D4science

Aug 31, 2018

06:58 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Lars Valentin wrote:
> Good morning Andrea,
>
> I just added a dummy workflow for you to be imported into KNIME f... Andrea Dell'Amico

03:09 PM D4Science Infrastructure Task #12364 (Closed): Move the data directory of the new geonetwork installations outside the webapp directory

Right now the geonetwork servers have their data inside `webapps/geonetwork/WEB-INF/data/`. To move it away there is ... Andrea Dell'Amico

Aug 30, 2018

07:01 PM D4Science Infrastructure Task #12354 (Feedback): Rewrite of performfish.d4science.net to performfish.d4science.org on infra gateways

The redirection is in place, handled by haproxy.
Andrea Dell'Amico

06:52 PM D4Science Infrastructure Task #12354 (In Progress): Rewrite of performfish.d4science.net to performfish.d4science.org on infra gateways

Andrea Dell'Amico

05:31 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

One thing about the knime executable path: do you need an absolute path? because the `knime` command is available in ... Andrea Dell'Amico

05:29 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

After fixing the plugins repository URLs, I had to run the plugins installation tasks three times on my test machine ... Andrea Dell'Amico

03:05 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Never mind, I guess I've found at least one mistake from my part: the plugins repositories do not use the point versi... Andrea Dell'Amico

03:04 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Only two installed correctly, I still have to look at the error logs of the other ones:
~~~
org.knime.features.ba... Andrea Dell'Amico

12:56 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Lars Valentin wrote:
> Andrea Dell'Amico wrote:
> > Hi Lars, the infrastructure problems were solved yesterday even... Andrea Dell'Amico

Aug 29, 2018

05:34 PM D4Science Infrastructure Task #12323: Update the oVirt cluster to the latest release

The upgrade didn't fix the gluster leak, btw. The correct fix has been just published. Andrea Dell'Amico

Aug 28, 2018

12:03 PM D4Science Infrastructure Incident #12334 (Closed): Please remove orientdb from startup services on orientdb02-d4s.d4science.org and orientdb03-d4s.d4science.org

Fixed. Now the service is restarted only if it's meant to be running. Andrea Dell'Amico

12:01 PM D4Science Infrastructure Incident #12334 (In Progress): Please remove orientdb from startup services on orientdb02-d4s.d4science.org and orientdb03-d4s.d4science.org

I've found the culprit: the letsencrypt hook started the service after a certificate renewal without respecting the f... Andrea Dell'Amico

11:03 AM D4Science Infrastructure VM Creation #11954 (Closed): VM to host the GRSF-services-updater service

OK, thanks. Andrea Dell'Amico

Aug 27, 2018

03:01 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service

Yannis Marketakis wrote:
> The services look fine. Thanks.
>
> The configuration of the services (i.e. passing th... Andrea Dell'Amico

Aug 24, 2018

04:32 PM D4Science Infrastructure Incident #12326 (Closed): GARR OpenStack dashboard and CT1 regions are unreachable

Andrea Dell'Amico

04:11 PM D4Science Infrastructure Incident #12326 (Feedback): GARR OpenStack dashboard and CT1 regions are unreachable

The virtuoso instance is back online too, I just asked Alessia to check if it's working correctly.
Andrea Dell'Amico

11:15 AM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

The situation is back to normal but for the virtuoso instance, the GARR staff is investigating the problem.
Andrea Dell'Amico

12:51 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Hi Lars, the infrastructure problems were solved yesterday evening. I'll start working on the KNIME installation next... Andrea Dell'Amico

Aug 23, 2018

03:29 PM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

You're right. I see from It's stuck on the early boot phase. I tried to stop/start it, but without results. I'm addin... Andrea Dell'Amico

02:49 PM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

Update: All the servers but the ones in `error` state are up and reachable again.
The up to date list of VMs in `e... Andrea Dell'Amico

Aug 22, 2018

11:57 AM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

The situation worsened again. I asked the GARR staff for news again today, they did not answer at all yesterday. Andrea Dell'Amico

Aug 21, 2018

01:12 AM D4Science Infrastructure Task #11831: Explore new letsencrypt clients to add wildcard certificates support

All the load balancers are now using the wildcard certificates.
Important note for the subdomains: every subdomain... Andrea Dell'Amico

Aug 20, 2018

08:12 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Lars, we are suffering problems with one of our infrastructures so I cannot complete the installation until they have... Andrea Dell'Amico

07:57 PM D4Science Infrastructure Task #11831 (Closed): Explore new letsencrypt clients to add wildcard certificates support

The playbook works correctly and I adjusted the haproxy setup so that it works correctly with any of the two letsencr... Andrea Dell'Amico

05:19 PM D4Science Infrastructure Task #11831: Explore new letsencrypt clients to add wildcard certificates support

I have the scripting moslty done. It's ugly because all the parameters must be passed on the command line and some op... Andrea Dell'Amico

Aug 19, 2018

12:28 PM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

The GARR staff found that migrating a VM that has connection problems restores the networking
VMs that are now wor... Andrea Dell'Amico

Aug 18, 2018

08:03 PM D4Science Infrastructure Task #12241: Setup New gateway open-science.it

@tommaso.piccioli@isti.cnr.it I don't see open-science.it listed at http://mx.isti.cnr.it/dnsmanager, but the officia... Andrea Dell'Amico

02:33 PM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

Pasquale Pagano wrote:
> With the operations performed so far, are the DM clusters working again (even with reduced ... Andrea Dell'Amico

Aug 16, 2018

09:20 PM D4Science Infrastructure Task #12323 (Closed): Update the oVirt cluster to the latest release

Andrea Dell'Amico

09:20 PM D4Science Infrastructure Task #12323: Update the oVirt cluster to the latest release

dlib18x is up again. I didn't really solved the problem, I'm going to investigate it when I have some time to spare. ... Andrea Dell'Amico

08:34 PM D4Science Infrastructure Incident #12326 (In Progress): GARR OpenStack dashboard and CT1 regions are unreachable

Andrea Dell'Amico

01:16 PM D4Science Infrastructure Incident #12326: GARR OpenStack dashboard and CT1 regions are unreachable

I just asked again. Andrea Dell'Amico

11:43 AM D4Science Infrastructure Incident #12326 (Closed): GARR OpenStack dashboard and CT1 regions are unreachable

Since, yesterday, all the VMs hosted at GARR CT1 region are not reachable, and so it is the OpenStack management da... Andrea Dell'Amico

Aug 15, 2018

02:56 PM D4Science Infrastructure Task #12323: Update the oVirt cluster to the latest release

dlib18x failed to boot after the upgrade. Tomorrow I'll try to fix the problem from the console. Andrea Dell'Amico

Aug 14, 2018

02:34 PM D4Science Infrastructure Task #12323: Update the oVirt cluster to the latest release

dlib19x and dlib17x upgraded Andrea Dell'Amico

01:38 PM D4Science Infrastructure Task #12323: Update the oVirt cluster to the latest release

dlib16x upgraded. Andrea Dell'Amico

Aug 12, 2018

07:05 PM D4Science Infrastructure Task #12323: Update the oVirt cluster to the latest release

dlib15x upgraded. Andrea Dell'Amico

07:04 PM D4Science Infrastructure Task #12323 (In Progress): Update the oVirt cluster to the latest release

I added a wiki page that documents the upgrade steps. here: https://support.d4science.org/projects/aginfraplut/wiki/U... Andrea Dell'Amico

07:03 PM D4Science Infrastructure Task #12323 (Closed): Update the oVirt cluster to the latest release

It should solve a big memory leak in the glusterfs service Andrea Dell'Amico

Aug 08, 2018

02:51 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service

Luca Frosini wrote:
> Normally it should be added in distro directory as described here:
>
> https://wiki.gcube-s... Andrea Dell'Amico

Aug 07, 2018

06:39 PM D4Science Infrastructure Task #12321: Install a new backup server (with backuppc SW)

I added nagios monitoring and also the prometheus node exporter. The prometheus exporter starts correctly on dlib4bac... Andrea Dell'Amico

12:51 PM D4Science Infrastructure VM Creation #11954 (Feedback): VM to host the GRSF-services-updater service

The services are available at updater.grsf.d4science.org/{grsf-api,grsf-services-updater} on both http and https (no ... Andrea Dell'Amico

Aug 03, 2018

06:53 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

I'll start with the knime installation next week.
Andrea Dell'Amico

12:50 PM D4Science Infrastructure Task #12315 (Rejected): geoserver1-p-spatial.d4science.org logs everything ad DEBUG level

Ah sorry, I looked at the logs this morning and I forgot to open the ticket until some minutes ago. In the meantime y... Andrea Dell'Amico

12:27 PM D4Science Infrastructure Task #12315 (Rejected): geoserver1-p-spatial.d4science.org logs everything ad DEBUG level

It seems that it runs the old broken logback configuration. Andrea Dell'Amico

11:57 AM D4Science Infrastructure Task #12312 (Closed): Increase RAM on geoserver.d4science.org

OK, so we'll handle the other ones on request, when needed. Andrea Dell'Amico

11:37 AM D4Science Infrastructure Task #12312 (Feedback): Increase RAM on geoserver.d4science.org

The heap size was incremented too. Andrea Dell'Amico

11:14 AM D4Science Infrastructure Task #12312: Increase RAM on geoserver.d4science.org

The VM is now running with 5GB of RAM. Andrea Dell'Amico

11:12 AM D4Science Infrastructure Task #12312 (In Progress): Increase RAM on geoserver.d4science.org

On this one only? we also have geoserver2/3/4 with the same hardware resources. The requests are not evenly distribut... Andrea Dell'Amico

Aug 02, 2018

02:47 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents

OK, thanks. Andrea Dell'Amico

02:34 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents

It also happens for /d4science.research-infrastructures.eu/FARM/D4STeam, but I don't know why. @roberto.cirillo@isti.... Andrea Dell'Amico

01:04 PM D4Science Infrastructure Incident #12303 (Closed): The production Sharelatex instance is not using a permanent storage for the users documents

There's no way to add a volume to an existing container. As we are running a specific version with lots of local cust... Andrea Dell'Amico

01:01 PM D4Science Infrastructure Incident #12303 (In Progress): The production Sharelatex instance is not using a permanent storage for the users documents

Andrea Dell'Amico

02:38 PM D4Science Infrastructure Support #12308: Workspace folders in Foster VRE not accessible by some users also in openAIRE/OpenAIRE-Connect

@pasquale.pagano@isti.cnr.it I changed their usernames some days ago, to the ones they have on the old ldap servers. ... Andrea Dell'Amico

01:23 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service

Do we have an artifact yet? I cannot find anything in nexus. Andrea Dell'Amico

01:15 PM D4Science Infrastructure Task #12307 (Closed): Backup the container volumes

On sharelatex.d4science.org: /srv/sharelatex_data/
On docker-exec1.d4science.org: /var/lib/docker/volumes/
Andrea Dell'Amico