D4science

Jul 11, 2017

03:14 PM D4Science Infrastructure Task #9238 (Closed): Make RStudio available in D4Research/ICES_IntroToREnv VRE

I've added the following instances:
~~~
ip-90-147-166-171.ct1.garrservices.it
ip-90-147-166-173.ct1.garrservices... Roberto Cirillo

11:49 AM D4Science Infrastructure Task #9238 (In Progress): Make RStudio available in D4Research/ICES_IntroToREnv VRE

Roberto Cirillo

10:51 AM D4Science Infrastructure Incident #9243 (Closed): Old ResourceManager found on devNext environemnt

The devNext and NextNext environment have been restored Roberto Cirillo

10:19 AM D4Science Infrastructure Incident #9243 (In Progress): Old ResourceManager found on devNext environemnt

Roberto Cirillo

10:17 AM D4Science Infrastructure Incident #9243 (Closed): Old ResourceManager found on devNext environemnt

There is an old ResourceManager (v 2.1.0-3.10.0) on devNext environment installed on node
collector-dev.d4science.... Roberto Cirillo

10:02 AM D4Science Infrastructure Incident #9241: dataminer4-p-d4s: Too many open files

@luca.frosini@isti.cnr.it Is it a strange behavior or we need to increase the fd limit? what do you recommend? Roberto Cirillo

09:48 AM D4Science Infrastructure Incident #9241 (Closed): dataminer4-p-d4s: Too many open files

I've restarted the container and the problem is solved.
The libraries used for accounting are the following:
~~... Roberto Cirillo

09:37 AM D4Science Infrastructure Incident #9241 (In Progress): dataminer4-p-d4s: Too many open files

Roberto Cirillo

09:35 AM D4Science Infrastructure Incident #9241 (Closed): dataminer4-p-d4s: Too many open files

The dataminer instance hosted on dataminer4-p-d4s has a fd limit set to 16000.
There are 15887 connection opened t... Roberto Cirillo

09:58 AM D4Science Infrastructure Task #9102: Upgrade Couchbase Production Cluster

Please, @tommaso.piccioli@isti.cnr.it remember me when I have to edit the ServiceEndpoint resource for inserting the ... Roberto Cirillo

Jul 10, 2017

03:04 PM D4Science Infrastructure Incident #9193 (Closed): Smaph app: error from remote server

Roberto Cirillo

09:48 AM D4Science Infrastructure Incident #9193 (In Progress): Smaph app: error from remote server

Again, the same problem
~~~
Querying http://wikisense.mkapp.it:80/tag/tag?lang=en&method=base&epsilon=0.2&minLink... Roberto Cirillo

10:29 AM D4Science Infrastructure Task #9121: VREs deployed on FARM have disappeared from VRE-Modeler

please update this ticket Roberto Cirillo

Jul 06, 2017

04:42 PM D4Science Infrastructure Incident #9193 (Closed): Smaph app: error from remote server

Now it's working fine. Roberto Cirillo

09:57 AM D4Science Infrastructure Incident #9193 (Closed): Smaph app: error from remote server

I see the following exception in catalina.out. The problem seems to be the same of #8986
~~~
java.io.IOExcepti... Roberto Cirillo

11:25 AM D4Science Infrastructure Task #9197 (Closed): mongo1-d-d4s doesn't start automatically after a reboot

Please could you check also the start script for the following hosts:
~~~
mongo2-d-d4s.d4science.org
mongo3-d-d4... Roberto Cirillo

Jul 04, 2017

04:02 PM D4Science Infrastructure Task #9146 (In Progress): ResourceManager: upgrade servicemap on all the production instances

Roberto Cirillo

03:21 PM D4Science Infrastructure Task #9146 (Closed): ResourceManager: upgrade servicemap on all the production instances

In order to maintain the cross-vo resources aligned, it's needed to update the common-scope-maps library on all the R... Roberto Cirillo

03:51 PM D4Science Infrastructure Task #9148 (Closed): Align mandatory resources uunder d4s

Roberto Cirillo

03:36 PM D4Science Infrastructure Task #9148 (In Progress): Align mandatory resources uunder d4s

Roberto Cirillo

03:25 PM D4Science Infrastructure Task #9148 (Closed): Align mandatory resources uunder d4s

It's needed to align all the mandatory resources under the d4science.research-infrastructures.eu infrastructure.
The... Roberto Cirillo

Jul 03, 2017

02:42 PM D4Science Infrastructure Task #9115 (In Progress): VRE Modeler fails to undeploy VREs under gCubeApps

I had removed them manually. I had deleted the GenericResources but, in this way, not all the resources were correctl... Roberto Cirillo

Jun 30, 2017

06:16 PM D4Science Infrastructure Task #9123: MongoDB: upgrade dev cluster to version 3.2

@tommaso.piccioli@isti.cnr.it I could stop the mongodb nodes when you are ready. Please tell me when you are ready t... Roberto Cirillo

06:10 PM D4Science Infrastructure Task #9123 (Closed): MongoDB: upgrade dev cluster to version 3.2

The upgrade will be done in the following way:
* Upgrade secondary members of the replica set.
* Step down the ... Roberto Cirillo

06:09 PM D4Science Infrastructure Task #9122 (New): Upgrade MongoDB to 3.4 version

We should upgrade our mongoDB clusters to version 3.2. Now we have installed the version 3.0, so this upgrade can be ... Roberto Cirillo

11:09 AM D4Science Infrastructure Incident #8903: Cannot move shared folder into private folder

any update on this? Roberto Cirillo

Jun 29, 2017

04:54 PM D4Science Infrastructure Upgrade #8648 (Completed): D4Science Infrastructure Upgrade to gCube 4.5

Roberto Cirillo

04:53 PM D4Science Infrastructure Upgrade #8648 (In Progress): D4Science Infrastructure Upgrade to gCube 4.5

Roberto Cirillo

04:53 PM D4Science Infrastructure Upgrade #8868 (Completed): D4Research VO upgrade to gCube 4.5

Roberto Cirillo

04:40 PM D4Science Infrastructure Incident #8986 (Closed): Smaph app: error from remote werver

It's ok now. Sorry for the delay Roberto Cirillo

04:36 PM D4Science Infrastructure Task #6297 (Closed): Smaph webapp: Nagios check fails

Roberto Cirillo

12:40 PM D4Science Infrastructure Task #9104 (Closed): data.d4science: remove rootLogger inside webapps

In order to have only one log4j properties definition on the following hosts:
~~~
data1-d4s.d4science.org
data2-... Roberto Cirillo

10:39 AM D4Science Infrastructure Task #6242 (Closed): Enable D4Science "Geo services" on D4Research VO to support Data Miner geo algorithms

I guess this ticket can be closed. We have now several "geo services" cluster running on D4Research VO. I'm going to ... Roberto Cirillo

10:14 AM D4Science Infrastructure Task #9017 (Rejected): New MongoDB Cluster for preprod

Roberto Cirillo

Jun 28, 2017

12:45 PM D4Science Infrastructure Task #8591 (Closed): Create Virtual Organisation for the PARTHENOS Project: ParthenosVO

The new VO is in place Roberto Cirillo

12:44 PM D4Science Infrastructure Task #9092 (Closed): Add VREModeler instance to ParthenosVO

Roberto Cirillo

12:33 PM D4Science Infrastructure Task #9092 (In Progress): Add VREModeler instance to ParthenosVO

Roberto Cirillo

12:32 PM D4Science Infrastructure Task #9092 (Closed): Add VREModeler instance to ParthenosVO

We could share the following VREModeler instance in ParthenosVO:
~~~
node44.p.d4science.research-infrastructure... Roberto Cirillo

12:28 PM D4Science Infrastructure Task #9066 (Closed): ParthenosVO: Install IS-Collector and ResourceManager services

Roberto Cirillo

10:50 AM D4Science Infrastructure Task #9080: Infrastructure-monitor: Enable new VO ParthenosVO

Yesterday night the new VO was present in the following monitor: https://pre.d4science.org/infrastructure-monitor
No... Roberto Cirillo

Jun 27, 2017

06:47 PM D4Science Infrastructure Task #9066 (In Progress): ParthenosVO: Install IS-Collector and ResourceManager services

The IS-Collector service has been successfully installed Roberto Cirillo

03:02 PM D4Science Infrastructure Task #9066 (Paused): ParthenosVO: Install IS-Collector and ResourceManager services

Roberto Cirillo

02:56 PM D4Science Infrastructure Task #9066 (In Progress): ParthenosVO: Install IS-Collector and ResourceManager services

Roberto Cirillo

02:22 PM D4Science Infrastructure Task #9066 (Closed): ParthenosVO: Install IS-Collector and ResourceManager services

The new IS-Collector instance should be installed on:
~~~
collector-parthenosvo.d4science.org:8080
~~~
The ne... Roberto Cirillo

06:46 PM D4Science Infrastructure Task #9067 (Closed): ParthenosVO: install Registry and Notifier services

Roberto Cirillo

02:23 PM D4Science Infrastructure Task #9067 (Closed): ParthenosVO: install Registry and Notifier services

The services will be deployed on the following VM:
~~~
registry-parthenosvo.d4science.org
~~~
Roberto Cirillo

05:17 PM D4Science Infrastructure Task #9080 (Closed): Infrastructure-monitor: Enable new VO ParthenosVO

You can find the updated common-scope-maps (1.7.0-SNAPSHOT) on our nexus. Roberto Cirillo

03:06 PM D4Science Infrastructure VM Creation #8960 (In Progress): Provide new VM collector-parthenosvo.d4science.org

We need the jdk 7 (OpenJDK is ok) as specified in the description. I've found the following version:
~~~
gcube@c... Roberto Cirillo

02:39 PM D4Science Infrastructure Task #9065: ParthenosVO: provide the ServiceMap

I've updated the common-scope-maps to version 1.0.7 Roberto Cirillo

02:38 PM D4Science Infrastructure Task #9065 (Closed): ParthenosVO: provide the ServiceMap

Roberto Cirillo

02:25 PM D4Science Infrastructure Task #9065 (In Progress): ParthenosVO: provide the ServiceMap

Roberto Cirillo

02:18 PM D4Science Infrastructure Task #9065 (Closed): ParthenosVO: provide the ServiceMap

It's needed to create the new ServiceMap file for the Edison VO and to upgrade the common-scope-maps library with the... Roberto Cirillo

02:14 PM D4Science Infrastructure Task #8591 (In Progress): Create Virtual Organisation for the PARTHENOS Project: ParthenosVO

Roberto Cirillo

Jun 26, 2017

04:27 PM D4Science Infrastructure Incident #9044: File Delete operation is not working with the Workspace

I see the following exception in catalina.out of workspace-repository node:
~~~
26.06.2017 16:22:50.794 [ajp-bio-... Roberto Cirillo

11:14 AM D4Science Infrastructure Incident #9008 (Closed): algorithmsBot/runAlgorithmsBot.sh going berserk

The problem was due to a missing resource on gCubeApps scope (DataAccess-HomeLibraryWebapp). For this reason it was n... Roberto Cirillo

10:52 AM D4Science Infrastructure Task #8591: Create Virtual Organisation for the PARTHENOS Project: ParthenosVO

Roberto Cirillo wrote:
> Massimiliano Assante wrote:
> > Is the ParthenosVO ready? @roberto.cirillo@isti.cnr.it we'... Roberto Cirillo

10:40 AM D4Science Infrastructure Task #8591: Create Virtual Organisation for the PARTHENOS Project: ParthenosVO

Massimiliano Assante wrote:
> Is the ParthenosVO ready? @roberto.cirillo@isti.cnr.it we're late
There are two sub... Roberto Cirillo

Jun 22, 2017

05:30 PM D4Science Infrastructure Incident #8986: Smaph app: error from remote werver

The problem is still there. Roberto Cirillo

10:34 AM D4Science Infrastructure Task #8982: Enable Service Endpoint in the (preproduction) preECO VRE

Kostas Kakaletris wrote:
> * @roberto.cirillo@isti.cnr.it , by the way, would it be OK if the same resource was be... Roberto Cirillo

10:18 AM D4Science Infrastructure Task #8978 (Feedback): Enable DBEndpoint service in the (preproduction) preECO VRE

Roberto Cirillo

10:17 AM D4Science Infrastructure Task #8978: Enable DBEndpoint service in the (preproduction) preECO VRE

@denispyr@i2s.gr please, could you add your error log or some exception when you open a ticket, if it's possible? Wit... Roberto Cirillo

Jun 21, 2017

03:11 PM D4Science Infrastructure Task #8982 (Feedback): Enable Service Endpoint in the (preproduction) preECO VRE

Denis Pyriochos wrote:
> This resource is available to preVRE and Dorne. Please make it available to preECO, as well... Roberto Cirillo

10:19 AM D4Science Infrastructure Task #8982 (Feedback): Enable Service Endpoint in the (preproduction) preECO VRE

I had already added the serviceEndpoint named SimulFishGrowth also present in the preVRE VRE.
This is the only servi... Roberto Cirillo

10:18 AM D4Science Infrastructure Task #8982 (In Progress): Enable Service Endpoint in the (preproduction) preECO VRE

Roberto Cirillo

03:00 PM D4Science Infrastructure Task #8934 (Feedback): Enable Data Miner service in the (preproduction) preECO VRE

Paolo Scarponi wrote:
> I have aligned the pre-prod dataminer to the cluster behind the BiodiversityLab VRE, which i... Roberto Cirillo

09:38 AM D4Science Infrastructure Incident #8986 (Closed): Smaph app: error from remote werver

I see the following exception in catalina.out when a query is performed. The problem is due to remote server Exceptio... Roberto Cirillo

Jun 19, 2017

06:23 PM D4Science Infrastructure Task #8934: Enable Data Miner service in the (preproduction) preECO VRE

I've added the dataminer instance and all the required resources to the new VRE.
I've also added the SIMULFISHKPIS ... Roberto Cirillo

05:44 PM D4Science Infrastructure Task #8934 (In Progress): Enable Data Miner service in the (preproduction) preECO VRE

Roberto Cirillo

06:05 PM D4Science Infrastructure Task #8978 (Closed): Enable DBEndpoint service in the (preproduction) preECO VRE

Roberto Cirillo

06:02 PM D4Science Infrastructure Task #8979 (Closed): Nagios: switch check from collector-d4research:8000 to resourcemanager-d4research.d4science.org

The resource manager instance of D4Research VO has been transferred from collector-d4research.d4science.org:8000 to r... Roberto Cirillo

05:26 PM D4Science Infrastructure VM Creation #8779 (Closed): Create new VM for ResourceManager on D4Research

The ResourceManager service is running now on the new node.
I've stopped the old resource-manager instance running ... Roberto Cirillo

10:12 AM D4Science Infrastructure Task #8953 (Closed): Update Jdk on all dataminer instances

Roberto Cirillo

10:09 AM D4Science Infrastructure Upgrade #8648 (Planned): D4Science Infrastructure Upgrade to gCube 4.5

Roberto Cirillo

Jun 16, 2017

03:57 PM D4Science Infrastructure Task #8953 (In Progress): Update Jdk on all dataminer instances

Roberto Cirillo

Jun 15, 2017

12:34 PM D4Science Infrastructure Task #8962 (Closed): dataminer@cnr instances: enable authorizeChild option on every scope

In order to decrease the number of calls to Registry services, it's needed to enable the authorizeChild option on eac... Roberto Cirillo

11:46 AM D4Science Infrastructure VM Creation #8960 (Closed): Provide new VM collector-parthenosvo.d4science.org

The new VM should host the gCore Collector service and the ResourceManager gCore service for ParthenosVO Virtual Orga... Roberto Cirillo

11:36 AM D4Science Infrastructure VM Creation #8959 (Closed): Provide new VM registry-parthenosvo.d4science.org

The new VM should host the registry and Notifier gCore services for ParthenosVO Virtual Organization.
It's needed ... Roberto Cirillo

11:30 AM D4Science Infrastructure Task #8687 (Rejected): Move collector-edison.d4science.org to collector-parthenosvo.d4science.org

Roberto Cirillo

11:22 AM D4Science Infrastructure Task #8687 (In Progress): Move collector-edison.d4science.org to collector-parthenosvo.d4science.org

Roberto Cirillo

11:30 AM D4Science Infrastructure Task #8688 (Rejected): Move registry-edison.d4science.org to registry-parthenosvo.d4science.org

Roberto Cirillo

11:29 AM D4Science Infrastructure Task #8689 (Rejected): [VREModeler] Remove edisonVO from node44.p.d4science.research-infrastructures.eu

Roberto Cirillo

Jun 14, 2017

07:04 PM D4Science Infrastructure Task #8953 (Closed): Update Jdk on all dataminer instances

It's needed to update the jdk to java8 on all dataminer instances:
In particular we need to update the following c... Roberto Cirillo

06:59 PM D4Science Infrastructure Incident #8949 (Closed): Java version mismatching causes SAI failure

I've update the jdk to jdk8 in the prototypes and genericworkers-proto clusters. I've also restored dataminer1-pre in... Roberto Cirillo

06:08 PM D4Science Infrastructure Incident #8949: Java version mismatching causes SAI failure

dataminer1-pre is running now on RPrototypingLab Roberto Cirillo

04:35 PM D4Science Infrastructure Incident #8949: Java version mismatching causes SAI failure

From this ticket #8424 seems all works well with Java8. So, I think we should upgrade the jdk on preproduction datami... Roberto Cirillo

Jun 13, 2017

05:08 PM D4Science Infrastructure Task #8932 (Closed): Deploy VRE Modeler service on /gcube/preprod Virtual Organisation

The service is ready to use Roberto Cirillo