D4science

Aug 01, 2018

04:39 PM D4Science Infrastructure Incident #12303: The production Sharelatex instance is not using a permanent storage for the users documents

I'm going to stop the service, copy the user data outside the container, than restart the container with the external... Andrea Dell'Amico

04:38 PM D4Science Infrastructure Incident #12303 (Closed): The production Sharelatex instance is not using a permanent storage for the users documents

There was a mistake in the ansible task that launches the container instance: the syntax for the volume configuration... Andrea Dell'Amico

04:30 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Lars Valentin wrote:
> Dear Andrea,
>
> in the future we want to allow the user to run there own R models in our... Andrea Dell'Amico

Jul 31, 2018

12:51 PM D4Science Infrastructure Task #12276: To much log data on ckan-bb1.d4science.org

Yes, it's smartgears. Andrea Dell'Amico

Jul 30, 2018

08:15 PM D4Science Infrastructure Task #9826 (Closed): issue sharelatex (can't compile a whole report)

It's a resources problem, that document requires more resources that we have available. Andrea Dell'Amico

05:39 PM D4Science Infrastructure Task #12262 (Closed): Wrong Rprofile settings for the dev workspace

I also added a default mirror site for CRAN. Andrea Dell'Amico

02:45 PM D4Science Infrastructure Task #12272 (Closed): Deactive nagios monitoring and load-balancer on resource regsitry

Disabled both the nagios checks and the load balancer frontend and backend. Andrea Dell'Amico

02:30 PM D4Science Infrastructure Task #12272 (In Progress): Deactive nagios monitoring and load-balancer on resource regsitry

Andrea Dell'Amico

11:15 AM D4Science Infrastructure Task #12263: Restart Accounting Aggregator

Luca Frosini wrote:
> the host was down again because orientdb refuses the connections.
>
> Can you please check... Andrea Dell'Amico

Jul 28, 2018

02:10 PM D4Science Infrastructure Task #12263: Restart Accounting Aggregator

Luca Frosini wrote:
> Moreover I found that there are tentative connections from 146.48.122.24 (postgresql-srv-dev... Andrea Dell'Amico

Jul 27, 2018

05:58 PM D4Science Infrastructure Task #12262 (Closed): Wrong Rprofile settings for the dev workspace

I've just found this piece of code into the Rprofile that we distribute:
~~~
getCredentials<-function(){
machi... Andrea Dell'Amico

05:46 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Lars Valentin wrote:
> Andrea Dell'Amico wrote:
> > Lars Valentin wrote:
> >
> > >
> > > In the past, we have ... Andrea Dell'Amico

04:47 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

Lars Valentin wrote:
>
> In the past, we have offered to help you with maintaining your KNIME installation. I su... Andrea Dell'Amico

04:09 PM D4Science Infrastructure Support #12249 (In Progress): Need installed KNIME 3.6 and R 3.4 including the listed plugins

About the R packages: the missing ones from your list were
~~~
miniCRAN
msm
Rserve
~~~
and they will be ava... Andrea Dell'Amico

04:03 PM D4Science Infrastructure Support #12249: Need installed KNIME 3.6 and R 3.4 including the listed plugins

@lars.valentin@bfr.bund.de I see that I can download a bundle that contains all the knime extensions, but not the com... Andrea Dell'Amico

Jul 26, 2018

06:53 PM D4Science Infrastructure Task #11976: New load balancer for the tagme service

As it seems that we solved the problem with the x509 certificates, we can use services-lb.d4science.org. The rate lim... Andrea Dell'Amico

04:58 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5

Gianpaolo Coro wrote:
> Hi, the tomcat had been restarted. The fact that the test works enforces my guess that there... Andrea Dell'Amico

03:10 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5

@gianpaolo.coro@isti.cnr.it can you run some different test? I cannot explain the behaviour, the errors start on July... Andrea Dell'Amico

03:01 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5

Run more than once, it never failed. Andrea Dell'Amico

02:53 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5

The test you posted does not fail. The xml response is:
~~~
<wps:ExecuteResponse xmlns:wps="http://www.opengis.... Andrea Dell'Amico

03:23 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service

@marketak@ics.forth.gr is there a build for the two applications? Did you connect the source to our CI service?
Andrea Dell'Amico

03:20 PM D4Science Infrastructure VM Creation #11954: VM to host the GRSF-services-updater service

@luca.frosini@isti.cnr.it I need the smartgears scope here. Andrea Dell'Amico

Jul 25, 2018

08:29 PM D4Science Infrastructure Task #11980 (Closed): Add the involvement filter plugin to the d4science redmine instance

Done on both dev and production instances. Andrea Dell'Amico

08:21 PM D4Science Infrastructure Task #11980 (In Progress): Add the involvement filter plugin to the d4science redmine instance

Andrea Dell'Amico

08:08 PM D4Science Infrastructure Task #12235: New support.d4science.org static html page

I changed the nagios check, it now points to the `/login` URL.
Andrea Dell'Amico

08:04 PM D4Science Infrastructure Task #12235 (Closed): New support.d4science.org static html page

The new redmine home page is in place. Andrea Dell'Amico

06:54 PM D4Science Infrastructure Task #12235 (In Progress): New support.d4science.org static html page

I'm working on it right now. Expect some downtime. Andrea Dell'Amico

06:06 PM D4Science Infrastructure Task #12227: Encoding issue on Dataminer proto 5

Gianpaolo Coro wrote:
> Yes, the issue is weird but this morning I have verified it is just on that machine. The pro... Andrea Dell'Amico

Jul 24, 2018

04:25 PM D4Science Infrastructure Task #12227 (In Progress): Encoding issue on Dataminer proto 5

I just compared the relevant parts of dataminer4-proto and dataminer5-proto without founding any difference:
* env... Andrea Dell'Amico

Jul 23, 2018

06:52 PM D4Science Infrastructure Task #12110 (Closed): DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere

Done. Andrea Dell'Amico

06:48 PM D4Science Infrastructure Task #12110: DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere

The upgrade is running. Andrea Dell'Amico

06:42 PM D4Science Infrastructure Task #12110 (In Progress): DataMiner - Check the version of R on the DataMiner services so that the version is 3.4 everywhere

Andrea Dell'Amico

04:37 PM D4Science Infrastructure Task #12183 (Closed): Please add nagios check to monitor the correct functioning of social networking service

They are working. Andrea Dell'Amico

04:23 PM D4Science Infrastructure Task #12183 (Feedback): Please add nagios check to monitor the correct functioning of social networking service

I also added the system checks, they were missing too. Andrea Dell'Amico

04:01 PM D4Science Infrastructure Task #12183 (In Progress): Please add nagios check to monitor the correct functioning of social networking service

Andrea Dell'Amico

Jul 20, 2018

12:54 PM D4Science Infrastructure Incident #12214 (Feedback): DataMiners cannot interact with the Storage System

The disk space on the volatile mongo instance has been incremented and the server restarted. Does it solve the datami... Andrea Dell'Amico

12:53 PM D4Science Infrastructure Incident #12214 (In Progress): DataMiners cannot interact with the Storage System

Andrea Dell'Amico

12:29 PM D4Science Infrastructure Incident #12214: DataMiners cannot interact with the Storage System

I see that the mongo instance on that server is down.
So: we do not have monitoring of those instances, it seems.... Andrea Dell'Amico

12:38 PM D4Science Infrastructure Task #12215 (Closed): Increase disk space on mongo-p-vol.d4science.org

The mongo-p-vol.d4science.org stopped itself because there's enough space in `/data`
Also, for some reason that I... Andrea Dell'Amico

12:21 PM D4Science Infrastructure Incident #12213 (In Progress): Algorithms not installed on dataminer1-proto

I just removed the list of installed algorithms but I see that the cron job execution has been commented out.
I also... Andrea Dell'Amico

Jul 19, 2018

05:00 PM D4Science Infrastructure Task #11831: Explore new letsencrypt clients to add wildcard certificates support

We have a wildcard certificate, at last Andrea Dell'Amico

Jul 18, 2018

03:51 PM D4Science Infrastructure Incident #12176 (Closed): garr site is not reachable

The problem has been solved by the GARR technical support. It seems that it was caused by a problem on the Neutron ga... Andrea Dell'Amico

03:46 PM D4Science Infrastructure Task #12183: Please add nagios check to monitor the correct functioning of social networking service

Is it possible to have a *machine* token? we should not rely on personal tokens for the monitoring checks. Andrea Dell'Amico

03:15 PM D4Science Infrastructure Task #12173 (Closed): Suspend all the letsencrypt certificates renewals for 15 days

All the hosts on the d4science.org domain have been reconfigured. The situation can be monitored here: https://crt.sh... Andrea Dell'Amico

Jul 17, 2018

07:32 PM D4Science Infrastructure Task #12173: Suspend all the letsencrypt certificates renewals for 15 days

Reconfigured all the servers but the ones still unreachable at garr-ct1.
Andrea Dell'Amico

05:23 PM D4Science Infrastructure Task #12173 (In Progress): Suspend all the letsencrypt certificates renewals for 15 days

The cron job has been modified, so that we can specify the days of month (I set 1-15 for our servers) while the hour ... Andrea Dell'Amico

12:20 PM D4Science Infrastructure Incident #12176 (In Progress): garr site is not reachable

The problem is under investigation by the GARR people.
Andrea Dell'Amico

Jul 16, 2018

07:15 PM D4Science Infrastructure Task #12173: Suspend all the letsencrypt certificates renewals for 15 days

Better yet, change the cron job to run only in the first 10/15 days of the month so that we will always have a free w... Andrea Dell'Amico

07:00 PM D4Science Infrastructure Task #12173 (Closed): Suspend all the letsencrypt certificates renewals for 15 days

Let's suspend all the certificates renewals for 15 days, so that we can have a window where we can ask for new certif... Andrea Dell'Amico

04:15 PM D4Science Infrastructure Task #11976: New load balancer for the tagme service

Some resources:
https://gist.github.com/jeremyj/e964a951634f1997daea
https://serverfault.com/questions/555763/hapro... Andrea Dell'Amico

04:07 PM D4Science Infrastructure Task #12157 (Closed): Change the resolv.conf and dhclient.conf configurations on all the GARR instances

I just changed the network configuration on both the GARR regions. The new resolvers should be active in the next 24 ... Andrea Dell'Amico

03:23 PM D4Science Infrastructure Task #12157 (In Progress): Change the resolv.conf and dhclient.conf configurations on all the GARR instances

Never mind. The DNS servers provided by the DHCP service can be changed editing the `subnet` configuration from the O... Andrea Dell'Amico

Jul 11, 2018

05:46 PM D4Science Infrastructure Task #12156 (Closed): registry-parthenosvo.d4science.org: add nagios checks

Done. I also added checks for collector-parthenosvo.d4science.org.
Andrea Dell'Amico

05:43 PM D4Science Infrastructure Task #12157 (Closed): Change the resolv.conf and dhclient.conf configurations on all the GARR instances

To permanently change the resolvers on the GARR instances we need to modify the dhclient configuration, otherwise the... Andrea Dell'Amico

05:33 PM D4Science Infrastructure Task #3262 (Closed): Change the ldap authentication for the d4science subversion repository

The redbox access has been switched too. The authorized group is `cn=redbox_repo,ou=Groups,dc=d4science,dc=org`
Andrea Dell'Amico

Jul 10, 2018

05:49 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net

The certificate is ready and installed. Andrea Dell'Amico

05:05 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net

As we are not able to obtain a certificate under the d4science.org domain, has just been decided to use the `performf... Andrea Dell'Amico

12:04 PM D4Science Infrastructure Incident #12134: Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production

I've found the problem. The ldap users were filtered using the `posixAccount` objectclass. I did not add that object ... Andrea Dell'Amico

Jul 09, 2018

07:57 PM D4Science Infrastructure Incident #12134 (Feedback): Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production

I've added the user, with the password used by the dm pool manager.
Andrea Dell'Amico

07:56 PM D4Science Infrastructure Incident #12134 (In Progress): Missing SVN user "svn.d4science" in D4Science LDAP causes block of automatic DataMiner algorithms deployment on production

Andrea Dell'Amico

06:18 PM D4Science Infrastructure Task #11333 (Closed): Reconfigure jenkins-dnet.d4science.org to authenticate against ldap.d4science.org

Andrea Dell'Amico

06:17 PM D4Science Infrastructure Task #11333 (In Progress): Reconfigure jenkins-dnet.d4science.org to authenticate against ldap.d4science.org

Done. We should try to use ldap groups to enlist the authorized users. Andrea Dell'Amico

04:26 PM D4Science Infrastructure Incident #12086: ssk.parthenos-project.eu disappeared

Any news? The certificate is going to expire in three weeks, if there are no plans to restore `ssk.parthenos-project.... Andrea Dell'Amico

01:17 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net

Done. The scopes are now:
~~~
/d4science.research-infrastructures.eu/SoBigData
/d4science.research-infrastructur... Andrea Dell'Amico

12:01 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net

I just added the scope to the list in the ansible variables. Let me know when I can reconfigure the connector.
Andrea Dell'Amico

Jul 07, 2018

05:10 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net

I fixed the redirection yesterday. About the missing scope the only action I know is a restart of the container but I... Andrea Dell'Amico

Jul 06, 2018

09:46 PM D4Science Infrastructure VM Creation #12053 (Feedback): Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net

Hostname has been switched. @roberto.cirillo@isti.cnr.it fixed all the endpoint, the connector configuration has been... Andrea Dell'Amico

07:18 PM D4Science Infrastructure Task #12122 (In Progress): Please Create parthenos.aggregator@d4science.org alias email address

Andrea Dell'Amico

05:25 PM D4Science Infrastructure Task #11825: Setup New gateway performfish.d4science.net

I'm still waiting for at least a day without the embargo. I cannot foresee it, I don't know how many certifcates are ... Andrea Dell'Amico

Jul 05, 2018

07:31 PM D4Science Infrastructure Task #11332 (Closed): Change the openaire redmine instance to use ldap.d4science.org for the authentication

Done. The migration is complete, the old ldap service removed from the redmine configuration.
Andrea Dell'Amico

05:19 PM D4Science Infrastructure Task #11332 (In Progress): Change the openaire redmine instance to use ldap.d4science.org for the authentication

Andrea Dell'Amico

06:28 PM D4Science Infrastructure Task #3262: Change the ldap authentication for the d4science subversion repository

Also moved all the gcore/gcube repositories.
The last one to be handled is RedBox.
Andrea Dell'Amico

05:18 PM D4Science Infrastructure Task #3262 (In Progress): Change the ldap authentication for the d4science subversion repository

The D-Net subversion instance now authenticates against ldap.d4science.org.
I'm waiting for the confirmation of the... Andrea Dell'Amico

05:00 PM D4Science Infrastructure VM Creation #12030: Upgrade VM with Resource Registry instance

Manuele Simi wrote:
> Andrea Dell'Amico wrote:
> > Done. Can you check?
>
> Thanks. I don't have chance to check... Andrea Dell'Amico

04:41 PM D4Science Infrastructure VM Creation #12030: Upgrade VM with Resource Registry instance

Done. Can you check?
Andrea Dell'Amico

04:07 PM D4Science Infrastructure VM Creation #12030: Upgrade VM with Resource Registry instance

(sorry, wrong ticket).
I'm going to reinstall the services right now.
Andrea Dell'Amico

Jul 04, 2018

06:41 PM D4Science Infrastructure Task #11978 (Closed): Add one DNS resolver in each of the GARR regions

Andrea Dell'Amico

02:50 PM D4Science Infrastructure Docker Image #12035: Please deploy a Docker container with the "out of the box" LimeSurvey community version

Maggie Hellström wrote:
> Dear Andrea,
>
> I don't know at the moment how the LimeSurvey application inside the D... Andrea Dell'Amico

01:54 PM D4Science Infrastructure Docker Image #12035 (In Progress): Please deploy a Docker container with the "out of the box" LimeSurvey community version

Maggie Hellström wrote:
> Dear all,
>
> I've only found one technical issue so far, in that it seems that the L... Andrea Dell'Amico

Jul 03, 2018

05:20 PM D4Science Infrastructure Task #11732 (Feedback): Please install apa6 CTAN package on ShareLaTex

Well, I installed the full texlive distribution. Now everything packaged and latex related is installed. @luca.frosi... Andrea Dell'Amico

05:12 PM D4Science Infrastructure Task #11732 (In Progress): Please install apa6 CTAN package on ShareLaTex

Yes, but the part that I did not understand is if it's part of some other collection. There's no stand alone debian p... Andrea Dell'Amico

03:15 PM D4Science Infrastructure Task #11732: Please install apa6 CTAN package on ShareLaTex

@luca.frosini@isti.cnr.it I forgot the details. Did we find a package to install?
Andrea Dell'Amico

04:05 PM D4Science Infrastructure VM Creation #12030: Upgrade VM with Resource Registry instance

Manuele Simi wrote:
> I'm reopening this because there did exist problems on the node.
>
> Specifically, when I t... Andrea Dell'Amico

03:14 PM D4Science Infrastructure Task #9213 (Rejected): enable calDAV authentication on D4Science Gateways

We didn't find a way to make it work reliably. Andrea Dell'Amico

03:09 PM D4Science Infrastructure Task #11944 (Closed): Add 1 GB of RAM to accounting service instances

Andrea Dell'Amico

03:09 PM D4Science Infrastructure Task #11981 (Closed): Add a ssh shell proxy on the CT1 GARR region

Done some days ago. Andrea Dell'Amico

03:01 PM D4Science Infrastructure VM Creation #11927 (Closed): Create the new ckan instance: ckan-aginfra.d4science.org

Andrea Dell'Amico

03:01 PM D4Science Infrastructure VM Creation #12053: Create new CKAN instance for SBD catalogue: ckan.sobigdata.d4science.net

@francesco.mangiacrapa@isti.cnr.it are we ready to switch?
Andrea Dell'Amico

02:37 PM D4Science Infrastructure Task #12102 (Closed): Preproduction infrastructure: create an alias for enabling services

Done. Give the DNS servers some minutes to update the zones.
Andrea Dell'Amico

02:32 PM D4Science Infrastructure Task #12102 (In Progress): Preproduction infrastructure: create an alias for enabling services

Andrea Dell'Amico

02:29 PM D4Science Infrastructure Task #11737 (Closed): Please setup a Nextcloud instance on D4Science

Andrea Dell'Amico

12:19 PM D4Science Infrastructure Docker Image #12035 (Feedback): Please deploy a Docker container with the "out of the box" LimeSurvey community version

Andrea Dell'Amico

12:18 PM D4Science Infrastructure Docker Image #12035: Please deploy a Docker container with the "out of the box" LimeSurvey community version

Thanks for the clarifications. The application is now reachable from anywhere at https://docker-exec1.d4science.org/... Andrea Dell'Amico