D4science

Jan 07, 2019

04:20 PM ISTI Open Access Feature #13100 (Closed): Switch off demo.openportal.d4science.org and node0-d-puma.d4science.org

The first one was created for a demo. Andrea Dell'Amico

04:04 PM ISTI Open Access Feature #11601: Migrate the OpenPortal services to production machines

We had the OK to switch the official hostname so that it points to the new frontend: just done.
Andrea Dell'Amico

11:55 AM D4Science Infrastructure Task #12935 (Closed): sdi-service: upgrade commons-codec library

The library has been upgraded in production and preproduction environments. Roberto Cirillo

10:26 AM D4Science Infrastructure Task #11229 (Closed): Upgrade jdk on tagme.d4science.org

Roberto Cirillo

09:21 AM StocksAndFisheriesKB Task #13098 (Closed): Update GRSF records in GRSF VRE

The approved records in GRSF VRE are missing information about the sources they are derived from (i.e. FIRMS, RAM, Fi... Yannis Marketakis

09:17 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Hi Luca. Thanks a lot.
What exactly do you mean with the following?
Luca Frosini wrote:
> Please be sure that the... Yannis Marketakis

Jan 04, 2019

05:39 PM D4Science Infrastructure Incident #13096: Share Updates mentioning in some VRE may not work

Could not reproduce, the issue is due to the fact that it seems that arrives an empty mentioned id somehow. Patching ... Massimiliano Assante

05:21 PM D4Science Infrastructure Incident #13096 (In Progress): Share Updates mentioning in some VRE may not work

Massimiliano Assante

05:18 PM D4Science Infrastructure Incident #13096 (Closed): Share Updates mentioning in some VRE may not work

The following exception is reported.
~~~
16:10:21,919 WARN [ajp-bio-8009-exec-7][SecurityPortletContainerWrapper... Massimiliano Assante

10:44 AM D4Science Infrastructure Incident #13090 (Rejected): HomeLibrary stil not return VRE folder in prepod

The error was not related to the VRE folder Luca Frosini

10:24 AM D4Science Infrastructure Incident #13090: HomeLibrary stil not return VRE folder in prepod

Lucio please check what's the issue with the preprod repository, if necessary we can "destroy" it and recreate it. Massimiliano Assante

Dec 31, 2018

04:46 PM ISTI Open Access Feature #13078 (Closed): Put the three openportal servers under backup

Done Tommaso Piccioli

01:29 PM D4Science Infrastructure Incident #13090 (Rejected): HomeLibrary stil not return VRE folder in prepod

Luca Frosini

09:55 AM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

I'm still getting the same error:
~~~
$ ./run.sh smartgears-node.yml -i inventory/hosts.production -t grsf_publis... Luca Frosini

Dec 28, 2018

04:18 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

The new feature is available in the production instance.
@marketak@ics.forth.gr you can update the records when you ... Luca Frosini

02:54 PM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

Luca Frosini wrote:
> Thanks a lot.
>
> Let me know when you find a solution and what I have to do in the future.... Andrea Dell'Amico

02:39 PM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

Thanks a lot.
Let me know when you find a solution and what I have to do in the future. Luca Frosini

02:36 PM D4Science Infrastructure Task #13087 (Closed): Please upgrade grsf-publisher-ws to latest version

I run the playbook successfully.
About your authentication problems: limiting the run to a selected role it's not e... Andrea Dell'Amico

09:21 AM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

@andrea.dellamico@isti.cnr.it I'm getting the same error:
~~~
$ ./run.sh smartgears-node.yml -i inventory/hosts.p... Luca Frosini

Dec 27, 2018

06:07 PM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

You must limit the scope of the playbook, as usual: if you run it without specifying any tags it will try to execute ... Andrea Dell'Amico

04:07 PM D4Science Infrastructure Task #13087: Please upgrade grsf-publisher-ws to latest version

The installed war must be:
~~~
grsf-publisher-ws-1.8.0-4.13.1-176225.war
~~~ Luca Frosini

04:05 PM D4Science Infrastructure Task #13087 (Closed): Please upgrade grsf-publisher-ws to latest version

Using the following command:
~~~
./run.sh smartgears-node.yml -i inventory/hosts.production -l smart_grsf_prod
~... Luca Frosini

12:28 PM D4Science Infrastructure Support #13083 (Closed): mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Done also on production environment. I'm going to close this ticket Roberto Cirillo

11:50 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Roberto Cirillo wrote:
> Andrea Dell'Amico wrote:
> > On the other mongo instances is installed the wrong hook scri... Andrea Dell'Amico

11:43 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Andrea Dell'Amico wrote:
> On the other mongo instances is installed the wrong hook script too.
> A recap: mongodb ... Roberto Cirillo

11:41 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Andrea Dell'Amico wrote:
> Roberto Cirillo wrote:
> > After the restart I see the same error on mongo2-d-d4s and mo... Roberto Cirillo

11:35 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

Roberto Cirillo wrote:
> After the restart I see the same error on mongo2-d-d4s and mongo4-d-d4s
But mongodb on m... Andrea Dell'Amico

11:34 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

On the other mongo instances is installed the wrong hook script too.
A recap: mongodb does not support a service rel... Andrea Dell'Amico

11:25 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

After the restart I see the same error on mongo2-d-d4s and mongo4-d-d4s Roberto Cirillo

11:20 AM D4Science Infrastructure Support #13083: mongo2-d-d4s, mongo4-d-d4s: Certificate expired

OK thanks. I'm going to run the playbook as requested Roberto Cirillo

11:16 AM D4Science Infrastructure Support #13083 (In Progress): mongo2-d-d4s, mongo4-d-d4s: Certificate expired

The certificates were correctly renewed on all the dev mongo instances, Dec 1st. But I see that the restart action is... Andrea Dell'Amico

10:47 AM D4Science Infrastructure Support #13083 (Closed): mongo2-d-d4s, mongo4-d-d4s: Certificate expired

The certificate seems to be expired on the hosts above and the lag is very high now. I see the following logs:
~~~... Roberto Cirillo

11:15 AM D4Science Infrastructure Incident #13084 (Closed): SoBigData: collector corrupted

db restored from backup of 20/12. There weren't any more recent backup. Roberto Cirillo

11:07 AM D4Science Infrastructure Incident #13084 (In Progress): SoBigData: collector corrupted

Roberto Cirillo

11:06 AM D4Science Infrastructure Incident #13084 (Closed): SoBigData: collector corrupted

The IS-collector service doesn't work anymore. A db restore is needed. Roberto Cirillo

Dec 21, 2018

04:52 PM ISTI Open Access Feature #11601 (Feedback): Migrate the OpenPortal services to production machines

Andrea Dell'Amico

04:26 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

I thought it would create issues if the field name is the same.
Since it does not, then use ***database_sources***. ... Yannis Marketakis

03:35 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Yannis Marketakis wrote:
> So in that case, the field name should be different. Right?
It could. But if it is eas... Luca Frosini

03:10 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

So in that case, the field name should be different. Right? Yannis Marketakis

03:02 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Yannis Marketakis wrote:
> @@luca.frosini@isti.cnr.it we already have this feature when publishing records in the GR... Luca Frosini

Dec 20, 2018

07:53 PM ISTI Open Access Feature #13078 (Closed): Put the three openportal servers under backup

The hosts data is listed in the parent task. Andrea Dell'Amico

07:48 PM ISTI Open Access Bug #12670 (Closed): Memory problem

Let's see what happens on the new service, where the PHP frontend runs into its own VM.
Andrea Dell'Amico

07:45 PM ISTI Open Access Feature #12667 (Closed): New joomla portal installation (BETA)

beta is going to be hosted on the same server that hosts production. Andrea Dell'Amico

07:21 PM ISTI Open Access Feature #11601: Migrate the OpenPortal services to production machines

dnet-openportal.isti.cnr.it has been deployed. The dnet application will answer at https://dnet.openportal.isti.cnr.i... Andrea Dell'Amico

03:32 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

@roberto.cirillo@isti.cnr.it this ticket has been closed, follow the discussion in the associated Task. The problem i... Giancarlo Panichi

03:18 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

The problem here was due to an incompatibility between jdk 8 build 161 and registry service. In order to fix this inc... Roberto Cirillo

Dec 19, 2018

06:30 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

I think the issue is in the fact that the Generic Workers do not find the algorithm in the private category and they ... Gianpaolo Coro

06:13 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

I was talking about the publication on the IS done at every execution of the addAlgorithm, this is what Giancarlo is ... Lucio Lelii

03:00 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Lucio Lelii wrote:
> My fear is that what is now modifying Giancarlo is not a bug but a choice, because it's impossi... Massimiliano Assante

02:55 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

My fear is that what is now modifying Giancarlo is not a bug but a choice, because it's impossible we didn't notice i... Lucio Lelii

12:41 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

@roberto.cirillo@isti.cnr.it , Yes the same component is also present in all the dataminer*-proto instances. Giancarlo Panichi

12:34 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

@roberto.cirillo@isti.cnr.it I have already answered above this depends on the fact that that code does not behave c... Giancarlo Panichi

11:21 AM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Just two comments:
If the problem is in the dataminer-algorithms-importer, why only the gw proto instances have remo... Roberto Cirillo

11:13 AM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Hi @massimiliano.assante@isti.cnr.it , it is part of the code that was written by Gianpaolo and Lucio to install the ... Giancarlo Panichi

11:09 AM D4Science Infrastructure Incident #13029 (Closed): Private algorithm disappeared in SoBigDataLab VRE

I close this ticket Giancarlo Panichi

11:04 AM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Giancarlo Panichi wrote:
> The answer is that the dataniner*-gw-proto are also dataminer in the proto cluster, so th... Massimiliano Assante

10:55 AM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

The answer is that the dataniner*-gw-proto are also dataminer in the proto cluster, so they also execute the java cod... Giancarlo Panichi

10:25 AM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

As shown in the registry logs, the resource has been deleted several times by someone:
~~~
2018-12-18 18:28:42,18... Roberto Cirillo

10:11 AM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Giancarlo Panichi wrote:
> After investigating in depth I think there are two problems:
>
> 1. The code of addAlg... Roberto Cirillo

02:51 PM D4Science Infrastructure Incident #13066 (Closed): DataMiner algorithm on FARM/PerformFISH-KPIs not working

Yes it works now, i'll relate the ticket to the other one talking about algorithms "desaparecidos" Massimiliano Assante

02:46 PM D4Science Infrastructure Incident #13066 (Feedback): DataMiner algorithm on FARM/PerformFISH-KPIs not working

Gianpaolo Coro

02:45 PM D4Science Infrastructure Incident #13066 (In Progress): DataMiner algorithm on FARM/PerformFISH-KPIs not working

After the re-installation it is working. Could you check please? Gianpaolo Coro

02:38 PM D4Science Infrastructure Incident #13066: DataMiner algorithm on FARM/PerformFISH-KPIs not working

Gianpaolo Coro wrote:
> The error indicates that the algorithm is no more installed on the production DataMiners. I'... Roberto Cirillo

01:22 PM D4Science Infrastructure Incident #13066: DataMiner algorithm on FARM/PerformFISH-KPIs not working

The error indicates that the algorithm is no more installed on the production DataMiners. I'm going to reinstall it. ... Gianpaolo Coro

12:47 PM D4Science Infrastructure Incident #13066: DataMiner algorithm on FARM/PerformFISH-KPIs not working

Clearly this reflects on the PerformFISH KPI Form Submission app as well Massimiliano Assante

12:45 PM D4Science Infrastructure Incident #13066: DataMiner algorithm on FARM/PerformFISH-KPIs not working

Adding @roberto.cirillo@isti.cnr.it to check if it's a misconfiguration Massimiliano Assante

12:44 PM D4Science Infrastructure Incident #13066 (Closed): DataMiner algorithm on FARM/PerformFISH-KPIs not working

The error is: the computation 49d696e5-4809-461c-910d-f1457064da97 of Performfish Data Validator V2 has failed.
java... Massimiliano Assante

12:50 PM D4Science Infrastructure Task #13054 (Closed): Infrastructure-monitor: The new VO D4OS is not shown anymore

Massimiliano Assante

11:59 AM D4Science Infrastructure Task #13054 (In Progress): Infrastructure-monitor: The new VO D4OS is not shown anymore

Massimiliano Assante

12:14 PM D4Science Infrastructure Task #12384 (Closed): Provide a cronjob for restarting VREModeler service

Andrea Dell'Amico

12:13 PM D4Science Infrastructure Task #12799: Memory problems on ckan-d4s1.d4science.org

@tommaso.piccioli@isti.cnr.it @francesco.mangiacrapa@isti.cnr.it was the RAM amount increased? if not, let's do that.
Andrea Dell'Amico

11:43 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

@@luca.frosini@isti.cnr.it we already have this feature when publishing records in the GRSF_Admin (in particular when... Yannis Marketakis

11:09 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

I Understand this is an additional information added in the json of the grsf record, so at worst it won't be used in ... Aureliano Gentile

11:04 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

The solution is ok for me.
Please take into account that this behaviour will occur also on GRSF_Admin VREfor any re... Luca Frosini

Dec 18, 2018

09:02 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

After investigating in depth I think there are two problems:
1. The code of addAlgorithm that run on the DataMiner... Giancarlo Panichi

06:37 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

So, here's the thing. It disappeared again 5 minutes ago when I triggered an algorithm deployment via the DM Deployer... Massimiliano Assante

04:12 PM D4Science Infrastructure Incident #13029 (In Progress): Private algorithm disappeared in SoBigDataLab VRE

Massimiliano Assante

04:12 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Si I was told to re publish again the SortWords algorithm in the SoBigData Lab VRE and to paste the resource UID in t... Massimiliano Assante

03:00 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Just to add that last Thursday (13/12) I republished the algorithm sortWords again in SoBigDataLab (see the email I r... Massimiliano Assante

11:09 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

I am OK with that.
Technically speaking this means that we should include the database sources in the JSON serial... Yannis Marketakis

10:56 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Thanks to all, appreciated. I discussed the matter also with Anton and I showed him also the citation aspect. We thin... Aureliano Gentile

09:43 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Thanks for your answers Lino. See some comments below:
Pasquale Pagano wrote:
> Waiting for @aureliano.gentile@fa... Yannis Marketakis

09:33 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Waiting for @aureliano.gentile@fao.org, please see below my personal opinion.
> The alternatives I see are:
>
... Pasquale Pagano

09:11 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

I do not see any technical difficulties here. It is clearly a matter of decision.
I would expect that colleagues ... Yannis Marketakis

Dec 17, 2018

07:11 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

This issue has to be analyzed by FORTH. As reported, GRSF misses an information that is key for its users. This infor... Pasquale Pagano

03:00 PM D4Science Infrastructure Incident #13053: DataMiner does not show computations

There seems to be a problem with the folders shared with the old HL. @lucio.lelii@isti.cnr.it please, can you invest... Giancarlo Panichi

01:29 PM D4Science Infrastructure Incident #13053 (Closed): DataMiner does not show computations

The user marco.palma does not retrieve any computation from the DataMiner interface. The check the computations page ... Gianpaolo Coro

02:51 PM D4Science Infrastructure Task #13054 (Closed): Infrastructure-monitor: The new VO D4OS is not shown anymore

The new VO D4OS is missing on every infrastructure-monitor.
Please could you re enable it on Production and PreProdu... Roberto Cirillo

11:40 AM D4Science Infrastructure Incident #13051: Unable to add Generic Resourec to Scope

you are welcome Roberto Cirillo

11:11 AM D4Science Infrastructure Incident #13051: Unable to add Generic Resourec to Scope

Thank you Luca Frosini

11:07 AM D4Science Infrastructure Incident #13051 (Closed): Unable to add Generic Resourec to Scope

Added. The problem was due to the ResourceManager service. Roberto Cirillo

11:01 AM D4Science Infrastructure Incident #13051 (In Progress): Unable to add Generic Resourec to Scope

Roberto Cirillo

09:10 AM ISTI Open Access Feature #11601: Migrate the OpenPortal services to production machines

> * mysql should only on the backend server
mysql is used by d-net and by the portals; if you prefer a single instal... Anonymous

Dec 15, 2018

10:41 AM D4Science Infrastructure Support #13052 (Closed): Please allow postgres database connection to gcat service

This task was already done. I created a ticket for future references Luca Frosini

10:38 AM D4Science Infrastructure Support #13052 (Closed): Please allow postgres database connection to gcat service

The database is ckan_prod_aginfra which is hosted on ckan-pg-d4s.d4science.org.
The gcat service is hosted on gcat.d... Luca Frosini

Dec 14, 2018

06:38 PM D4Science Infrastructure Incident #13051 (Closed): Unable to add Generic Resourec to Scope

I'm not able to add the resource with id '23d827cd-ba8e-4d8c-9ab4-6303bdb7d1db' to the scope '/d4science.research-inf... Luca Frosini

05:34 PM D4Science Infrastructure Task #13050 (Closed): Try to improve CKAN 2.6.X performance by adding fixes released for CKAN 2.7.X

We know that the CKAN system 2.6.X (currently installed for the gCube Catalogues) degrades its performance after a ce... Francesco Mangiacrapa

05:22 PM ISTI Open Access Feature #11601 (In Progress): Migrate the OpenPortal services to production machines

Michele Artini wrote:
>
> 1. backend.openportal.isti.cnr.it (solr 5.5.x + mongo + mysql)): 4 cpus, 16GB Ram, ~64G... Andrea Dell'Amico

02:36 PM ISTI Open Access Feature #11601: Migrate the OpenPortal services to production machines

Vm created (and now running):
dnet-openportal.isti.cnr.it (146.48.87.206), alias dnet.openportal.isti.cnr.it
... Tommaso Piccioli

04:41 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Hi all,
The field ***refers_to*** is used to automatically create the field ***Database Source*** and to add the G... Luca Frosini

02:08 PM StocksAndFisheriesKB Bug #13026 (Closed): Approved records loose some information and data

I made an automatic procedure to check the records which fixed the ones with missing information.
Everything should ... Luca Frosini

12:24 PM D4Science Infrastructure Task #13043 (Closed): Provide a cronjob for removing old access.log files on IS-Registry instances

cronjob added to all the Registry instances. Roberto Cirillo

12:10 PM D4Science Infrastructure Task #13043 (In Progress): Provide a cronjob for removing old access.log files on IS-Registry instances

Roberto Cirillo

11:50 AM D4Science Infrastructure Task #13043 (Closed): Provide a cronjob for removing old access.log files on IS-Registry instances

Roberto Cirillo

Dec 13, 2018

05:48 PM D4Science Infrastructure Task #12527: Undeploy FARM/AquaMaps VRE

The Aquamaps VRE has been dismissed and all the related resources cleaned. I'm going to assign this ticket to @lucio.... Roberto Cirillo

04:31 PM D4Science Infrastructure Upgrade #13039 (Completed): Infra-gateways fourth update to gCube 4.13.0

Massimiliano Assante

03:42 PM D4Science Infrastructure Upgrade #13039 (In Progress): Infra-gateways fourth update to gCube 4.13.0

Massimiliano Assante

02:49 PM D4Science Infrastructure Upgrade #13039 (Planned): Infra-gateways fourth update to gCube 4.13.0

Massimiliano Assante

02:47 PM D4Science Infrastructure Upgrade #13039 (Completed): Infra-gateways fourth update to gCube 4.13.0

This update fixes the Incident #13013, it contains the Messages portlet only:
* messages-2.2.0-4.13.1-174717
On... Massimiliano Assante

Dec 12, 2018

05:52 PM D4Science Infrastructure Task #9115 (Closed): VRE Modeler fails to undeploy VREs under gCubeApps

Resources cleaned Roberto Cirillo

05:02 PM D4Science Infrastructure Task #9115 (In Progress): VRE Modeler fails to undeploy VREs under gCubeApps

I'm going to run a script in order to clean all the ServiceEndpoints and GenericResources under gCubeApps. Roberto Cirillo

05:38 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Thanks, sorry but I think there is a misunderstanding, that list is for GRSF records and those groups should be there... Aureliano Gentile

05:26 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

@aureliano.gentile@fao.org about the point 1.
I'm going to remove the legacy groups from GRSF Catalogue (they will b... Francesco Mangiacrapa

05:37 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Giancarlo Panichi wrote:
> The problem is that there is no resource on the IS and it is also missing the SecondaryTy... Massimiliano Assante

04:36 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

The problem is that there is no resource on the IS and it is also missing the SecondaryType:
~~~
<SecondaryTyp... Giancarlo Panichi

04:32 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Look this morning I have not republished in RPrototypingLab for sure (and it says .... Simple method that sort words ... Massimiliano Assante

04:18 PM D4Science Infrastructure Incident #13029: Private algorithm disappeared in SoBigDataLab VRE

Looking on svn it seems that SAI and DMPoolManager have correctly published the algorithm on svn, and for what I see ... Giancarlo Panichi

03:24 PM D4Science Infrastructure Incident #13029 (Closed): Private algorithm disappeared in SoBigDataLab VRE

On Monday 10 Dec, I could see my method named SortWords (Python Examples category), also took the screenshot attached... Massimiliano Assante

04:28 PM D4Science Infrastructure Task #12252 (Closed): VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

Massimiliano Assante wrote:
> > > There is a confusion here Roberto, look at the VO!, at the time of the ticket (Jun... Roberto Cirillo

04:07 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

> > There is a confusion here Roberto, look at the VO!, at the time of the ticket (June 2017) we moved the 3 VREs abo... Massimiliano Assante

04:01 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

Massimiliano Assante wrote:
> Roberto Cirillo wrote:
> > Roberto Cirillo wrote:
> > > This is the list of all the ... Roberto Cirillo

03:52 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

Roberto Cirillo wrote:
> Roberto Cirillo wrote:
> > This is the list of all the VREs that are present only on infra... Massimiliano Assante

03:45 PM D4Science Infrastructure Task #12252 (Feedback): VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

iMarineBoardVRE is back.
Finally, all the VREs have been successfully restored. I'm going to re assign this ticket ... Roberto Cirillo

03:21 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

iLKNAK_Aquaculture restored Roberto Cirillo

02:38 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

SustainableBlueEconomy restored Roberto Cirillo

12:35 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

STRATOS_AQUACULTURES restored Roberto Cirillo

12:13 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

NHREUS_Aquaculture restored Roberto Cirillo

11:21 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

MARKELLOS_Aquaculture is back Roberto Cirillo

04:00 PM StocksAndFisheriesKB Bug #13026: Approved records loose some information and data

We will fix the issue asap. @luca.frosini@isti.cnr.it is working to fix it Francesco Mangiacrapa

12:37 PM StocksAndFisheriesKB Bug #13026 (In Progress): Approved records loose some information and data

The data published in the two VREs are exactly the same. You will see that Catches for example are included (under St... Yannis Marketakis

10:33 AM StocksAndFisheriesKB Bug #13026 (Closed): Approved records loose some information and data

In example
Sebastes mentella East Greenland (Subarea 27.14) Iceland Grounds (Division 27.5.a)
by comparing the r... Aureliano Gentile

10:11 AM D4Science Infrastructure Task #11522 (Closed): Provide a cronjob for removing old access.log files

The job works properly Roberto Cirillo

Dec 11, 2018

06:01 PM D4Science Infrastructure Incident #13007 (Closed): The maven disk is full and a first try to cleanup the space failed

The scheduled activity "empty basket" has released ~200 GB of disk.
It will run every day and likely it will take mu... Tommaso Piccioli

05:05 PM D4Science Infrastructure Task #11522 (Feedback): Provide a cronjob for removing old access.log files

Roberto Cirillo

05:04 PM D4Science Infrastructure Task #11522 (In Progress): Provide a cronjob for removing old access.log files

Roberto Cirillo

04:48 PM D4Science Infrastructure Task #11522 (Closed): Provide a cronjob for removing old access.log files

Added also on root-vo collector. I'm going to set to feedback this ticket in order to check tomorrow if the job works... Roberto Cirillo

03:58 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

Added to the following hosts:
collector-d4os.d4science.org
collector-parthenosvo.d4science.org
collector-opena... Roberto Cirillo

03:46 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

Added to:
~~~
collector-d4research.d4science.org
node24.p.d4science.research-infrastructures.eu
collector-sbd.d... Roberto Cirillo

12:54 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

The cronjob have been properly installed on collector-pre. I'm going to install it on the other hosts.
Roberto Cirillo

12:32 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

Ok. I'm going to run it, in order to test it, in preproduction environment, on collector-pre.d4science.org host. Roberto Cirillo

03:49 PM D4Science Infrastructure Task #12599 (Closed): Is it possible to install rJava on RStudioLab?

Andrea Dell'Amico

11:36 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

GRSF restored and GRSF_Admin was already present Roberto Cirillo

10:55 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

Roberto Cirillo wrote:
> This is the list of all the VREs that are present only on infrastructure-monitor and that s... Roberto Cirillo

10:50 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

GALAXIDI VRE restored Roberto Cirillo

Dec 10, 2018

07:23 PM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

See https://support.d4science.org/projects/aginfraplut/wiki/GCore_based_services for the documentation on how to conf... Andrea Dell'Amico

10:33 AM D4Science Infrastructure Task #11522: Provide a cronjob for removing old access.log files

Again the same problem on collector-d4research and collector-openaire. This time I'm not going to remove the logs man... Roberto Cirillo

07:15 PM D4Science Infrastructure Task #12384 (Feedback): Provide a cronjob for restarting VREModeler service

The wiki entry is here: https://support.d4science.org/projects/aginfraplut/wiki/GCore_based_services . I also added a... Andrea Dell'Amico

07:04 PM D4Science Infrastructure Task #12384 (In Progress): Provide a cronjob for restarting VREModeler service

Andrea Dell'Amico

06:17 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

ForkysVRE restored Roberto Cirillo

05:08 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

EllinikaPsariaVRE restored. Roberto Cirillo

04:42 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

EMPHASIS VRE restored. Roberto Cirillo

03:51 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

D4STeam has been restored Roberto Cirillo

03:33 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

CollabResearch is back Roberto Cirillo

12:47 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

CWP_Secretariat is back Roberto Cirillo

12:29 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

CFE_DATA restored Roberto Cirillo

12:04 PM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

Aquamaps removed (it was still present on infra monitor) and Aquabiotech restored. Roberto Cirillo

11:15 AM D4Science Infrastructure Task #12252: VRE Modeler FARM VO reports only 12 VREs whereas they are circa 28

AlieiaVRE is back. Roberto Cirillo

04:58 PM D4Science Infrastructure Incident #13013 (Closed): Upgrade the Messsages Portlet to gCube 4.13

The fix will be released with gCube 4.13.1 Francesco Mangiacrapa

04:38 PM D4Science Infrastructure Incident #13013: Upgrade the Messsages Portlet to gCube 4.13

Your analysts is correct can you release the fix on 4.13.1? Thank you Massimiliano Assante

03:32 PM D4Science Infrastructure Incident #13013 (Closed): Upgrade the Messsages Portlet to gCube 4.13

The Messages Portlet is not updated to gCube 4.13. We need to upgrade it.
The last build is available at http://et... Francesco Mangiacrapa

01:20 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

Andrea Dell'Amico wrote:
> The plugin is installed everywhere.
Great! Thanks a lot! Lars Valentin

01:18 PM D4Science Infrastructure Incident #12894 (Closed): Update of FSK plugin failed

The plugin is installed everywhere.
Andrea Dell'Amico

01:08 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

The installation of the plugin is ongoing. Andrea Dell'Amico

12:34 PM D4Science Infrastructure Incident #12894 (In Progress): Update of FSK plugin failed

Lars Valentin wrote:
> Hey Andrea,
>
> could you please point me to the parts where you check if any KNIME proces... Andrea Dell'Amico

12:17 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

Hey Andrea,
could you please point me to the parts where you check if any KNIME process is running, before removin... Lars Valentin

12:15 PM D4Science Infrastructure Incident #12894 (Feedback): Update of FSK plugin failed

I changed the playbook and the cron job configuration. The plugin installation still fails:
~~~
eclipse.buildId=u... Andrea Dell'Amico

12:11 PM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

1: indeed if no legacy records are published it make sense get rid of that group (but to be kept in the GRSF Admin VR... Aureliano Gentile

11:43 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

Yannis Marketakis wrote:
> The publishing of the records was completed a couple of hours after updating the ticket. ... Francesco Mangiacrapa

08:24 AM StocksAndFisheriesKB Task #12861: Purge old records of the public GRSF Catalogue

The publishing of the records was completed a couple of hours after updating the ticket.
However, I still see that ... Yannis Marketakis

Dec 09, 2018

01:28 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

Thank you Andrea,
since we have combined our repositories, `https://dl.bintray.com/silebat/fsklab_icpmf`
does in... Lars Valentin

12:36 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

Here is the ansible knime role, anyway. I've not reworked it to supporto multiple knime versions yet.
Andrea Dell'Amico

12:31 PM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

The daily update is performed by a cron job that runs a shell script:
~~~
#!/bin/bash
RETVAL=
RETVAL_WF=
DATE=... Andrea Dell'Amico

10:26 AM D4Science Infrastructure Incident #12894: Update of FSK plugin failed

Hi Andrea,
The problem was in the update site of FSK_Lab which cause problems in the cache of P2 repository of KNIME... ahmad swaid

01:23 PM D4Science Infrastructure Incident #13007: The maven disk is full and a first try to cleanup the space failed

Yes, the deleted items was in the trash.
I scheduled a "empty trash" activity, on a daily schedule it will check a... Tommaso Piccioli

12:38 PM D4Science Infrastructure Incident #13007: The maven disk is full and a first try to cleanup the space failed

Agree. At this point we should wait for the upgrade to a newer release. We'll try to work it out ASAP. Andrea Dell'Amico