Andrea Dell'Amico's activity
From Oct 11, 2016 to Nov 09, 2016
Nov 09, 2016
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07:25 PM D4Science Infrastructure Task #5680 (Feedback): New VM for hosting Registry and Notifier instances
- The server is ready. There is no reverse proxy and no https.
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07:19 PM D4Science Infrastructure Task #5680: New VM for hosting Registry and Notifier instances
- provisioning is running. At the end, the gcube user will be available with the container start/stop scripts ready to ...
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06:47 PM D4Science Infrastructure Task #5680 (In Progress): New VM for hosting Registry and Notifier instances
- DNS data: registry-d4research.d4science.org. IN A 146.48.122.65
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07:25 PM D4Science Infrastructure Task #5678 (Feedback): new VM for IS-Collector instance
- The server is ready. There is no reverse proxy and no https.
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07:19 PM D4Science Infrastructure Task #5678: new VM for IS-Collector instance
- provisioning is running. At the end, the gcube user will be available with the container start/stop scripts ready to ...
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06:46 PM D4Science Infrastructure Task #5678 (In Progress): new VM for IS-Collector instance
- DNS data: collector-d4research.d4science.org. IN A 146.48.122.63
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06:34 PM D4Science Infrastructure Task #5636: Create New VM exploratories.d4science.org
- DNS data: `exploratories.d4science.org. IN A 146.48.122.62`
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06:33 PM D4Science Infrastructure Task #5636: Create New VM exploratories.d4science.org
- smartgears scopes:
~~~
/d4science.research-infrastructures.eu/SoBigData
/d4science.research-infrastructures.eu/... -
06:31 PM D4Science Infrastructure Task #5636: Create New VM exploratories.d4science.org
- @roberto.trasarti@isti.cnr.it I need the app contexts to configure the reverse proxy that is going to run in front of...
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06:24 PM D4Science Infrastructure Task #5636 (In Progress): Create New VM exploratories.d4science.org
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06:21 PM D4Science Infrastructure Task #5697 (Closed): Add HA to the authorization dev pgpool cluster
- Done. Some parameters where also changed to increment the configuration reliability.
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02:33 PM D4Science Infrastructure Task #5697 (In Progress): Add HA to the authorization dev pgpool cluster
- Shared IP: auth-db-dev-d4s.d4science.org. IN A 146.48.122.61
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02:31 PM D4Science Infrastructure Task #5697 (Closed): Add HA to the authorization dev pgpool cluster
- We need the same exact environment to debug issues.
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10:52 AM D4Science Infrastructure Incident #5687 (Feedback): SimulFishGrowthData cannot contact postgres user
- I just gave access to the DB(s) to all the 88.197.53.0/24 network. Let me know if it's working.
Nov 04, 2016
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07:56 PM D4Science Infrastructure Task #5656 (Closed): backup the accounting postgresql instance(s)
- A backup of one of the two instances is sufficient.
Here we do not run a daily backup script because the WAL archivi... -
07:51 PM D4Science Infrastructure Task #5655 (Closed): Backup db-gateway.d4science.org
- The postgresql backups live here: `/var/lib/pgsql/backups/`.
It's the right opportunity to test the procedure descri... -
07:43 PM D4Science Infrastructure Task #5653 (Closed): Do not store the user token inside the get-scopes script
- Fixed the second part too.
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06:18 PM D4Science Infrastructure Task #5653 (In Progress): Do not store the user token inside the get-scopes script
- I just pushed a commit for the first part. Now working on the second one.
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06:17 PM D4Science Infrastructure Task #5653 (Closed): Do not store the user token inside the get-scopes script
- Right now we are storing the user token inside the get-scopes script. This is a security problem and it means that an...
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07:41 PM D4Science Infrastructure Incident #5654 (Closed): HomeLibrary webapp: PermGen OutOfMemory
- The VM has been restarted. There was a problem at boot time because the main dns server inside /etc/resolv.conf was w...
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06:33 PM D4Science Infrastructure Incident #5654 (In Progress): HomeLibrary webapp: PermGen OutOfMemory
- Reconfigured to give it 6GB of ram. A reboot is required
Nov 03, 2016
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02:43 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- The library has been replaced on all the dataminer servers.
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02:42 PM D4Science Infrastructure Task #5565 (Closed): Create a cronjob for restarting thredds.d4science.org
- Done.
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01:50 PM D4Science Infrastructure Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
- OK, I'll find a way.
Nov 02, 2016
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10:18 PM D4Science Infrastructure Task #5595: Provide a new VM for a smart-executor instance
- Done.
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10:18 PM D4Science Infrastructure Task #5596: Provide a new VM for a smart-executor instance
- Done.
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09:43 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- Fixed. It works now.
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06:10 PM D4Science Infrastructure Task #5590 (Feedback): DataMiner as Generic Worker
- The three nodes are online. They are behind `dataminer-genericworkers.d4science.org` for both http and https.
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05:04 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- Provisioning is running. When ready, I'll update the haproxy configuration.
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01:51 PM D4Science Infrastructure Task #5590 (In Progress): DataMiner as Generic Worker
- Hostnames and IPs are going to be:
~~~
dataminer1-genericworkers.d4science.org 146.48.122.39
dataminer2-genericw... -
04:21 PM D4Science Infrastructure Task #5616 (Closed): https certificate for gemex.d4science.org
- Done.
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04:20 PM D4Science Infrastructure Task #5618 (Closed): Add gemex.d4science.org to production HA Proxy (infra gateways)
- added to the dns as infra-lb.d4science.org CNAME.
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03:36 PM D4Science Infrastructure Task #5618 (In Progress): Add gemex.d4science.org to production HA Proxy (infra gateways)
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03:07 PM D4Science Infrastructure Task #5606 (Closed): Configure haproxy so that the authorization service connections are sticky
- It works. The config lines added to the authorization backends are:
~~~
balance leastconn
stick-ta... -
11:14 AM D4Science Infrastructure Task #5606 (In Progress): Configure haproxy so that the authorization service connections are sticky
- @lucio.lelii@isti.cnr.it I have a candidate solution to be tested. haproxy will use a table of source IPs, with entri...
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10:58 AM D4Science Infrastructure Task #5606 (Closed): Configure haproxy so that the authorization service connections are sticky
- The authorization service does not use session cookies.
haproxy has to be configured to enable sticky sessions even ... -
01:22 PM D4Science Infrastructure Task #5610: Assign geonetwork.d4science.org alias
- The CNAME has been moved.
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01:19 PM D4Science Infrastructure Task #5610 (In Progress): Assign geonetwork.d4science.org alias
- The old production VM is geoserver-last.d4science-ii.research-infrastructures.eu, btw
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01:02 PM D4Science Infrastructure Task #5608: Improve OrientDB ansible script
- Luca Frosini wrote:
>
> Can I launch it with the following command?
> ./run.sh orientdb.yml -i inventory/hosts.de... -
12:36 PM D4Science Infrastructure Task #5608: Improve OrientDB ansible script
- Luca Frosini wrote:
> Orient DB ansible script should be enhanced with the following features:
>
> * possibility ...
Oct 31, 2016
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06:33 PM D4Science Infrastructure Task #2220 (Closed): Configure the provisioned smartgears nodes with a web proxy in front of them
- nginx with https is now the default when using the ansible playbooks.
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06:31 PM D4Science Infrastructure Task #205 (Feedback): Automate the installation and configuration of the geonetwork servers
- We only need the completion of #5508.
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06:27 PM D4Science Infrastructure Task #5546 (Closed): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
- The new profile is available to all the existing users and it will be installed to the new ones.
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06:26 PM D4Science Infrastructure Task #3070 (Closed): Provide a way of starting and stopping a list of VMs by some users
- Services have evolved in a different way. Not needed anymore.
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06:08 PM D4Science Infrastructure Task #5595 (Feedback): Provide a new VM for a smart-executor instance
- The VM is up and you have root access to it.
I've updated the ansible inventory and created the group:
~~~
[sm... -
05:26 PM D4Science Infrastructure Task #5595 (In Progress): Provide a new VM for a smart-executor instance
- hostname and IP will be: social-indexer.d4science.org 146.48.122.33
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06:07 PM D4Science Infrastructure Task #5596 (Feedback): Provide a new VM for a smart-executor instance
- The VM is up and you have root access to it.
I've updated the ansible inventory and created the group:
~~~
[sm... -
05:25 PM D4Science Infrastructure Task #5596 (In Progress): Provide a new VM for a smart-executor instance
- hostname and IP will be: accounting-aggregator.d4science.org 146.48.122.24
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05:57 PM D4Science Infrastructure Task #5601 (Closed): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
- Kostas Kakaletris wrote:
> You can add checks for the new elastic search cluster (index nodes). You had tests for th... -
04:35 PM D4Science Infrastructure Task #5601: Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
- Done.
We are testing the smartgears wsdl as the availability check. If you have more specific URLs for the various ... -
04:26 PM D4Science Infrastructure Task #5601 (In Progress): Nagios checks changes for NKUA's hosts and services after gcube 4.1.0 upgrade
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04:53 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- One more question: can I have the list of scopes where those servers will be available?
Oct 28, 2016
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05:11 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- The expanded list of generic workers that will be terminated:
~~~
node3.d4science.org
node11.d4science.org
node... -
02:15 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- So, 3GB of ram, 2 CPUs, 12 GBs of disk (but I'll make them bigger, the R packages and dataminer occupy a lot of space...
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04:05 PM D4Science Infrastructure Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
- Andrea Dell'Amico wrote:
> Marco Cornolti wrote:
> > Hi! I fixed this yesterday and replied via e-mail but it was n... -
10:39 AM D4Science Infrastructure Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
- Marco Cornolti wrote:
> Hi! I fixed this yesterday and replied via e-mail but it was not added here, dunno why. Re-s... -
09:40 AM D4Science Infrastructure Incident #5589: The tagme webapp doesn't work anymore after the smartgears ugprade
- This problem was fixed (by @cornolti@di.unipi.it ?) but there's a new one impacting the service.
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03:58 PM D4Science Infrastructure Task #5594: nagios checks for the new authorization service
- @lucio.lelii@isti.cnr.it can you provide an URL to check if the application is working correctly?
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03:56 PM D4Science Infrastructure Task #5594 (Closed): nagios checks for the new authorization service
- Need to check postgresql and the authorization webapp
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03:54 PM D4Science Infrastructure Task #5592 (Closed): Remove old nagios check
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01:30 PM D4Science Infrastructure Task #5592 (Feedback): Remove old nagios check
- Done. Removed from the DNS, too.
The image disks are still on dlib21x and dlib23x. Can be removed?
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01:17 PM D4Science Infrastructure Task #5592 (In Progress): Remove old nagios check
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03:42 PM D4Science Infrastructure Task #5353: Database + endpoint needed
- I've also seen accesses coming from 88.197.53.20. I added both the IPs to the postgresql ACLs.
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10:51 AM D4Science Infrastructure Task #5353: Database + endpoint needed
- Denis Pyriochos wrote:
> this is the only static ip accessing the database.
Is this valid for the dev and prepro... -
09:27 AM D4Science Infrastructure Task #5353 (Feedback): Database + endpoint needed
- Denis Pyriochos wrote:
> Also, I get the error
>
> 10:11:43 PM: Error: FATAL: no pg_hba.conf entry for host ... -
03:38 PM D4Science Infrastructure Task #5139 (Feedback): New VM for hosting a new istance of tabulardata service
- Provisioned with nginx and https (optional).
The DB creation was also automated.
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10:07 AM D4Science Infrastructure Task #5451 (Closed): Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
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09:58 AM D4Science Infrastructure Task #4371 (Closed): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
- Script and cron jobs have been installed on all the dataminer servers.
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09:45 AM D4Science Infrastructure Task #2175 (Closed): Dismiss rstudio.d.d4science.research-infrastructures.eu and install a new rstudio-d-d4s.d4science.org similar to rstudio.d4science.org
- Completed a long time ago.
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09:42 AM D4Science Infrastructure Incident #5591: The new authorization service stops responding
- There is no out of memory or other symptom of resource exhaustion on the servers.
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09:38 AM D4Science Infrastructure Incident #5591 (Closed): The new authorization service stops responding
- It seems that the authorization service is not able to handle the amount of requests that come from the tagme service...
Oct 27, 2016
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08:28 PM D4Science Infrastructure Task #205: Automate the installation and configuration of the geonetwork servers
- The basic services are covered by the provisioning. The last missing part is the geonetwork app.
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08:04 PM D4Science Infrastructure Task #5353 (Feedback): Database + endpoint needed
- I've just created the db named `SimulFishGrowth_prod`. You can access it with the same user and password of the other...
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06:42 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- Can you confirm that these are the VMs that we can destroy?
~~~
node3.d4science.org
node[11:13].d4science.org
n... -
06:37 PM D4Science Infrastructure Task #5590: DataMiner as Generic Worker
- Gianpaolo Coro wrote:
>
> ~~~
> dataminer.genericworkers.d4science.org
> ~~~
dataminer-genericworkers.d4sci... -
06:30 PM D4Science Infrastructure Incident #5589 (Closed): The tagme webapp doesn't work anymore after the smartgears ugprade
- Tagme is not working after the upgrade to the new smartegears 2. On the smartgears front all is working correctly, bu...
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06:25 PM D4Science Infrastructure Task #5588 (Feedback): VM smartforms.d4science.org can be dismissed
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06:24 PM D4Science Infrastructure Task #5588 (In Progress): VM smartforms.d4science.org can be dismissed
- Powered off. Disks and configuration are still available on dlib27x.dom0.research-infrastructures.eu
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06:12 PM D4Science Infrastructure Task #4842 (Closed): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
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06:11 PM D4Science Infrastructure Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
- I cleaned up all the local users. Now all the users authenticate against ldap.
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04:50 PM D4Science Infrastructure Incident #5587 (Closed): Broken apt package repositories on node65.d4science.org
- Automatic package deployment failed on that node because there were broken source repositories defined:
~~~
W: Fa... -
04:35 PM D4Science Infrastructure Task #5586 (Closed): nagios check on node76.p.d4science.research-infrastructures.eu (JackRabbit): from tomcat to smartgears
- Done.
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04:08 PM D4Science Infrastructure Task #5568 (Feedback): Please Update orientdb version to 2.2.12
OK, I adjusted the task that removes the old hooks.
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12:49 PM D4Science Infrastructure Task #5568: Please Update orientdb version to 2.2.12
- Luca Frosini wrote:
> I thought about this proposal but it is difficult to keep aligned.
> Can we remove all files ... -
12:56 PM D4Science Infrastructure Task #5584 (Feedback): Please upgrade resource-registry
- When upgrading you need to pass an additional variable to the play, so that the old webapp will be removed:
~~~
-... -
12:34 PM D4Science Infrastructure Task #5531 (Closed): mount /tmp folder of infra-gateway1.d4science.org to SAN as infra-gateway.d4science.org
- Done.
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11:57 AM D4Science Infrastructure Task #5508 (Feedback): new Geonetwork instance
- Fabio Sinibaldi wrote:
> The DBMS needs to be postgis enabled.
They are installed already. postgresql 9.5, postgi...
Oct 26, 2016
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08:08 PM D4Science Infrastructure Task #5508: new Geonetwork instance
- The node is up. The postgres credentials are the same of the *new* dev DB.
The missing parts are a working smartge... -
07:32 PM D4Science Infrastructure Task #5508: new Geonetwork instance
- I'm going to install a 9.5 postgresql instance on the same host. If that postgresql version is OK, I'll create a sepa...
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07:00 PM D4Science Infrastructure Task #5508: new Geonetwork instance
- hostname and IP are going to be geonetwork1-p-d4s.d4science.org 146.48.122.250
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06:51 PM D4Science Infrastructure Task #5508 (In Progress): new Geonetwork instance
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06:50 PM D4Science Infrastructure Task #5568: Please Update orientdb version to 2.2.12
- Luca Frosini wrote:
> The last thing to be fixed in ansible script is that is a new version of hooks jas is availabl... -
06:35 PM D4Science Infrastructure Task #5580 (Closed): Update rewrite rules for data.d4science to allow access to workspace-explorer-app
- It's only a matter of adding a new context to the ansible variables.
~~~
- - { http_enabled: True, http_port: '...
Oct 25, 2016
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03:43 PM D4Science Infrastructure Task #5338 (Closed): Allow XHR requests on D4science Geoserver WFS
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01:11 PM D4Science Infrastructure Task #5338: Allow XHR requests on D4science Geoserver WFS
- Emmanuel Blondel wrote:
> Hi Andrea, thanks for this, indeed now we don't get any cross-origin exception on the clie... -
09:59 AM D4Science Infrastructure Task #5338: Allow XHR requests on D4science Geoserver WFS
I reworked the CORS configuration because it seems that geoserver gets confused (or is the caller to get confused?)...
Oct 24, 2016
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07:47 PM D4Science Infrastructure Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
- Gianpaolo Coro wrote:
> Could you please install it on dataminer1-devnext?
Done.
> What happens if one of the ... -
03:41 PM D4Science Infrastructure Task #4371 (Feedback): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
- The lists are now got from subversion. script and the cron jobs work as proposed in #note-2:
* One cron job runs a... -
07:43 PM D4Science Infrastructure Task #5338: Allow XHR requests on D4science Geoserver WFS
- Can you check now?
Or can you show me a way to test by myself?
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11:15 AM D4Science Infrastructure Task #5338: Allow XHR requests on D4science Geoserver WFS
- My fault, I assumed that the request were made over https. Now it should work over http too.
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02:44 PM D4Science Infrastructure Incident #5556 (Closed): RStudio is down on RprototypingLab
- The sessions files had the wrong owner. Now has been fixed.
Oct 21, 2016
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07:29 PM D4Science Infrastructure Task #5338: Allow XHR requests on D4science Geoserver WFS
- @emmanuel.blondel@fao.org I've just enabled both CORS and https on the dev geoserver. Are you able to test if it solv...
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05:39 PM D4Science Infrastructure Task #5338 (In Progress): Allow XHR requests on D4science Geoserver WFS
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06:11 PM D4Science Infrastructure Task #5546 (In Progress): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
On rstudio-dev I've just installed a new version of the r-connector script that:
* do not allow the creation of ...-
02:34 PM D4Science Infrastructure Task #5546 (Closed): Install a .Rprofile file inside the rstudio users's home directories and fix the home directory permissions
- The public repository for the file is here: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-...
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02:41 PM D4Science Infrastructure Task #4371: same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
- I'm attaching the files lists. @gianpaolo.coro@isti.cnr.it would you setup a subversion repository for them?
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02:32 PM D4Science Infrastructure Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
- As I wrote by email, I don't know why the r-connector script that adds users creates local users if they're not avail...
Oct 20, 2016
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08:04 PM D4Science Infrastructure Task #4842 (Feedback): Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
- rstudio.d4science.org is now authenticating against ldap.d4science.org. While rstudio-dev.d4science.org is authentica...
Oct 19, 2016
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02:34 PM D4Science Infrastructure Task #5290: Align DataMiner Locale to the RStudio Locale
- Emmanuel Blondel wrote:
> Not yet. Generally speaking i would prefer to check this through the feature requested in ...
Oct 18, 2016
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03:13 PM D4Science Infrastructure Task #5534 (Closed): Ansible: add new scope to the CkanConnector playbook
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03:13 PM D4Science Infrastructure Task #5534 (In Progress): Ansible: add new scope to the CkanConnector playbook
- Done.
The playbook configuration has been changed to be smartgears 2.0 compliant.
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02:48 PM D4Science Infrastructure Task #5290: Align DataMiner Locale to the RStudio Locale
- @emmanuel.blondel@fao.org did you have the chance to test this?
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02:47 PM D4Science Infrastructure Task #5451: Ensure that dependent libraries invoked by R have same versions in Dataminer / RStudio environment
- We are going towards a continuous packages synchronization, see #4371.
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02:44 PM D4Science Infrastructure Task #4842: Make the ldap configuration on rstudio(-dev).d4science.org point to ldap.d4science.org
- rstudio-dev was also migrated. The rstudio ldap configuration was changed, at the next reboot it will be effective.
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02:42 PM D4Science Infrastructure Task #4371 (In Progress): same R configuration (R version and packages) on R-Studio as the one on machine(s) used by Dataminer.
- The script and the cron jobs are ready.
We now only need a repository where to store the three lists.
Oct 17, 2016
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02:16 PM D4Science Infrastructure Task #5497: Move some infrastructure services to the ganeti cluster
- gw1.d4science.org is running. It will take the place of gw.d4science.org.
Oct 13, 2016
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07:42 PM D4Science Infrastructure Task #5497: Move some infrastructure services to the ganeti cluster
- ns-cache1 migration completed.
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05:35 PM D4Science Infrastructure Task #5497: Move some infrastructure services to the ganeti cluster
- ns-cache2 has been migrated. Now it's ns-cache1's turn.
Oct 11, 2016
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05:03 PM D4Science Infrastructure Task #5497 (In Progress): Move some infrastructure services to the ganeti cluster
- migration of ns-cache2 is ongoing.
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03:41 PM D4Science Infrastructure Task #5497 (Closed): Move some infrastructure services to the ganeti cluster
- Candidates are:
ns-cache1
ns-cache2
gw{1,2} (new openvpn servers that will live side by side)
monitoring-proxy,... -
03:05 PM D4Science Infrastructure Task #5105 (Closed): Enable WebSocket support on nginx for infrastructure gateway
- Also verified on the rstudio servers.
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