D4science

Nov 20, 2017

07:08 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

@lucio.lelii@isti.cnr.it that log is from the DataMiner not from the script (see the class name).
The R script wri... Gianpaolo Coro

Nov 19, 2017

10:06 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

I have just run more than 1000 executions of the CMSY algorithm on dataminer7-p-d4s.d4science.org and I cannot run ev... Gianpaolo Coro

09:07 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

The issue is the following and the logs are plenty of them:
~~~
15:04:46.339 [pool-9-thread-4] DEBUG GenericRScri... Gianpaolo Coro

Nov 18, 2017

02:20 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

All the functional tests will be run by Lucio @lucio.lelii@isti.cnr.it on Monday. Meanwhile, for another task I'm run... Gianpaolo Coro

Nov 17, 2017

04:01 PM D4Science Infrastructure Task #10368: DM Pool Manager not working (improvement on the notification mechanism)

The email is sent correctly and contains the issue but the message sent to SAI doesn't. @g.panichi@isti.cnr.it says t... Gianpaolo Coro

03:16 PM D4Science Infrastructure Task #10368: DM Pool Manager not working (improvement on the notification mechanism)

My colleague @g.panichi@isti.cnr.it discovered the issue. The "foreach" package was declared as a required package bu... Gianpaolo Coro

01:06 PM D4Science Infrastructure Task #10368 (Closed): DM Pool Manager not working (improvement on the notification mechanism)

I'm trying to deploy the CMSY_2 algorithm in the RPrototypingLab VRE, but I get this 500 error from the pool manager ... Gianpaolo Coro

Nov 16, 2017

06:26 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

@lucio.lelii@isti.cnr.it could you run the tests please? The machines are required by tomorrow. Gianpaolo Coro

04:46 PM D4Science Infrastructure Support #10357 (Closed): Support Vector Machines not working

We have switched to the SVMs of Rapid Miner which are equal to the one we were using but it is the "Svm" class instea... Gianpaolo Coro

02:43 PM D4Science Infrastructure Support #10357: Support Vector Machines not working

So one way could be to make SVMs use the same lib version of RapidMiner? Gianpaolo Coro

01:54 PM D4Science Infrastructure Support #10357: Support Vector Machines not working

I add that RapidMiner is one of the most important frameworks integrated by the DataMiner (together with Weka), thus ... Gianpaolo Coro

01:32 PM D4Science Infrastructure Support #10357: Support Vector Machines not working

No one is. RapidMiner is a third party framework. The current integrated version is 5, the last that was Open Source.... Gianpaolo Coro

12:40 PM D4Science Infrastructure Support #10357 (Closed): Support Vector Machines not working

SVMs are not working on the DataMiner. If this depends on the conflict is in the libsmv inside RapidMiner, this can b... Gianpaolo Coro

Nov 14, 2017

04:42 PM D4Science Infrastructure Incident #10345 (Rejected): Gis Viewer does not produce images correctly

The Gis Viewer stretches the images and does not manage Thrreds layers properly.
Example of the issue and related ... Gianpaolo Coro

Nov 10, 2017

03:02 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

Yes, go on please. Gianpaolo Coro

12:32 PM D4Science Infrastructure Task #10223 (In Progress): Provide machines for FAO course

Andrea, in order to run our tests we need those machines behind one dedicated cluster. Currently, there is at least a... Gianpaolo Coro

Nov 09, 2017

11:09 AM D4Science Infrastructure VRE #10151: PerformFish VRE

I need to be manager of the VRE and have access to the accounting. People are subscribing. Gianpaolo Coro

Nov 08, 2017

07:25 PM D4Science Infrastructure Task #10274: The IRDTunaAtlas R package does not build anymore

Hi Julien @julien.barde@ird.fr, the GitHub package "juldebar/IRDTunaAtlas" was requested to be installed on our machi... Gianpaolo Coro

06:44 PM D4Science Infrastructure Task #10273 (Closed): DataMiner algorithms local testing

Local machine testing of DM algorithms does not work anymore. Further, there are sudden issues now on the Support Vec... Gianpaolo Coro

04:05 PM D4Science Infrastructure Task #10223: Provide machines for FAO course

Since the course will be made in the StockAssessment VRE, the machines should be assigned to the cloud1 cluster. Gianpaolo Coro

Nov 06, 2017

05:12 PM D4Science Infrastructure Task #10223 (Closed): Provide machines for FAO course

Between 21-24 Nov. FAO will do a course using the infrastructure and running CMSY. Since this is a highly demanding p... Gianpaolo Coro

01:52 PM D4Science Infrastructure VRE #10151: PerformFish VRE

@massimiliano.assante@isti.cnr.it , Could you please remove the Stat. Alg. Importer tab from the VRE? Since there is ... Gianpaolo Coro

Nov 03, 2017

11:36 AM D4Science Infrastructure Task #5447: Provide maintainable solution for hosting static web-apps + SFTP access for easy maintenance

Sorry, I did not give explanation because I hoped to be able to discuss this with you in person. Gianpaolo Coro

Nov 02, 2017

12:18 PM D4Science Infrastructure VRE #10151: PerformFish VRE

Thanks for the VRE, but currently none of the applications work. Gianpaolo Coro

12:16 PM D4Science Infrastructure Task #10177 (Closed): Install the CMSY-FAST algorithm in the StockAssessment VRE

It works, thanks! Gianpaolo Coro

12:21 AM D4Science Infrastructure Task #10177 (Closed): Install the CMSY-FAST algorithm in the StockAssessment VRE

The CMSY 2 FAST process should be installed in the StockAssessment VRE, i.e. in the cloud1.d4science.org cluster
... Gianpaolo Coro

11:34 AM D4Science Infrastructure Task #10187 (Closed): Enhance SAI

Here are some key enhancement that would improve the usability and the quality of the system:
- avoid users to put... Gianpaolo Coro

11:12 AM D4Science Infrastructure Support #10175: DataMiner not working in RPrototypingLab

After rebooting the Workspace service the process has begun to work again. The logs issue should be investigated anyw... Gianpaolo Coro

12:27 AM D4Science Infrastructure Incident #10176: SAI is not working in the RPrototypingLab

In particular the issue is due to the fact that my folder
Workspace > SAI Support > SAI_WEBTG_V2 > Target
is "... Gianpaolo Coro

Nov 01, 2017

02:53 PM D4Science Infrastructure Incident #10176 (Closed): SAI is not working in the RPrototypingLab

Publication requests get stuck forever. I think this is related to #10175 and some support service of DM is not working. Gianpaolo Coro

02:27 PM D4Science Infrastructure Support #10175 (Closed): DataMiner not working in RPrototypingLab

The logs of the computations are no more visible, thus I cannot debug. An error is always reported pointing at logs, ... Gianpaolo Coro

Oct 31, 2017

04:40 PM D4Science Infrastructure VRE #10151: PerformFish VRE

The official one is here: http://performfish.eu/wp-content/uploads/2017/08/PerformFishLogo-01.jpg
from http://perf... Gianpaolo Coro

03:29 PM D4Science Infrastructure VRE #10151: PerformFish VRE

The access policy is right. As for the basic functionalities, I meant social network, token widget and the default ot... Gianpaolo Coro

03:14 PM D4Science Infrastructure VRE #10151 (Released): PerformFish VRE

Next week a VRE should be presented at the PerformFish EU project, in which we are involved as technological partners... Gianpaolo Coro

Oct 30, 2017

11:20 AM D4Science Infrastructure Task #9826: issue sharelatex (can't compile a whole report)

Hi Taha, the issue was that the R code was not using the workspace_interaction.r source, but only the ShareLatex defa... Gianpaolo Coro

Oct 27, 2017

01:24 PM D4Science Infrastructure Task #9826: issue sharelatex (can't compile a whole report)

Could you upload it again on the Workspace, please? Gianpaolo Coro

12:43 AM D4Science Infrastructure Task #9826: issue sharelatex (can't compile a whole report)

I have shared the new 'fad_drift_compilation' project with you and I'm going step-by-step. I'm stuck at line 90 becau... Gianpaolo Coro

Oct 26, 2017

11:35 PM D4Science Infrastructure Task #9826: issue sharelatex (can't compile a whole report)

Hi Taha, since Andrea has verified nothing is wrong at server side, I will try to give it a look. Gianpaolo Coro

Oct 25, 2017

05:48 PM D4Science Infrastructure VM Creation #10060: TextCrowd DataMiner - create a new DataMiner instance for TextCrowd

Since this is a machine for text analysis and this domain make a lot of use of RAM, I would go for a "big" Garr machi... Gianpaolo Coro