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From Oct 02, 2016 to Oct 31, 2016

Oct 31, 2016

06:33 PM Task #2220 (Closed): Configure the provisioned smartgears nodes with a web proxy in front of them
nginx with https is now the default when using the ansible playbooks.
 Andrea Dell'Amico
06:31 PM Task #205 (Feedback): Automate the installation and configuration of the geonetwork servers
We only need the completion of #5508. Andrea Dell'Amico
06:27 PM Task #5546 (Closed): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
The new profile is available to all the existing users and it will be installed to the new ones.
 Andrea Dell'Amico
06:26 PM Task #3070 (Closed): Provide a way of starting and stopping a list of VMs by some users
Services have evolved in a different way. Not needed anymore.
 Andrea Dell'Amico
06:08 PM Task #5595 (Feedback): Provide a new VM for a smart-executor instance
The VM is up and you have root access to it.
I've updated the ansible inventory and created the group:
~~~
[sm... Andrea Dell'Amico
05:26 PM Task #5595 (In Progress): Provide a new VM for a smart-executor instance
hostname and IP will be: social-indexer.d4science.org 146.48.122.33
 Andrea Dell'Amico
06:07 PM Task #5596 (Feedback): Provide a new VM for a smart-executor instance
The VM is up and you have root access to it.
I've updated the ansible inventory and created the group:
~~~
[sm... Andrea Dell'Amico
05:25 PM Task #5596 (In Progress): Provide a new VM for a smart-executor instance
hostname and IP will be: accounting-aggregator.d4science.org 146.48.122.24
 Andrea Dell'Amico
05:57 PM Task #5601 (Closed): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
Kostas Kakaletris wrote:
> You can add checks for the new elastic search cluster (index nodes). You had tests for th... Andrea Dell'Amico
05:04 PM Task #5601: Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
You can add checks for the new elastic search cluster (index nodes). You had tests for the previous elastic search so... Kostas Kakaletris
04:35 PM Task #5601: Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
Done.
We are testing the smartgears wsdl as the availability check. If you have more specific URLs for the various ... Andrea Dell'Amico
04:26 PM Task #5601 (In Progress): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
Andrea Dell'Amico
12:24 PM Task #5601 (Closed): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
The following changes took place in NKUA's infrastructure, after gcube 4.1.0 upgrade, and related changes should be d... Kostas Kakaletris
04:53 PM Task #5590: DataMiner as Generic Worker
One more question: can I have the list of scopes where those servers will be available?
 Andrea Dell'Amico

Oct 29, 2016

11:23 AM Task #5353: Database + endpoint needed
- 88.197.53.20 is the ip of the VM that is hosting the pre-production gcube service
- 88.197.53.37 is the ip of the ... Kostas Kakaletris

Oct 28, 2016

05:49 PM Task #5353: Database + endpoint needed
This one should be the actual java service, managed by @k.kakaletris@cite.gr Denis Pyriochos
03:42 PM Task #5353: Database + endpoint needed
I've also seen accesses coming from 88.197.53.20. I added both the IPs to the postgresql ACLs.
 Andrea Dell'Amico
03:38 PM Task #5353: Database + endpoint needed
Yes. I just checked and it has access to all three databases: SimulFishGrowth, SimulFishGrowth_pre, SimulFishGrowth_prod Denis Pyriochos
10:51 AM Task #5353: Database + endpoint needed
Denis Pyriochos wrote:
> this is the only static ip accessing the database.
Is this valid for the dev and prepro... Andrea Dell'Amico
10:25 AM Task #5353 (Closed): Database + endpoint needed
@andrea.dellamico@isti.cnr.it this is the only static ip accessing the database. Denis Pyriochos
10:16 AM Task #5353: Database + endpoint needed
The service endpoint is in place Roberto Cirillo
09:27 AM Task #5353 (Feedback): Database + endpoint needed
Denis Pyriochos wrote:
> Also, I get the error
>
> 10:11:43 PM: Error: FATAL: no pg_hba.conf entry for host ... Andrea Dell'Amico
05:43 PM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Hi, I checked here and there but there seems not to be any way to set a system property from within the web.xml, the ... Marco Cornolti
04:05 PM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Andrea Dell'Amico wrote:
> Marco Cornolti wrote:
> > Hi! I fixed this yesterday and replied via e-mail but it was n... Andrea Dell'Amico
10:39 AM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Marco Cornolti wrote:
> Hi! I fixed this yesterday and replied via e-mail but it was not added here, dunno why. Re-s... Andrea Dell'Amico
10:25 AM Incident #5589 (Closed): The tagme webapp doesn't work anymore after the smartgears ugprade
Marco Cornolti
10:24 AM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
Hi! I fixed this yesterday and replied via e-mail but it was not added here, dunno why. Re-sending.
It seems that ... Marco Cornolti
09:40 AM Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
This problem was fixed (by @cornolti@di.unipi.it ?) but there's a new one impacting the service.
 Andrea Dell'Amico
05:11 PM Task #5590: DataMiner as Generic Worker
The expanded list of generic workers that will be terminated:
~~~
node3.d4science.org
node11.d4science.org
node... Andrea Dell'Amico
02:17 PM Task #5590: DataMiner as Generic Worker
Yes to all. Gianpaolo Coro
02:15 PM Task #5590: DataMiner as Generic Worker
So, 3GB of ram, 2 CPUs, 12 GBs of disk (but I'll make them bigger, the R packages and dataminer occupy a lot of space... Andrea Dell'Amico
04:52 PM Task #5139 (Closed): New VM for hosting a new istance of tabulardata service
Tabular service has been deployed on FARM vo and WECAFC-FIRMS vre Roberto Cirillo
03:38 PM Task #5139 (Feedback): New VM for hosting a new istance of tabulardata service
Provisioned with nginx and https (optional).
The DB creation was also automated.
 Andrea Dell'Amico
01:06 PM Task #5139: New VM for hosting a new istance of tabulardata service
I'm going to upgrade the container to the last smartgears version Roberto Cirillo
12:53 PM Task #5139: New VM for hosting a new istance of tabulardata service
Please update this activity since it is opened one month ago and it was accepted as urgent. Pasquale Pagano
04:45 PM Incident #5591 (Closed): The new authorization service stops responding
We have increased the possible connection from auhtorization to DB and modified the authorization service to avoid bl... Lucio Lelii
10:30 AM Incident #5591: The new authorization service stops responding
Hi, I have updated (solved) Incident #5589 but I do not believe the two issues are related, except from the fact that... Marco Cornolti
09:42 AM Incident #5591: The new authorization service stops responding
There is no out of memory or other symptom of resource exhaustion on the servers.
 Andrea Dell'Amico
09:38 AM Incident #5591 (Closed): The new authorization service stops responding
It seems that the authorization service is not able to handle the amount of requests that come from the tagme service... Andrea Dell'Amico
04:43 PM Task #5596 (Closed): Provide a new VM for a smart-executor instance
The new VM should have the standard resources used for smart-executor instances and a more specific hostname.
The sm... Roberto Cirillo
04:23 PM Task #5594: nagios checks for the new authorization service
you can use:
http://authorization.d4science.org/authorization-service/gcube/service/token/{guest-token} Lucio Lelii
03:58 PM Task #5594: nagios checks for the new authorization service
@lucio.lelii@isti.cnr.it can you provide an URL to check if the application is working correctly?
 Andrea Dell'Amico
03:56 PM Task #5594 (Closed): nagios checks for the new authorization service
Need to check postgresql and the authorization webapp Andrea Dell'Amico
04:21 PM Task #5595 (Closed): Provide a new VM for a smart-executor instance
The new VM should have the standard resources used for smart-executor instances and a more specific hostname.
The sm... Roberto Cirillo
03:54 PM Task #5592 (Closed): Remove old nagios check
Andrea Dell'Amico
01:30 PM Task #5592 (Feedback): Remove old nagios check
Done. Removed from the DNS, too.
The image disks are still on dlib21x and dlib23x. Can be removed?
 Andrea Dell'Amico
01:17 PM Task #5592 (In Progress): Remove old nagios check
Andrea Dell'Amico
12:34 PM Task #5592: Remove old nagios check
The containers have been stopped and the VMs above can be dismissed. Roberto Cirillo
12:33 PM Task #5592 (Closed): Remove old nagios check
The following nodes belonging to the old preprod (Ecosystem) should be removed from nagios:
~~~
node20.p.d4scienc... Roberto Cirillo
03:08 PM Task #4414: New server for the Broker Service
The following services should be accessible only from the ISTI network:
* Tomcat (port 8080)
* ElasticSearch (920... Michele Artini
12:02 PM Task #1279 (Closed): Use HTTPS for CouchDB dev instances
Luca Frosini
12:02 PM Task #1278 (Closed): Use HTTPS for CouchDB production instances
Luca Frosini
12:02 PM Task #1265 (Closed): Limit HTTP Method on accounting-d-d4s.d4science.org
Luca Frosini
12:02 PM Task #362 (Closed): Limit HTTP Method on accounting-d4s.d4science.org
Luca Frosini
11:51 AM Task #5584 (Closed): Please upgrade resource-registry
Thanks for yr support Luca Frosini
11:50 AM Task #323 (Closed): Install couchdb 2.0 with fauxton
Couchdb is going to be abandoned. So that this ticket can be closed. Luca Frosini
10:38 AM Task #5397 (Closed): Endpoint access - SimulFishGrowthData
Denis Pyriochos
10:38 AM Task #5398 (Closed): Endpoint access - SimulFishGrowthData
Denis Pyriochos
10:37 AM Task #5396 (Closed): Endpoint access - SimulFishGrowthData
Denis Pyriochos
10:33 AM Task #5384 (Closed): Endpoint access - SimulFishGrowth
production done at #5353 Denis Pyriochos
10:33 AM Task #5386 (Closed): Endpoint access - SimulFishGrowth
production done at #5353 Denis Pyriochos
10:32 AM Task #5385 (Closed): Endpoint access - SimulFishGrowth
production done at #5353 Denis Pyriochos
10:07 AM Task #5451 (Closed): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
Andrea Dell'Amico
09:58 AM Task #4371 (Closed): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Script and cron jobs have been installed on all the dataminer servers.
 Andrea Dell'Amico
09:45 AM Task #2175 (Closed): Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org
Completed a long time ago. Andrea Dell'Amico

Oct 27, 2016

09:14 PM Task #5353: Database + endpoint needed
Also, I get the error
10:11:43 PM: Error: FATAL: no pg_hba.conf entry for host "193.92.78.53", user "sfguser"... Denis Pyriochos
09:10 PM Task #5353 (In Progress): Database + endpoint needed
we also need an database endpoint named **SimulFishGrowth**, pointing to this database and accessible from the scopes... Denis Pyriochos
08:04 PM Task #5353 (Feedback): Database + endpoint needed
I've just created the db named `SimulFishGrowth_prod`. You can access it with the same user and password of the other... Andrea Dell'Amico
07:24 PM Task #5353: Database + endpoint needed
We need the same for Production as well. Denis Pyriochos
08:28 PM Task #205: Automate the installation and configuration of the geonetwork servers
The basic services are covered by the provisioning. The last missing part is the geonetwork app.
 Andrea Dell'Amico
06:48 PM Task #5590: DataMiner as Generic Worker
yes! Gianpaolo Coro
06:42 PM Task #5590: DataMiner as Generic Worker
Can you confirm that these are the VMs that we can destroy?
~~~
node3.d4science.org
node[11:13].d4science.org
n... Andrea Dell'Amico
06:37 PM Task #5590: DataMiner as Generic Worker
Gianpaolo Coro wrote:
>
> ~~~
> dataminer.genericworkers.d4science.org
> ~~~
dataminer-genericworkers.d4sci... Andrea Dell'Amico
06:32 PM Task #5590 (Closed): DataMiner as Generic Worker
DataMiner should substitute the Generic Workers already from r4.1.0. The old GW should be shutdown. Three DataMiner a... Gianpaolo Coro
06:30 PM Incident #5589 (Closed): The tagme webapp doesn't work anymore after the smartgears ugprade
Tagme is not working after the upgrade to the new smartegears 2. On the smartgears front all is working correctly, bu... Andrea Dell'Amico
06:29 PM Task #5588 (Closed): VM smartforms.d4science.org can be dismissed
Massimiliano Assante
06:25 PM Task #5588 (Feedback): VM smartforms.d4science.org can be dismissed
Andrea Dell'Amico
06:24 PM Task #5588 (In Progress): VM smartforms.d4science.org can be dismissed
Powered off. Disks and configuration are still available on dlib27x.dom0.research-infrastructures.eu
 Andrea Dell'Amico
05:43 PM Task #5588 (Closed): VM smartforms.d4science.org can be dismissed
along with all its content as the project between Extra and FAO was canceled. Massimiliano Assante
06:12 PM Task #4842 (Closed): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
Andrea Dell'Amico
06:11 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
I cleaned up all the local users. Now all the users authenticate against ldap.
 Andrea Dell'Amico
04:58 PM Task #1112 (Closed): Cotrix Portlet undeployment
not sure if the cotrix.d4science.org was destroyed, but if it wasn't already please do. Massimiliano Assante
04:50 PM Incident #5587 (Closed): Broken apt package repositories on node65.d4science.org
Automatic package deployment failed on that node because there were broken source repositories defined:
~~~
W: Fa... Andrea Dell'Amico
04:35 PM Task #5586 (Closed): nagios check on node76.p.d4science.research-infrastructures.eu (JackRabbit): from tomcat to smartgears
Done.
 Andrea Dell'Amico
12:11 PM Task #5586 (Closed): nagios check on node76.p.d4science.research-infrastructures.eu (JackRabbit): from tomcat to smartgears
In release 4.1, the jackRabbit's webapp has become a smartgears service. For this reason it's need to change the chec... Roberto Cirillo
04:35 PM Task #5568 (Closed): Please Update orientdb version to 2.2.12
thanks a lot Luca Frosini
04:08 PM Task #5568 (Feedback): Please Update orientdb version to 2.2.12

OK, I adjusted the task that removes the old hooks.
 Andrea Dell'Amico
01:55 PM Task #5568: Please Update orientdb version to 2.2.12
This playbook is launched to upgrade orient or the hook. In both cases orientdb must be restarted to have effect.
Mo... Luca Frosini
12:49 PM Task #5568: Please Update orientdb version to 2.2.12
Luca Frosini wrote:
> I thought about this proposal but it is difficult to keep aligned.
> Can we remove all files ... Andrea Dell'Amico
10:12 AM Task #5568: Please Update orientdb version to 2.2.12
I thought about this proposal but it is difficult to keep aligned.
Can we remove all files matching resource-registr... Luca Frosini
04:17 PM Upgrade #5082 (Completed): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
12:31 PM Upgrade #5082 (In Progress): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
12:30 PM Upgrade #5082 (Planned): D4Science Gateways upgrade to gCube 4.1
Massimiliano Assante
04:16 PM Upgrade #5083 (Completed): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
03:40 PM Task #5551 (In Progress): Produce Release Notes for gCube 4.1.0
thank you @laskarisn@di.uoa.gr I'm assigning the ticket to @gabriele.giammatteo@eng.it that will publish the notes Massimiliano Assante
10:43 AM Task #5551: Produce Release Notes for gCube 4.1.0
Please, find the news of 4.1.0 release on the following link:
goo.gl/gn8HGy
 Nikolas Laskaris
12:56 PM Task #5584 (Feedback): Please upgrade resource-registry
When upgrading you need to pass an additional variable to the play, so that the old webapp will be removed:
~~~
-... Andrea Dell'Amico
10:42 AM Task #5584 (Closed): Please upgrade resource-registry
The new version is:
*resource-registry-1.2.0-20161027.082258-5.war*
I already upgraded the version on ansible scr... Luca Frosini
12:34 PM Task #5531 (Closed): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
Done. Andrea Dell'Amico
11:06 AM Task #5531: mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
this morning infra-gateway1 is down, could you perform the operation within midday today? Massimiliano Assante
12:21 PM Upgrade #5077 (Planned): FARM VO upgrade to gCube 4.1
Roberto Cirillo
11:57 AM Task #5508 (Feedback): new Geonetwork instance
Fabio Sinibaldi wrote:
> The DBMS needs to be postgis enabled.
They are installed already. postgresql 9.5, postgi... Andrea Dell'Amico
11:01 AM Task #5508: new Geonetwork instance
The DBMS needs to be postgis enabled.
About scopes, the production root /d4science.research-infrastructures.eu is en... Fabio Sinibaldi
09:33 AM Upgrade #5079 (Completed): /gcube/preprod upgrade to gCube 4.1.0
Roberto Cirillo
09:32 AM Task #5566 (Closed): Create new ServiceEndpoint for storage manager library
Roberto Cirillo
09:32 AM Task #5566 (In Progress): Create new ServiceEndpoint for storage manager library
Roberto Cirillo

Oct 26, 2016

08:08 PM Task #5508: new Geonetwork instance
The node is up. The postgres credentials are the same of the *new* dev DB.
The missing parts are a working smartge... Andrea Dell'Amico
07:32 PM Task #5508: new Geonetwork instance
I'm going to install a 9.5 postgresql instance on the same host. If that postgresql version is OK, I'll create a sepa... Andrea Dell'Amico
07:00 PM Task #5508: new Geonetwork instance
hostname and IP are going to be geonetwork1-p-d4s.d4science.org 146.48.122.250
 Andrea Dell'Amico
06:51 PM Task #5508 (In Progress): new Geonetwork instance
Andrea Dell'Amico
06:50 PM Task #5568: Please Update orientdb version to 2.2.12
Luca Frosini wrote:
> The last thing to be fixed in ansible script is that is a new version of hooks jas is availabl... Andrea Dell'Amico
06:19 PM Task #5568: Please Update orientdb version to 2.2.12
The last thing to be fixed in ansible script is that is a new version of hooks jas is available the new one is instal... Luca Frosini
06:17 PM Task #5568: Please Update orientdb version to 2.2.12
The tags is created but at startime the xml is rewritten so that is not at the end as expected and I didn't notice it.
 Luca Frosini
05:11 PM Task #5568: Please Update orientdb version to 2.2.12
Seem that everything is configured in the proper way. Unfortunately hooks tag is missed in ~/orientdb-community/confi... Luca Frosini
04:27 PM Task #5568: Please Update orientdb version to 2.2.12
@andrea.dellamico@isti.cnr.it fixed the ansible script. I run it. I'll check if everything is ok now. Luca Frosini
03:22 PM Task #5568: Please Update orientdb version to 2.2.12
I just notice that root own orientdb directory (i.e. orientdb-community-2.2.12).
If there is no reason I ignore, I t... Luca Frosini
03:18 PM Task #5568: Please Update orientdb version to 2.2.12
I fixed /etc/init.d/orientdb script on orientdb01-d-d4s like this:
~~~
cat /etc/init.d/orientdb
#!/bin/bash
# ... Luca Frosini
02:33 PM Task #5568: Please Update orientdb version to 2.2.12
I experiencing some issues on orientdb:
* Only orientdb02-d-d4s was started.
* trying starting the service manual... Luca Frosini
12:18 PM Task #5568 (In Progress): Please Update orientdb version to 2.2.12
thanks to @andrea.dellamico@isti.cnr.it indication I run the upgrade Luca Frosini
11:46 AM Task #5568 (Closed): Please Update orientdb version to 2.2.12
I already updated the version on ansible script.
 Luca Frosini
06:35 PM Task #5580 (Closed): Update rewrite rules for data.d4science to allow access to workspace-explorer-app
It's only a matter of adding a new context to the ansible variables.
~~~
- - { http_enabled: True, http_port: '... Andrea Dell'Amico
06:19 PM Task #5580 (Closed): Update rewrite rules for data.d4science to allow access to workspace-explorer-app
A new web-app called "workspace-explorer-app" must be released on data.d4science.org
The rewrite rules should be upd... Francesco Mangiacrapa
04:50 PM Task #5551: Produce Release Notes for gCube 4.1.0
@laskarisn@di.uoa.gr the release notes are due tomorrow but i see no progresses on this activity, please could you up... Massimiliano Assante
02:56 PM Upgrade #5079: /gcube/preprod upgrade to gCube 4.1.0
The build finished successfully on etics but we are encountering a problem at preproduction installation and we are t... Kostas Kakaletris
10:53 AM Upgrade #5079: /gcube/preprod upgrade to gCube 4.1.0
Any news on dewn07.madgik.di.uoa.gr? Roberto Cirillo
11:43 AM Task #4984 (Closed): Create new VM to host new Resource Registry
Luca Frosini
11:42 AM Task #3475 (In Progress): Add 2 OrientDB instances
Luca Frosini
11:42 AM Task #3475 (Closed): Add 2 OrientDB instances
Luca Frosini
09:10 AM Task #5566 (Closed): Create new ServiceEndpoint for storage manager library
Roberto Cirillo
09:08 AM Task #5565 (Closed): Create a cronjob for restarting thredds.d4science.org
A cronjob for restarting the gCube container hosted on thredds.d4science.org is needed.
The cronjob should restart... Roberto Cirillo

Oct 25, 2016

05:58 PM Task #5501 (Feedback): Move data from development to production GeoNetwork
Styles copied and associated to respective layers.
"W_mpa:ecoregions" renamed to "W_mpa:ecoregion".
Please check ev... Fabio Sinibaldi
11:41 AM Task #5501: Move data from development to production GeoNetwork
Hi Fabio, in addition to the style publication (for geomorphic feature layers), could you please rename the layer "W_... Emmanuel Blondel
03:43 PM Task #5338 (Closed): Allow XHR requests on D4science Geoserver WFS
Andrea Dell'Amico
02:34 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I confirm it works as well on prod. Many thanks for your support @andrea.dellamico@isti.cnr.it , much appreciated! Emmanuel Blondel
01:11 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Emmanuel Blondel wrote:
> Hi Andrea, thanks for this, indeed now we don't get any cross-origin exception on the clie... Andrea Dell'Amico
10:58 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
Thanks @andrea.dellamico@isti.cnr.it for your support, I'm going to change this ticket as Task Ticket Francesco Mangiacrapa
10:22 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
Hi Andrea, thanks for this, indeed now we don't get any cross-origin exception on the client (the good news!). But in... Emmanuel Blondel
09:59 AM Task #5338: Allow XHR requests on D4science Geoserver WFS

I reworked the CORS configuration because it seems that geoserver gets confused (or is the caller to get confused?)... Andrea Dell'Amico
03:18 PM Task #5256 (Closed): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Alessandro Pieve
03:05 PM Task #5422: develop a proxy service to be used for access http external pages from the portal domain
I'm moving this ticket as related to #5338 instead of subtask. Francesco Mangiacrapa
03:04 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Yes it's a file system. But Apache www dir also, they are static resources, wondering if you can map both. That is: t... Emmanuel Blondel
02:44 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Sorry, I don't understand. The Workspace is an online file system, Apache is a server and the Web app a sort of servi... Gianpaolo Coro
02:18 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
I think it's a different thing (but thanks for the tip). My question was: once we published some web-app to an Apache... Emmanuel Blondel
01:14 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Hi Emmanuel, the WebApp is using an old DataTransfer technology we inherited from CERN. Hopefully from the next relea... Gianpaolo Coro
12:56 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Hi, some user experience (IMHO related to the above request, so i put it here.. but please let me know if you prefer ... Emmanuel Blondel
11:59 AM Support #5552 (Closed): BlueBRIDGE VRE: recent documents error
The issue has been fixed and the Recent Documents portlet is now working. Valentina Marioli
11:57 AM Support #5552 (In Progress): BlueBRIDGE VRE: recent documents error
The problem is due to a bug in the portal session. Valentina Marioli

Oct 24, 2016

08:08 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I couldn't test this time, geoserver-dev seems down.
This test app is a way to check http://access.d4science.org/web... Emmanuel Blondel
07:43 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Can you check now?
Or can you show me a way to test by myself?
 Andrea Dell'Amico
07:35 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
It's not working with dev Geoserver on http (invoking on http://access.d4science.org) Emmanuel Blondel
07:22 PM Task #5338 (Feedback): Allow XHR requests on D4science Geoserver WFS
Please @emmanuel.blondel@fao.org can you check it again?
Thanks Pasquale Pagano
11:15 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
My fault, I assumed that the request were made over https. Now it should work over http too.
 Andrea Dell'Amico
10:48 AM Task #5338: Allow XHR requests on D4science Geoserver WFS
Hi Andrea, thanks for pushing on this. I've tried it with dev geoserver under http://access.d4science.org, but it did... Emmanuel Blondel
07:47 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Gianpaolo Coro wrote:
> Could you please install it on dataminer1-devnext?
Done.
> What happens if one of the ... Andrea Dell'Amico
07:28 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Could you please install it on dataminer1-devnext?
What happens if one of the packages has typo? The complete instal... Gianpaolo Coro
03:41 PM Task #4371 (Feedback): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
The lists are now got from subversion. script and the cron jobs work as proposed in #note-2:
* One cron job runs a... Andrea Dell'Amico
07:20 PM Task #5448: Dataminer - Need to align R configuration with RStudio simulation environment
Changing the nature of this issue since it generated a number of actions that are partially completed. Please provide... Pasquale Pagano
07:11 PM Support #5552: BlueBRIDGE VRE: recent documents error
Please provide an answer asap Pasquale Pagano
11:34 AM Support #5552 (Closed): BlueBRIDGE VRE: recent documents error
Recent Documents portlet returns an error
~~~
Sorry, it seems something is wrong with this folder.
~~~
This i... Massimiliano Assante
02:44 PM Incident #5556 (Closed): RStudio is down on RprototypingLab
The sessions files had the wrong owner. Now has been fixed.
 Andrea Dell'Amico
01:04 PM Incident #5556 (Closed): RStudio is down on RprototypingLab
Internal Server Error (code 500)
http://dataminer1-proto.d4science.org/r-connector/gcube/service/connect?gcube-token... Emmanuel Blondel
11:29 AM Task #5551 (Closed): Produce Release Notes for gCube 4.1.0
Please produce Release Notes for gCube 4.1.0 Massimiliano Assante
10:23 AM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
due to changes in a related task Gianpaolo Coro
10:13 AM Task #4372 (Closed): open some workspace repositories (directories) containing R Scripts directly from Rstudio
I guess this request can be managed in #5459 Gianpaolo Coro

Oct 21, 2016

07:29 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
@emmanuel.blondel@fao.org I've just enabled both CORS and https on the dev geoserver. Are you able to test if it solv... Andrea Dell'Amico
05:39 PM Task #5338 (In Progress): Allow XHR requests on D4science Geoserver WFS
Andrea Dell'Amico
05:14 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Please @francesco.mangiacrapa@isti.cnr.it, @andrea.dellamico@isti.cnr.it, and @gianpaolo.coro@isti.cnr.it look at thi... Pasquale Pagano
12:59 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Please note that it's not really about "external tools", it's about to query a **D4Science** Geoserver WFS, which is ... Emmanuel Blondel
12:53 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Until now we were relying directly on VLIZ Geoserver WFS (temporarily) to let GRID-ARENDAL test their web-app (using ... Emmanuel Blondel
06:11 PM Task #5546 (In Progress): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions

On rstudio-dev I've just installed a new version of the r-connector script that:
* do not allow the creation of ... Andrea Dell'Amico
02:34 PM Task #5546 (Closed): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
The public repository for the file is here: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-... Andrea Dell'Amico
05:39 PM Task #5531 (In Progress): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
infra-gateway1 must be restarted to change the /tmp file system, please provide a date. Tommaso Piccioli
05:24 PM Task #5457 (Closed): Data transfer should support update
Yes, the policies you provide satisfy the request. Pasquale Pagano
04:18 PM Task #5457: Data transfer should support update
Current implementation supports these policies in case the file to transfer is already found in the specified path:
... Fabio Sinibaldi
02:51 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
Here is the SVN folder:
https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/RConfiguration... Gianpaolo Coro
02:41 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
I'm attaching the files lists. @gianpaolo.coro@isti.cnr.it would you setup a subversion repository for them?
 Andrea Dell'Amico
02:32 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
As I wrote by email, I don't know why the r-connector script that adds users creates local users if they're not avail... Andrea Dell'Amico
09:02 AM Task #5543: Questions about CKAN and CSW support (with possible application to FAO)
Yes, please keep us informed on the issues you will find.
I am changing the issue type since this is a task for Fra... Pasquale Pagano

Oct 20, 2016

08:10 PM Task #5543: Questions about CKAN and CSW support (with possible application to FAO)
Thanks Lino for these clarifications. To be honest, I don't know anything about CKAN, and then i was not aware of the... Emmanuel Blondel
08:01 PM Task #5543: Questions about CKAN and CSW support (with possible application to FAO)
Hi Emmanuel,
the Product Catalogue was presented as a tool to collect data from other domain specific catalogues. GN... Pasquale Pagano
07:45 PM Task #5543 (Closed): Questions about CKAN and CSW support (with possible application to FAO)
I have some questions about CKAN and its support of OGC Catalogue Service for the Web (CSW):
* would it be possibl... Emmanuel Blondel
08:04 PM Task #4842 (Feedback): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
rstudio.d4science.org is now authenticating against ldap.d4science.org. While rstudio-dev.d4science.org is authentica... Andrea Dell'Amico
01:04 PM Upgrade #5078: gCubeApps VO upgrade to gCube 4.1

**Hosting Nodes**


*GHN to upgrade*
* gcube01.vliz.be:8080
* **(CNR) DONE** node64.p.d4science.researc... Roberto Cirillo

Oct 19, 2016

02:34 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Emmanuel Blondel wrote:
> Not yet. Generally speaking i would prefer to check this through the feature requested in ... Andrea Dell'Amico
02:28 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Not yet. Generally speaking i would prefer to check this through the feature requested in #5461. But if you wish, i c... Emmanuel Blondel

Oct 18, 2016

03:13 PM Task #5534 (Closed): Ansible: add new scope to the CkanConnector playbook
Andrea Dell'Amico
03:13 PM Task #5534 (In Progress): Ansible: add new scope to the CkanConnector playbook
Done.
The playbook configuration has been changed to be smartgears 2.0 compliant.
 Andrea Dell'Amico
10:01 AM Task #5534 (Closed): Ansible: add new scope to the CkanConnector playbook
A new scope should be added to the ckan-connector playbook for the service hosted on SobigData VO:
~~~
ckan-sobig... Roberto Cirillo
02:48 PM Task #5290: Align DataMiner Locale to the RStudio Locale
@emmanuel.blondel@fao.org did you have the chance to test this? Andrea Dell'Amico
02:47 PM Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
We are going towards a continuous packages synchronization, see #4371. Andrea Dell'Amico
02:44 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
rstudio-dev was also migrated. The rstudio ldap configuration was changed, at the next reboot it will be effective.
 Andrea Dell'Amico
02:42 PM Task #4371 (In Progress): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
The script and the cron jobs are ready.
We now only need a repository where to store the three lists.
 Andrea Dell'Amico
09:31 AM Task #5533 (Closed): Prometheus and Grafana investigation
Prometheus and Grafana investigation for accounting Alessandro Pieve

Oct 17, 2016

05:55 PM Task #5501: Move data from development to production GeoNetwork
Thanks Fabio, let me know when you can complete the style publication.
For what concerns metadata, it's not the pr... Emmanuel Blondel
02:16 PM Task #5497: Move some infrastructure services to the ganeti cluster
gw1.d4science.org is running. It will take the place of gw.d4science.org.
 Andrea Dell'Amico
11:31 AM Task #5531 (Closed): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
with the same size of /tmp of infra-gateway.d4science.org Massimiliano Assante

Oct 14, 2016

10:25 PM Support #5528 (Closed): Add scope to database endpoint
Denis Pyriochos
07:12 PM Support #5528 (In Progress): Add scope to database endpoint
Hey @roberto.cirillo@isti.cnr.it you added /gcube/devNext and not /gcube/devNext/NextNext :) My query returns an empt... Denis Pyriochos
02:56 PM Support #5528 (Closed): Add scope to database endpoint
done Roberto Cirillo
02:53 PM Support #5528 (In Progress): Add scope to database endpoint
Roberto Cirillo
02:28 PM Support #5528 (Closed): Add scope to database endpoint
The endpoint created by #3894 needs access to /gcube/devNext/NextNext, as required by https://support.d4science.org/i... Denis Pyriochos
06:09 PM Upgrade #5529: D4Science Root VO upgrade to gCube 4.1.0
*WHN to dismiss*
* **(CNR) DONE** auth-pre-d4s.d4science.org (authorization service 1.0)
**Configuration**
... Roberto Cirillo
05:57 PM Upgrade #5529 (Completed): D4Science Root VO upgrade to gCube 4.1.0
Roberto Cirillo
05:53 PM Upgrade #5077: FARM VO upgrade to gCube 4.1
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** node24.p.d4science.research-infrastructures.eu:8080
* **(C... Roberto Cirillo
05:52 PM Upgrade #5080: SoBigData VO upgrade to gCube 4.1
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sbd.d4science.org:8080
* **(CNR) DONE** collec... Roberto Cirillo
05:49 PM Upgrade #5081: SmartArea VO upgrade to gCube 4.1
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** collector-sa-d4s.smart-applications.area.pi.cnr.it:8080
* ... Roberto Cirillo
11:44 AM Task #5526 (Closed): Please backup Server Couchbase on Dev and Prod
Please backup Server Couchbase on Dev and Prod
Dev:
http://couchbase01-d-d4s.d4science.org:8091/
Prod:
http://c... Alessandro Pieve
11:39 AM Task #2174: Dataminer and Statistical Manager packages
install_github("flr/FLCore")
install_github("flr/FLash")
install_github("flr/FLAssess")
install_github("flr/gg... Gianpaolo Coro

Oct 13, 2016

07:42 PM Task #5497: Move some infrastructure services to the ganeti cluster
ns-cache1 migration completed.
 Andrea Dell'Amico
05:35 PM Task #5497: Move some infrastructure services to the ganeti cluster
ns-cache2 has been migrated. Now it's ns-cache1's turn.
 Andrea Dell'Amico
07:05 PM Task #5523 (Rejected): investigate on the BTRT memory leak problem
Gabriele Giammatteo
07:03 PM Incident #5479 (Closed): Etics build fails after few seconds
the problem was caused by a process (tomcat) on the vm that was consuming too much memory (probably a memory leak). R... Gabriele Giammatteo
06:53 PM Task #5501 (In Progress): Move data from development to production GeoNetwork
Data successfully copied to geoserver.d4science.org. We still need to copy styles as well and set the defaults for la... Fabio Sinibaldi

Oct 12, 2016

03:50 PM Task #5508 (Closed): new Geonetwork instance
We need a new instance of Geonetwork and a postgis db to connect it to.
To create a new db in the currently used dbm... Fabio Sinibaldi
12:25 PM Task #5504 (Rejected): Provide the Infrastructure with a (shared) RDBMS node
Duplicate ticket Massimiliano Assante
12:21 PM Task #5504: Provide the Infrastructure with a (shared) RDBMS node
it seems to me a duplicate of #5502. Please verify and close if I am correct. Pasquale Pagano
12:08 PM Task #5504 (Rejected): Provide the Infrastructure with a (shared) RDBMS node
more and more often the external and non applications require support DBs (including our own apps). See I2S, EFG, and... Massimiliano Assante
09:44 AM Task #5501: Move data from development to production GeoNetwork
@leonardo.candela@isti.cnr.it despite the fact that metadata are not mandatory for MPA analysis, it's always nice to ... Emmanuel Blondel
09:01 AM Task #5501: Move data from development to production GeoNetwork
@emmanuel.blondel@fao.org a couple of clarifications from my side:
* It should not be allowed to have datasets in ... Leonardo Candela
08:53 AM Support #5489: next.d4science credentials
Dear Giancarlo and Massimiliano, thank you for your help. Now I can log in and execute the algorithm SIMULFISHKPIS wh... Gerasimos Antzoulatos

Oct 11, 2016

08:36 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Done. Many thanks Emmanuel Blondel
07:52 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I opened a ticket, #5501, and related to this activity. It is about the porting of data from development to productio... Pasquale Pagano
05:58 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
In principle, i have nothing against moving to prod, if it can boost the overall MPA activity and solve its blocking ... Emmanuel Blondel
05:38 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
I believe that we should consider to move this work in production since the activity #5214 clearly illustrate that:
... Pasquale Pagano
12:25 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Any update on this?
I remind this is blocking the MPA web-app VRE integration, and i hope that this restriction pr... Emmanuel Blondel
08:35 PM Task #5501: Move data from development to production GeoNetwork
Many thanks Lino for pushing on that, or for your support to move forward on this Use case. Just to clarify then:
... Emmanuel Blondel
07:50 PM Task #5501 (Closed): Move data from development to production GeoNetwork
Move all the data he published in dev GN to production GN. Resources includes 27 feature types/layers in geoserver (a... Pasquale Pagano
06:49 PM Task #5393 (Closed): Deploy service + endpoint
The Access Fish Growth Simulation Data service is deployed on dl20.di.uoa.gr under the following VREs
1) /gcube/pr... Kostas Kakaletris
05:13 PM Task #5393: Deploy service + endpoint
I've added the ServiceEndpoint to the following VREs in preproduction environment:
~~~
/gcube/preprod/preVRE
/gc... Roberto Cirillo
05:03 PM Task #5497 (In Progress): Move some infrastructure services to the ganeti cluster
migration of ns-cache2 is ongoing.
 Andrea Dell'Amico
03:41 PM Task #5497 (Closed): Move some infrastructure services to the ganeti cluster
Candidates are:
ns-cache1
ns-cache2
gw{1,2} (new openvpn servers that will live side by side)
monitoring-proxy,... Andrea Dell'Amico
04:21 PM Support #5489 (Closed): next.d4science credentials
Giancarlo Panichi
04:02 PM Support #5489: next.d4science credentials
Dear Gerasimos, your algorithm SIMULFISHKPIS is deployed in RPrototypingLab:
https://i-marine.d4science.org/group/... Giancarlo Panichi
03:03 PM Support #5489: next.d4science credentials
the test and development of SAI algorithms was moved on Prototype LAB VRE in production, @g.panichi@isti.cnr.it pleas... Massimiliano Assante
02:30 PM Support #5489 (Closed): next.d4science credentials
I used to log in the dev.d4science and now I can not log in to the next.d4science. Please advice asap as I want to te... Gerasimos Antzoulatos
04:07 PM Incident #5490 (Closed): error when running CATCH_BY_GEARS experiment
Giancarlo Panichi
03:31 PM Incident #5490: error when running CATCH_BY_GEARS experiment
Thanks, I have just repeated the experiments and it works properly now. Paul Taconet
03:24 PM Incident #5490: error when running CATCH_BY_GEARS experiment
I have reinstalled the software and I have tested it with default parameters it seems to work fine.
Please can you r... Giancarlo Panichi
02:46 PM Incident #5490 (Closed): error when running CATCH_BY_GEARS experiment
When I run my algorithm CATCH_BY_GEARS on the RprototypingLab (org.gcube.dataanalysis.wps.statisticalmanager.synchser... Paul Taconet
03:45 PM Task #5495 (Closed): Dismiss mongo-test.d4science.org
Done. Tommaso Piccioli
03:26 PM Task #5495 (Closed): Dismiss mongo-test.d4science.org
The mentioned instance was used for development tests. I don't need it any more and there is no data I need.
The mac... Luca Frosini
03:05 PM Task #5105 (Closed): Enable WebSocket support on nginx for infrastructure gateway
Also verified on the rstudio servers. Andrea Dell'Amico

Oct 10, 2016

06:30 PM Task #5393 (In Progress): Deploy service + endpoint
I've created in preproduction environment the new ServiceEndpoint under the scope /gcube/preprod.
You could see it... Roberto Cirillo
06:23 PM Task #5398: Endpoint access - SimulFishGrowthData
This task is for production environment not for preproduction environment. The new VRE will be created in production ... Roberto Cirillo
06:23 PM Task #5397: Endpoint access - SimulFishGrowthData
This task is for production environment not for preproduction environment. The new VRE will be created in production ... Roberto Cirillo
06:21 PM Task #5396: Endpoint access - SimulFishGrowthData
This task is for production environment not for preproduction environment. The new VRE will be created in production ... Roberto Cirillo
11:44 AM Incident #5479 (Closed): Etics build fails after few seconds
A lot of components were failed after few seconds in the last two builds for release 4.1.0:
~~~
http://eticsbuild... Roberto Cirillo

Oct 09, 2016

12:52 PM Task #5476 (Closed): Enable OCSP stapling on the ssl enabled web services
We can do this only on Ubuntu >= 14.04, because apache 2.4 and nginx >= 1.3 are required.
Some links:
https://wik... Andrea Dell'Amico

Oct 08, 2016

01:02 PM Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
The new proposal is the following:
* Three lists are maintained into a subversion repository. One for the debian p... Andrea Dell'Amico
12:52 PM Task #5292 (Closed): Destroy VM dev.d4science.org (not destroyed anymore)
Done.
Moved the VM configuration and removed the host name from the dns.
 Andrea Dell'Amico
12:44 PM Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
The ldap authentication against the new ldap server is working correctly on dataminer1-prototype, see #4865.
Let me... Andrea Dell'Amico
12:43 PM Task #4865 (Closed): Installing data analysis machine to develop prototypes
rstudio server is working, and the ldap authentication against the new ldap server too. Andrea Dell'Amico
12:22 AM Task #5256 (In Progress): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Alessandro Pieve
12:21 AM Task #5256: Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Checked correctly Alessandro Pieve

Oct 07, 2016

08:57 PM Task #5256 (Feedback): Please deploy smart-executor 1.4 on smartexecutor1-d-d4s.d4science.org 146.48.122.204
Please report feedback and close the ticket. Pasquale Pagano
08:15 PM Task #5451 (Feedback): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
The R packages and their dependencies are now aligned on all the dataminer and rstudio servers.
 Andrea Dell'Amico
04:20 PM Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
The R packages update is running right now.
I'm listing the debian packages that provide libraries needed by some ... Andrea Dell'Amico
03:36 PM Task #5451 (In Progress): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
Andrea Dell'Amico
02:16 PM Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
The dataminer all have the same set of R packages installed.
On the rstudio/rstudio-dev servers the R installed pack... Andrea Dell'Amico
12:30 PM Task #5451 (Closed): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
Non exhaustive inventory of libraries (to complete by R-related system admins probably):
* CURL
* GDAL
* libxml... Emmanuel Blondel
07:54 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Emmanuel Blondel wrote:
> Thanks Andrea for the information, and for your prompt action on this ticket (again sorry,... Andrea Dell'Amico
06:45 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Thanks Andrea for the information, and for your prompt action on this ticket (again sorry, i was not in copy of the t... Emmanuel Blondel
01:45 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Emmanuel Blondel wrote:
> Sorry, i was not aware of this new ticket, so in the meanwhile i've created a support tick... Andrea Dell'Amico
07:43 PM Task #4865 (Feedback): Installing data analysis machine to develop prototypes
Pasquale Pagano
07:41 PM Task #4865 (In Progress): Installing data analysis machine to develop prototypes
Pasquale Pagano
06:39 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Maybe not, certainly. I'm categoric on the tests i did and where i did it, on RPrototypingLab RStudio and Dataminer, ... Emmanuel Blondel
06:13 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
The Dataminer has been recently restarted several times in the RPrototypingLab thus the locale has been reloaded. In ... Gianpaolo Coro
01:26 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
I confirm myself and Levi have been running GRID-ARENDAL algorithm in RPrototypingLab VRE RStudio (for running in par... Emmanuel Blondel
01:11 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Hi Emmanuel, are you sure you are not using the RStudioLab or the StockAssessment VRE? IRD was using these two.
T... Gianpaolo Coro
01:06 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Pasquale Pagano wrote:
> If I correctly understood, in one VRE, RPrototypingLab, this issue is not present. A more g... Emmanuel Blondel
01:04 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Gianpaolo Coro wrote:
> Hi Emmanuel, your request is right and a process will be implemented to give you this inform... Emmanuel Blondel
12:58 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
If I correctly understood, in one VRE, RPrototypingLab, this issue is not present. A more general solution has to be ... Pasquale Pagano
12:46 PM Task #5452: Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Hi Emmanuel, your request is right and a process will be implemented to give you this information.
For the time bei... Gianpaolo Coro
12:35 PM Task #5452 (Closed): Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
Is it possible to have a simple way for users to check that RStudio & Dataminer configs are aligned?
As suggestion, ... Emmanuel Blondel
06:25 PM Task #5460: Improve Tabular Data Manager GUI
I must check, but I think we cannot do operations on a TR declared final Giancarlo Panichi
05:11 PM Task #5460 (Closed): Improve Tabular Data Manager GUI
Please make the status of a Tabular resource more explicit, and improve UI by (either/or):
Disable actions that wi... Pasquale Pagano
06:07 PM Task #5178 (Closed): Enable caching of static content (images) on gateway production cluster
Andrea Dell'Amico
06:06 PM Incident #5436 (Closed): the authorization-service node is not reachable outside the CNR network
Andrea Dell'Amico
05:11 PM Support #4855: TabMan; I cannot remove a merged column, but I can after I clone
I opened a task with @anton.ellenbroek@fao.org suggestions. Pasquale Pagano
05:02 PM Support #4855: TabMan; I cannot remove a merged column, but I can after I clone
Please make the status of a Tabular resource more explicit, and improve UI by (either/or):
* Disable actions that ... Anton Ellenbroek
04:41 PM Support #4855 (Rejected): TabMan; I cannot remove a merged column, but I can after I clone
If the dataset is final the behaviour is the expected one, if not please reopen the ticket and report additional info... Pasquale Pagano
02:36 PM Task #5457 (Closed): Data transfer should support update
The data transfer service should support the capability to update previously transferred files and directories. Pasquale Pagano
02:17 PM Task #5353: Database + endpoint needed
step 1 - ok :) Denis Pyriochos
09:02 AM Task #5353: Database + endpoint needed
Denis, user and password are the same of the dev database, I'm sending the password to you via email. Tommaso Piccioli
01:03 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
The WebApp publisher is a process of Dataminer and, as such, all the information about a Web application is stored on... Gianpaolo Coro
12:44 PM Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
An option could be to publish on the IS the web app made accessible via access.d4science.org. This will present the s... Pasquale Pagano
12:26 PM Task #5448: Dataminer - Need to align R configuration with RStudio simulation environment
Hello, let me explain, I created this ticket to make it clearly separated from an activity (developed a specific R al... Emmanuel Blondel
12:15 PM Task #5448: Dataminer - Need to align R configuration with RStudio simulation environment
Are there other subtasks associated to this activity? If we follow the ticket netiquette, sub tickets are a partition... Pasquale Pagano

Oct 06, 2016

11:41 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Blocking for https://support.d4science.org/issues/4991 Emmanuel Blondel
11:02 PM Task #5338: Allow XHR requests on D4science Geoserver WFS
Please be sure to target also dev geoservers (and not only), required for the ongoing UI developments (http://geoserv... Emmanuel Blondel
11:30 PM Task #5290: Align DataMiner Locale to the RStudio Locale
Sorry, i was not aware of this new ticket, so in the meanwhile i've created a support ticket for this to split from t... Emmanuel Blondel
11:21 PM Task #5448 (Closed): Dataminer - Need to align R configuration with RStudio simulation environment
It was noticed in this activity https://support.d4science.org/issues/4652#note-24 that R configuration was misaligned... Emmanuel Blondel
11:12 PM Task #5447 (Closed): Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance
Initial ticket:
```
Dataminer - web-app publisher - need option to keep single web-app target URL:
Dataminer web... Emmanuel Blondel
10:48 PM Incident #5436 (Feedback): the authorization-service node is not reachable outside the CNR network
Andrea Dell'Amico
10:48 PM Incident #5436 (In Progress): the authorization-service node is not reachable outside the CNR network
Port 9090 is now open to the world.
 Andrea Dell'Amico
02:38 PM Incident #5436 (Closed): the authorization-service node is not reachable outside the CNR network
a firewall in node7.d.d4science.research-infrastructures.eu prevent access from athens to the authorization service n... Lucio Lelii
05:39 PM Task #4919 (Closed): Enhance raster data metadata for the data catalogue
Gianpaolo Coro
05:23 PM Incident #5441 (Closed): org.gcube.portlets-admin.fhn-manager-portlet org.gcube.portlets-admin.fhn-manager-portlet.1-1-0 gwt-user jar in portlet context
Released version 1.1.1 fixes this issue. See related release ticket. Fabio Sinibaldi
05:16 PM Incident #5441 (Closed): org.gcube.portlets-admin.fhn-manager-portlet org.gcube.portlets-admin.fhn-manager-portlet.1-1-0 gwt-user jar in portlet context
The gwt-user jar and get servlet jar are set as compile in pom, they should be set at provided Massimiliano Assante
04:40 PM Incident #5439 (Closed): ETICS remote builds fail do tue status not found
Massimiliano Assante
04:40 PM Incident #5439 (In Progress): ETICS remote builds fail do tue status not found
Massimiliano Assante
03:50 PM Incident #5439 (Closed): ETICS remote builds fail do tue status not found
probably the disk space has finished Massimiliano Assante
04:20 PM Task #5440 (Closed): DataMiner in the SoBigData.eu VRE
DataMiner is required in the SoBigData.eu VRE:
https://services.d4science.org/group/sobigdata.eu
The required res... Gianpaolo Coro
01:09 PM Task #5353: Database + endpoint needed
Dear @tommaso.piccioli@isti.cnr.it could you please send me the password as I should run the init scripts for the dat... Denis Pyriochos
12:50 PM Task #5434 (Closed): Edison environment
A new VO, named Edison, has to be created. This new VO will host the VREs for the Edison project. A first VRE has als... Pasquale Pagano
09:55 AM Upgrade #5079 (In Progress): /gcube/preprod upgrade to gCube 4.1.0
Roberto Cirillo
09:54 AM Upgrade #5079 (Planned): /gcube/preprod upgrade to gCube 4.1.0
Roberto Cirillo

Oct 05, 2016

08:12 PM Support #5234 (Closed): svn.madgik.di.uoa.gr authentication issues

(1) The gcube repository right now is open to the public for read. The behavior to the link mentioned in the ticket... Kostas Kakaletris
05:06 PM Support #5234: svn.madgik.di.uoa.gr authentication issues
Login to https://svn.madgik.di.uoa.gr/code/ is working with my personal account, so it must be a problem with the spe... Kostas Kakaletris
04:53 PM Support #5234 (In Progress): svn.madgik.di.uoa.gr authentication issues
Kostas Kakaletris
06:12 PM Upgrade #5083: Preprod Gateway upgrade to gCube 4.1
All the portlets having built last night have been deployed on preprod Massimiliano Assante
12:16 PM Upgrade #5083 (In Progress): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
12:16 PM Upgrade #5083 (Planned): Preprod Gateway upgrade to gCube 4.1
Massimiliano Assante
06:10 PM Upgrade #5079: /gcube/preprod upgrade to gCube 4.1.0
**Hosting Nodes**
*GHN to upgrade*
* **(CNR) DONE** access-d.d4science.org
* **(CNR) DONE** collector-pre.d4sc... Roberto Cirillo
06:00 PM Task #5169 (Closed): Prepare environment to test Generic Worker on Dataminer
Tests have been done with Cloud computing algorithms using two DataMiners as Worker nodes. Everything works fine with... Gianpaolo Coro
01:22 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
The issue was due to a common-scope library left in the web application. The newly installed service works. All the r... Gianpaolo Coro
12:11 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
I'm calling the service with the NextNext token, but I see these errors on the GHN referring to the gCubeApps scope:
... Gianpaolo Coro
11:39 AM Task #5169 (Feedback): Prepare environment to test Generic Worker on Dataminer
Andrea Dell'Amico
11:39 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
It seems it's working now. The correct scopes are `/gcube/devNext /gcube/devNext/NextNext`
 Andrea Dell'Amico
10:50 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
Lucio Lelii wrote:
> java TokenGenerator <TOKEN_GIVEN_BY_LUCIO> dataminer2-d-d4s.d4science.org 80 /home/gcube/.conta... Andrea Dell'Amico
10:41 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
java TokenGenerator <TOKEN_GIVEN_BY_LUCIO> dataminer2-d-d4s.d4science.org 80 /home/gcube/.containerxml/2-container.xm... Lucio Lelii
10:40 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
A question about the `http://thredds.d4science.org/thredds/fileServer/public/netcdf/gebco_08_OCEANS_CLIMATOLOGY_METEO... Andrea Dell'Amico
10:14 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
Gianpaolo Coro wrote:
> Could you retry now please?
> Anyway, I fear that some snapshots of the authorization libr... Andrea Dell'Amico
12:31 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
Could you retry now please?
Anyway, I fear that some snapshots of the authorization libraries are not updated. Plea... Gianpaolo Coro
05:39 PM Task #5422 (Closed): develop a proxy service to be used for access http external pages from the portal domain
This service should provide a general solution for rendering within the portal external pages that uses the HTTP prot... Gabriele Giammatteo
04:29 PM Task #4107 (Closed): install FHNManager and FHNPortlet
Nunzio Andrea Galante
04:25 PM Task #4106 (Closed): install portal 3.11.0
Daniele Pavia
04:23 PM Task #4112 (Closed): import users from production infrastructure
Well, in the end we decided to create test users when the need arises and be done with it. Sorry for all the spam gen... Daniele Pavia
03:36 PM Task #5353: Database + endpoint needed
Is there a way to give the password as I should run the setup scripts? Denis Pyriochos
02:46 PM Task #5353 (In Progress): Database + endpoint needed
New empty DB created ( SimulFishGrowth_pre ) , is available at the server db-sfg-pre.d4science.org with the same logi... Tommaso Piccioli
01:02 PM Task #5353: Database + endpoint needed
Better safe than sorry, eh? ;) Denis Pyriochos
12:59 PM Task #5353: Database + endpoint needed
Denis Pyriochos wrote:
> As far as I know and based on your suggestions, we are setting the current scope and then q... Massimiliano Assante

Oct 04, 2016

07:44 PM Task #5169: Prepare environment to test Generic Worker on Dataminer
Gianpaolo Coro wrote:
> The GW-Dataminer machines should be placed behind a proxy named dataminer-d-workers.d4scienc... Andrea Dell'Amico
07:43 PM Task #5169 (In Progress): Prepare environment to test Generic Worker on Dataminer
I tried using the zip file at last.
The deploy fails with the following exception:
~~~
2016-10-04 19:38:04,614... Andrea Dell'Amico
10:34 AM Task #5169: Prepare environment to test Generic Worker on Dataminer
The GW-Dataminer machines should be placed behind a proxy named dataminer-d-workers.d4science.org Gianpaolo Coro
06:00 PM Task #5359 (In Progress): Endpoint access

> Please bear with me and let me get it straight. In a brand new portlet we are developing and in a servlet we are ... Massimiliano Assante
05:51 PM Task #5359: Endpoint access
Please bear with me and let me get it straight. In a brand new portlet we are developing and in a servlet we are deve... Denis Pyriochos
04:22 PM Task #5359: Endpoint access
Hi Denis, yes, the RPrototypeLab substitutes the dev. environment for you and acts like a pre-production environment ... Gianpaolo Coro
04:07 PM Task #5359: Endpoint access
As @gianpaolo.coro@isti.cnr.it pointed, we will ask for permission on a per VRE basis. Nevertheless I am very interes... Denis Pyriochos
03:50 PM Task #5359: Endpoint access
So far we had
1. the dev DataMiner as found at https://next.d4science.org/infrastructure-monitor# and is valid f... Denis Pyriochos
01:54 PM Task #5359: Endpoint access
During the creation phase of a VRE (or after), Dataminer should be explicitly requested along with algorithms. Depend... Gianpaolo Coro
01:27 PM Task #5359: Endpoint access
So Gianpaolo, the DataMiner is accessible to newly created scopes-VREs automatically (out of the box)? Or one should ... Denis Pyriochos
05:43 PM Task #5353: Database + endpoint needed
As far as I know and based on your suggestions, we are setting the current scope and then query the IS for SimulFishG... Denis Pyriochos
04:37 PM Task #5353: Database + endpoint needed
Denis, before proceeding I would like to ask if your query to the IS for the endpoint (SimulFishGrowth DB) uses the c... Massimiliano Assante
01:22 PM Task #5353: Database + endpoint needed
The previous database is for development, this is for preproduction. We may need one more for production.
The data... Denis Pyriochos
04:39 PM Task #5398 (Closed): Endpoint access - SimulFishGrowthData
For the mentioned VRE, we needs access to the endpoint
* SimulFishGrowthData
 Denis Pyriochos
04:38 PM Task #5397 (Closed): Endpoint access - SimulFishGrowthData
For the mentioned VRE, we needs access to the endpoint
* SimulFishGrowthData
 Denis Pyriochos
04:38 PM Task #5396 (Closed): Endpoint access - SimulFishGrowthData
For the mentioned VRE, we needs access to the endpoint
* SimulFishGrowthData
 Denis Pyriochos
04:33 PM Task #5393 (Closed): Deploy service + endpoint

1. We need the service named
org.gcube.data-access.simul-fish-growth-data.1.0
[integrated at 4.1](https:/... Denis Pyriochos
04:19 PM Task #5386 (Closed): Endpoint access - SimulFishGrowth
For the mentioned VRE, we needs access to the endpoint
* Service / Database / SimulFishGrowth Denis Pyriochos
04:19 PM Task #5385 (Closed): Endpoint access - SimulFishGrowth
For the mentioned VRE, we needs access to the endpoint
* Service / Database / SimulFishGrowth Denis Pyriochos
04:19 PM Task #5384 (Closed): Endpoint access - SimulFishGrowth
For the mentioned VRE, we needs access to the endpoint
* Service / Database / SimulFishGrowth Denis Pyriochos
04:14 PM Task #5383 (Closed): Endpoint access
For the mentioned VRE, we needs access to the endpoint
* Service / DataAnalysis / DataMiner
algorithm
* Simu... Denis Pyriochos
04:14 PM Task #5382 (Closed): Endpoint access
For the mentioned VRE, we needs access to the endpoint
* Service / DataAnalysis / DataMiner
algorithm
* Simu... Denis Pyriochos
04:03 PM Task #5381 (Closed): Endpoint access
For the mentioned VRE, we needs access to the endpoint
* Service / DataAnalysis / DataMiner
algorithm
* Simu... Denis Pyriochos
10:04 AM Task #4106 (In Progress): install portal 3.11.0
Liferay portal has been deployed (and updated to 4.1.0 snapshot), we just need to understand whether we need to impor... Daniele Pavia
09:55 AM Task #4108 (Closed): install authorisation service
The authorization-service-2.0.0 has been deployed. Daniele Pavia
09:51 AM Task #4112: import users from production infrastructure
Yes Pasquale, I guess you're right. The idea was to import into out Liferay instance those users that are supposed to... Daniele Pavia

Oct 03, 2016

10:05 PM Task #5353: Database + endpoint needed
We already have a dedicated postgresql with a database that has the same name: https://support.d4science.org/issues/3... Andrea Dell'Amico
07:13 PM Task #5353 (Closed): Database + endpoint needed
1. We need a postgress database. The database will not host large volume of data, a starting point of 10G should be s... Denis Pyriochos
09:39 PM Task #5359: Endpoint access
Dear Denis, differently from the development environment, in the production environment DataMiner is a cluster of mac... Gianpaolo Coro
09:09 PM Task #5359: Endpoint access
If I understand correct, each endpoint is valid for a certain scope (or set of scopes). Our portlet shall operate in ... Denis Pyriochos
07:44 PM Task #5359: Endpoint access
What do you mean by you need access to the following endpoint? Massimiliano Assante
07:25 PM Task #5359 (Closed): Endpoint access
We needs access to the following endpoint:
* Service / DataAnalysis / DataMiner
 Denis Pyriochos
09:04 PM Task #5358: Portlet resources
Yes. And we will have each one as a sub-issue. Denis Pyriochos
07:47 PM Task #5358: Portlet resources
If I understand correctly you need to create some infrastructure resources (of type service endpoint?) and to read th... Massimiliano Assante
07:24 PM Task #5358 (Closed): Portlet resources
The portlet we are integrating into gcube 4.1 needs a) some resources and b) access to some resources.
The requests ... Denis Pyriochos
04:56 PM Task #4112: import users from production infrastructure
This ticket does not make sense as it is now. You should clarify why you need this list of users, what kind of inform... Pasquale Pagano
03:18 PM Task #4112 (In Progress): import users from production infrastructure
Massimiliano, could we have an export of the users from the production liferay portal? Is that the best course to acc... Daniele Pavia
03:13 PM Upgrade #1956 (Completed): gCubeApps VO upgrade to gCube 3.10.0
Massimiliano Assante
02:46 PM Support #5342 (Closed): Enable user dkatris (at cite.gr) on gCube SVN
Done Tommaso Piccioli
02:05 PM Support #5342 (Closed): Enable user dkatris (at cite.gr) on gCube SVN
Please enable Dimitris on gCube SVN Massimiliano Assante
01:19 PM Task #5338 (Closed): Allow XHR requests on D4science Geoserver WFS
At now JS clients are not able to perform XHRs on GeoServer. This is blocking for implementing UIs that require WFS X... Emmanuel Blondel
 

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