D4science

Dec 07, 2017

11:46 AM D4Science Infrastructure Task #10606 (Closed): Disable nagios check on old services

In order to dismiss the message-broker and the services related to it, I've stopped the container running on the foll... Roberto Cirillo

Dec 06, 2017

12:46 PM D4Science Infrastructure Task #6501: migrate old dev (ubuntu 9) to new hosts

The following VMs have been successfully moved and the related wiki has been updated: https://wiki.d4science.org/inde... Roberto Cirillo

Dec 05, 2017

06:02 PM D4Science Infrastructure Task #9857: Evacuate the hypervisors from dlib14x to dlib19x

Tommaso Piccioli wrote:

> Host node1-d-d4s.d4science.org has been already migrated but the ghn was down since mar... Roberto Cirillo

05:10 PM D4Science Infrastructure Task #10563 (Closed): Dismiss old VMs

The following VMs should be dismissed:
~~~
node11.d.d4science.research-infrastructures.eu
node15.d.d4science.res... Roberto Cirillo

03:23 PM D4Science Infrastructure Task #6501: migrate old dev (ubuntu 9) to new hosts

* node15.d.d4science.research-infrastructures.eu ha been migrated to node13-d-d4s.d4science.org
* node14-d-d4s... Roberto Cirillo

02:22 PM D4Science Infrastructure Upgrade #10456 (Completed): ParthenosVO VO upgrade to 4.8.0

Roberto Cirillo

Dec 04, 2017

02:27 PM D4Science Infrastructure Task #10121: Deploy DataMiner service on PARTHENOS/PARTHENOS_LAB VRE

The dataminer cluster is in place. I've assigned the cloud1 cluster with the only Bionym algorithm. Please, @scarponi... Roberto Cirillo

11:42 AM D4Science Infrastructure Task #10121 (In Progress): Deploy DataMiner service on PARTHENOS/PARTHENOS_LAB VRE

Roberto Cirillo

10:31 AM D4Science Infrastructure Task #10366 (Closed): Add ParthenosVO scope to all the dataminer instances

Roberto Cirillo

09:58 AM D4Science Infrastructure Task #10521 (Closed): D4Research: Add cronjob on VREModeler service

It's needed to have a restart of the ghn running on the following host:
~~~
vremodeler-d4research.d4science.org
... Roberto Cirillo

Dec 01, 2017

06:17 PM D4Science Infrastructure Task #10504 (Feedback): SAI - Remove SAI portlets from environments that are not development VRE

Roberto Cirillo

Nov 30, 2017

03:05 PM D4Science Infrastructure Task #10495: Update nginx configuration on preprod homelibrary webapp: requests with file too big are rejected

from nginx logs I see the following error:
~~~
2017/11/30 14:51:01 [error] 630#0: *216751 client intended to send... Roberto Cirillo

Nov 29, 2017

06:46 PM D4Science Infrastructure Upgrade #10073 (Completed): D4Science Infrastructure Upgrade to gCube 4.8.0

Roberto Cirillo

06:45 PM D4Science Infrastructure Upgrade #10073 (In Progress): D4Science Infrastructure Upgrade to gCube 4.8.0

Roberto Cirillo

06:44 PM D4Science Infrastructure Upgrade #10073 (Planned): D4Science Infrastructure Upgrade to gCube 4.8.0

Roberto Cirillo

05:06 PM D4Science Infrastructure Upgrade #10454 (Completed): FARM VO upgrade to gCube 4.8.0

Roberto Cirillo

03:45 PM D4Science Infrastructure Upgrade #10454 (In Progress): FARM VO upgrade to gCube 4.8.0

Roberto Cirillo

05:04 PM D4Science Infrastructure Upgrade #10453 (Completed): gCubeApps VO upgrade to gCube 4.8.0

Roberto Cirillo

02:53 PM D4Science Infrastructure Upgrade #10453 (In Progress): gCubeApps VO upgrade to gCube 4.8.0

Roberto Cirillo

04:57 PM D4Science Infrastructure Upgrade #10458 (Completed): D4Science Root VO upgrade to gCube 4.8

Roberto Cirillo

02:06 PM D4Science Infrastructure Upgrade #10458 (In Progress): D4Science Root VO upgrade to gCube 4.8

Roberto Cirillo

04:56 PM D4Science Infrastructure Upgrade #10456 (In Progress): ParthenosVO VO upgrade to 4.8.0

Roberto Cirillo

04:14 PM D4Science Infrastructure Upgrade #10468 (Completed): SoBigData VO upgrade to 4.8.0

Roberto Cirillo

04:07 PM D4Science Infrastructure Upgrade #10468 (In Progress): SoBigData VO upgrade to 4.8.0

Roberto Cirillo

04:08 PM D4Science Infrastructure Upgrade #10455 (Completed): D4Research VO upgrade to 4.8.0

Roberto Cirillo

03:58 PM D4Science Infrastructure Upgrade #10455 (In Progress): D4Research VO upgrade to 4.8.0

Roberto Cirillo

Nov 28, 2017

06:01 PM D4Science Infrastructure Task #10478 (Closed): Dismiss old message-broker

In order to dismiss the message-broker VM
~~~
message-broker.d4science.research-infrastructures.eu
~~~
it's ... Roberto Cirillo

03:31 PM D4Science Infrastructure Upgrade #10455 (Planned): D4Research VO upgrade to 4.8.0

Roberto Cirillo

03:30 PM D4Science Infrastructure Upgrade #10468 (Planned): SoBigData VO upgrade to 4.8.0

Roberto Cirillo

10:14 AM D4Science Infrastructure Upgrade #10468: SoBigData VO upgrade to 4.8.0

**HostingNode**
*WHN to upgrade*
* **(CNR) DONE** twittermon1.d4science.org
**Smartgears services**
* *... Roberto Cirillo

10:11 AM D4Science Infrastructure Upgrade #10468 (Completed): SoBigData VO upgrade to 4.8.0

Roberto Cirillo

03:30 PM D4Science Infrastructure Upgrade #10456 (Planned): ParthenosVO VO upgrade to 4.8.0

Roberto Cirillo

10:16 AM D4Science Infrastructure Upgrade #10456: ParthenosVO VO upgrade to 4.8.0

**Configuration**
* add ParthenosVO scope to all the WHNs under the following clusters:
* **(CNR) DONE** data... Roberto Cirillo

03:30 PM D4Science Infrastructure Upgrade #10454 (Planned): FARM VO upgrade to gCube 4.8.0

Roberto Cirillo

03:28 PM D4Science Infrastructure Upgrade #10453 (Planned): gCubeApps VO upgrade to gCube 4.8.0

Roberto Cirillo

11:37 AM D4Science Infrastructure Task #10440: Please add a smart-executor instance with accounting-insert-rstudio-se-plugin on each RStudio nodes

I think this task should be reconsidered. In addition, what happens if an user has more than one home (not duplicated... Roberto Cirillo

11:16 AM D4Science Infrastructure Task #8526 (Closed): Upgrade smart-executor service in production environment

All the instances were upgraded. Roberto Cirillo

10:24 AM D4Science Infrastructure Task #10358: Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster

As explained in the description, TextCrowd is served by "dataminer-prototypes" cluster so this instance should be add... Roberto Cirillo

Nov 27, 2017

03:38 PM D4Science Infrastructure Upgrade #10455: D4Research VO upgrade to 4.8.0

**Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** tabulardata2.d4science.org
* **(CNR) DONE** dm-pool-mana... Roberto Cirillo

12:38 PM D4Science Infrastructure Upgrade #10455 (Completed): D4Research VO upgrade to 4.8.0

Roberto Cirillo

03:25 PM D4Science Infrastructure Upgrade #10454: FARM VO upgrade to gCube 4.8.0

**Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** tabulardata2.d4science.org
* **(NKUA) DONE** dewn05.madg... Roberto Cirillo

12:37 PM D4Science Infrastructure Upgrade #10454 (Completed): FARM VO upgrade to gCube 4.8.0

Roberto Cirillo

03:04 PM D4Science Infrastructure Upgrade #10458 (Planned): D4Science Root VO upgrade to gCube 4.8

Roberto Cirillo

03:00 PM D4Science Infrastructure Upgrade #10458: D4Science Root VO upgrade to gCube 4.8

**HostingNode**
* **(CNR) DONE** data.d4science.org
* **(CNR) DONE** data2-d4s.d4science.org
*WHN to upgrade... Roberto Cirillo

02:50 PM D4Science Infrastructure Upgrade #10458 (Completed): D4Science Root VO upgrade to gCube 4.8

Roberto Cirillo

02:44 PM D4Science Infrastructure Upgrade #10453: gCubeApps VO upgrade to gCube 4.8.0

**Hosting Nodes**
*WHN to upgrade*
* **(CNR) DONE** dm-pool-manager-proto.d4science.org
* **(CNR) DONE** ... Roberto Cirillo

12:34 PM D4Science Infrastructure Upgrade #10453 (Completed): gCubeApps VO upgrade to gCube 4.8.0

Roberto Cirillo

12:39 PM D4Science Infrastructure Upgrade #10456 (Completed): ParthenosVO VO upgrade to 4.8.0

Roberto Cirillo

Nov 21, 2017

05:06 PM D4Science Infrastructure Upgrade #10074 (Completed): /gcube/preprod upgrade to gCube 4.8.0

Roberto Cirillo

Nov 20, 2017

10:52 AM D4Science Infrastructure Incident #10372: Authorization service: pgpool problem

I've tried to restart postgres and pgpool but nothing change. After that, I've tried to perform the procedure to fa... Roberto Cirillo

10:18 AM D4Science Infrastructure Incident #10372 (Closed): Authorization service: pgpool problem

The pgpool cluster seems to be blocked. I've tried the restore procedure without success. Please, could you take a lo... Roberto Cirillo

Nov 17, 2017

05:00 PM D4Science Infrastructure Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once

Tommaso Piccioli wrote:
> Tommaso Piccioli wrote:
> > portal-si.isti.cnr.it shows established connection on port 27... Roberto Cirillo

03:09 PM D4Science Infrastructure Task #10368: DM Pool Manager not working (improvement on the notification mechanism)

Ciro Formisano wrote:
> Please, may you grant me the access to the machine hosting DMPM instance? I need to have a l... Roberto Cirillo

02:32 PM D4Science Infrastructure Task #10368 (Feedback): DM Pool Manager not working (improvement on the notification mechanism)

I think this is not a tomcat problem.
I've checked the logs: the file 446642b0-7def-4c4a-b9e9-a1a241088bee is not pr... Roberto Cirillo

02:30 PM D4Science Infrastructure Task #10368 (In Progress): DM Pool Manager not working (improvement on the notification mechanism)

Roberto Cirillo

10:17 AM D4Science Infrastructure Task #10366 (Closed): Add ParthenosVO scope to all the dataminer instances

It's needed to add the following scope and the related key in the ansible playbook on every dataminer instances:
~... Roberto Cirillo

Nov 16, 2017

07:00 PM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

Marek Horst wrote:
> This time I got:
>
> ~~~
> <!DOCTYPE html>
> <html>
> <head>
> <title>Error</title>
> <... Roberto Cirillo

12:22 PM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

Marek Horst wrote:
> Roberto Cirillo wrote:
> > Before retry could you try to do a double compression of the file l... Roberto Cirillo

09:40 AM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

Before retry could you try to do a double compression of the file like "tar.gz"? Roberto Cirillo

05:26 PM D4Science Infrastructure VM Creation #10356: Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin

The plugin is up and running. The related service endpoint is correctly registered to the infrastructure. Please @luc... Roberto Cirillo

03:36 PM D4Science Infrastructure Task #10358 (Closed): Dataminer-cluster: Integrate the dm-192-168-100-104.garr.d4science.org instance into the garr cluster

The instance above has been removed from TextCrowd VRE and now it should be integrated into the dataminer-garr cluste... Roberto Cirillo

02:24 PM D4Science Infrastructure Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once

I think the problem is on mongo3 node. This node has the same configuration and the same workload of mongo2 but the l... Roberto Cirillo

Nov 15, 2017

07:13 PM D4Science Infrastructure VM Creation #10356 (Closed): Provide new VM for hosting a smart-executor service instance with the "accounting-insert-storage-se-plugin" plugin

The playbook for accounting-insert-storage-se-plugin is available on ansible but it should be modified because previo... Roberto Cirillo

06:46 PM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

I've tried to check the integrity with gzip -t and I confirm, the file is not complete. @andrea.dellamico@isti.cnr.it... Roberto Cirillo

06:43 PM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

Unfortunately the file named other-text-20171017.gz in the storage layer is 28635607040 so I think it is not complete. Roberto Cirillo

11:59 AM D4Science Infrastructure Task #10279 (Feedback): Large file upload limit on the workspace

Roberto Cirillo

04:08 PM D4Science Infrastructure Incident #10306 (Closed): mongo3-p-d4s.d4science.org went out of memory more than once

Thank you @tommaso.piccioli@isti.cnr.it I'm going to close this ticket. Roberto Cirillo

02:32 PM D4Science Infrastructure Incident #10306: mongo3-p-d4s.d4science.org went out of memory more than once

Andrea Dell'Amico wrote:
> Roberto Cirillo wrote:
> > It cannot be the cause of the issue #10279 since it is a Seco... Roberto Cirillo

Nov 14, 2017

11:35 AM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

The file epmc-meta-20171017.gz is present on our storage with the following size: 8753058643 bytes.
However this fi... Roberto Cirillo

09:27 AM D4Science Infrastructure Task #10279 (In Progress): Large file upload limit on the workspace

Roberto Cirillo

Nov 13, 2017

06:37 PM D4Science Infrastructure Task #10279: Large file upload limit on the workspace

Marek Horst wrote:
> I managed to upload successfully 8GB file. It took 49 mins.
>
> When I tried to upload 12GB ... Roberto Cirillo

11:36 AM D4Science Infrastructure Incident #10306 (Feedback): mongo3-p-d4s.d4science.org went out of memory more than once

It cannot be the cause of the issue #10279 since it is a Secondary member and the writing are done on the primary mem... Roberto Cirillo

11:30 AM D4Science Infrastructure Incident #10306 (In Progress): mongo3-p-d4s.d4science.org went out of memory more than once

Roberto Cirillo