D4science

Apr 15, 2016

11:31 AM D4Science Infrastructure Task #3269 (Closed): Add Gis Resources to /gcube/preprod VO

Roberto Cirillo

11:31 AM D4Science Infrastructure Task #3269 (In Progress): Add Gis Resources to /gcube/preprod VO

Roberto Cirillo

11:28 AM D4Science Infrastructure Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO

The following resource: Database/FishCodesConversion , is not present in /gcube/devsec VO. @gianpaolo.coro@isti.cnr.i... Roberto Cirillo

11:06 AM D4Science Infrastructure Task #3267 (In Progress): Add Statistical RuntimeResource to /gcube/preprod VO

Roberto Cirillo

10:40 AM D4Science Infrastructure Task #3285 (Closed): Provide a portal for /gcube/preprod VO

A new instance of portal is needed for /gcube/preprod VO Roberto Cirillo

Apr 14, 2016

04:55 PM D4Science Infrastructure Task #3267: Add Statistical RuntimeResource to /gcube/preprod VO

There are a lot of resources that aren't defined in the root-vo (/gcube) but they are only defined in the VO scope (/... Roberto Cirillo

11:27 AM D4Science Infrastructure Task #3267 (Closed): Add Statistical RuntimeResource to /gcube/preprod VO

The following resources should be added to /gcube/preprod VO:
~~~
DataStorage/StorageManager VO/VRE StorageManage... Roberto Cirillo

11:39 AM D4Science Infrastructure Task #3269 (Closed): Add Gis Resources to /gcube/preprod VO

The following GIS resources should be added to /gcube/preprod VO
**Service Endpoints**
~~~
Category: Gis - Nam... Roberto Cirillo

Apr 13, 2016

06:16 PM D4Science Infrastructure Task #3202: add statistical resources to gcube/preprod VO

The generic resources with secondary type: "StatisticalManagerAlgorithm" have been correctly added to /gcube/preprod VO Roberto Cirillo

04:56 PM D4Science Infrastructure Task #3202 (In Progress): add statistical resources to gcube/preprod VO

I'm going to write a java tool for adding a set of resource from a scope to another one Roberto Cirillo

11:55 AM D4Science Infrastructure Task #3202 (Paused): add statistical resources to gcube/preprod VO

Roberto Cirillo

03:26 PM D4Science Infrastructure Task #3141: Dismiss EuBrazilOpenBio VO and SpeciesLab VRE

All the containers have been stopped. I think is better to wait a couple of day before delete completely the Vms. If ... Roberto Cirillo

12:02 PM D4Science Infrastructure Task #3141 (In Progress): Dismiss EuBrazilOpenBio VO and SpeciesLab VRE

This is the list of OpenBio VMs:
~~~
node3.p.d4science.research-infrastructures.eu RM, RB
node3.p.d4science.res... Roberto Cirillo

12:13 PM D4Science Infrastructure Task #3243 (Closed): Remove monitoring checks from openBio VMs

All VMs belonging to "OpenBio" VO should be dismissed and all related monitoring check should be removed.
This is ... Roberto Cirillo

Apr 12, 2016

03:12 PM D4Science Infrastructure Task #3202 (In Progress): add statistical resources to gcube/preprod VO

Roberto Cirillo

10:38 AM D4Science Infrastructure Task #3202 (Closed): add statistical resources to gcube/preprod VO

The statistical manager service need a lot of resources for working. All these resources should be added to the /gcub... Roberto Cirillo

10:34 AM D4Science Infrastructure Task #3127 (Closed): Switch statistical-manager-service from "Ecosystem" to "preprod"

Roberto Cirillo

10:34 AM D4Science Infrastructure Task #3127 (In Progress): Switch statistical-manager-service from "Ecosystem" to "preprod"

Roberto Cirillo

Apr 11, 2016

11:09 AM D4Science Infrastructure Task #184: Ganglia monitoring, gCore based category: upgrade the VM running unsupported distributions

I guess, the statistical-manager service deployed in EUBrazilOpenBio Scope could be removed: #3141
Do you agree, @pa... Roberto Cirillo

Apr 07, 2016

03:37 PM D4Science Infrastructure Task #3159 (Closed): Delete whn-manager version from whn-manager war name

In order to improve the nagios monitoring for smartgears containers it's need to remove the whn-manager version from ... Roberto Cirillo

03:25 PM D4Science Infrastructure Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

The problem is not the whn-manager version but the whn-manager deployment. The whn-manager has been deployed with the... Roberto Cirillo

02:42 PM D4Science Infrastructure Task #3157: Improve the nagios check for the Smartgears (not the smart executor ones) nodes

Andrea Dell'Amico wrote:
> The check is now active. The following hosts seems not to be running a smartgear service:... Roberto Cirillo

02:36 PM D4Science Infrastructure Task #3140: Improve nagios checks for gCore container

Andrea Dell'Amico wrote:
> OK, there is one node that's failing the gCore check:
>
> ~~~
> dewn10.madgik.di.uoa.... Roberto Cirillo

Apr 05, 2016

05:14 PM D4Science Infrastructure Task #3127 (Paused): Switch statistical-manager-service from "Ecosystem" to "preprod"

Roberto Cirillo

05:13 PM D4Science Infrastructure Task #3130 (Paused): create a wiki for listening the gcube preprod resources

Roberto Cirillo

05:13 PM D4Science Infrastructure Task #3130 (In Progress): create a wiki for listening the gcube preprod resources

Roberto Cirillo

05:06 PM D4Science Infrastructure Task #850: Investigate a new way for check smartgears container by nagios

When the container is down, this url return an error. So, I think, this url should be better than the standard check ... Roberto Cirillo

04:38 PM D4Science Infrastructure Task #3140: Improve nagios checks for gCore container

In attachment a list of containers where the new check is failing. The smartgears hosts in this list should be equipp... Roberto Cirillo

04:32 PM D4Science Infrastructure Task #3140 (Closed): Improve nagios checks for gCore container

At this time we have a simple nagios check on container port but this check often is not enough.
For example, if a c... Roberto Cirillo

12:24 PM D4Science Infrastructure Task #3133: Install monitoring checks on access.d4science.org

I think we could progressively migrate all checks "port based" to checks "wsdl based" , for every container gCore in... Roberto Cirillo

12:02 PM D4Science Infrastructure Task #3133: Install monitoring checks on access.d4science.org

@lucio.lelii@isti.cnr.it could this solution be generalized for all ghn containers? Roberto Cirillo

11:44 AM D4Science Infrastructure Task #3133: Install monitoring checks on access.d4science.org

Andrea Dell'Amico wrote:
> Munin will be dismissed in a not so distant future, I hope. I'll add the node to the gcor... Roberto Cirillo

10:55 AM D4Science Infrastructure Task #3133 (Closed): Install monitoring checks on access.d4science.org

It's need a standard nagios check on port 8080 and to check the memory usage of this host.
What check do you sugge... Roberto Cirillo

11:58 AM D4Science Infrastructure Task #3132 (Closed): Increase RAM on access.d4science.org VM

The container has been restarted with the following heap configuration:
~~~
-Xms2048M -Xmx4000M
~~~ Roberto Cirillo

10:24 AM D4Science Infrastructure Task #3132: Increase RAM on access.d4science.org VM

If you are ready, you could restart the VM: now it's running in dev environment. After your restart, I'm going to inc... Roberto Cirillo

10:22 AM D4Science Infrastructure Task #3131: Create a suitable R environment on statistical-pre.d4science.org

Andrea Dell'Amico wrote:
> It failed because an old version of R, with locally compiled additional packages was inst... Roberto Cirillo

Apr 04, 2016

06:19 PM D4Science Infrastructure Task #3132 (Closed): Increase RAM on access.d4science.org VM

I've found a
~~~
java.lang.OutOfMemoryError: Java heap space
~~~
on the gCore container that hosts the data-tr... Roberto Cirillo

05:55 PM D4Science Infrastructure Task #3131: Create a suitable R environment on statistical-pre.d4science.org

yes, it does. As described in the parent ticket Roberto Cirillo

05:40 PM D4Science Infrastructure Task #3131 (Closed): Create a suitable R environment on statistical-pre.d4science.org

A new suitable R environment is needed on the following VM:
~~~
statistical-manager-pre.d4science.org
~~~
Th... Roberto Cirillo

05:10 PM D4Science Infrastructure Task #3130 (Closed): create a wiki for listening the gcube preprod resources

The new wiki will be created on the following page:
https://wiki.d4science.org/GCube-Pre-Production_Resources Roberto Cirillo

04:36 PM D4Science Infrastructure Task #3127 (In Progress): Switch statistical-manager-service from "Ecosystem" to "preprod"

Roberto Cirillo

03:19 PM D4Science Infrastructure Task #3127 (Closed): Switch statistical-manager-service from "Ecosystem" to "preprod"

In order to populate the "preprod" VO under the "gcube" infrastructure, the statistical service, hosted on "statistic... Roberto Cirillo

Apr 01, 2016

03:48 PM D4Science Infrastructure Task #1848: Update VREModelerResource.FunctionalityResource

I'm not able to perform this update without a schema and without understand how this resource works. I'm going to ass... Roberto Cirillo

11:40 AM D4Science Infrastructure Task #1848: Update VREModelerResource.FunctionalityResource

Is there a xml schema for "VREModelerResource.FunctionalityResource" resource? Roberto Cirillo

12:00 PM D4Science Infrastructure Task #3109 (Closed): VREModeler: nightly restart

A cronjob should be added for restarting the VREModeler service instances. The service should be restarted every sat... Roberto Cirillo

Mar 31, 2016

12:16 PM D4Science Infrastructure Upgrade #1956 (Invalid): gCubeApps VO upgrade to gCube 3.10.0

Massimiliano Assante wrote:
> @roberto.cirillo@isti.cnr.it i think this ticket can be closed?
Yes, of course. Thi... Roberto Cirillo

Mar 30, 2016

11:03 AM D4Science Infrastructure Support #2134: Enhancing Statistical Manager performance

It's ok for me Roberto Cirillo

Mar 24, 2016

10:37 AM D4Science Infrastructure Upgrade #2461 (Planned): D4Science Infrastructure Upgrade to gCube 3.10.1

Roberto Cirillo

Mar 23, 2016

06:34 PM D4Science Infrastructure Upgrade #2462 (Completed): gCubeApps VO upgrade to gCube 3.10.1

Roberto Cirillo

06:33 PM D4Science Infrastructure Upgrade #2462 (In Progress): gCubeApps VO upgrade to gCube 3.10.1

Roberto Cirillo

06:31 PM D4Science Infrastructure Upgrade #2714 (Completed): D4Science Root VO upgrade to gCube 3.10.1

Roberto Cirillo

06:31 PM D4Science Infrastructure Upgrade #2714 (In Progress): D4Science Root VO upgrade to gCube 3.10.1

Roberto Cirillo

05:25 PM D4Science Infrastructure Task #536 (Feedback): Thredds: tomcat runs as root

The data-transfer service has been installed (under gcube user) and it is running on devsec scope for testing purpose... Roberto Cirillo

04:06 PM D4Science Infrastructure Task #536: Thredds: tomcat runs as root

Could anyone add another user called gcube1 on thredds-p-d4s?
The gcube user is used by tomcat. I think it's better ... Roberto Cirillo

Mar 21, 2016

04:21 PM D4Science Infrastructure Task #2784: nagios, ganglia: add credentials to mongodb checks

Andrea Dell'Amico wrote:
> I see that mongo1 (the arbiter?) now fails for every check.
Yes, mongo1 is the arbiter Roberto Cirillo

03:18 PM D4Science Infrastructure Task #2784: nagios, ganglia: add credentials to mongodb checks

Yes, of course. You can find the credentials on "mongo1-p-d4s.d4science.org" under /root/README. Roberto Cirillo

11:08 AM D4Science Infrastructure Task #2784 (Closed): nagios, ganglia: add credentials to mongodb checks

Since last friday, it's need to be authenticated for performing mongodb checks Roberto Cirillo

12:08 PM D4Science Infrastructure Task #2122 (Closed): enable external and internal authentication on mongodb

Roberto Cirillo

12:08 PM D4Science Infrastructure Task #2122 (In Progress): enable external and internal authentication on mongodb

Roberto Cirillo

12:07 PM D4Science Infrastructure Task #2123 (Closed): Edit the Storage-manager service endpoint

Roberto Cirillo

12:07 PM D4Science Infrastructure Task #2123 (In Progress): Edit the Storage-manager service endpoint

Roberto Cirillo