Statistical Manager packages

Postgres and PostGIS clients are required (have been already installed on dataminer1-d):
~~~
apt-get install post... Gianpaolo Coro

Jul 08, 2016

02:38 PM D4Science Infrastructure Task #4670 (Closed): Endow database with PostGis functions

The mpa DB works for our scopes with the installation of Andrea. I close this ticket and maybe you can open another o... Gianpaolo Coro

Jul 07, 2016

01:30 PM D4Science Infrastructure Task #4670 (Closed): Endow database with PostGis functions

The "mpa" database schema should be endowed with PostGis functions on geoserver-dev4.d4science.org.
I have tried ... Gianpaolo Coro

Jul 06, 2016

11:11 PM D4Science Infrastructure Task #2174: Dataminer and Statistical Manager packages

install.packages("httr")
install.packages("XML") Gianpaolo Coro

04:55 PM D4Science Infrastructure Task #2174: Dataminer and Statistical Manager packages

~~~
install.packages("curl")
install.packages("caret")
~~~
Gianpaolo Coro

Jul 05, 2016

03:38 PM D4Science Infrastructure Incident #4404 (Resolved): transfer-library erased

It is solved. Gianpaolo Coro

01:11 PM D4Science Infrastructure Task #4640 (Closed): Dismiss BiOnym apps

The BiOnym applications in the BiOnym VRE do not work anymore and would require fixing by FIN. Unfortunately, these a... Gianpaolo Coro

Jul 01, 2016

05:19 PM D4Science Infrastructure Task #4610 (In Progress): Algorithms installation in D4Science

Gianpaolo Coro

05:11 PM D4Science Infrastructure Task #4610: Algorithms installation in D4Science

The installation package is a zip file available here:
~~~
https://svn.research-infrastructures.eu/public/d4scien... Gianpaolo Coro

05:10 PM D4Science Infrastructure Task #4610 (Closed): Algorithms installation in D4Science

With the passage to Dataminer, an installation script has been developed to add an algorithm to Dataminer after a pub... Gianpaolo Coro