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Andrea Dell'Amico's activity

From Jan 15, 2016 to Feb 13, 2016

Feb 12, 2016

06:03 PM D4Science Infrastructure Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
And it seems that fluentd can collect the syslog output and feed it to influxdb: http://www.fluentd.org/guides/recipe... Andrea Dell'Amico
05:58 PM D4Science Infrastructure Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
http://www.collectd.org and http://www.fluentd.org can talk with influxdb (and other backends) and seem to offer a wi... Andrea Dell'Amico
05:38 PM D4Science Infrastructure Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
It seems better suited to collect application and system metrics and maybe send alerts based on them. While ELK seems... Andrea Dell'Amico
05:31 PM D4Science Infrastructure Task #2221: Experiment with a new monitoring/metrics tool: influxdata (influxdb)
A preliminar dashboard can be used here: node0-monitoring.research-infrastructures.eu
Beware that there's no authen...
Andrea Dell'Amico
05:55 PM D4Science Infrastructure Task #2110: Please provide new VM with Elastic Search
The IP address is going to be 146.48.123.142
Andrea Dell'Amico
05:30 PM D4Science Infrastructure Task #2110 (In Progress): Please provide new VM with Elastic Search
Is elastic0-d-d4s.d4science.org an acceptable hostname?
Andrea Dell'Amico

Feb 11, 2016

06:16 PM D4Science Infrastructure Task #2221 (In Progress): Experiment with a new monitoring/metrics tool: influxdata (influxdb)
Andrea Dell'Amico
05:45 PM D4Science Infrastructure Task #1450 (Closed): nagios monitoring for the new mongodb production cluster
The nagios check has been adapted.
Andrea Dell'Amico
05:44 PM D4Science Infrastructure Task #2228: Nagios: renamining VM for mongodb nodes
The mongodb check has been fixed.
@tommaso.piccioli@isti.cnr.it tells me that mongo6 is an instance only used when...
Andrea Dell'Amico
03:54 PM D4Science Infrastructure Task #2228: Nagios: renamining VM for mongodb nodes
Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > And now we have some errors and warnings.
>
> The warnings...
Andrea Dell'Amico
02:14 PM D4Science Infrastructure Task #2228: Nagios: renamining VM for mongodb nodes
And now we have some errors and warnings. Andrea Dell'Amico
02:12 PM D4Science Infrastructure Task #2228 (Feedback): Nagios: renamining VM for mongodb nodes
I changed the other hostnames.
Andrea Dell'Amico
01:56 PM D4Science Infrastructure Task #2228 (In Progress): Nagios: renamining VM for mongodb nodes

What about this one?:
~~~
mongo6-p-d4s.d4science.org
#node85.p.d4science.research-infrastructures.eu
~~~
Andrea Dell'Amico

Feb 10, 2016

01:43 PM D4Science Infrastructure Task #2162 (Closed): Change the linux_raid nagios plugin
Changed everywhere.
Andrea Dell'Amico
01:43 PM D4Science Infrastructure Task #2162 (In Progress): Change the linux_raid nagios plugin
Andrea Dell'Amico
12:26 PM D4Science Infrastructure Task #1854: Tool for usage statistics on DataMiner
And influxdata could be even better, see https://support.d4science.org/issues/2221
Andrea Dell'Amico
12:04 PM D4Science Infrastructure Task #2221 (Closed): Experiment with a new monitoring/metrics tool: influxdata (influxdb)
The tool is promising:
* All the components are free software (they sell managed services and consulting)
* Can d...
Andrea Dell'Amico
11:56 AM D4Science Infrastructure Task #2165 (Feedback): Please Remove authentication token from gcube wiki
Andrea Dell'Amico
11:56 AM D4Science Infrastructure Task #2165 (In Progress): Please Remove authentication token from gcube wiki
Yesterday we saw that to get rid of the token requirement implies heavy changes to the mediawiki sources. I don't thi... Andrea Dell'Amico
11:54 AM D4Science Infrastructure Task #2178 (Closed): Replace the cm.research-infrastructures.eu ssh key
The new key has been generated. A run of the `common` ansible playbook is needed to have it provisioned on the VMs.
Andrea Dell'Amico
11:52 AM D4Science Infrastructure Task #2220 (Closed): Configure the provisioned smartgears nodes with a web proxy in front of them
The goal is to only expose ports 80 or 443 (hopefully 443 only in the near future).
Andrea Dell'Amico

Feb 09, 2016

07:38 PM D4Science Infrastructure Task #2192 (Feedback): Gcc and boost installation
For the record, the installed tool comes from this git repository: `http://quickrank.isti.cnr.it/?page_id=11` and it ... Andrea Dell'Amico
07:32 PM D4Science Infrastructure Task #2192: Gcc and boost installation
I've found out that there's a repo for newer versions of the gcc tools. With g++4.8 (and a modification to the makefi... Andrea Dell'Amico
07:18 PM D4Science Infrastructure Task #2192: Gcc and boost installation
No, there's a repo for boost 1.55. I'm going to install it, then I'll download and try to compile the quickrank packa... Andrea Dell'Amico
06:54 PM D4Science Infrastructure Task #2192 (In Progress): Gcc and boost installation
Ubuntu precise is too old to satisfy your requirements. On Ubuntu 12.04 gcc 4.6 and boost 1.46 are available.
Andrea Dell'Amico
05:55 PM D4Science Infrastructure Task #2193 (Closed): Nagios check for the Dataminer service
They are working.
Andrea Dell'Amico
05:49 PM D4Science Infrastructure Task #2193 (Feedback): Nagios check for the Dataminer service
The checks are pending.
Andrea Dell'Amico
05:39 PM D4Science Infrastructure Task #2193 (In Progress): Nagios check for the Dataminer service
Andrea Dell'Amico
05:27 PM D4Science Infrastructure Task #2193 (Closed): Nagios check for the Dataminer service
The URL: `http://dataminer.d4science.org/wps/WebProcessingService?Request=GetCapabilities&Service=WPS&gcube-token=<VA... Andrea Dell'Amico
05:24 PM D4Science Infrastructure Task #2190 (Closed): ic-proxy service should be monitored by nagios
Andrea Dell'Amico
05:10 PM D4Science Infrastructure Task #2190 (Feedback): ic-proxy service should be monitored by nagios
Done, waiting for the first check result to appear.
Andrea Dell'Amico
04:44 PM D4Science Infrastructure Task #2190 (In Progress): ic-proxy service should be monitored by nagios
Andrea Dell'Amico
03:37 PM D4Science Infrastructure Task #2190: ic-proxy service should be monitored by nagios
Can you provide a functional URL? that way a single check can cover the nginx, tomcat and service status.
Andrea Dell'Amico
02:00 PM D4Science Infrastructure Task #2181 (Feedback): Enable ganglia monitoring on mongodb nodes in dev environment
The ganglia cluster is up: http://monitoring.research-infrastructures.eu/ganglia/?c=D4science%20MongoDB%20DEV%20clust... Andrea Dell'Amico
01:54 PM D4Science Infrastructure Task #2181: Enable ganglia monitoring on mongodb nodes in dev environment
I see that mongo0-d-d4s.d4science.org does not exist as a hostname.
Andrea Dell'Amico
01:48 PM D4Science Infrastructure Task #2181: Enable ganglia monitoring on mongodb nodes in dev environment
The ansible inventory lists
~~~
mongo0-d-d4s.d4science.org
mongo5-d-d4s.d4science.org
~~~
What's the correc...
Andrea Dell'Amico
01:46 PM D4Science Infrastructure Task #2181 (In Progress): Enable ganglia monitoring on mongodb nodes in dev environment
Andrea Dell'Amico
01:38 PM D4Science Infrastructure Task #2178: Replace the cm.research-infrastructures.eu ssh key
Changed the xen-tools configuration on all the hypervisors.
Andrea Dell'Amico

Feb 08, 2016

07:41 PM D4Science Infrastructure Task #2178: Replace the cm.research-infrastructures.eu ssh key
The new key should be only distributed via ansible and not provided on the new VMs by default. So only the already pr... Andrea Dell'Amico
07:39 PM D4Science Infrastructure Task #2178 (Closed): Replace the cm.research-infrastructures.eu ssh key
Change it with a new one, because only Marko knew the passphrase but he doesn't remember it anymore.
The key must ...
Andrea Dell'Amico
05:01 PM D4Science Infrastructure Support #2090 (Closed): Upgrade R in d4science plateform to last version
Andrea Dell'Amico
04:26 PM D4Science Infrastructure Support #2090: Upgrade R in d4science plateform to last version
Installed that one too.
Andrea Dell'Amico
05:01 PM D4Science Infrastructure Task #2175 (Closed): Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org
On a Ubuntu 10.04.
Investigate if tomcat can run as an unprivileged user, too.
The R packages list and version is...
Andrea Dell'Amico
11:51 AM D4Science Infrastructure Task #2168 (Closed): Please upgrade disk quota on couchdb01-d-d4s.d4science.org and ouchdb02-d-d4s.d4science.org
Andrea Dell'Amico
11:50 AM D4Science Infrastructure Task #2168 (In Progress): Please upgrade disk quota on couchdb01-d-d4s.d4science.org and ouchdb02-d-d4s.d4science.org
I incremented the disk size of all the couchdb instances. The culprit are the couchdb and upstart log files.
The cou...
Andrea Dell'Amico

Feb 06, 2016

12:27 PM D4Science Infrastructure Task #2165: Please Remove authentication token from gcube wiki
Luca Frosini wrote:
> Unfortunately I don't know, but I'll take a look on the web
If you don't know already, I'll...
Andrea Dell'Amico
12:37 AM D4Science Infrastructure Task #2165: Please Remove authentication token from gcube wiki
Do you know if there's a configuration option for the mediawiki ldap plugin or do I have to do a research?
Andrea Dell'Amico

Feb 05, 2016

03:28 PM D4Science Infrastructure Task #2162 (Closed): Change the linux_raid nagios plugin
The actual one does not understand when a volume is resyncing.
Andrea Dell'Amico

Feb 04, 2016

03:15 PM D4Science Infrastructure Task #2106 (Feedback): Install Joomla for the new PUMA portal
Andrea Dell'Amico

Feb 03, 2016

04:42 PM D4Science Infrastructure Task #1417 (Closed): Add Cron Job to make "Redmine Issue Reminder plugin" working
I'm disabling it for the time being.
Andrea Dell'Amico
04:38 PM D4Science Infrastructure Support #2090 (Feedback): Upgrade R in d4science plateform to last version
rstudio.d4science.org now runs R version 3.2.3. All the packages listed by Gianpaolo have been installed.
Andrea Dell'Amico

Feb 02, 2016

05:55 PM D4Science Infrastructure Task #2106: Install Joomla for the new PUMA portal
Done.
I did not understand from the documentation if it's possibile to configure memcached as the session cache. You...
Andrea Dell'Amico
02:35 PM D4Science Infrastructure Task #2106 (In Progress): Install Joomla for the new PUMA portal
There is no deb package for the php solr plugin. I find references to this one: https://code.google.com/archive/p/so... Andrea Dell'Amico
12:41 PM D4Science Infrastructure Support #2090 (In Progress): Upgrade R in d4science plateform to last version
I can start working on it tomorrow morning, is it OK? Andrea Dell'Amico

Jan 27, 2016

06:27 PM D4Science Infrastructure Task #2041 (Closed): Change the portal's postfix configuration to point to the internal SMTP relay
Andrea Dell'Amico
06:11 PM D4Science Infrastructure Task #1347 (Closed): Modify the gcube-system wiki configuration to give write access to the bluebridge group
Andrea Dell'Amico

Jan 26, 2016

06:42 PM D4Science Infrastructure Task #1347: Modify the gcube-system wiki configuration to give write access to the bluebridge group
And here is the modified LdapAuthentication.php Andrea Dell'Amico
06:34 PM D4Science Infrastructure Task #1347 (Feedback): Modify the gcube-system wiki configuration to give write access to the bluebridge group
The d4science wiki too.
Andrea Dell'Amico
06:23 PM D4Science Infrastructure Task #1347: Modify the gcube-system wiki configuration to give write access to the bluebridge group
The Gcube wiki is now authenticating against the new ldap server only.
Andrea Dell'Amico
06:10 PM D4Science Infrastructure Task #1347: Modify the gcube-system wiki configuration to give write access to the bluebridge group
I spoke with @luca.frosini@isti.cnr.it and he said to proceed using the email as username. I'll post a diff of the mo... Andrea Dell'Amico
04:47 PM D4Science Infrastructure Task #1347: Modify the gcube-system wiki configuration to give write access to the bluebridge group
I've found that to be able to login using the email address and set the correct user's group at the same time is poss... Andrea Dell'Amico
02:27 PM D4Science Infrastructure Task #1702 (Closed): Export LDAP groups to Redmine and populate them
Andrea Dell'Amico

Jan 25, 2016

06:54 PM D4Science Infrastructure Task #1347 (In Progress): Modify the gcube-system wiki configuration to give write access to the bluebridge group
I'm going to make the change tomorrow morning.
Andrea Dell'Amico

Jan 22, 2016

05:14 PM D4Science Infrastructure Task #2052 (Closed): Add a new ganglia cluster to monitor the D4Science portals
Done. Andrea Dell'Amico
04:30 PM D4Science Infrastructure Task #2052: Add a new ganglia cluster to monitor the D4Science portals
The playbook is ready to be deployed. Andrea Dell'Amico
03:09 PM D4Science Infrastructure Task #2052 (In Progress): Add a new ganglia cluster to monitor the D4Science portals
Andrea Dell'Amico
03:08 PM D4Science Infrastructure Task #2052 (Closed): Add a new ganglia cluster to monitor the D4Science portals
Cluster members will be the five production and pre-production portal servers. Andrea Dell'Amico
05:14 PM D4Science Infrastructure Task #2041 (Feedback): Change the portal's postfix configuration to point to the internal SMTP relay
Done.
I also added general iptables rules that expose only the ssh, http and https ports to the world and the 9090...
Andrea Dell'Amico
04:28 PM D4Science Infrastructure Task #2041: Change the portal's postfix configuration to point to the internal SMTP relay
Testing the configuration on preprod.d4science.org, right now.
Andrea Dell'Amico
03:09 PM D4Science Infrastructure Task #2041 (In Progress): Change the portal's postfix configuration to point to the internal SMTP relay
Andrea Dell'Amico
03:06 PM D4Science Infrastructure Task #2041: Change the portal's postfix configuration to point to the internal SMTP relay
~~~
i-marine.d4science.org: Ubuntu 11.04
services.d4science.org: Ubuntu 11.04
egip.d4science.org: Ubuntu 12.04
de...
Andrea Dell'Amico
04:00 PM D4Science Infrastructure Task #1347: Modify the gcube-system wiki configuration to give write access to the bluebridge group
Luca Frosini wrote:
> Thank to the VRE user export functionality is now possible to automatically retrieve the users...
Andrea Dell'Amico
12:15 PM D4Science Infrastructure Task #1609 (Closed): Change the Redmine LDAP Configuration dn for users
Andrea Dell'Amico

Jan 21, 2016

07:26 PM D4Science Infrastructure Task #1702 (Feedback): Export LDAP groups to Redmine and populate them
Step #5 completed Andrea Dell'Amico
07:25 PM D4Science Infrastructure Task #1609 (Feedback): Change the Redmine LDAP Configuration dn for users
Andrea Dell'Amico
07:25 PM D4Science Infrastructure Task #1609 (In Progress): Change the Redmine LDAP Configuration dn for users
Done. redmine now correctly syncs with the new ldap hierarchy.
Andrea Dell'Amico
07:24 PM D4Science Infrastructure Task #1347: Modify the gcube-system wiki configuration to give write access to the bluebridge group
Now that we have groups on the new ldap server we can exploit them for the wiki permissions too? Andrea Dell'Amico
05:58 PM D4Science Infrastructure Task #2041 (Closed): Change the portal's postfix configuration to point to the internal SMTP relay
The hosts list:
~~~
i-marine.d4science.org
services.d4science.org
egip.d4science.org
descramble.d4science.org
...
Andrea Dell'Amico
04:47 PM D4Science Infrastructure Task #2035 (Closed): Remove "node3.d4science.org" host from smart-executor ansible playbook
Done. Andrea Dell'Amico
04:46 PM D4Science Infrastructure Support #2038 (Feedback): Install couchdb-cache-se-plugin on node3 via ansible
Andrea Dell'Amico
04:46 PM D4Science Infrastructure Support #2038 (In Progress): Install couchdb-cache-se-plugin on node3 via ansible
Done.
The general smartgears playbook has been reworked to give the possibility to install any smart-executor plugin...
Andrea Dell'Amico

Jan 20, 2016

05:06 PM D4Science Infrastructure Support #119 (Closed): add new nagios check on bionym.d4science.org
They are working.
Andrea Dell'Amico
05:05 PM D4Science Infrastructure Support #119 (Feedback): add new nagios check on bionym.d4science.org
Added a check for each URL.
Andrea Dell'Amico
04:06 PM D4Science Infrastructure Support #119: add new nagios check on bionym.d4science.org
Andrea Dell'Amico wrote:
> Can you provide a URL to test that the application is working? A wsdl perhaps?
@robert...
Andrea Dell'Amico
04:05 PM D4Science Infrastructure Task #844 (Closed): Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"
Andrea Dell'Amico
11:42 AM D4Science Infrastructure Task #844: Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"
Gianpaolo Coro wrote:
> The application works on that link. If it is not available sometimes it's because they are w...
Andrea Dell'Amico
04:04 PM D4Science Infrastructure Task #1854: Tool for usage statistics on DataMiner
I see that piwik can also ingest log files, so it's the best candidate: it's more modern and more powerful.
Andrea Dell'Amico
04:02 PM D4Science Infrastructure Task #2017 (Closed): Secure sp.d4science.org
tomcat answers to the 8080 port without restrictions.
It should be better to disable the http port altogether, I see...
Andrea Dell'Amico
04:00 PM D4Science Infrastructure Task #1702: Export LDAP groups to Redmine and populate them
Massimiliano Assante wrote:
> I did try that, and Indeed I confirm the one you suspected is the actual reason.
>
...
Andrea Dell'Amico
03:44 PM D4Science Infrastructure Task #1702: Export LDAP groups to Redmine and populate them
You can test changing the configuration of one of them. At the next synch it should appear in the group.
We'll hav...
Andrea Dell'Amico
03:30 PM D4Science Infrastructure Task #1702: Export LDAP groups to Redmine and populate them
Can you list those users? I suspect that they also exist with the same email address in the old ldap server and they ... Andrea Dell'Amico
03:57 PM D4Science Infrastructure Task #472: Move the VMs from the 'OpenStack servers' to the new hypervisor
See https://support.d4science.org/issues/471 for the list of server nodes that need to be freed. Andrea Dell'Amico
03:56 PM D4Science Infrastructure Task #471: Locate the hypervisors to dedicate to OpenStack
From dlib14x to dlib17x? is it OK?
Andrea Dell'Amico
03:51 PM D4Science Infrastructure Task #1417: Add Cron Job to make "Redmine Issue Reminder plugin" working
Any news on this one?
Andrea Dell'Amico
03:47 PM D4Science Infrastructure Task #150 (Closed): Add nagios check for sp.d4science.org tomcat
Andrea Dell'Amico
03:46 PM D4Science Infrastructure Task #1958 (Closed): thredds.d4science.org: add Nagios check on ghn
Andrea Dell'Amico

Jan 19, 2016

08:36 PM D4Science Infrastructure Task #1127 (Feedback): Add cotrix.d4science.org to the nagios monitoring
Andrea Dell'Amico
08:36 PM D4Science Infrastructure Task #1127 (In Progress): Add cotrix.d4science.org to the nagios monitoring
Done.
Note that the ajp (8009) and 8080 ports are open to the world. They should be disabled if not used.
Andrea Dell'Amico
08:28 PM D4Science Infrastructure Task #1909 (Closed): Access to svn and gCube wiki
Andrea Dell'Amico
08:24 PM D4Science Infrastructure Support #1325 (Closed): rstudio.d4science.org: add nagios check
The check was in place already. Andrea Dell'Amico
08:22 PM D4Science Infrastructure Task #844: Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"
Roberto Cirillo wrote:

> ~~~
> http://statbase1.smartfish.d4science.org/statbase/StartPage.action?request_locale...
Andrea Dell'Amico
08:01 PM D4Science Infrastructure Task #844 (Feedback): Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"
Andrea Dell'Amico
08:01 PM D4Science Infrastructure Task #844 (In Progress): Provide nagios checks for webapp running on "statbase1.smartfish.d4science.org"
Done.
Andrea Dell'Amico
08:07 PM D4Science Infrastructure Task #1958 (Feedback): thredds.d4science.org: add Nagios check on ghn
Andrea Dell'Amico
08:07 PM D4Science Infrastructure Task #1958 (In Progress): thredds.d4science.org: add Nagios check on ghn
Done.
Note that the server has the ajp port open to the world, and the bluethoot service running (?).
Andrea Dell'Amico
07:55 PM D4Science Infrastructure Task #150 (Feedback): Add nagios check for sp.d4science.org tomcat
I added the check.
The certificate expiration date is also checked.
Note that tomcat answers to the 8080 port wit...
Andrea Dell'Amico
07:42 PM D4Science Infrastructure Task #149 (Feedback): Add nagios check for www.d4science.org and www.gcube-system.org websites
Done. The certificate expiration date is also checked.
Andrea Dell'Amico
07:41 PM D4Science Infrastructure Task #149 (In Progress): Add nagios check for www.d4science.org and www.gcube-system.org websites
Andrea Dell'Amico
07:23 PM D4Science Infrastructure Support #119 (In Progress): add new nagios check on bionym.d4science.org
Can you provide a URL to test that the application is working? A wsdl perhaps?
Andrea Dell'Amico
 

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